103 results on '"Radonovich M"'
Search Results
2. A 36-Kilodalton Cellular Transcription Factor Mediates an Indirect Interaction of Human T-Cell Leukemia/Lymphoma Virus Type I TAX1 with a Responsive Element in the Viral Long Terminal Repeat
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Marriott, S J, Lindholm, P F, Brown, K M, Gitlin, S D, Duvall, J F, Radonovich, M F, and Brady, J N
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Cell Nucleus ,Human T-lymphotropic virus 1 ,Transcription, Genetic ,Immunoblotting ,Cell Biology ,DNA, Viral ,Chromatography, Gel ,Trans-Activators ,Humans ,Oligonucleotide Probes ,Molecular Biology ,Research Article ,HeLa Cells ,Protein Binding ,Repetitive Sequences, Nucleic Acid ,Transcription Factors - Abstract
The human T-cell leukemia/lymphoma virus type I (HTLV-I) trans activator, TAX1, interacts indirectly with a TAX1-responsive element, TRE-2, located at positions -117 to -163 in the viral long terminal repeat. This report describes the characterization of a 36-kilodalton (kDa) protein identified in HeLa nuclear extract which mediates the interaction of TAX1 with TRE-2. Purification of the protein was achieved by zinc chelate chromatography and preparative sodium dodecyl sulfate-polyacrylamide gel electrophoresis. The renatured 36-kDa protein bound specifically to a TRE-2 oligonucleotide but not to nonfunctional base substitution mutant probes in a gel retardation assay. Renatured proteins of differing molecular weights were unable to form this complex. In addition, the 36-kDa protein specifically activated transcription from the HTLV-I promoter in vitro. Purified TAX1 protein formed a complex with the TRE-2 oligonucleotide in the presence of the 36-kDa protein, suggesting that indirect interaction of TAX1 with the viral long terminal repeat may be one of the mechanisms by which HTLV-I transcription is regulated.
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- 1990
3. Cancer stem cell gene signature of ovarian tumor side populations
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Ozbun, L., primary, Vathipadiekal, V., additional, Radonovich, M. E., additional, Pise-Masison, C., additional, Saxena, D., additional, Hauschka, P. V., additional, Mok, S. C., additional, and Birrer, M. J., additional
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- 2008
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4. Use of predictive gene expression signature from advanced-stage serous papillary ovarian cancer to identify biologically relevant molecular targets for chemoresponse
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Ozbun, L., primary, Bonome, T., additional, Radonovich, M., additional, Pise-Masison, C., additional, Brady, J., additional, Caplen, N., additional, Johnson, M., additional, Mok, S. C., additional, and Birrer, M. J., additional
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- 2007
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5. Gene expression signature predicts chemoresponse of microdissected papillary serous ovarian tumors
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Ozbun, L., primary, Bonome, T., additional, Johnson, M. E., additional, Radonovich, M., additional, Pise-Masison, C., additional, Brady, J., additional, Mok, S., additional, and Birrer, M. E., additional
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- 2006
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6. Identification of a gene signature that can predict lone-term survival in patients with high-grade late stage serous ovarian cancer
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Bonome, T., primary, Park, D.-C., additional, Hao, K., additional, Donninger, H., additional, Radonovich, M., additional, Brady, J., additional, Barrett, J. C., additional, Wong, W. H., additional, Welch, W. R., additional, Mok, S. C., additional, and Birrer, M. J., additional
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- 2005
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7. Expression profiling of microdissected papillary serous ovarian epithelial cancers identifies genes describing the unique phenotypes of borderline and malignant tumors
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Donninger, H., primary, Bonome, T., additional, Li, J.-Y., additional, Park, D.-C., additional, Radonovich, M., additional, Pise-Masison, C., additional, Brady, J., additional, Barrett, J. C., additional, Mok, S. C., additional, and Birrer, M. J., additional
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- 2005
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8. Gene expression profiling of advanced ovarian cancers to predict the outcome of primary surgical cytoreduction
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Levine, D. A., primary, Bonome, T., additional, Olshen, A. B., additional, Bogomolniy, F., additional, Brady, J., additional, Pise-Masison, C., additional, Radonovich, M., additional, Chi, D. S., additional, Birrer, M. J., additional, and Boyd, J., additional
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- 2004
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9. Insights into the Molecular Mechanism of p53 Inhibition by HTLV Type 1 Tax
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Pise-Masison, Cynthia A., primary, Mahieux, R., additional, Radonovich, M., additional, Jiang, H., additional, Duvall, J., additional, Guillerm, C., additional, and Brady, J. N., additional
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- 2000
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10. Interaction of the human T-cell lymphotropic virus type 1 tax transactivator with transcription factor IIA
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Clemens, K E, primary, Piras, G, additional, Radonovich, M F, additional, Choi, K S, additional, Duvall, J F, additional, DeJong, J, additional, Roeder, R, additional, and Brady, J N, additional
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- 1996
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11. Interaction of human immunodeficiency virus type 1 Tat with a unique site of TFIID inhibits negative cofactor Dr1 and stabilizes the TFIID-TFIIA complex
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Kashanchi, F, primary, Khleif, S N, additional, Duvall, J F, additional, Sadaie, M R, additional, Radonovich, M F, additional, Cho, M, additional, Martin, M A, additional, Chen, S Y, additional, Weinmann, R, additional, and Brady, J N, additional
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- 1996
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12. Transactivation of the human T-cell lymphotropic virus type 1 Tax1-responsive 21-base-pair repeats requires Holo-TFIID and TFIIA
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Duvall, J F, primary, Kashanchi, F, additional, Cvekl, A, additional, Radonovich, M F, additional, Piras, G, additional, and Brady, J N, additional
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- 1995
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13. Transcription of the human T-cell lymphotropic virus type I promoter by an alpha-amanitin-resistant polymerase
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Piras, G, primary, Kashanchi, F, additional, Radonovich, M F, additional, Duvall, J F, additional, and Brady, J N, additional
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- 1994
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14. Sequences downstream of the RNA initiation site regulate human T-cell lymphotropic virus type I basal gene expression
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Kashanchi, F, primary, Duvall, J F, additional, Lindholm, P F, additional, Radonovich, M F, additional, and Brady, J N, additional
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- 1993
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15. Human immunodeficiency virus Tat transactivation: induction of a tissue-specific enhancer in a nonpermissive cell line
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Remenick, J, primary, Radonovich, M F, additional, and Brady, J N, additional
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- 1991
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16. Expression profiling of mucinous tumors of the ovary identifies genes of clinicopathologic importance.
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Wamunyokoli, F. W., Bonome, T., Lee, J. Y., Feltmate, C. M., Welch, W. R., Radonovich, M., Pise-Masison, C., Brady, J.', Hao, K., Berkowitz, R. S., Mok, S., Birrer, M. J., and Cassone, Marco
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OVARIAN tumors ,CANCER ,CANCER genes ,OVARIAN diseases - Abstract
The article comments on a study which screened the entire transcriptome of mucinous ovarian tumors and compared them to other ovarian cancers in order to discover genes and metabolic pathways responsible for the clinical characteristics of the disease conducted by F. W. Wamunyokoli et al. It cites that ovarian cancer is considered as one of the neoplasms with the worst prognosis due to delayed diagnosis. It notes that tumors in ovaries can show up as borderline disease with metastatic potential.
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- 2006
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17. Protective Role of Kupffer Cells in Acetaminophen-Induced Hepatic Injury in Mice
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Ju, C., Reilly, T. P., Bourdi, M., Radonovich, M. F., Brady, J. N., George, J. W., and Pohl, L. R.
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Hepatic injury induced by various toxic agents, including acetaminophen (APAP), has been attributed, in part, to the production of proinflammatory cytokines and other mediators by resident Kupffer cells within the liver. However, recent evidence from our laboratory has demonstrated that hepato-protective factors, such as interleukin (IL)-10 and cyclooxygenase-derived mediators, are also upregulated in response to hepatic damage to help protect against exacerbated injury, and Kupffer cells have been suggested to be a source of these modulatory factors. In other models, Kupffer cells also serve important regulatory functions in pathophysiological states of the liver. Therefore, we reevaluated the role of Kupffer cells in a murine model of APAP-induced liver injury using liposome-entrapped clodronate (liposome/clodronate) as an effective Kupffer cell-depleting agent. We show that in contrast to pretreatment of mice with a widely used macrophage inhibitor, gadolinium chloride, which did not deplete Kupffer cells but moderately protected against APAP-induced hepatotoxicity as reported previously, the intravenous injection of liposome/clodronate caused nearly complete elimination of Kupffer cells and significantly increased susceptibility to APAP-induced liver injury as compared with mice pretreated with empty liposomes. This increased susceptibility was apparently unrelated to the metabolism of APAP since liposome/clodronate pretreatment did not alter APAP−protein adduct levels. Instead, Kupffer cell depletion by liposome/clodronate led to significant decreases in the levels of hepatic mRNA expression of several hepato-regulatory cytokines and mediators, including IL-6, IL-10, IL-18 binding protein and complement 1q, suggesting that Kupffer cells are a significant source for production of these mediators in this model. Our findings indicate that, in addition to their protoxicant activities, Kupffer cells can also have an important protective function in the liver through the production of a variety of modulatory factors which may counteract inflammatory responses and/or stimulate liver regeneration.
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- 2002
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18. A Protective Role for Cyclooxygenase-2 in Drug-Induced Liver Injury in Mice
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Reilly, T. P., Brady, J. N., Marchick, M. R., Bourdi, M., George, J. W., Radonovich, M. F., Pise-Masison, C. A., and Pohl, L. R.
- Abstract
Despite the utility of cyclooxygenase (COX) inhibition as an antiinflammatory strategy, prostaglandin (PG) products of COX-1 and -2 provide important regulatory functions in some pathophysiological states. Scattered reports suggest that COX inhibition may also promote adverse drug events. Here we demonstrate a protective role for endogenous COX-derived products in a murine model of acetaminophen (APAP)-induced acute liver injury. A single hepatotoxic dose caused the selective induction of COX-2 mRNA and increased PGD2 and PGE2 levels within the livers of COX+/+ male mice suggesting a role for COX-2 in this model of liver injury. APAP-induced hepatotoxicity and lethality were markedly greater in COX-2-/- and -/+ mice in which normal PG responsiveness is altered. The significantly increased toxicity linked to COX-2 deficiency could be mimicked using the selective COX-2 inhibitory drug, celecoxib, in COX+/+ mice and was not due to alterations in drug−protein adduct formation, a surrogate for bioactivation and toxicity. Microarray analyses indicated that increased injury associated with COX-2 deficiency coincided, most notably, with a profoundly impaired induction of heat shock proteins in COX-2-/+ mice suggesting that PGs may act as critical endogenous stress signals following drug insult. These findings suggest that COX-2-derived mediators serve an important hepato-protective function and that COX inhibition may contribute to the risk of drug-induced liver injury, possibly through both nonimmunological and immunological pathways.
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- 2001
19. Phosphorylation of p53 serine 15 increases interaction with CBP.
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Lambert, P F, Kashanchi, F, Radonovich, M F, Shiekhattar, R, and Brady, J N
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p53 exerts its cell cycle regulatory effects through its ability to function as a sequence-specific DNA binding transcription factor. CREB-binding protein (CBP)/p300, through its interaction with the N terminus of p53, acts as a coactivator for p53 and increases the sequence-specific DNA-binding activity of p53 by acetylating its C terminus. The same N-terminal domain of p53 has recently been shown to be phosphorylated at Ser15 in response to gamma-irradiation. Remarkably, we now demonstrate that phosphorylation of p53 at Ser15 increases its ability to recruit CBP/p300. The increase in CBP/p300 binding was followed by an increase in the overall level of acetylation of the C terminus of p53. These results provide a mechanism for the activation of p53-regulated genes following DNA damage, through a signaling pathway linking p53 N-terminal kinase and C-terminal acetyltransferase activities.
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- 1998
20. Simian virus 40 major late promoter: an upstream DNA sequence required for efficient in vitro transcription
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Brady, J, Radonovich, M, Thoren, M, Das, G, and Salzman, N P
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We have previously identified an 11-base DNA sequence, 5'-G-G-T-A-C-C-T-A-A-C-C-3' (simian virus 40 [SV40] map position 294 to 304), which is important in the control of SV40 late RNA expression in vitro and in vivo (Brady et al., Cell 31:625-633, 1982). We report here the identification of another domain of the SV40 late promoter. A series of mutants with deletions extending from SV40 map position 0 to 300 was prepared by nuclease BAL 31 treatment. The cloned templates were then analyzed for efficiency and accuracy of late SV40 RNA expression in the Manley in vitro transcription system. Our studies showed that, in addition to the promoter domain near map position 300, there are essential DNA sequences between nucleotide positions 74 and 95 that are required for efficient expression of late SV40 RNA. Included in this SV40 DNA sequence were two of the six GGGCGG SV40 repeat sequences and an 11-nucleotide segment which showed strong homology with the upstream sequences required for the efficient in vitro and in vivo expression of the histone H2A gene. This upstream promoter sequence supported transcription with the same efficiency even when it was moved 72 nucleotides closer to the major late cap site. In vitro promoter competition analysis demonstrated that the upstream promoter sequence, independent of the 294 to 304 promoter element, is capable of binding polymerase-transcription factors required for SV40 late gene transcription. Finally, we show that DNA sequences which control the specificity of RNA initiation at nucleotide 325 lie downstream of map position 294.
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- 1984
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21. Simian virus 40 maturation: chromatin modifications increase the accessibility of viral DNA to nuclease and RNA polymerase
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Brady, J, Radonovich, M, Lavialle, C, and Salzman, N P
- Abstract
The accessibility of extracellular and nuclear simian virus 40 (SV40-M and SV40-I, respectively) virion chromatin DNAs to micrococcal nuclease, DNase I, BglI, EcoRI, and RNA polymerase was examined. Our results support the following conclusions: (i) the intranucleosomal DNA of SV40-I chromatin, similar to the precursor 75S chromatin complex, is resistant to enzymatic activity; and (ii) SV40-M virion chromatin is modified in a manner which increases the accessibility of viral DNA to enzymes, and the distinction between nucleosomal DNA and linker DNA is absent. Micrococcal nuclease digestion of SV40-I virion chromatin gave a typical nucleosomal DNA ladder pattern with a repeat unit of 205 base pairs of DNA. SV40-I chromatin was sensitive to cleavage with endonuclease BglI, but not with EcoRI. When SV40-I virion chromatin was used as a template, the rate of incorporation of ribonucleoside triphosphates into RNA was 5% of that obtained with naked form SV40 form I DNA. Micrococcal nuclease digestion of SV40-M virion chromatin resulted in submonomeric DNA fragments of approximately 55 base pairs, but no larger repeating unit of DNA was observed. SV40-M virion chromatin was sensitive to cleavage with either BglI or EcoRI and was approximately 20% more susceptible to digestion with DNase I than was SV40-I virion chromatin. The transcriptional efficiency of the extracellular virion chromatin was almost equivalent to that of naked SV40 form I DNA and was 16-fold higher than the rate observed with nuclear virion chromatin. The increased transcriptional activity was dependent upon the presence of nonhistone viral protein VP1 or VP2 or both.
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- 1981
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22. Stable association of viral protein VP1 with simian virus 40 DNA
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Brady, J N, Lavialle, C A, Radonovich, M F, and Salzman, N P
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Mild dissociation of simian virus 40 particles releases a 110S virion core nucleoprotein complex containing histones and the three viral proteins VP1, VP2, and VP3. The association of viral protein VP1 within this nucleoprotein complex is mediated at least partially through a strong interaction with the viral DNA. Treatment of the virion-derived 110S nucleoprotein complex with 0.25% Sarkosyl dissociated VP2, VP3, and histones, leaving a stable VP1-DNA complex. The VP1-DNA complex had a sedimentation value of 30S and a density of 1.460 g/cm3. The calculated molecular weight of the complex was 7.9 x 10(6), with an average of 100 VP1 molecules per DNA. Agarose gel electrophoresis of the VP1-DNA complex demonstrated that VP1 is associated not only with form I and form II simian virus 40 DNAs but also with form III simian virus 40 DNA generated by cleavage with EcoRI.
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- 1981
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23. Regulation of simian virus 40 early and late gene transcription without viral DNA replication
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Birkenmeier, E H, Chiu, N, Radonovich, M F, May, E, and Salzman, N P
- Abstract
Primary cultures of African green monkey kidney cells were infected with the simian virus 40 temperature-sensitive mutant tsA58 at the nonpermissive temperature of 41 degrees C for 12 to 20 h. Under these conditions, a defective T antigen was produced and no viral DNA replication was detected. Viral transcription complexes were extracted from infected nuclei using Sarkosyl and the nascent chains of RNA elongated in vitro. Sixty to 70% of the viral RNA synthesized in vitro hybridized to late gene sequences. In contrast, 80 to 90% of the nuclear viral RNA labeled in vivo during a 15-min pulse with [3H]uridine hybridized to early gene sequences. This suggests that selective degradation of late gene transcripts occurs in vivo. The role of T antigen and viral DNA replication in regulation of simian virus 40 transcription is discussed.
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- 1979
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24. Accurate transcription of simian virus 40 chromatin in a HeLa cell extract
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Brady, J N, Radonovich, M, and Salzman, N P
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During simian virus 40 viral maturation, a series of modifications occur which alter the composition of viral nucleoprotein complexes. As a consequence, the chromatin that is extracted from extracellular simian virus 40 virions exhibits properties that are similar to those of transcriptionally active eucaryotic chromatin. The influence of this chromatin structure on specific RNA initiation by RNA polymerase II was examined by using the in vitro HeLa cell extract of Manley et al. (Proc. Natl. Acad. Sci. U.S.A. 77:3855-3859, 1980). The 5' ends of RNA transcripts were positioned by the "run-off" assay, in which transcripts extend from the initiation site to termination sites created by restriction cleavage and by S1 nuclease analysis, using DNA probes labeled at their 5' termini. Two major early RNA transcripts, which originated at map positions 5,240 +/- 10 and 5,145 +/- 10, and two major late RNA transcripts, which originated at map positions 325 +/- 10 and 185 +/- 10, were identified. Transcripts were initiated with comparable relative efficiencies at the same 5' site when either purified DNA or chromatin was used as the template. Our results suggest that extracellular simian virus 40 virion chromatin modifications do not regulate simian virus 40 promoter selection but function to increase the accessibility of RNA promoter sequences to RNA polymerase II and allow efficient elongation of the RNA chain after the initiation event.
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- 1982
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25. Stimulation of simian virus 40 late gene expression by simian virus 40 tumor antigen.
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Brady, J, Bolen, J B, Radonovich, M, Salzman, N, and Khoury, G
- Abstract
The early simian virus 40 (SV40) gene product, large tumor (T) antigen, is responsible for the initiation of viral DNA replication and the autoregulation of early gene expression through direct protein-DNA interactions. We investigated the role of T antigen in late viral gene expression, independent of its function in amplifying templates through DNA replication. SV40 DNA was transfected into BSC-1 and COS-1 cells and cultured in the presence of inhibitors of DNA replication. Electrophoretic immunoblot analysis indicated that both the onset and the extent of SV40 late gene expression is increased in COS-1 cells, which constitutively express SV40 T antigen. Blot hybridization analysis of poly(A)-selected RNA demonstrated that the level of synthesis of the major late structural protein VP-1 in COS-1 cells was due to increased transcription. Similar results were obtained when plasmids that contain the SV40 late gene but lack both the origin for viral DNA replication and the early gene coding region were transfected onto COS-1 cells. Using lines of SV40-transformed monkey kidney cells that express altered T antigens, we found that enhanced expression of the late gene product is correlated with the ability of T antigen to bind SV40 DNA. These results indicate that large T antigen plays a role in the stimulation of late viral gene expression.
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- 1984
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26. Simian virus 40 guanine-cytosine-rich sequences function as independent transcriptional control elements in vitro
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Mishoe, H, Brady, J N, Radonovich, M, and Salzman, N P
- Abstract
We have recently shown that DNA sequences located within the simian virus 40 (SV40) G-C-rich, 21-base-pair repeats constitute an important transcriptional control element of the SV40 late promoter (Brady et al., Mol. Cell. Biol. 4:133-141, 1984). To gain further insight into the mechanism by which the SV40 G-C-rich repeats function, we have analyzed the transcriptional properties of several recombinant DNAs. The results presented in this report suggest that the SV40 G-C-rich sequences can function as independent RNA polymerase II transcriptional-control elements. In vitro competition studies demonstrated that sequences within the G-C-rich, 21-base-pair repeats, in the absence of either the SV40 early or late -25 transcriptional-control signals or the major RNA initiation sites, efficiently competed for transcription factors required for SV40 early and late RNA synthesis. Our transcription studies also demonstrated that in the absence of contiguous SV40 transcription control sequences, G-C-rich sequences stimulated initiation of transcription in a bidirectional manner, from proximally located sequences. Finally, we demonstrated that the 21-base-pair-repeat region can stimulate in vitro transcription from the heterologous adenovirus 2 major late promoter.
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- 1984
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27. Activation of the human T-cell leukemia virus type I long terminal repeat by 12-O-tetradecanoylphorbol-13-acetate and by tax (p40x) occurs through similar but functionally distinct target sequences
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Radonovich, M and Jeang, K T
- Abstract
One potent transcriptional activator of human T-cell leukemia virus type I (HTLV-I) is virally encoded protein Tax (p40x). p40x trans-activates HTLV-I through the long terminal repeat (LTR) by using a triply repeated 21-base-pair sequence as the target. In this report we have characterized the induction of the HTLV-I LTR by 12-O-tetradecanoylphorbol-13-acetate (TPA). By assaying progressively deleted mutations in the HTLV-I LTR, we have delimited a 60-base-pair sequence in the LTR which is capable of conferring TPA responsiveness, but not p40x responsiveness, to heterologous promoters in a position-independent fashion. This HTLV-I TPA-responsive element is specifically recognized by preexisting factors from uninfected cells. We show that activation of this sequence by phorbol ester does not require de novo cellular protein synthesis. When the HTLV-I LTR was simultaneously activated by both Tax and TPA, an additive effect was seen. This suggests the use of distinct regulatory pathways by the two respective trans-activators.
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- 1989
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28. Characterization of cellular factors that interact with the human T-cell leukemia virus type I p40x-responsive 21-base-pair sequence
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Jeang, K T, Boros, I, Brady, J, Radonovich, M, and Khoury, G
- Abstract
Transcriptional activation of the human T-cell leukemia virus type I (HTLV-I) long terminal repeat (LTR) by viral protein p40x requires a 21-base-pair (bp) sequence which is repeated three times within the LTR. This sequence contains a core octanucleotide (TGACGTCT) which has been attributed to be a cyclic-AMP (cAMP)-responsive element. We demonstrate here that the HTLV-I LTR can be specifically stimulated by cAMP regulators and have identified four proteins in HeLa cells that bind to the HTLV-I 21-bp sequence. We correlated the in vitro binding and transcriptional activity of one of these cellular factors (Mr, 180,000) to the trans-activation of the HTLV-I LTR by p40x. Point mutations were generated within the cAMP octanucleotide of the HTLV-I 21-bp sequence that simultaneously abolished biological responsiveness to trans-activation by p40x and to stimulation by cAMP. We found that these mutations also eliminated the binding of the 180-kilodalton HeLa factor to the HTLV-I 21-bp element. In the absence of a demonstrable DNA-binding property for p40x, we hypothesize that cellular proteins are involved, possibly through signal transduction pathways, in its trans-activation of responsive promoters.
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- 1988
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29. Characterization of the 5'-terminal structure of simian virus 40 early mRNA's
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Thompson, J A, Radonovich, M F, and Salzman, N P
- Abstract
RPC-5 reverse-phase chromatography has been used to isolate fragments of simian virus 40 DNA generated by appropriate digestions with restriction endonucleases. Ten specific DNA fragments, mapping successively in a counterclock-wise direction from 0.67 to 0.515 on the simian virus 40 genome, were each hybridized to cytoplasmic mRNA obtained during the early phase of simian virus 40 infection. Primer extension methods with reverse transcriptase were used to characterize the 5' ends of two species of viral mRNA which were fractionated on sucrose gradients. Analysis of the complementary DNA products demonstrated the presence of two different spliced structures of simian virus 40 early mRNA's, both of which had the same 5'-end sequences (AUU), located at residues 18 to 20 on the viral genome. The mRNA for small-t contained a segment 588 bases in length (residues 18 to 605) spliced to residues 672. A 66-nucleotide segment rich in adenine-thymine was spliced out of this mRNA. The mRNA for large-T contained a segment 308 bases in length (residues 18 to 325) which is also spliced to residue 672. A 346-base segment was spliced from this mRNA. The results suggest that there are two levels for control of genetic expression. One would be the regulation of initiation of transcription at a common promoter; the other involves post-transcriptional splicing.
- Published
- 1979
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30. Unwinding of Parental Strands During Simian Virus 40 DNA Replication
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Salzman, N. P., Sebring, E. D., and Radonovich, M.
- Abstract
Pools of young (less than 60% replicated) and mature (60-90% replicated) replicating molecules of simian virus 40 (SV40) DNA have been treated at pH 12.2 in order to dissociate growing chains from the parental strands. The molecules are neutralized so that the parental strands can reassociate and they have then been isolated. They are covalently closed structures which sediment rapidly in alkaline sucrose gradients; however, the sedimentation rates are less than the sedimentation rate of SV40 DNA I. Isopycnic banding in CsCl-ethidium bromide and sedimentation velocity studies in the presence of various amounts of ethidium bromide indicate that these structures contain negative superhelical turns and several-fold-higher superhelix densities than SV40 DNA I (the covalently closed DNA molecule). These structures are those that would be predicted if nicking, unwinding, and sealing of the parental strands occurred as replication proceeded. These experiments provide a direct demonstration that there is a progressive decrease in the topological winding number which accompanies SV40 DNA replication.
- Published
- 1973
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31. The transcription profile of Tax-3 is more similar to Tax-1 than Tax-2: insights into HTLV-3 potential leukemogenic properties.
- Author
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Chevalier SA, Durand S, Dasgupta A, Radonovich M, Cimarelli A, Brady JN, Mahieux R, and Pise-Masison CA
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- Cell Line, Tumor, Cluster Analysis, Gene Expression, Gene Expression Regulation, Gene Order, Gene Products, tax genetics, Gene Regulatory Networks, Genetic Vectors genetics, HEK293 Cells, Humans, Reproducibility of Results, Transduction, Genetic, Cell Transformation, Viral, Gene Expression Profiling, Gene Products, tax metabolism, Human T-lymphotropic virus 3 genetics, Human T-lymphotropic virus 3 metabolism, Transcriptional Activation
- Abstract
Human T-cell Lymphotropic Viruses type 1 (HTLV-1) is the etiological agent of Adult T-cell Leukemia/Lymphoma. Although associated with lymphocytosis, HTLV-2 infection is not associated with any malignant hematological disease. Similarly, no infection-related symptom has been detected in HTLV-3-infected individuals studied so far. Differences in individual Tax transcriptional activity might account for these distinct physiopathological outcomes. Tax-1 and Tax-3 possess a PDZ binding motif in their sequence. Interestingly, this motif, which is critical for Tax-1 transforming activity, is absent from Tax-2. We used the DNA microarray technology to analyze and compare the global gene expression profiles of different T- and non T-cell types expressing Tax-1, Tax-2 or Tax-3 viral transactivators. In a T-cell line, this analysis allowed us to identify 48 genes whose expression is commonly affected by all Tax proteins and are hence characteristic of the HTLV infection, independently of the virus type. Importantly, we also identified a subset of genes (n = 70) which are specifically up-regulated by Tax-1 and Tax-3, while Tax-1 and Tax-2 shared only 1 gene and Tax-2 and Tax-3 shared 8 genes. These results demonstrate that Tax-3 and Tax-1 are closely related in terms of cellular gene deregulation. Analysis of the molecular interactions existing between those Tax-1/Tax-3 deregulated genes then allowed us to highlight biological networks of genes characteristic of HTLV-1 and HTLV-3 infection. The majority of those up-regulated genes are functionally linked in biological processes characteristic of HTLV-1-infected T-cells expressing Tax such as regulation of transcription and apoptosis, activation of the NF-κB cascade, T-cell mediated immunity and induction of cell proliferation and differentiation. In conclusion, our results demonstrate for the first time that, in T- and non T-cells types, Tax-3 is a functional analogue of Tax-1 in terms of transcriptional activation and suggest that HTLV-3 might share pathogenic features with HTLV-1 in vivo.
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- 2012
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32. Gene expression profiling of ATL patients: compilation of disease-related genes and evidence for TCF4 involvement in BIRC5 gene expression and cell viability.
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Pise-Masison CA, Radonovich M, Dohoney K, Morris JC, O'Mahony D, Lee MJ, Trepel J, Waldmann TA, Janik JE, and Brady JN
- Subjects
- Adult, Aged, Antibodies, Monoclonal therapeutic use, Antibodies, Monoclonal, Humanized, Antineoplastic Combined Chemotherapy Protocols therapeutic use, Basic Helix-Loop-Helix Leucine Zipper Transcription Factors, Boronic Acids therapeutic use, Bortezomib, CD4-Positive T-Lymphocytes metabolism, Cell Survival, DNA-Binding Proteins genetics, Daclizumab, Down-Regulation, Female, Gene Expression Profiling, Gene Expression Regulation, Neoplastic drug effects, Humans, Immunoglobulin G therapeutic use, Inhibitor of Apoptosis Proteins, Leukemia-Lymphoma, Adult T-Cell drug therapy, Leukemia-Lymphoma, Adult T-Cell genetics, Male, Microtubule-Associated Proteins genetics, Middle Aged, Pyrazines therapeutic use, RNA Interference, Survivin, Transcription Factor 4, Transcription Factors genetics, Tumor Cells, Cultured, DNA-Binding Proteins metabolism, Gene Expression Regulation, Neoplastic genetics, Leukemia-Lymphoma, Adult T-Cell metabolism, Leukemia-Lymphoma, Adult T-Cell pathology, Microtubule-Associated Proteins metabolism, Transcription Factors metabolism
- Abstract
Adult T-cell leukemia/lymphoma (ATL) is an aggressive and fatal disease. We have examined 32 patients with smoldering, chronic, lymphoma and acute leukemia using Affymetrix HG-U133A2.0 arrays. Using the BRB array program, we identified genes differentially expressed in leukemia cells compared with normal lymphocytes. Several unique genes were identified that were overexpressed in leukemic cells, including TNFSF11, RGS13, MAFb, CSPG2, C/EBP-alpha, and TCF4; 200 of the most highly overexpressed ATL genes were analyzed by the Pathway Studio, version 4.0 program. ATL leukemia cells were characterized by an increase in genes linked to "central" genes CDC2/cyclin B1, SYK/LYN, proliferating cell nuclear antigen, and BIRC5. Because of its potential therapeutic importance, we focused our studies on the regulation and function of BIRC5, whose expression was increased in 13 of 14 leukemia samples. TCF4 reporter assays and transfection of DN-TCF4 demonstrated that TCF4 regulates BIRC5 gene expression. Functionally, transfection of ATL cells with BIRC5 shRNA decreased BIRC5 expression and cell viability 80%. Clinical treatment of ATL patients with Zenapax or bortezomib decreased BIRC5 expression and cell viability. These experiments represent the first direct experimental evidence that BIRC5 plays an important role in ATL cell viability and provides important insight into ATL genesis and potential targeted therapies.
- Published
- 2009
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33. Exenatide blocks JAK1-STAT1 in pancreatic beta cells.
- Author
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Couto FM, Minn AH, Pise-Masison CA, Radonovich M, Brady JN, Hanson M, Fernandez LA, Wang P, Kendziorski C, and Shalev A
- Subjects
- Cells, Cultured, Exenatide, Gene Expression Profiling, Humans, Insulin-Secreting Cells metabolism, Interferon-gamma pharmacology, Janus Kinase 1 genetics, STAT1 Transcription Factor genetics, Signal Transduction drug effects, Hypoglycemic Agents pharmacology, Insulin-Secreting Cells drug effects, Janus Kinase 1 antagonists & inhibitors, Peptides pharmacology, STAT1 Transcription Factor antagonists & inhibitors, Venoms pharmacology
- Abstract
Exenatide (Ex-4) is an antidiabetic drug that acts through the glucagon-like peptide 1 receptor and has recently been approved for the treatment of type 2 diabetes mellitus. Ex-4 also has been shown to affect beta cell gene expression and increase beta cell mass in rodent models of type 1 diabetes mellitus, but the mechanisms are not fully understood. We therefore analyzed the pathways affected by Ex-4 in human islets by using oligonucleotide microarrays and the PathwayStudio software (Ariadne Genomics, Rockville, MD). We identified the JAK1-STAT1 pathway as a novel target of Ex-4 and confirmed the Ex-4-mediated down-regulation of JAK1 and STAT1 by quantitative reverse transcription-polymerase chain reaction in human islets and INS-1 cells. JAK1-STAT1 is the major signaling pathway mediating the interferon gamma effects on beta cell apoptosis in type 1 diabetes mellitus. Thus, these findings suggest that Ex-4 treatment may also be beneficial in type 1 diabetes mellitus, where it may help protect beta cells from cytokine-induced cell death by inhibiting JAK1-STAT1.
- Published
- 2007
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34. Expression profiling of mucinous tumors of the ovary identifies genes of clinicopathologic importance.
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Wamunyokoli FW, Bonome T, Lee JY, Feltmate CM, Welch WR, Radonovich M, Pise-Masison C, Brady J, Hao K, Berkowitz RS, Mok S, and Birrer MJ
- Subjects
- Adenocarcinoma, Mucinous classification, Cluster Analysis, Decision Trees, Diagnosis, Differential, Female, Humans, Oligonucleotide Array Sequence Analysis methods, Ovarian Neoplasms classification, Predictive Value of Tests, Adenocarcinoma, Mucinous genetics, Adenocarcinoma, Mucinous pathology, Gene Expression Profiling, Gene Expression Regulation, Neoplastic, Ovarian Neoplasms genetics, Ovarian Neoplasms pathology
- Abstract
Purpose: To elucidate the molecular mechanisms contributing to the unique clinicopathologic characteristics of mucinous ovarian carcinoma, global gene expression profiling of mucinous ovarian tumors was carried out., Experimental Design: Gene expression profiling was completed for 25 microdissected mucinous tumors [6 cystadenomas, 10 low malignant potential (LMP) tumors, and 9 adenocarcinomas] using Affymetrix U133 Plus 2.0 oligonucleotide microarrays. Hierarchical clustering and binary tree prediction analysis were used to determine the relationships among mucinous specimens and a series of previously profiled microdissected serous tumors and normal ovarian surface epithelium. PathwayAssist software was used to identify putative signaling pathways involved in the development of mucinous LMP tumors and adenocarcinomas., Results: Comparison of the gene profiles between mucinous tumors and normal ovarian epithelial cells identified 1,599, 2,916, and 1,765 differentially expressed in genes in the cystadenomas, LMP tumors, and adenocarcinomas, respectively. Hierarchical clustering showed that mucinous and serous LMP tumors are distinct. In addition, there was a close association of mucinous LMP tumors and adenocarcinomas with serous adenocarcinomas. Binary tree prediction revealed increased heterogeneity among mucinous tumors compared with their serous counterparts. Furthermore, the cystadenomas coexpressed a subset of genes that were differentially regulated in LMP and adenocarcinoma specimens compared with normal ovarian surface epithelium. PathwayAssist highlighted pathways with expression of genes involved in drug resistance in both LMP and adenocarcinoma samples. In addition, genes involved in cytoskeletal regulation were specifically up-regulated in the mucinous adenocarcinomas., Conclusions: These data provide a useful basis for understanding the molecular events leading to the development and progression of mucinous ovarian cancer.
- Published
- 2006
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35. Expression profiling of serous low malignant potential, low-grade, and high-grade tumors of the ovary.
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Bonome T, Lee JY, Park DC, Radonovich M, Pise-Masison C, Brady J, Gardner GJ, Hao K, Wong WH, Barrett JC, Lu KH, Sood AK, Gershenson DM, Mok SC, and Birrer MJ
- Subjects
- Carcinoma, Papillary classification, Carcinoma, Papillary metabolism, Cluster Analysis, Cystadenocarcinoma, Serous classification, Cystadenocarcinoma, Serous metabolism, Female, Gene Expression Profiling, Humans, Neoplasm Staging, Oligonucleotide Array Sequence Analysis methods, Ovarian Neoplasms classification, Ovarian Neoplasms metabolism, Reverse Transcriptase Polymerase Chain Reaction, Carcinoma, Papillary genetics, Carcinoma, Papillary pathology, Cystadenocarcinoma, Serous genetics, Cystadenocarcinoma, Serous pathology, Ovarian Neoplasms genetics, Ovarian Neoplasms pathology
- Abstract
Papillary serous low malignant potential (LMP) tumors are characterized by malignant features and metastatic potential yet display a benign clinical course. The role of LMP tumors in the development of invasive epithelial cancer of the ovary is not clearly defined. The aim of this study is to determine the relationships among LMP tumors and invasive ovarian cancers and identify genes contributing to their phenotypes. Affymetrix U133 Plus 2.0 microarrays (Santa Clara, CA) were used to interrogate 80 microdissected serous LMP tumors and invasive ovarian malignancies along with 10 ovarian surface epithelium (OSE) brushings. Gene expression profiles for each tumor class were used to complete unsupervised hierarchical clustering analyses and identify differentially expressed genes contributing to these associations. Unsupervised hierarchical clustering analysis revealed a distinct separation between clusters containing borderline and high-grade lesions. The majority of low-grade tumors clustered with LMP tumors. Comparing OSE with high-grade and LMP expression profiles revealed enhanced expression of genes linked to cell proliferation, chromosomal instability, and epigenetic silencing in high-grade cancers, whereas LMP tumors displayed activated p53 signaling. The expression profiles of LMP, low-grade, and high-grade papillary serous ovarian carcinomas suggest that LMP tumors are distinct from high-grade cancers; however, they are remarkably similar to low-grade cancers. Prominent expression of p53 pathway members may play an important role in the LMP tumor phenotype.
- Published
- 2005
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36. Gene expression profiling in INS-1 cells overexpressing thioredoxin-interacting protein.
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Minn AH, Pise-Masison CA, Radonovich M, Brady JN, Wang P, Kendziorski C, and Shalev A
- Subjects
- Cell Line, Tumor, Gene Expression Profiling, Humans, Insulin metabolism, Insulin Secretion, Insulinoma, Models, Biological, Pancreatic Neoplasms, Carrier Proteins metabolism, Gene Expression Regulation, Islets of Langerhans metabolism, Thioredoxins metabolism
- Abstract
Thioredoxin-interacting protein (TXNIP) is overexpressed in diabetes and has deleterious effects on pancreatic beta-cells and the cardiovascular system. TXNIP is a regulator of the cellular redox state, but has also been suggested to act as a transcriptional repressor. However, the genes and pathways regulated by TXNIP remain unknown. We therefore compared gene expression in INS-1 insulinoma beta-cells overexpressing TXNIP and control LacZ-overexpressing cells using the Affymetrix 230A rat chip. Analysis with the Bayes methodology revealed 98 differentially expressed genes, 90 of which were down-regulated, consistent with the predicted role of TXNIP as a repressor. Using the PathwayAssist software, we found that affected genes were involved in cell death/survival and insulin secretion, and confirmed these findings by real-time RT-PCR and by functional studies. Thus, aside from regulating the cellular redox, TXNIP does modulate overall gene transcription and thereby may further enhance beta-cell death and impair insulin secretion.
- Published
- 2005
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37. Whole genome expression profiling of advance stage papillary serous ovarian cancer reveals activated pathways.
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Donninger H, Bonome T, Radonovich M, Pise-Masison CA, Brady J, Shih JH, Barrett JC, and Birrer MJ
- Subjects
- Carcinoma, Papillary pathology, Cystadenocarcinoma, Serous pathology, Female, Genome, Humans, Matrix Metalloproteinases, Membrane-Associated, Metalloendopeptidases physiology, Neoplasm Staging, Oligonucleotide Array Sequence Analysis, Ovarian Neoplasms pathology, Polymerase Chain Reaction, Signal Transduction, Carcinoma, Papillary metabolism, Cystadenocarcinoma, Serous metabolism, Gene Expression Profiling, Ovarian Neoplasms metabolism
- Abstract
Ovarian cancer is the most lethal type of gynecologic cancer in the Western world. The high case fatality rate is due in part because most ovarian cancer patients present with advanced stage disease which is essentially incurable. In order to obtain a whole genome assessment of aberrant gene expression in advanced ovarian cancer, we used oligonucleotide microarrays comprising over 40,000 features to profile 37 advanced stage papillary serous primary carcinomas. We identified 1191 genes that were significantly (P < 0.001) differentially regulated between the ovarian cancer specimens and normal ovarian surface epithelium. The microarray data were validated using real time RT-PCR on 14 randomly selected differentially regulated genes. The list of differentially expressed genes includes ones that are involved in cell growth, differentiation, adhesion, apoptosis and migration. In addition, numerous genes whose function remains to be elucidated were also identified. The microarray data were imported into PathwayAssist software to identify signaling pathways involved in ovarian cancer tumorigenesis. Based on our expression results, a signaling pathway associated with tumor cell migration, spread and invasion was identified as being activated in advanced ovarian cancer. The data generated in this study represent a comprehensive list of genes aberrantly expressed in serous papillary ovarian adenocarcinoma and may be useful for the identification of potentially new and novel markers and therapeutic targets for ovarian cancer.
- Published
- 2004
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38. HTLV-I Tax induces a novel interaction between p65/RelA and p53 that results in inhibition of p53 transcriptional activity.
- Author
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Jeong SJ, Radonovich M, Brady JN, and Pise-Masison CA
- Subjects
- Animals, Cell Transformation, Viral, DNA Polymerase II metabolism, Fibroblasts cytology, Fibroblasts physiology, Fibroblasts virology, Gene Expression, HTLV-I Infections virology, Humans, I-kappa B Proteins genetics, I-kappa B Proteins metabolism, Jurkat Cells, Mice, NF-KappaB Inhibitor alpha, NF-kappa B p50 Subunit, Oligonucleotides, Antisense pharmacology, Promoter Regions, Genetic, Protein Serine-Threonine Kinases metabolism, Transcription Factor RelA, Transcription Factor TFIID metabolism, Transcriptional Activation, Tumor Suppressor Protein p53 metabolism, NF-kappaB-Inducing Kinase, Gene Products, tax genetics, HTLV-I Infections physiopathology, Human T-lymphotropic virus 1, NF-kappa B metabolism, Tumor Suppressor Protein p53 genetics
- Abstract
Nuclear factor kappaB (NF-kappaB) activation plays a critical role in oncogenesis by human T-cell lymphotrophic virus type I (HTLV-I), the etiologic agent of adult T-cell leukemia (ATL), and is indispensable for maintenance of the malignant phenotype. In T lymphocytes, Tax-mediated p53 inhibition is dependent on Tax activation of the NF-kappaB pathway and is linked to p53 phosphorylation. We now report that blocking NF-kappaB transcriptional activation in HTLV-I-transformed cells restores p53 activity. Further, using mouse embryo fibroblast (MEF) null cells and antisense oligonucleotides to inhibit expression of NF-kappaB family members, we demonstrate that the p65 subunit of NF-kappaB is uniquely involved in p53 inhibition. Coimmunoprecipitation assays demonstrate an interaction between p65 and p53 in HTLV-I-transformed cells. In transient transfection assays, we demonstrate that Tax induces the p53-p65 interaction. Phosphorylation of p53 at serines 15 and 392 is critical for complex formation. Importantly, Tax-mediated p53 inhibition correlates with p65 and p53 interaction. By using chromatin immunoprecipitation (ChIP) assays, we find that in HTLV-I-transformed cells p53 and p65 form a complex on the inactive, p53-responsive murine double minute 2 (MDM2) promoter. Consistent with reduced transcriptional activity, transcription factor IID (TFIID) binding is not observed. These studies identify a unique mechanism for p53 regulation by the p65/RelA subunit of NF-kappaB.
- Published
- 2004
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39. P53 facilitates degradation of human T-cell leukaemia virus type I Tax-binding protein through a proteasome-dependent pathway.
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Chowdhury IH, Radonovich M, Mahieux R, Pise-Masison C, Muralidhar S, and Brady JN
- Subjects
- Animals, Carrier Proteins antagonists & inhibitors, Cell Line, Cysteine Proteinase Inhibitors pharmacology, Gene Products, tax pharmacology, Humans, Leupeptins pharmacology, Membrane Proteins, Mutation, Proteasome Endopeptidase Complex, Transcription, Genetic, Tumor Suppressor Protein p53 genetics, Carrier Proteins metabolism, Cysteine Endopeptidases metabolism, Gene Products, tax metabolism, Human T-lymphotropic virus 1 metabolism, Intracellular Signaling Peptides and Proteins, Multienzyme Complexes metabolism, Tumor Suppressor Protein p53 physiology
- Abstract
Human T-cell leukaemia virus type 1 (HTLV-I), the aetiological agent of adult T-cell leukaemia (ATL) and tropical spastic paraparesis (TSP/HAM), transforms human T-cells in vivo and in vitro. The Tax protein of HTLV-I is essential for cellular transformation as well as viral and cellular gene transactivation. The interaction of Tax with cellular proteins is critical for these functions. We previously isolated and characterized a novel Tax-binding protein, TRX (TAX1BP2), by screening a Jurkat T-cell cDNA library. In the present study, we present evidence that the tumour suppressor p53 targets the TRX protein for proteasome degradation. Pulse-chase experiments revealed that p53 enhanced the degradation of TRX protein and reduced the half-life from 2.0 to 0.25 h. p53 mutants R248W and R273H enhance TRX degradation suggesting a transcriptionally independent mechanism. Both HTLV-I Tax and the proteasome-specific inhibitor MG132 inhibited p53-mediated TRX protein degradation. These results suggest that TRX degradation is mediated through activation of the proteasome protein degradation pathway independent of transcriptional function of p53. Our results provide the first experimental evidence that Tax inhibits transcription-dependent and independent functions of p53.
- Published
- 2003
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40. Oligonucleotide microarray analysis of intact human pancreatic islets: identification of glucose-responsive genes and a highly regulated TGFbeta signaling pathway.
- Author
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Shalev A, Pise-Masison CA, Radonovich M, Hoffmann SC, Hirshberg B, Brady JN, and Harlan DM
- Subjects
- Amyloid genetics, Aspartic Acid Endopeptidases genetics, Carrier Proteins genetics, Gene Expression Profiling, Humans, Islet Amyloid Polypeptide, Neuropeptides genetics, Proprotein Convertases, Response Elements, Reverse Transcriptase Polymerase Chain Reaction, Transforming Growth Factor beta genetics, Gene Expression Regulation drug effects, Glucose pharmacology, Islets of Langerhans chemistry, Islets of Langerhans metabolism, Oligonucleotide Array Sequence Analysis, Signal Transduction, Thioredoxins, Transforming Growth Factor beta metabolism
- Abstract
Human pancreatic islets are a major focus of diabetes research due to their key role in glucose homeostasis and their potential for transplantation in the treatment of type 1 diabetes. Currently, no comprehensive analysis of baseline or glucose-stimulated islet gene expression is available. Using oligonucleotide microarrays we analyzed isolated intact human islets incubated at low and high glucose. We identified approximately 6000 islet genes, several with clinical implications, as well as a number of glucose-regulated genes. Interestingly, two transforming growth factor beta (TGFbeta) superfamily members were highly regulated by glucose. One of them, PDF, was found to have a very high expression level compared to other TGFbeta superfamily members. Quantitative reverse transcriptase polymerase chain reaction confirmed these results and demonstrated that the highly expressed PDF was approximately 10-fold down- regulated by glucose while other TGFbeta superfamily members and target genes were up-regulated. These results suggest that a highly regulated TGFbeta signaling cascade exists in human islets, and that PDF may play a central role in islet biology. Since TGFbeta is involved in differentiation and immune modulation, this novel pathway may link glucose metabolism, immune response and development of human islets. We report here the first gene expression profile of intact human islets. These and similar analyses will provide better understanding of human islet biology and enhance the development of novel diabetes therapies.
- Published
- 2002
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41. Acetylation of nucleosomal histones by p300 facilitates transcription from tax-responsive human T-cell leukemia virus type 1 chromatin template.
- Author
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Lu H, Pise-Masison CA, Fletcher TM, Schiltz RL, Nagaich AK, Radonovich M, Hager G, Cole PA, and Brady JN
- Subjects
- Acetylation, CREB-Binding Protein, Chromatin metabolism, Cyclic AMP Response Element-Binding Protein genetics, Cyclic AMP Response Element-Binding Protein metabolism, Gene Products, tax genetics, HeLa Cells, Humans, Nuclear Proteins genetics, Nucleosomes genetics, Nucleosomes metabolism, Precipitin Tests, Promoter Regions, Genetic, RNA Polymerase II genetics, RNA Polymerase II metabolism, Response Elements genetics, Templates, Genetic, Terminal Repeat Sequences, Trans-Activators genetics, Transcription Factor TFIID, Transcription Factors, TFII genetics, Transcription Factors, TFII metabolism, Transcription, Genetic, Chromatin genetics, Gene Products, tax metabolism, Histones metabolism, Human T-lymphotropic virus 1 genetics, Nuclear Proteins metabolism, Trans-Activators metabolism
- Abstract
Expression of human T-cell leukemia virus type 1 (HTLV-1) is regulated by the viral transcriptional activator Tax. Tax activates viral transcription through interaction with the cellular transcription factor CREB and the coactivators CBP/p300. One key property of the coactivators is the presence of histone acetyltransferase (HAT) activity, which enables p300/CBP to modify nucleosome structure. The data presented in this manuscript demonstrate that full-length p300 and CBP facilitate transcription of a reconstituted chromatin template in the presence of Tax and CREB. The ability of p300 and CBP to activate transcription from the chromatin template is dependent upon the HAT activity. Moreover, the coactivator HAT activity must be tethered to the template by Tax and CREB, since a p300 mutant that fails to interact with Tax did not facilitate transcription or acetylate histones. p300 acetylates histones H3 and H4 within nucleosomes located in the promoter and 5' proximal regions of the template. Nucleosome acetylation is accompanied by an increase in the level of binding of RNA polymerase II transcription factor TFIID and RNA polymerase II to the promoter. Interestingly, we found distinct transcriptional activities between CBP and p300. CBP, but not p300, possesses an N-terminal activation domain which directly activates Tax-mediated HTLV-1 transcription from a naked DNA template. Finally, using the chromatin immunoprecipitation assay, we provide the first direct experimental evidence that p300 and CBP are associated with the HTLV-1 long terminal repeat in vivo.
- Published
- 2002
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42. Transcription profile of cells infected with human T-cell leukemia virus type I compared with activated lymphocytes.
- Author
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Pise-Masison CA, Radonovich M, Mahieux R, Chatterjee P, Whiteford C, Duvall J, Guillerm C, Gessain A, and Brady JN
- Subjects
- Apoptosis genetics, Cell Cycle Proteins biosynthesis, Cell Cycle Proteins genetics, Cell Transformation, Viral genetics, Cell Transformation, Viral immunology, Cells, Cultured, Cytokines biosynthesis, Cytokines genetics, Gene Expression Profiling, Gene Expression Regulation, Gene Expression Regulation, Viral, Human T-lymphotropic virus 1 metabolism, Humans, Interleukin-2 Receptor alpha Subunit, Jurkat Cells metabolism, Jurkat Cells physiology, RNA, Messenger biosynthesis, RNA, Messenger genetics, Receptors, Interleukin biosynthesis, Receptors, Interleukin genetics, T-Lymphocytes immunology, T-Lymphocytes metabolism, Transcription Factors biosynthesis, Transcription Factors genetics, Transcription, Genetic, Transfection, Human T-lymphotropic virus 1 genetics, Lymphocyte Activation genetics, T-Lymphocytes physiology, T-Lymphocytes virology
- Abstract
Human T-cell leukemia virus type I (HTLV-I) is the etiologic agent for adult T-cell leukemia and the neurological disorder tropical spastic paraparesis/HTLV-I-associated myelopathy. CD4+ T lymphocytes, the primary hosts for HTLV-I, undergo a series of changes that lead to T-cell activation, immortalization, and transformation. To gain insight into the genetic differences between activated and HTLV-I-infected lymphocytes, we performed Affymetrix GeneChip analysis of activated and HTLV-I-infected cells. Using the Hu6800 GeneChip, we identified approximately 763 genes that had differentially regulated expression in at least three of five HTLV-I cell lines. Classification of these genes into functional groups including cellular receptors, kinases, phosphatases, cytokines, signal proteins, and transcription factors provides insight into genes and pathways that are differentially regulated during HTLV-I transformation.
- Published
- 2002
43. Saccharomyces cerevisiae protein Pci8p and human protein eIF3e/Int-6 interact with the eIF3 core complex by binding to cognate eIF3b subunits.
- Author
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Shalev A, Valásek L, Pise-Masison CA, Radonovich M, Phan L, Clayton J, He H, Brady JN, Hinnebusch AG, and Asano K
- Subjects
- Binding Sites, COP9 Signalosome Complex, Gene Expression Profiling, Humans, Multiprotein Complexes, Peptide Hydrolases, Prokaryotic Initiation Factor-3, Protein Subunits, Proteins physiology, RNA, Messenger analysis, Transcription, Genetic, Eukaryotic Initiation Factor-3 metabolism, Fungal Proteins metabolism, Peptide Initiation Factors metabolism, Proto-Oncogene Proteins metabolism, Saccharomyces cerevisiae chemistry
- Abstract
Mammalian, plant, and Schizosaccharomyces pombe eukaryotic initiation factor-3 (eIF3) contains a protein homologous to the product of int-6 (eIF3e), a frequent integration site of mouse mammary tumor viruses. By contrast, Saccharomyces cerevisiae does not encode a protein closely related to eIF3e/Int-6. Here, we characterize a novel S. cerevisiae protein (Pci8p, Yil071cp) that contains a PCI (proteasome-COP9 signalosome-eIF3) domain conserved in eIF3e/Int-6. We show that both Pci8p and human eIF3e/Int-6 expressed in budding yeast interact with the yeast eIF3 complex in vivo and in vitro by binding to a discrete segment of its eIF3b subunit Prt1p and that human eIF3e/Int-6 interacts with the human eIF3b segment homologous to the Pci8p-binding site of yeast Prt1p. These results refine our understanding of subunit interactions in the eIF3 complex and suggest structural similarity between human eIF3e/Int-6 and yeast Pci8p. However, deletion of PCI8 had no discernible effect on cell growth or translation initiation as judged by polysome analysis, suggesting that Pci8p is not required for the essential function of eIF3 in translation initiation. Motivated by the involvement of Int-6 in transcriptional control, we investigated the effects of deleting PCI8 on the total mRNA expression profile by oligonucleotide microarray analysis and found reduced mRNA levels for a subset of heat shock proteins in the pci8Delta mutant. We discuss possible dual functions of Pci8p and Int-6 in transcriptional and translational control.
- Published
- 2001
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44. 9-Nitrocamptothecin inhibits HIV-1 replication in human peripheral blood lymphocytes: a potential alternative for HIV-infection/AIDS therapy.
- Author
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Hung CL, Doniger J, Palini A, Snyder SW, Radonovich MF, Brady JN, Pantazis P, and Sadaie MR
- Subjects
- Acquired Immunodeficiency Syndrome drug therapy, Anti-HIV Agents administration & dosage, Apoptosis drug effects, Camptothecin administration & dosage, Camptothecin analogs & derivatives, Cell Cycle drug effects, Cell Survival drug effects, Cells, Cultured, Dose-Response Relationship, Drug, Flow Cytometry, HIV Infections drug therapy, HIV Infections virology, Humans, Kinetics, Lymphocytes drug effects, Virus Replication drug effects, Anti-HIV Agents pharmacology, Camptothecin pharmacology, HIV Reverse Transcriptase antagonists & inhibitors, HIV-1 drug effects, Lymphocytes virology, Reverse Transcriptase Inhibitors pharmacology
- Abstract
The ability of the anti-cancer drug, 9-Nitrocamptothecin (9NC), to inhibit replication of HIV-1 in clinically relevant primary lymphocytic cells was studied. Primary peripheral blood lymphocytes (PBLs) from a non-infected donor were freshly infected with HIV-1 and treated with 9NC by using three different treatment schedules. Cells were monitored for cytotoxicity by the XTT metabolic cell proliferation assay and a sensitive flow cytometric assay that was capable of measuring cell cycle changes and apoptosis. 9NC inhibited replication of HIV-1 in PBLs by greater than 95% in a dose-dependent manner as measured by the level of extracellular HIV-1 p24 release. Similar results were observed, whether 9NC was applied in a single, double, or triple dose regimen. Minimal cytotoxicity was observed for both non-infected and infected PBLs, as determined by the XTT assay. Moreover, 9NC induced apoptosis within 24 hours of drug treatment in freshly infected, but not non-infected, PBLs. The data showed that 9NC reduced replication of HIV-1 in primary human lymphocytes; thus, it indicates the potential clinical utility of this drug as an alternative or adjunct therapy for HIV-infection/AIDS., (Copyright 2001 Wiley-Liss, Inc.)
- Published
- 2001
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45. Expression profiling of acetaminophen liver toxicity in mice using microarray technology.
- Author
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Reilly TP, Bourdi M, Brady JN, Pise-Masison CA, Radonovich MF, George JW, and Pohl LR
- Subjects
- Animals, Base Sequence, DNA Primers, Liver metabolism, Mice, Molecular Sequence Data, Acetaminophen toxicity, Gene Expression Profiling, Liver drug effects, Oligonucleotide Array Sequence Analysis
- Abstract
Drug-induced hepatotoxicity causes significant morbidity and mortality and is a major concern in drug development. This is due, in large part, to insufficient knowledge of the mechanism(s) of drug-induced liver injury. In order to address this problem, we have evaluated the modulation of gene expression within the livers of mice treated with a hepatotoxic dose of acetaminophen (APAP) using high-density oligonucleotide microarrays capable of determining the expression profile of >11,000 genes and expressed sequence tags (ESTs). Significant alterations in gene expression, both positive and negative, were noted within the livers of APAP-treated mice. APAP-induced toxicity affected numerous aspects of liver physiology causing, for instance, >twofold increased expression of genes that encode for growth arrest and cell cycle regulatory proteins, stress-induced proteins, the transcription factor LRG-21, suppressor of cytokine signaling (SOCS)-2-protein, and plasminogen activator inhibitor-1 (PAI-1). A number of these and other genes and ESTs were detectable within the liver only after APAP treatment suggesting their potential importance in propagating or preventing further toxicity. These data provide new directions for mechanistic studies that may lead to a better understanding of the molecular basis of drug-induced liver injury and, ultimately, to a more rational design of safer drugs., (Copyright 2001 Academic Press.)
- Published
- 2001
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46. Human T-lymphotropic virus type I Tax protein utilizes distinct pathways for p53 inhibition that are cell type-dependent.
- Author
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Pise-Masison CA, Mahieux R, Radonovich M, Jiang H, and Brady JN
- Subjects
- Acetyltransferases genetics, Acetyltransferases metabolism, Activating Transcription Factor 1, Cell Cycle Proteins genetics, Cell Cycle Proteins metabolism, Cell Line, Transformed, Cyclic AMP Response Element-Binding Protein metabolism, Gene Products, tax genetics, Genes, Reporter, Histone Acetyltransferases, Humans, Lymphocytes metabolism, Lymphocytes virology, NF-kappa B metabolism, Organ Specificity, Phosphorylation, Transcription Factors metabolism, Transcriptional Activation, Transfection, Tumor Cells, Cultured, Tumor Suppressor Protein p53 metabolism, p300-CBP Transcription Factors, DNA-Binding Proteins, Gene Products, tax metabolism, Human T-lymphotropic virus 1 physiology, Signal Transduction, Tumor Suppressor Protein p53 antagonists & inhibitors
- Abstract
p53 plays a pivotal role in transmitting signals from many forms of genotoxic stress to genes and factors that control the cell cycle and apoptosis. We have previously shown that the human T-lymphotropic virus type I Tax protein can inhibit p53 function. Recently we reported that Tax inhibits p53 function in Jurkat cells and mouse embryo fibroblasts through a mechanism involving the nuclear factor kappa B pathway and correlates with phosphorylation on serines 15 and 392 of p53. However, several groups have also observed a mechanism that correlates with p300 binding of Tax. To address this controversy and to determine the mechanism by which Tax inhibits p53 function, we examined the activation functions of Tax required for p53 inhibition. In HeLa and H1299 cells the cAMP-response element-binding protein/activating transcription factor activation function is essential, as demonstrated by the Tax mutants M47 and K88A. In addition, expression of exogenous p300 in H1299 cells allows full recovery of p53 transactivation in the presence of Tax. Consistent with p300 being a limiting factor in H1299, Saos-2, and HeLa cells, we found that the level of endogenous p300 is relatively low in these cells compared with Jurkat cells or the human T-lymphotropic virus type I-infected C81 and MT2 cells. Thus our data suggests that Tax utilizes distinct mechanisms to inhibit p53 function that are cell type-dependent.
- Published
- 2001
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47. Tat modifies the activity of CDK9 to phosphorylate serine 5 of the RNA polymerase II carboxyl-terminal domain during human immunodeficiency virus type 1 transcription.
- Author
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Zhou M, Halanski MA, Radonovich MF, Kashanchi F, Peng J, Price DH, and Brady JN
- Subjects
- Biotin metabolism, Cyclin-Dependent Kinase 9, Cyclin-Dependent Kinases drug effects, Dichlororibofuranosylbenzimidazole pharmacology, Enzyme Inhibitors pharmacology, HIV Long Terminal Repeat, Humans, Phosphorylation drug effects, Positive Transcriptional Elongation Factor B, Protein Serine-Threonine Kinases genetics, Protein Serine-Threonine Kinases metabolism, RNA Polymerase II antagonists & inhibitors, Recombinant Proteins genetics, Recombinant Proteins metabolism, Serine metabolism, Substrate Specificity, Templates, Genetic, tat Gene Products, Human Immunodeficiency Virus, Cyclin-Dependent Kinase-Activating Kinase, Cyclin-Dependent Kinases metabolism, Gene Products, tat metabolism, HIV-1 genetics, RNA Polymerase II metabolism, Transcription, Genetic
- Abstract
Tat stimulates human immunodeficiency virus type 1 (HIV-1) transcriptional elongation by recruitment of carboxyl-terminal domain (CTD) kinases to the HIV-1 promoter. Using an immobilized DNA template assay, we have analyzed the effect of Tat on kinase activity during the initiation and elongation phases of HIV-1 transcription. Our results demonstrate that cyclin-dependent kinase 7 (CDK7) (TFIIH) and CDK9 (P-TEFb) both associate with the HIV-1 preinitiation complex. Hyperphosphorylation of the RNA polymerase II (RNAP II) CTD in the HIV-1 preinitiation complex, in the absence of Tat, takes place at CTD serine 2 and serine 5. Analysis of preinitiation complexes formed in immunodepleted extracts suggests that CDK9 phosphorylates serine 2, while CDK7 phosphorylates serine 5. Remarkably, in the presence of Tat, the substrate specificity of CDK9 is altered, such that the kinase phosphorylates both serine 2 and serine 5. Tat-induced CTD phosphorylation by CDK9 is strongly inhibited by low concentrations of 5, 6-dichloro-1-beta-D-ribofuranosylbenzimidazole, an inhibitor of transcription elongation by RNAP II. Analysis of stalled transcription elongation complexes demonstrates that CDK7 is released from the transcription complex between positions +14 and +36, prior to the synthesis of transactivation response (TAR) RNA. In contrast, CDK9 stays associated with the complex through +79. Analysis of CTD phosphorylation indicates a biphasic modification pattern, one in the preinitiation complex and the other between +36 and +79. The second phase of CTD phosphorylation is Tat-dependent and TAR-dependent. These studies suggest that the ability of Tat to increase transcriptional elongation may be due to its ability to modify the substrate specificity of the CDK9 complex.
- Published
- 2000
- Full Text
- View/download PDF
48. Inactivation of p53 by human T-cell lymphotropic virus type 1 Tax requires activation of the NF-kappaB pathway and is dependent on p53 phosphorylation.
- Author
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Pise-Masison CA, Mahieux R, Jiang H, Ashcroft M, Radonovich M, Duvall J, Guillerm C, and Brady JN
- Subjects
- Animals, E1A-Associated p300 Protein, Fibroblasts cytology, Fibroblasts metabolism, Gene Products, tax genetics, Humans, I-kappa B Proteins genetics, Jurkat Cells, Mice, Mice, Knockout, Mutation, Nuclear Proteins metabolism, Phosphorylation, T-Lymphocytes cytology, T-Lymphocytes metabolism, Trans-Activators metabolism, Transcription Factor RelA, Gene Products, tax metabolism, Human T-lymphotropic virus 1 metabolism, NF-kappa B metabolism, Tumor Suppressor Protein p53 genetics
- Abstract
p53 plays a key role in guarding cells against DNA damage and transformation. We previously demonstrated that the human T-cell lymphotropic virus type 1 (HTLV-1) Tax can inactivate p53 transactivation function in lymphocytes. The present study demonstrates that in T cells, Tax-induced p53 inactivation is dependent upon NF-kappaB activation. Analysis of Tax mutants demonstrated that Tax inactivation of p53 function correlates with the ability of Tax to induce NF-kappaB but not p300 binding or CREB transactivation. The Tax-induced p53 inactivation can be overcome by overexpression of a dominant IkappaB mutant. Tax-NF-kappaB-induced p53 inactivation is not due to p300 squelching, since overexpression of p300 does not recover p53 activity in the presence of Tax. Further, using wild-type and p65 knockout mouse embryo fibroblasts (MEFs), we demonstrate that the p65 subunit of NF-kappaB is critical for Tax-induced p53 inactivation. While Tax can inactivate endogenous p53 function in wild-type MEFs, it fails to inactivate p53 function in p65 knockout MEFs. Importantly, Tax-induced p53 inactivation can be restored by expression of p65 in the knockout MEFs. Finally, we present evidence that phosphorylation of serines 15 and 392 correlates with inactivation of p53 by Tax in T cells. This study provides evidence that the divergent NF-kappaB proliferative and p53 cell cycle arrest pathways may be cross-regulated at several levels, including posttranslational modification of p53.
- Published
- 2000
- Full Text
- View/download PDF
49. Phosphorylation of p53: a novel pathway for p53 inactivation in human T-cell lymphotropic virus type 1-transformed cells.
- Author
-
Pise-Masison CA, Radonovich M, Sakaguchi K, Appella E, and Brady JN
- Subjects
- Binding Sites, Cell Line, Transformed, Human T-lymphotropic virus 1 genetics, Humans, Phosphorylation, Protein Conformation, Proto-Oncogene Proteins metabolism, Proto-Oncogene Proteins c-mdm2, Serine metabolism, Transcription Factor TFIID, Transcription Factors, TFII metabolism, Transcriptional Activation, Tumor Cells, Cultured, Tumor Suppressor Protein p53 chemistry, Cell Transformation, Viral, Human T-lymphotropic virus 1 physiology, Nuclear Proteins, Tumor Suppressor Protein p53 metabolism
- Abstract
Inhibition of p53 function, through either mutation or interaction with viral or cellular transforming proteins, correlates strongly with the oncogenic potential. Only a small percentage of human T-cell lymphotropic virus type 1 (HTLV-1)-transformed cells carry p53 mutations, and mutated p53 genes have been found in only one-fourth of adult T-cell leukemia cases. In previous studies, we demonstrated that wild-type p53 is stabilized and transcriptionally inactive in HTLV-1-transformed cells. Further, the viral transcriptional activator Tax plays a role in both the stabilization and inactivation of p53 through a mechanism involving the first 52 amino acids of p53. Here we show for the first time that phosphorylation of p53 inactivates p53 by blocking its interaction with basal transcription factors. Using two-dimensional peptide mapping, we demonstrate that peptides corresponding to amino acids 1 to 19 and 387 to 393 are hyperphosphorylated in HTLV-1-transformed cells. Moreover, using antibodies specific for phosphorylated Ser15 and Ser392, we demonstrate increased phosphorylation of these amino acids. Since HTLV-1 p53 binds DNA in a sequence-specific manner but fails to interact with TFIID, we tested whether phosphorylation of the N terminus of p53 affected p53-TFIID interaction. Using biotinylated peptides, we show that phosphorylation of Ser15 alone inhibits p53-TFIID interaction. In contrast, phosphorylation at Ser15 and -37 restores TFIID binding and blocks MDM2 binding. Our studies provide evidence that HTLV-1 utilizes the posttranslational modification of p53 in vivo to inactivate function of the tumor suppressor protein.
- Published
- 1998
- Full Text
- View/download PDF
50. Inhibition of p53 transactivation function by the human T-cell lymphotropic virus type 1 Tax protein.
- Author
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Pise-Masison CA, Choi KS, Radonovich M, Dittmer J, Kim SJ, and Brady JN
- Subjects
- Cell Line, Transformed, Humans, Transcriptional Activation, Cell Transformation, Viral genetics, Gene Expression Regulation, Viral, Gene Products, tax genetics, Human T-lymphotropic virus 1 genetics, Tumor Suppressor Protein p53 genetics
- Abstract
Human T-cell lymphotropic virus type 1 (HTLV-1) is the etiologic agent for adult T-cell leukemia. HTLV-1 transforms lymphocytes, and there is increasing evidence that the virus-encoded protein, Tax, plays a primary role in viral transformation. We have shown that wild-type p53 in HTLV-1-transformed cells is stabilized. This study was initiated to directly analyze whether the p53 in HTLV-1-transformed cell lines was transcriptionally active and to identify the viral gene product responsible for stabilization and inactivation. Transfection experiments using a p53-responsive reporter plasmid and gamma-irradiation studies demonstrate that the wild-type p53 in HTLV-1-transformed cell lines is not fully active. Further, we demonstrate that the HTLV-1-transforming protein, Tax, stabilizes and inactivates p53 function. Cotransfection of Tax with p53 results in a greater than 10-fold reduction in p53 transcription activity. Using Ga14-p53 fusion proteins, we demonstrate that Tax inhibition of p53 transactivation function is independent of sequence-specific DNA binding. Moreover, Tax inhibits p53 function by interfering with the activity of the N-terminal activation domain (amino acids 1 to 52). We conclude that Tax is involved in the inactivation of p53 function and stabilization of p53 in HTLV-1-infected cells. The functional interference of p53 function by Tax may be important for transformation and leukemogenesis.
- Published
- 1998
- Full Text
- View/download PDF
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