261 results on '"R. Akram"'
Search Results
2. Computational Fluorescence Suppression in Shifted Excitation Raman Spectroscopy.
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Nia C. Jenkins, Katjana Ehrlich, András Kufcsák, Stephanos Yerolatsitis, Susan Fernandes, Irene Young, Katie Hamilton, Harry A. C. Wood, Tom Quinn, Vikki Young, Ahsan R. Akram, James M. Stone, Robert R. Thomson, Keith Finlayson, Kevin Dhaliwal, and Sohan Seth
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- 2023
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3. Optimizing the implementation of lung cancer screening in Scotland: Focus group participant perspectives in the LUNGSCOT study
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Debbie Cavers, Mia Nelson, Jasmin Rostron, Kathryn A. Robb, Lynsey R. Brown, Christine Campbell, Ahsan R. Akram, Graeme Dickie, Melanie Mackean, Edwin J. R. vanBeek, Frank Sullivan, Robert J. Steele, Aileen R. Neilson, and David Weller
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early detection ,focus group ,lung cancer ,lung screening ,qualitative ,screening ,Medicine (General) ,R5-920 ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Introduction Targeted lung cancer screening is effective in reducing lung cancer and all‐cause mortality according to major trials in the United Kingdom and Europe. However, the best ways of implementing screening in local communities requires an understanding of the population the programme will serve. We undertook a study to explore the views of those potentially eligible for, and to identify potential barriers and facilitators to taking part in, lung screening, to inform the development of a feasibility study. Methods Men and women aged 45–70, living in urban and rural Scotland, and either self‐reported people who smoke or who recently quit, were invited to take part in the study via research agency Taylor McKenzie. Eleven men and 14 women took part in three virtual focus groups exploring their views on lung screening. Focus group transcripts were transcribed and analysed using thematic analysis, assisted by QSR NVivo. Findings Three overarching themes were identified: (1) Knowledge, awareness and acceptability of lung screening, (2) Barriers and facilitators to screening and (3) Promoting screening and implementation ideas. Participants were largely supportive of lung screening in principle and described the importance of the early detection of cancer. Emotional and psychological concerns as well as system‐level and practical issues were discussed as posing barriers and facilitators to lung screening. Conclusions Understanding the views of people potentially eligible for a lung health check can usefully inform the development of a further study to test the feasibility and acceptability of lung screening in Scotland. Patient or Public Contribution The LUNGSCOT study has convened a patient advisory group to advise on all aspects of study development and implementation. Patient representatives commented on the focus group study design, study materials and ethics application, and two representatives read the focus group transcripts.
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- 2022
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4. Understanding patient barriers and facilitators to uptake of lung screening using low dose computed tomography: a mixed methods scoping review of the current literature
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Debbie Cavers, Mia Nelson, Jasmin Rostron, Kathryn A. Robb, Lynsey R. Brown, Christine Campbell, Ahsan R. Akram, Graeme Dickie, Melanie Mackean, Edwin J. R. van Beek, Frank Sullivan, Robert J. Steele, Aileen R. Neilson, and David Weller
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Scoping review ,Lung cancer screening ,Mixed methods ,Early detection ,Respiratory health ,Cancer screening ,Diseases of the respiratory system ,RC705-779 - Abstract
Abstract Background Targeted lung cancer screening is effective in reducing mortality by upwards of twenty percent. However, screening is not universally available and uptake is variable and socially patterned. Understanding screening behaviour is integral to designing a service that serves its population and promotes equitable uptake. We sought to review the literature to identify barriers and facilitators to screening to inform the development of a pilot lung screening study in Scotland. Methods We used Arksey and O’Malley’s scoping review methodology and PRISMA-ScR framework to identify relevant literature to meet the study aims. Qualitative, quantitative and mixed methods primary studies published between January 2000 and May 2021 were identified and reviewed by two reviewers for inclusion, using a list of search terms developed by the study team and adapted for chosen databases. Results Twenty-one articles met the final inclusion criteria. Articles were published between 2003 and 2021 and came from high income countries. Following data extraction and synthesis, findings were organised into four categories: Awareness of lung screening, Enthusiasm for lung screening, Barriers to lung screening, and Facilitators or ways of promoting uptake of lung screening. Awareness of lung screening was low while enthusiasm was high. Barriers to screening included fear of a cancer diagnosis, low perceived risk of lung cancer as well as practical barriers of cost, travel and time off work. Being health conscious, provider endorsement and seeking reassurance were all identified as facilitators of screening participation. Conclusions Understanding patient reported barriers and facilitators to lung screening can help inform the implementation of future lung screening pilots and national lung screening programmes.
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- 2022
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5. Deep learning-assisted co-registration of full-spectral autofluorescence lifetime microscopic images with H&E-stained histology images
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Qiang Wang, Susan Fernandes, Gareth O. S. Williams, Neil Finlayson, Ahsan R. Akram, Kevin Dhaliwal, James R. Hopgood, and Marta Vallejo
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Biology (General) ,QH301-705.5 - Abstract
Using unsupervised image-to-image synthesis, homography regression-based co-registration of fluorescence-histology images is improved and can be used on various image formats across full-spectral emission wavelengths.
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- 2022
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6. Location of CD39+ T cell subpopulations within tumors predict differential outcomes in non-small cell lung cancer
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Richard O’Connor, David A Dorward, Ahsan R Akram, Lilian Koppensteiner, Layla Mathieson, and Samuel Pattle
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Purpose An improved mechanistic understanding of immunosuppressive pathways in non-small cell lung cancer (NSCLC) is important to develop novel diagnostic and therapeutic approaches. Here, we investigate the prognostic significance of the ectonucleotidases CD39 and CD73 in NSCLC.Experimental design The expression and localization of CD39, CD73 and CD103 was digitally quantified in a cohort of 162 early treatment naïve NSCLC patients using multiplex-immunofluorescence and related to patient outcome. Expression among different cell-populations was assessed via flow cytometry. Targeted RNA-Seq was performed on CD4+ and CD8+ T cells from digested NSCLC tumor tissue and single-cell RNA-Seq data was analyzed to investigate the functional significance of CD39+ T cell populations.Results We demonstrate that flow cytometry of early untreated NSCLC patients shows an upregulation of CD39 expression in the tumor tissue among natural killer (NK) cells, fibroblasts and T cells. CD73 expression is mainly found among fibroblasts and Epcam+cells in the tumor tissue. Multiplex Immunofluorescence in a cohort of 162 early untreated NSCLC patients demonstrates that CD39 expression is mainly localized in the tumor stroma while CD73 expression is equally distributed between tumor nest and stroma, and high expression of CD39 and CD73 in the tumor stroma is associated with poor recurrence-free survival (RFS) at 5 years. Additionally, we find that CD8+T cells located in the tumor nest express CD103 and the density of CD39+CD103+CD8+ T cells in the tumor nest predicts improved RFS at 5 years. Targeted RNA-Seq shows that the tumor microenvironment of NSCLC upregulates regulatory pathways in CD4+ T cells and exhaustion in CD8+ T cells, and analysis of a single cell RNA sequencing dataset shows that CD39+CD4+ cells are enriched in Treg signature gene-sets, and CD39+CD103+ cytotoxic T lymphocyte show gene signatures indicative of an exhausted cytotoxic phenotype with upregulated expression of CXCL13.Conclusions Knowledge of patterns of distribution and location are required to understand the prognostic impact of CD39+ T cell populations in NSCLC. This study provides an improved understanding of spatial and functional characteristics of CD39+ T cells and their significance to patient outcome.
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- 2023
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7. Cancer-associated fibroblasts drive CXCL13 production in activated T cells via TGF-beta
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Richard A. O’Connor, Begoña Roman Martinez, Lilian Koppensteiner, Layla Mathieson, and Ahsan R. Akram
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cancer associated fibroblast ,T cell ,CXCL13 ,Treg ,non-small cell lung cancer ,Immunologic diseases. Allergy ,RC581-607 - Abstract
IntroductionTumour-reactive T cells producing the B-cell attractant chemokine CXCL13, in solid tumours, promote development of tertiary lymphoid structures (TLS) and are associated with improved prognosis and responsiveness to checkpoint immunotherapy. Cancer associated fibroblasts are the dominant stromal cell type in non-small cell lung cancer (NSCLC) where they co-localise with T cells and can influence T cell activation and exhaustion. We questioned whether CAF directly promote CXCL13-production during T cell activation.MethodsWe characterised surface markers, cytokine production and transcription factor expression in CXCL13-producing T cells in NSCLC tumours and paired non-cancerous lung samples using flow cytometry. We then assessed the influence of human NSCLC-derived primary CAF lines on T cells from healthy donors and NSCLC patients during activation in vitro measuring CXCL13 production and expression of cell-surface markers and transcription factors by flow cytometry.ResultsCAFs significantly increased the production of CXCL13 by both CD4+ and CD8+ T cells. CAF-induced CXCL13-producing cells lacked expression of CXCR5 and BCL6 and displayed a T peripheral helper cell phenotype. Furthermore, we demonstrate CXCL13 production by T cells is induced by TGF-β and limited by IL-2. CAF provide TGF-β during T cell activation and reduce availability of IL-2 both directly (by reducing the capacity for IL-2 production) and indirectly, by expanding a population of activated Treg. Inhibition of TGF-β signalling prevented both CAF-driven upregulation of CXCL13 and Treg expansion.DiscussionPromoting CXCL13 production represents a newly described immune-regulatory function of CAF with the potential to shape the immune infiltrate of the tumour microenvironment both by altering the effector-function of tumour infiltrating T-cells and their capacity to attract B cells and promote TLS formation.
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- 2023
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8. Quantitative proteomics identifies tumour matrisome signatures in patients with non-small cell lung cancer
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Helen F. Titmarsh, Alex von Kriegsheim, Jimi C. Wills, Richard A. O’Connor, Kevin Dhaliwal, Margaret C. Frame, Samuel B. Pattle, David A. Dorward, Adam Byron, and Ahsan R. Akram
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non-small cell lung cancer ,matrisome ,mass spectrometry ,peroxidasin ,ADAMTS16 ,lysine hydroxylation ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
IntroductionThe composition and remodelling of the extracellular matrix (ECM) are important factors in the development and progression of cancers, and the ECM is implicated in promoting tumour growth and restricting anti-tumour therapies through multiple mechanisms. The characterisation of differences in ECM composition between normal and diseased tissues may aid in identifying novel diagnostic markers, prognostic indicators and therapeutic targets for drug development.MethodsUsing tissue from non-small cell lung cancer (NSCLC) patients undergoing curative intent surgery, we characterised quantitative tumour-specific ECM proteome signatures by mass spectrometry.ResultsWe identified 161 matrisome proteins differentially regulated between tumour tissue and nearby non-malignant lung tissue, and we defined a collagen hydroxylation functional protein network that is enriched in the lung tumour microenvironment. We validated two novel putative extracellular markers of NSCLC, the collagen cross-linking enzyme peroxidasin and a disintegrin and metalloproteinase with thrombospondin motifs 16 (ADAMTS16), for discrimination of malignant and non-malignant lung tissue. These proteins were up-regulated in lung tumour samples, and high PXDN and ADAMTS16 gene expression was associated with shorter survival of lung adenocarcinoma and squamous cell carcinoma patients, respectively.DiscussionThese data chart extensive remodelling of the lung extracellular niche and reveal tumour matrisome signatures in human NSCLC.
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- 2023
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9. A layer-level multi-scale architecture for lung cancer classification with fluorescence lifetime imaging endomicroscopy.
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Qiang Wang 0028, James R. Hopgood, Susan Fernandes, Neil Finlayson, Gareth O. S. Williams, Ahsan R. Akram, Kevin Dhaliwal, and Marta Vallejo
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- 2022
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10. A fluorogenic probe for granzyme B enables in-biopsy evaluation and screening of response to anticancer immunotherapies
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Jamie I. Scott, Lorena Mendive-Tapia, Doireann Gordon, Nicole D. Barth, Emily J. Thompson, Zhiming Cheng, David Taggart, Takanori Kitamura, Alberto Bravo-Blas, Edward W. Roberts, Jordi Juarez-Jimenez, Julien Michel, Berber Piet, I. Jolanda de Vries, Martijn Verdoes, John Dawson, Neil O. Carragher, Richard A. O’ Connor, Ahsan R. Akram, Margaret Frame, Alan Serrels, and Marc Vendrell
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Science - Abstract
Granzyme B is found in activated T cells and can be used as a marker of T cell activation. Here, the authors generate a fluorescent probe that can detect Granzyme B levels in tumours, and has the potential to be used as a biomarker of response to immunotherapy.
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- 2022
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11. Nail-Patella Syndrome: Optical Coherence Tomography Angiography Findings
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Hafsa Z. Zuberi, Ashika Angirekula, Muhammad R. Akram, and Karanjit S. Kooner
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nail-patella syndrome ,glaucoma ,ocular hypertension ,optical coherence tomography angiography ,Ophthalmology ,RE1-994 - Abstract
We describe a 51-year-old Hispanic female with nail-patella syndrome (NPS), a rare genetic disease with a wide range of systemic features such as nail dysplasia and finger abnormalities, elbow webbing, iliac horn, patellar subluxation, and proteinuria. Some patients additionally have a history of glaucoma and other ocular features such as thick central corneal thickness, Lester’s sign, prominent iris processes, and optic nerve cupping. Our patient had a history of glaucoma suspicion, prominent iris processes, increased cup to disc ratios, tilted optic discs, and tigroid fundi. In addition, we report optical coherence tomography angiography (OCTA) findings of focal areas of poor vessel densities in the macular and circumpapillary regions of both eyes, suggesting early compromised vascular supplies to these areas. Our OCTA findings (which include both structural and vascular details of retina and optic nerve) lend support to the use of this technology in patients with NPS.
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- 2022
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12. Erratum to 'Optical Detection of Distal Lung Enzyme Activity in Human Inflammatory Lung Disease'
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Alicia Megia-Fernandez, Adam Marshall, Ahsan R. Akram, Bethany Mills, Sunay V. Chankeshwara, Emma Scholefield, Amy Miele, Bruce C. McGorum, Chesney Michaels, Nathan Knighton, Tom Vercauteren, Francois Lacombe, Veronique Dentan, Annya M. Bruce, Joanne Mair, Robert Hitchcock, Nik Hirani, Chris Haslett, Mark Bradley, and Kevin Dhaliwal
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Medical technology ,R855-855.5 ,Biotechnology ,TP248.13-248.65 - Published
- 2023
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13. Deep Learning in ex-vivo Lung Cancer Discrimination using Fluorescence Lifetime Endomicroscopic Images.
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Qiang Wang 0028, James R. Hopgood, Neil Finlayson, Gareth O. S. Williams, Susan Fernandes, Elvira Williams, Ahsan R. Akram, Kevin Dhaliwal, and Marta Vallejo
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- 2020
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14. Activated neutrophil fluorescent imaging technique for human lungs
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Thomas H. Craven, Tashfeen Walton, Ahsan R. Akram, Emma Scholefield, Neil McDonald, Adam D.L. Marshall, Duncan C. Humphries, Bethany Mills, Thane A. Campbell, Annya Bruce, Joanne Mair, James W. Dear, David E. Newby, Adam T. Hill, Timothy S. Walsh, Chris Haslett, and Kevin Dhaliwal
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Medicine ,Science - Abstract
Abstract Neutrophil activation is an integral process to acute inflammation and is associated with adverse clinical sequelae. Identification of neutrophil activation in real time in the lungs of patients may permit biological stratification of patients in otherwise heterogenous cohorts typically defined by clinical criteria. No methods for identifying neutrophil activation in real time in the lungs of patients currently exist. We developed a bespoke molecular imaging probe targeting three characteristic signatures of neutrophil activation: pinocytosis, phagosomal alkalinisation, and human neutrophil elastase (HNE) activity. The probe functioned as designed in vitro and ex vivo. We evaluated optical endomicroscopy imaging of neutrophil activity using the probe in real-time at the bedside of healthy volunteers, patients with bronchiectasis, and critically unwell mechanically ventilated patients. We detected a range of imaging responses in vivo reflecting heterogeneity of condition and severity. We corroborated optical signal was due to probe function and neutrophil activation.
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- 2021
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15. Patch-Based Sparse Representation For Bacterial Detection.
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Ahmed Karam Eldaly, Yoann Altmann, Ahsan R. Akram, Antonios Perperidis, Kevin Dhaliwal, and Steve McLaughlin 0001
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- 2019
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16. Randomised controlled trial of intravenous nafamostat mesylate in COVID pneumonitis: Phase 1b/2a experimental study to investigate safety, Pharmacokinetics and Pharmacodynamics
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Tom M. Quinn, Erin E. Gaughan, Annya Bruce, Jean Antonelli, Richard O'Connor, Feng Li, Sarah McNamara, Oliver Koch, Claire MacKintosh, David Dockrell, Timothy Walsh, Kevin G. Blyth, Colin Church, Jürgen Schwarze, Cecilia Boz, Asta Valanciute, Matthew Burgess, Philip Emanuel, Bethany Mills, Giulia Rinaldi, Gareth Hardisty, Ross Mills, Emily Gwyer Findlay, Sunny Jabbal, Andrew Duncan, Sinéad Plant, Adam D.L. Marshall, Irene Young, Kay Russell, Emma Scholefield, Alastair F. Nimmo, Islom B. Nazarov, Grant C. Churchill, James S.O. McCullagh, Kourosh H. Ebrahimi, Colin Ferrett, Kate Templeton, Steve Rannard, Andrew Owen, Anne Moore, Keith Finlayson, Manu Shankar-Hari, John Norrie, Richard A. Parker, Ahsan R. Akram, Daniel C. Anthony, James W. Dear, Nik Hirani, and Kevin Dhaliwal
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Respiratory medicine ,Infectious diseases ,SARS-CoV-2/COVID-19 ,Nafamostat mesylate ,Total manuscript word count ,Medicine ,Medicine (General) ,R5-920 - Abstract
Summary: Background: Many repurposed drugs have progressed rapidly to Phase 2 and 3 trials in COVID19 without characterisation of Pharmacokinetics /Pharmacodynamics including safety data. One such drug is nafamostat mesylate. Methods: We present the findings of a phase Ib/IIa open label, platform randomised controlled trial of intravenous nafamostat in hospitalised patients with confirmed COVID-19 pneumonitis. Patients were assigned randomly to standard of care (SoC), nafamostat or an alternative therapy. Nafamostat was administered as an intravenous infusion at a dose of 0.2 mg/kg/h for a maximum of seven days. The analysis population included those who received any dose of the trial drug and all patients randomised to SoC. The primary outcomes of our trial were the safety and tolerability of intravenous nafamostat as an add on therapy for patients hospitalised with COVID-19 pneumonitis. Findings: Data is reported from 42 patients, 21 of which were randomly assigned to receive intravenous nafamostat. 86% of nafamostat-treated patients experienced at least one AE compared to 57% of the SoC group. The nafamostat group were significantly more likely to experience at least one AE (posterior mean odds ratio 5.17, 95% credible interval (CI) 1.10 – 26.05) and developed significantly higher plasma creatinine levels (posterior mean difference 10.57 micromol/L, 95% CI 2.43–18.92). An average longer hospital stay was observed in nafamostat patients, alongside a lower rate of oxygen free days (rate ratio 0.55–95% CI 0.31–0.99, respectively). There were no other statistically significant differences in endpoints between nafamostat and SoC. PK data demonstrated that intravenous nafamostat was rapidly broken down to inactive metabolites. We observed no significant anticoagulant effects in thromboelastometry. Interpretation: In hospitalised patients with COVID-19, we did not observe evidence of anti-inflammatory, anticoagulant or antiviral activity with intravenous nafamostat, and there were additional adverse events. Funding: DEFINE was funded by LifeArc (an independent medical research charity) under the STOPCOVID award to the University of Edinburgh. We also thank the Oxford University COVID-19 Research Response Fund (BRD00230).
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- 2022
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17. Personalised 3D-Printed Mucoadhesive Gastroretentive Hydrophilic Matrices for Managing Overactive Bladder (OAB)
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Zara Khizer, Muhammad R. Akram, Muhammad Azam Tahir, Weidong Liu, Shan Lou, Barbara R. Conway, and Muhammad Usman Ghori
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3D printing ,gabapentin ,hydrophilic matrices ,extended drug release ,gastroretention ,mucoadhesion ,Medicine ,Pharmacy and materia medica ,RS1-441 - Abstract
Overactive bladder (OAB) is a symptomatic complex condition characterised by frequent urinary urgency, nocturia, and urinary incontinence with or without urgency. Gabapentin is an effective treatment for OAB, but its narrow absorption window is a concern, as it is preferentially absorbed from the upper small intestine, resulting in poor bioavailability. We aimed to develop an extended release, intragastric floating system to overcome this drawback. For this purpose, plasticiser-free filaments of PEO (polyethylene oxide) and the drug (gabapentin) were developed using hot melt extrusion. The filaments were extruded successfully with 98% drug loading, possessed good mechanical properties, and successfully produced printed tablets using fused deposition modelling (FDM). Tablets were printed with varying shell numbers and infill density to investigate their floating capacity. Among the seven matrix tablet formulations, F2 (2 shells, 0% infill) showed the highest floating time, i.e., more than 10 h. The drug release rates fell as the infill density and shell number increased. However, F2 was the best performing formulation in terms of floating and release and was chosen for in vivo (pharmacokinetic) studies. The pharmacokinetic findings exhibit improved gabapentin absorption compared to the control (oral solution). Overall, it can be concluded that 3D printing technology is an easy-to-use approach which demonstrated its benefits in developing medicines based on a mucoadhesive gastroretentive strategy, improving the absorption of gabapentin with potential for the improved management of OAB.
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- 2023
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18. Multi-class classification of pulmonary endomicroscopic images.
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Mohammad Rami Koujan, Ahsan R. Akram, Paul McCool, Jody Westerfeld, David Wilson, Kevin Dhaliwal, Steve McLaughlin 0001, and Antonios Perperidis
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- 2018
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19. Texture Descriptors for Classifying Sparse, Irregularly Sampled Optical Endomicroscopy Images.
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Oleksii Leonovych, Mohammad Rami Koujan, Ahsan R. Akram, Jody Westerfeld, David Wilson, Kevin Dhaliwal, Steve McLaughlin 0001, and Antonios Perperidis
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- 2018
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20. Bayesian bacterial detection using irregularly sampled optical endomicroscopy images.
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Ahmed Karam Eldaly, Yoann Altmann, Ahsan R. Akram, Paul McCool, Antonios Perperidis, Kevin Dhaliwal, and Stephen McLaughlin 0001
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- 2019
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21. Defining the road map to a UK national lung cancer screening programme
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Emma L O'Dowd, Richard W Lee, Ahsan R Akram, Emily C Bartlett, Stephen H Bradley, Kate Brain, Matthew E J Callister, Yan Chen, Anand Devaraj, Sinan R Eccles, John K Field, Jesme Fox, Seamus Grundy, Sam M Janes, Martin Ledson, Melanie MacKean, Anne Mackie, Kieran G McManus, Rachael L Murray, Arjun Nair, Samantha L Quaife, Robert Rintoul, Anne Stevenson, Yvonne Summers, Louise S Wilkinson, Richard Booton, David R Baldwin, and Philip Crosbie
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Oncology - Published
- 2023
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22. Optical Detection of Distal Lung Enzyme Activity in Human Inflammatory Lung Disease
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Alicia Megia-Fernandez, Adam Marshall, Ahsan R. Akram, Bethany Mills, Sunay V. Chankeshwara, Emma Scholefield, Amy Miele, Bruce C. McGorum, Chesney Michaels, Nathan Knighton, Tom Vercauteren, Francois Lacombe, Veronique Dentan, Annya M. Bruce, Joanne Mair, Robert Hitchcock, Nik Hirani, Chris Haslett, Mark Bradley, and Kevin Dhaliwal
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Medical technology ,R855-855.5 ,Biotechnology ,TP248.13-248.65 - Abstract
Objective and Impact Statement. There is a need to develop platforms delineating inflammatory biology of the distal human lung. We describe a platform technology approach to detect in situ enzyme activity and observe drug inhibition in the distal human lung using a combination of matrix metalloproteinase (MMP) optical reporters, fibered confocal fluorescence microscopy (FCFM), and a bespoke delivery device. Introduction. The development of new therapeutic agents is hindered by the lack of in vivo in situ experimental methodologies that can rapidly evaluate the biological activity or drug-target engagement in patients. Methods. We optimised a novel highly quenched optical molecular reporter of enzyme activity (FIB One) and developed a translational pathway for in-human assessment. Results. We demonstrate the specificity for matrix metalloproteases (MMPs) 2, 9, and 13 and probe dequenching within physiological levels of MMPs and feasibility of imaging within whole lung models in preclinical settings. Subsequently, in a first-in-human exploratory experimental medicine study of patients with fibroproliferative lung disease, we demonstrate, through FCFM, the MMP activity in the alveolar space measured through FIB One fluorescence increase (with pharmacological inhibition). Conclusion. This translational in situ approach enables a new methodology to demonstrate active drug target effects of the distal lung and consequently may inform therapeutic drug development pathways.
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- 2021
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23. Estimating Bacterial Load in FCFM Imaging.
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Sohan Seth, Ahsan R. Akram, Kevin Dhaliwal, and Christopher K. I. Williams
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- 2017
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24. An Inhaled Galectin-3 Inhibitor in COVID-19 Pneumonitis: A Phase Ib/IIa Randomized Controlled Clinical Trial (DEFINE)
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Erin E. Gaughan, Tom M. Quinn, Andrew Mills, Annya M. Bruce, Jean Antonelli, Alison C. MacKinnon, Vassilios Aslanis, Feng Li, Richard O’Connor, Cecilia Boz, Ross Mills, Philip Emanuel, Matthew Burgess, Giulia Rinaldi, Asta Valanciute, Bethany Mills, Emma Scholefield, Gareth Hardisty, Emily Gwyer Findlay, Richard A. Parker, John Norrie, James W. Dear, Ahsan R. Akram, Oliver Koch, Kate Templeton, David H. Dockrell, Timothy S. Walsh, Stephen Partridge, Duncan Humphries, Jie Wang-Jairaj, Robert J. Slack, Hans Schambye, De Phung, Lise Gravelle, Bertil Lindmark, Manu Shankar-Hari, Nikhil Hirani, Tariq Sethi, and Kevin Dhaliwal
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Pulmonary and Respiratory Medicine ,Critical Care and Intensive Care Medicine - Published
- 2023
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25. The Emerging Role of the c-MET-HGF Axis in Non-small Cell Lung Cancer Tumor Immunology and Immunotherapy
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Helen F. Titmarsh, Richard O'Connor, Kevin Dhaliwal, and Ahsan R. Akram
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c-MET ,HGF ,NSCLC ,cancer immunology ,immunotherapy ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Study of the c-Met-HGF axis in non-small cell lung cancer (NSCLC) has focused on the roles of c-MET signaling in neoplastic epithelial cells and the secretion of its ligand hepatocyte growth factor (HGF) by tumor stromal cells. However, there is increasing evidence that some leukocyte sub-sets also express c-MET raising the possibility of an immunomodulatory role for this axis. Consequently, the role of the c-MET- HGF axis in immunoncology is an active area of ongoing research. This review summarizes current knowledge of c-MET expression in NSCLC, the prognostic significance of these findings and the mechanisms by which the c-MET-HGF axis might act in NSCLC, focusing on the emerging evidence for an immunoregulatory role.
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- 2020
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26. The Iraqi Kurdistan in the Post-Saddam Era: Security, Natural Resources and Foreign Policy Activism
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Akreyi, Hemin R. Akram
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- 2017
27. Automated Detection of Uninformative Frames in Pulmonary Optical Endomicroscopy.
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Antonios Perperidis, Ahsan R. Akram, Yoann Altmann, Paul McCool, Jody Westerfeld, David Wilson, Kevin Dhaliwal, and Stephen McLaughlin 0001
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- 2017
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28. Adaptive Artificial Intelligent Q&A Platform.
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M. R Akram, C. P Singhabahu, M. S. M. Saad, P Deleepa, Anupiya Nugaliyadde, and Yashas Mallawarachchi
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- 2019
29. Cutaneous mucormycosis involving a colostomy site
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Muhammad R Akram, Stanton Miller, and Travis Vandergriff
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Dermatology ,General Medicine - Published
- 2023
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30. Heat transfer analysis of the non-Newtonian polymer in the calendering process with slip effects
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M. A. Javed, R. Akram, Mubbashar Nazeer, and A. Ghaffari
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Statistical and Nonlinear Physics ,Condensed Matter Physics - Abstract
In this paper, a non-isothermal study of the calendering processes is presented using Carreau–Yasuda model along with nonlinear slip condition introduced at the upper roll surface. The flow equations for the problem are developed and converted into dimensionless form with the help of dimensionless variables and then finally simplified by a well-known lubrication approximation theory. The final equations are solved numerically using “bvp4c” to find stream function and velocity profiles, while the hybrid numerical method which is the combination of shooting and finite difference methods is used to solve the energy equation. Graphs show the impact of the concerned material parameters on various quantities of interest. The pressure distribution decreases with the increasing values of the slip parameter and Weissenberg number. The mechanical variables show an increasing trend with the increasing values of the slip parameter and Weissenberg number. The temperature distribution increases with an increase in the Brinkman number, while temperature shows declining trend near the roll surface with the increasing values of the slip parameter. The force separating the two rollers, total power input into both rolls, increase with the increasing values of the Weissenberg number and slip parameters. The results show that the Newtonian model predicts higher pressure in the nip zone than the Carreau–Yasuda model. It is interesting to note that for the case of shear thinning, the Carreau–Yasuda model predicts 30% less pressure in the nip region when compared to the Newtonian model.
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- 2023
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31. Patch-based Sparse Representation For Bacterial Detection.
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Ahmed Karam Eldaly, Yoann Altmann, Ahsan R. Akram, Antonios Perperidis, Kevin Dhaliwal, and Steve McLaughlin 0001
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- 2018
32. Solubility Enhancement of Fe in ZnO Nanoparticles Prepared by Co-Precipitation Method
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R. Akram, Muhammad Musharaf, Ahmet Oral, Ziyad M. Almohaimeed, Muhammad Hassan, Arash Badami Behjat, Uzma Khalique, and Shumaila Karamat
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Materials science ,Dopant ,Transition metal ,Band gap ,Phase (matter) ,Doping ,Analytical chemistry ,Magnetic semiconductor ,Solubility ,Condensed Matter Physics ,Electronic, Optical and Magnetic Materials ,Wurtzite crystal structure - Abstract
Crystalline ZnO offers an excellent host matrix to create a dilute magnetic semiconductor (DMS) owing to its facile Zn-atom substitution with the transition metal dopant atom. The exchange interactions between the spin of the dopant atoms and the carriers in the ZnO matrix results in the room-temperature ferromagnetic order in the entire lattice. In this work, we report on the enhanced solubility (doping) of Fe atoms in ZnO matrix. Zn1-x FexO DMS nanoparticles were synthesized with different doping concentrations (x = 0.01, 0.05, 0.20, 0.22, and 0.25) via a modified version of co-precipitation method, in which the precursors’ solution was heated at 60 ℃ during the stirring process. Only the wurtzite phase was obtained for all Zn1-x FexO samples in X-ray diffraction, and no secondary phase was observed, which supports the idea of an enhanced solubility limit of Fe doping up to 25%. A systematic broadening of the Raman characteristic peak at 525 cm−1 associated with Fe substitution across the entire range of doping accompanied with the suppression of ZnO peak at 371cm−1 and 435 cm−1, supporting the enhanced doping effect further. The bandgap exhibited a systematic trend — it first increased from 3.13 eV for undoped to 3.23 for x = 0.1 and dropped to the value of 2.94 for the highest concentration (x = 0.25) with few in band transitions for high doping. VSM results showed magnetic behavior for all the doped samples at room temperature.
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- 2021
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33. Phototherapeutic Induction of Immunogenic Cell Death and CD8+ T Cell-Granzyme B Mediated Cytolysis in Human Lung Cancer Cells and Organoids
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Asta Valančiūtė, Layla Mathieson, Richard A. O’Connor, Jamie I. Scott, Marc Vendrell, David A. Dorward, Ahsan R. Akram, and Kevin Dhaliwal
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lung cancer ,Cancer Research ,photodynamic therapy ,Oncology ,immunogenic cell death ,organoids - Abstract
Augmenting T cell mediated tumor killing via immunogenic cancer cell death (ICD) is the cornerstone of emerging immunotherapeutic approaches. We investigated the potential of methylene blue photodynamic therapy (MB-PDT) to induce ICD in human lung cancer. Non-Small Cell Lung Cancer (NSCLC) cell lines and primary human lung cancer organoids were evaluated in co-culture killing assays with MB-PDT and light emitting diodes (LEDs). ICD was characterised using immunoblotting, immunofluorescence, flow cytometry and confocal microscopy. Phototherapy with MB treatment and low energy LEDs decreased the proliferation of NSCLC cell lines inducing early necrosis associated with reduced expression of the anti-apoptotic protein, Bcl2 and increased expression of ICD markers, calreticulin (CRT), intercellular cell-adhesion molecule-1 (ICAM-1) and major histocompatibility complex I (MHC-I) in NSCLC cells. MB-PDT also potentiated CD8+ T cell-mediated cytolysis of lung cancer via granzyme B in lung cancer cells and primary human lung cancer organoids.
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- 2022
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34. An Inhaled Galectin-3 Inhibitor in COVID-19 Pneumonitis (DEFINE):A Phase Ib/IIa Randomised Controlled Trial
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Erin E, Gaughan, Tom M, Quinn, Andrew, Mills, Annya M, Bruce, Jean, Antonelli, Alison, MacKinnon, Vassilios, Aslanis, Feng, Li, Richard, O'Connor, Cecilia, Boz, Ross, Mills, Philip, Emanuel, Matthew, Burgess, Giulia, Rinaldi, Asta, Valanciute, Bethany, Mills, Emma, Scholefield, Gareth, Hardisty, Emily, Gwyer Findlay, Richard A, Parker, John, Norrie, James W, Dear, Ahsan R, Akram, Oliver, Koch, Kate, Templeton, David H, Dockrell, Timothy S, Walsh, Stephen, Partridge, Duncan, Humphries, Jie, Wang-Jairaj, Robert J, Slack, Hans, Schambye, De, Phung, Lise, Gravelle, Bertil, Lindmark, Manu, Shankar-Hari, Nikhil, Hirani, Tariq, Sethi, and Kevin, Dhaliwal
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Rationale: High circulating galectin-3 is associated with poor outcomes in patients with COVID-19. We hypothesised that GB0139, a potent inhaled thiodigalactoside galectin-3 inhibitor with anti-inflammatory and antifibrotic actions, would be safely and effectively delivered in COVID-19 pneumonitis. Objectives: Primary outcomes were safety and tolerability of inhaled GB0139 as an add-on therapy for patients hospitalised with COVID-19 pneumonitis. Methods: We present the findings of two arms of a phase Ib/IIa randomised controlled platform trial in hospitalised patients with confirmed COVID-19 pneumonitis. Patients received standard of care (SoC) or SoC plus 10 mg inhaled GB0139 twice daily for 48 hours, then once daily for up to 14 days or discharge. Results: Data are reported from 41 patients, 20 of which were assigned randomly to receive GB0139. Primary outcomes: the GB0139 group experienced no treatment-related serious adverse events. Incidences of adverse events were similar between treatment arms (40 with GB0139+SoC vs 35 with SoC). Secondary outcomes: plasma GB0139 was measurable in all patients after inhaled exposure, and demonstrated target engagement with decreased circulating galectin (overall treatment effect post-hoc ANCOVA over days 2–7: p=0.0099 vs SoC). Plasma biomarkers associated with inflammation, fibrosis, coagulopathy and major organ function were evaluated. Conclusions: In COVID pneumonitis, inhaled GB013 was well-tolerated, achieved clinically relevant plasma concentrations with target engagement. The data support larger clinical trials to determine clinical efficacy. Clinical trial registration available at www.clinicaltrials.gov, ID: NCT04473053. This article is open access and distributed under the terms of the Creative Commons Attribution Non-Commercial No Derivatives License 4.0 (http://creativecommons.org/licenses/by-nc-nd/4.0/).Keywords: Covid-19; Galectin-3; GB0139
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- 2022
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35. Energy Efficient UAV-Enabled Mobile Edge Computing for IoT Devices: A Review
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Ziyad M. Almohaimeed, Ushna Ajmal, Muhammad Abrar, R. Akram, Xiang Gui, and Roha Masroor
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Mobile edge computing ,General Computer Science ,Computer science ,business.industry ,Distributed computing ,Internet of Things ,General Engineering ,resource allocation ,Cloud computing ,TK1-9971 ,Server ,Computation ,offloading ,Computation offloading ,General Materials Science ,Augmented reality ,mobile edge computing ,Electrical engineering. Electronics. Nuclear engineering ,Enhanced Data Rates for GSM Evolution ,business ,energy efficiency ,5G ,Edge computing - Abstract
With the emergence of computation-intensive and delay-sensitive applications, such as face recognition, virtual reality, augmented reality, and Internet of Things (IoT) devices; Mobile Edge Computing (MEC) allows the IoT devices to offload their heavy computation tasks to nearby edge cloud network rather than to compute the tasks locally. Therefore, it helps to reduce the energy consumption and execution delay in the ground mobile users. Flying Unmanned Aerial Vehicles (UAVs) integrated with the MEC server play a key role in 5G and future wireless communication networks to provide spatial coverage and further computational services to the small, battery-powered and energy-constrained devices. The UAV-enabled MEC (U-MEC) system has flexible mobility and more computational capability compared to the terrestrial MEC network. They support line-of-sight (LoS) links with the users offloading their tasks to the UAVs. Hence, users can transmit more data without interference by mitigating small-scale fading and shadowing effects. UAVs resources and flight time are very limited due to size, weight, and power (SWaP) constraints. Therefore, energy-aware communication and computation resources are allocated in order to minimize energy consumption.In this paper, a brief survey on U-MEC networks is presented. It includes the brief introduction regarding UAVs and MEC technology. The basic terminologies and architectures used in U-MEC networks are also defined. Moreover, mobile edge computation offloading working, different access schemes used during computation offloading technique are explained. Resources that are needed to be optimized in U-MEC systems are depicted with different optimization problem, and solution types. Furthermore, to guide future work in this area of research, future research directions are outlined. At the end, challenges and open issues in this domain are also summarized.
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- 2021
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36. Molecular detection of Gram-positive bacteria in the human lung through an optical fiber–based endoscope
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Tom Quinn, Annya Bruce, Alicia Megia-Fernandez, Emma Scholefield, Sheelagh Duncan, Gareth O. S. Williams, Jonathan Knight, Tim A. Birks, Michael G. Tanner, James M. Stone, Ahsan R. Akram, Nikola Krstajić, Muhammed Ucuncu, Christopher Haslett, Harry A. C. Wood, Mark Bradley, Kerrianne Harrington, Adam Marshall, Tushar R. Choudhary, Helen E. Parker, Bethany Mills, Kevin Dhaliwal, Irene Young, and Dominic Norberg
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0301 basic medicine ,Staphylococcus aureus ,Fluorescence-lifetime imaging microscopy ,Optical fiber ,Endoscope ,Gram-positive bacteria ,Gram-Positive Bacteria ,01 natural sciences ,Optical imaging ,Fluorescence ,law.invention ,010309 optics ,Gram-positive ,03 medical and health sciences ,law ,0103 physical sciences ,Endomicroscopy ,Humans ,Radiology, Nuclear Medicine and imaging ,Optical endomicroscopy ,Lung ,Optical Fibers ,Endoscopes ,Bacteria ,biology ,Chemistry ,General Medicine ,biology.organism_classification ,Imaging agent ,030104 developmental biology ,Original Article ,Molecular imaging ,Ex vivo ,Biomedical engineering - Abstract
Purpose The relentless rise in antimicrobial resistance is a major societal challenge and requires, as part of its solution, a better understanding of bacterial colonization and infection. To facilitate this, we developed a highly efficient no-wash red optical molecular imaging agent that enables the rapid, selective, and specific visualization of Gram-positive bacteria through a bespoke optical fiber–based delivery/imaging endoscopic device. Methods We rationally designed a no-wash, red, Gram-positive-specific molecular imaging agent (Merocy-Van) based on vancomycin and an environmental merocyanine dye. We demonstrated the specificity and utility of the imaging agent in escalating in vitro and ex vivo whole human lung models (n = 3), utilizing a bespoke fiber–based delivery and imaging device, coupled to a wide-field, two-color endomicroscopy system. Results The imaging agent (Merocy-Van) was specific to Gram-positive bacteria and enabled no-wash imaging of S. aureus within the alveolar space of whole ex vivo human lungs within 60 s of delivery into the field-of-view, using the novel imaging/delivery endomicroscopy device. Conclusion This platform enables the rapid and specific detection of Gram-positive bacteria in the human lung.
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- 2020
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37. Fibroblast Activation Protein specific optical imaging in Non-Small Cell Lung Cancer
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Layla Mathieson, Richard A. O’Connor, Hazel Stewart, Paige Shaw, Kevin Dhaliwal, Gareth O. S. Williams, Alicia Megia-Fernandez, and Ahsan R. Akram
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Cancer Research ,congenital, hereditary, and neonatal diseases and abnormalities ,Oncology ,neoplasms ,digestive system diseases - Abstract
Fibroblast activation protein (FAP) is a cell surface propyl-specific serine protease involved in the regulation of extracellular matrix. Whilst expressed at low levels in healthy tissue, upregulation of FAP on fibroblasts can be found in several solid organ malignancies, including non-small cell lung cancer, and chronic inflammatory conditions such as pulmonary fibrosis and rheumatoid arthritis. Their full role remains unclear, but FAP expressing cancer associated fibroblasts (CAFs) have been found to relate to a poor prognosis with worse survival rates in breast, colorectal, pancreatic, and non-small cell lung cancer (NSCLC). Optical imaging using a FAP specific chemical probe, when combined with clinically compatible imaging systems, can provide a readout of FAP activity which could allow disease monitoring, prognostication and potentially stratify therapy. However, to derive a specific signal for FAP any sequence must retain specificity over closely related endopeptidases, such as prolyl endopeptidase (PREP), and be resistant to degradation in areas of active inflammation. We describe the iterative development of a FAP optical reporter sequence which retains FAP specificity, confers resistance to degradation in the presence of activated neutrophil proteases and demonstrates clinical tractability ex vivo in NSCLC samples with an imaging platform.
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- 2022
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38. Cancer Associated Fibroblasts - An Impediment to Effective Anti-Cancer T Cell Immunity
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Lilian Koppensteiner, Layla Mathieson, Richard A. O’Connor, and Ahsan R. Akram
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Immunity, Cellular ,Cancer-Associated Fibroblasts ,Neoplasms ,Immunology ,Tumor Microenvironment ,Immunology and Allergy ,Humans ,chemical and pharmacologic phenomena - Abstract
The presence of functionally efficient cytotoxic T lymphocytes (CTL) in the Tumour nest is crucial in mediating a successful immune response to cancer. The detection and elimination of cancer cells by CTL can be impaired by cancer-mediated immune evasion. In recent years, it has become increasingly clear that not only neoplastic cells themselves, but also cells of the tumour microenvironment (TME) exert immunosuppressive functions and thereby play an integral part in the immune escape of cancer. The most abundant stromal cells of the TME, cancer associated fibroblasts (CAFs), promote tumour progression via multiple pathways and play a role in dampening the immune response to cancer. Recent research indicates that T cells react to CAF signalling and establish bidirectional crosstalk that plays a significant role in the tumour immune response. This review discusses the various mechanisms by which the CAF/T cell crosstalk may impede anti-cancer immunity.
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- 2022
39. GB0139, an inhaled small molecule inhibitor of galectin-3, in COVID-19 pneumonitis: a randomised, controlled, open-label, phase 2a experimental medicine trial of safety, pharmacokinetics, and potential therapeutic value
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Erin Gaughan, Tariq Sethi, Tom Quinn, Nikhil Hirani, Andrew Mills, Annya M. Bruce, Alison MacKinnon, Vassilios Aslanis, Feng Li, Richard O’Connor, Richard A. Parker, John Norrie, James Dear, Ahsan R. Akram, Oliver Koch, Jie Wang-Jairaj, Robert J. Slack, Lise Gravelle, Bertil Lindmark, and Kevin Dhaliwal
- Abstract
RationaleHigh galectin-3 levels predict poor outcomes in patients with COVID-19. Galectin-3 activates monocytes and macrophages which are directly implicated in COVID-19 immunopathology and the cytokine storm. GB0139 is a potent thiodigalactoside galectin-3 inhibitor and may reduce the severe effects of the disease. We report safety and pharmacokinetics and pharmacodynamics of the inhaled galectin-3 inhibitor, GB0139, and assess clinical outcomes and key systemic inflammatory biomarkers in hospitalised patients with COVID-19 (ClinicalTrials.gov/EudraCT identifier: NCT04473053/2020-002230-32).MethodsAdults with COVID-19 requiring oxygen, and with pneumonitis on x-ray, were randomised to receive standard of care (SOC; including dexamethasone; n=21) or SOC plus 10 mg GB0139 twice daily for 48 hours, then once daily for ≤14 days (n=20).ResultsPatients aged 27–87 years were enrolled from July 2020; the final patient completed the 90-day follow-up in April 2021. GB0139+SOC was well tolerated with no treatment-related serious adverse events reported. Incidences of adverse events were similar between treatment arms (40 with GB0139+SOC vs 35 with SOC). Plasma GB0139 was measurable in all patients after inhaled exposure, with moderate interpatient variability, and demonstrated target engagement with decreased circulating galectin (overall treatment effect post-hoc over days 2–7: p=0·0099 vs SOC). Rate of decline in fraction of inspired oxygen (%) requirement was significantly greater in the GB0139+SOC arm with a posterior mean difference of -1·51 (95% highest posterior density: -2·90, -0·189) versus SOC. Plasma levels of biomarkers associated with inflammation, coagulopathy, major organ function and fibrosis showed a downward trend versus SOC.ConclusionsGB0139+SOC was well tolerated and achieved clinically relevant plasma concentrations and target engagement. This, and the reduction in markers associated with inflammatory, coagulation, fibrosis, and reduction in inspired oxygen (%) over SOC alone, indicates the therapeutic potential for inhaled GB0139 in hospitalised patients with COVID-19.
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- 2021
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40. Estimating Bacterial and Cellular Load in FCFM Imaging.
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Sohan Seth, Ahsan R. Akram, Kevin Dhaliwal, and Christopher K. I. Williams
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- 2018
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41. S99 Fluorescence-lifetime imaging: a novel diagnostic tool for suspected lung cancer
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SE Fernandes, William A Wallace, K. Dhaliwal, Qiong Wang, Ahsan R. Akram, Emma Williams, N Finlayson, C Dhaliwal, Gos Williams, and David A. Dorward
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medicine.medical_specialty ,Fluorescence-lifetime imaging microscopy ,business.industry ,Medicine ,Radiology ,business ,Suspected lung cancer - Published
- 2021
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42. Tissue Proteomic Analysis Identifies Mechanisms and Stages of Immunopathology in Fatal COVID-19
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Clark D Russell, Sara Clohisey, Wael Al Qsous, Stuart D. Armstrong, Naomi N. Gachanja, Asta Valanciute, Jo Stevens, Bo Wang, Rebekah Penrice-Randal, Gabriel C Oniscu, David J. Harrison, Kevin Dhaliwal, Ahsan R. Akram, Christopher D. Lucas, Julian A. Hiscox, David A. Dorward, J Kenneth Baillie, Jillian Stephen, William A Wallace, University of St Andrews. Sir James Mackenzie Institute for Early Diagnosis, University of St Andrews. Cellular Medicine Division, and University of St Andrews. School of Medicine
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Pulmonary and Respiratory Medicine ,Macrophage colony-stimulating factor ,Male ,Proteomics ,Clinical Biochemistry ,Spleen ,Inflammation ,E-NDAS ,SDG 3 - Good Health and Well-being ,RA0421 ,Immunopathology ,RA0421 Public health. Hygiene. Preventive Medicine ,Parenchyma ,medicine ,Macrophage ,Humans ,Molecular Biology ,Lung ,health care economics and organizations ,Aged ,QR355 ,Aged, 80 and over ,business.industry ,SARS-CoV-2 ,Macrophages ,COVID-19 ,Cell Biology ,medicine.anatomical_structure ,Gene Expression Regulation ,RB Pathology ,Splenic Tissue ,Immunology ,Female ,Autopsy ,medicine.symptom ,business ,RB ,QR355 Virology - Abstract
Funding: This work was funded by UK Research and Innovation (UKRI) (Coronavirus Disease [COVID-19] Rapid Response Initiative; MR/V028790/1 to C.D.L., D.A.D., and J.A.H.), LifeArc (through the University of Edinburgh STOPCOVID funding award, to K.D, D.A.D., C.D.L), The Chief Scientist Office (RARC-19 Funding Call, ‘Inflammation in Covid-19: Exploration of Critical Aspects of Pathogenesis; COV/EDI/20/10’ to D.A.D, C.D.L, C.D.R, J.K.B and D.J.H), and Medical Research Scotland (CVG-1722- 2020 to DAD, CDL, CDR, JKB, and DJH). C.D.L is funded by a Wellcome Trust Clinical Career Development Fellowship (206566/Z/17/Z). J.K.B. and C.D.R. are supported by the Medical Research Council (grant MC_PC_19059) as part of the ISARIC Coronavirus Clinical Characterisation Consortium (ISARIC-4C). C.D.R. is supported by an Edinburgh Clinical Academic Track (ECAT)/Wellcome Trust PhD Training Fellowship for Clinicians award (214178/Z/18/Z). J.A.H. is supported by the U.S. Food and Drug Administration (contract 75F40120C00085, Characterization of severe coronavirus infection in humans and model systems for medical countermeasure development and evaluation’). G.C.O is funded by an NRS Clinician award. N.N.G. is funded by a Pathological Society Award. A.R.A. is supported by a Cancer Research UK Clinician Scientist Fellowship award (A24867). Immunopathology occurs in the lung and spleen in fatal COVID-19, involving monocytes/macrophages and plasma cells. Anti-inflammatory therapy reduces mortality but additional therapeutic targets are required. We aimed to gain mechanistic insight into COVID-19 immunopathology by targeted proteomic analysis of pulmonary and splenic tissues. Lung parenchymal and splenic tissue was obtained from 13 post-mortem examinations of patients with fatal COVID-19. Control tissue was obtained from cancer resection samples (lung) and deceased organ donors (spleen). Protein was extracted from tissue by phenol extraction. Olink® multiplex immunoassay panels were used for protein detection and quantification. Proteins with increased abundance in the lung included MCP-3, antiviral TRIM21 and pro-thrombotic TYMP. OSM and EN-RAGE/S100A12 abundance was correlated, and associated with inflammation severity. Unsupervised clustering identified ‘early viral’ and ‘late inflammatory’ clusters with distinct protein abundance profiles, and differences in illness duration prior to death and presence of viral RNA. In the spleen, lymphocyte chemotactic factors and CD8A were decreased in abundance, and pro-apoptotic factors were increased. B-cell receptor signalling pathway components and macrophage colony stimulating factor (CSF-1) were also increased. Additional evidence for a sub-set of host factors (including DDX58, OSM, TYMP, IL-18, MCP-3 and CSF-1) was provided by overlap between (i) differential abundance in spleen and lung tissue, (ii) meta-analysis of existing datasets, and (iii) plasma proteomic data. This proteomic analysis of lung parenchymal and splenic tissue from fatal COVID-19 provides mechanistic insight into tissue anti-viral responses, inflammation and disease stages, macrophage involvement, pulmonary thrombosis, splenic B-cell activation and lymphocyte depletion. Publisher PDF
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- 2021
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43. Energy Management of Microgrids for Smart Cities: A Review
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Muhammad Salman Sami, R. Akram, Muhammad Abrar, Mian Hammad Nazir, Muhammad Majid Hussain, Safdar Raza, and Muhammad Saad Khan
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Technology ,Control and Optimization ,energy management ,Computer science ,Energy management ,energy management system ,microgrids ,Energy Engineering and Power Technology ,Energy storage ,Smart city ,Electrical and Electronic Engineering ,renewable energy sources ,Engineering (miscellaneous) ,Renewable Energy, Sustainability and the Environment ,business.industry ,energy storage ,Environmental economics ,Renewable energy ,Energy management system ,smart city ,photo voltaic ,Microgrid ,Energy source ,business ,Energy (miscellaneous) ,Efficient energy use - Abstract
Electric power reliability is one of the most important factors in the social and economic evolution of a smart city, whereas the key factors to make a city smart are smart energy sources and intelligent electricity networks. The development of cost-effective microgrids with the added functionality of energy storage and backup generation plans has resulted from the combined impact of high energy demands from consumers and environmental concerns, which push for minimizing the energy imbalance, reducing energy losses and CO2 emissions, and improving the overall security and reliability of a power system. It is now possible to tackle the problem of growing consumer load by utilizing the recent developments in modern types of renewable energy resources (RES) and current technology. These energy alternatives do not emit greenhouse gases (GHG) like fossil fuels do, and so help to mitigate climate change. They also have in socioeconomic advantages due to long-term sustainability. Variability and intermittency are the main drawbacks of renewable energy resources (RES), which affect the consistency of electric supply. Thus, utilizing multiple optimization approaches, the energy management system determines the optimum solution for renewable energy resources (RES) and transfers it to the microgrid. Microgrids maintain the continuity of power delivery, according to the energy management system settings. In a microgrid, an energy management system (EMS) is used to decrease the system’s expenses and adverse consequences. As a result, a variety of strategies and approaches are employed in the development of an efficient energy management system. This article is intended to provide a comprehensive overview of a range of technologies and techniques, and their solutions, for managing the drawbacks of renewable energy supplies, such as variability and load fluctuations, while still matching energy demands for their integration in the microgrids of smart cities.
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- 2021
44. A matrix metalloproteinase activation probe for painting human tumours
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Kevin Dhaliwal, Alicia Megia-Fernandez, Ahsan R. Akram, Mark Bradley, Bethany Mills, and Dominic Norberg
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Surgical resection ,0303 health sciences ,Chemistry ,Metals and Alloys ,General Chemistry ,Carbocyanines ,Matrix metalloproteinase ,Fluoresceins ,Matrix Metalloproteinases ,Catalysis ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,03 medical and health sciences ,0302 clinical medicine ,Förster resonance energy transfer ,Microscopy, Fluorescence ,Neoplasms ,030220 oncology & carcinogenesis ,Materials Chemistry ,Ceramics and Composites ,Cancer research ,Humans ,Peptides ,Fluorescent Dyes ,030304 developmental biology - Abstract
A probe that allows specific 'painting' of human tumours is described. Probe activation was mediated by specific matrix metalloproteinases, resulting not only in disruption of a FRET pair, but in the generation of a fragment that "fluorescently paints" human tumours. This probe demonstrated rapid and effective human tumour labelling with the potential to allow margin detection during surgical resection.
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- 2020
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45. Exploration of a New Source of Sustainable Nanomaterial from the Koh-e-Suleiman Mountain Range of Pakistan for Industrial Applications
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J. S. Nirwan, S. Farhaj, M. M. Chaudhary, Z. Khizer, S. S. Hasan, A. Angelis-Dimakis, A. Gill, H. Rasheed, N. Abbas, M. S. Arshad, T. Hussain, Y. Shahzad, A. M. Yousaf, T. A. Chohan, H. A. Merchant, M. R. Akram, T. M. Khan, M. Ashraf, B. R. Conway, and M. U. Ghori
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Resource (biology) ,lcsh:Medicine ,020101 civil engineering ,02 engineering and technology ,Article ,0201 civil engineering ,Suleiman ,chemistry.chemical_compound ,lcsh:Science ,geography ,Multidisciplinary ,geography.geographical_feature_category ,Waste management ,Scale (chemistry) ,Extraction (chemistry) ,lcsh:R ,021001 nanoscience & nanotechnology ,Economic benefits ,Environmental sciences ,Montmorillonite ,chemistry ,Environmental chemistry ,Environmental science ,lcsh:Q ,Pottery ,0210 nano-technology ,Mountain range - Abstract
The present study aimed to explore a new source of montmorillonite and to develop an extraction and purification protocol for its isolation from raw clay samples acquired from the Koh-e-Suleiman mountain range in Pakistan. The process involved the collection of raw clay from the source, identification and quantification of montmorillonite. Granulometric extraction and purification protocols increased the montmorillonite content from 21.8–25.1% in the raw clay to 90.1–93.9% after small-scale extraction and 85.33–89.33% on a larger scale. A techno-economic analysis highlighted the practicality and economic benefits of large-scale extraction for industrial applications. This study highlights the existence of a substantial new source of this valuable clay which is currently used across multiple industries including construction, pottery making, pharmaceuticals, cosmetics and engineering. It is intuitively expected that the large-scale extraction of the material will improve the economic condition of the region by providing employment opportunities to locals and may be a valuable resource for export.
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- 2020
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46. Distributed Energy Management Analysis for Microgrids
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Muhammad Majid Hussain, Abdul Razaq, Tasmiyah Javed, Muhammad Siddique, R. Akram, and Waqas Javed
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Demand management ,Energy management system ,Wind power ,Smart grid ,business.industry ,Computer science ,Distributed generation ,Management system ,Energy consumption ,Environmental economics ,business ,Renewable energy - Abstract
A key method of reducing energy usage and bills is collaborative demand management of buildings, and smart distribution networks using local renewable energy integrated sources. Emerging technologies such as the IOT (internet of things) can be integrated with grids, allowing bidirectional communication between customers and suppliers, while supporting remote management and monitoring of live energy usage. These systems create opportunities to deal with the distributed aggregation and control of distributed energy resources (DERs). Investigating how DERs are used at residential level in buildings such as smart houses reveal new possibilities relating to how the demand side can be made more efficient. In the long term, reducing energy demand during onpeak hours is a step towards creating a clean energy future. The primary goal of this paper is to observe and investigate how specific DSM strategies minimize energy consumption while maximizing efficiency with the use of new emerging technologies. A software called ETAP is used to analyse the integration of distributed generation such as renewable energy sources (RES) to utilize local power storage. In short, this is useful in providing flexibility to consumers. A PV system was also tested with an individual domestic load using an energy management system. This test examined how appliance energy usage can be reduced and shows why a management system is required to optimally utilize a PV system.
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- 2021
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47. T cells drive negative feedback mechanisms in cancer associated fibroblasts, promoting expression of co-inhibitory ligands, CD73 and IL-27 in non-small cell lung cancer
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Sandrine Prost, Ahsan R. Akram, Helen F Titmarsh, David A. Dorward, Layla Mathieson, Guilia Tagliavini, Kevin Dhaliwal, Richard A. O’Connor, Irene Young, Lilian Koppensteiner, Vishwani Chauhan, and William A Wallace
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Interleukin-27 ,Stromal cell ,Lung Neoplasms ,T cell ,T-Lymphocytes ,Immunology ,T cells ,Major histocompatibility complex ,GPI-Linked Proteins ,Ligands ,crosstalk ,Feedback ,Non-small cell lung cancer ,Cancer-Associated Fibroblasts ,Carcinoma, Non-Small-Cell Lung ,medicine ,Tumor Microenvironment ,Immunology and Allergy ,Cytotoxic T cell ,Humans ,Receptor ,5'-Nucleotidase ,RC254-282 ,Original Research ,biology ,Chemistry ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC581-607 ,Immune checkpoint ,medicine.anatomical_structure ,Oncology ,Cancer cell ,Cancer research ,biology.protein ,Immunologic diseases. Allergy ,Research Article - Abstract
The success of immune checkpoint therapy shows tumour-reactive T cells can eliminate cancer cells but are restrained by immunosuppression within the tumour micro-environment (TME). Cancer Associated Fibroblasts (CAFs) are the dominant stromal cell in the TME and co-localise with T cells in non-small cell lung cancer. We demonstrate the bi-directional nature of CAF / T cell interactions; T cells promote expression of co-inhibitory ligands, MHC molecules and CD73 on CAFs, increasing their production of IL-6 and eliciting production of IL-27. In turn CAFs upregulate co-inhibitory receptors on T cells including the ectonucleotidase CD39 promoting development of an exhausted but highly cytotoxic phenotype. Our results highlight the bi-directional interaction between T cells and CAFs in promoting components of the immunosuppressive CD39, CD73 adenosine pathway and demonstrate IL-27 production can be induced in CAF by activated T cells.
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- 2021
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48. Systematic review of studies investigating ventilator associated pneumonia diagnostics in intensive care
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Kevin Dhaliwal, Milo Cullinan, B. Clare Lendrem, Thomas H. Craven, Sara Graziadio, Timothy S. Walsh, Joanne Gray, Ahsan R. Akram, Peter McMeekin, Basem Al-Omari, Amanda Winter, A Joy Allen, William Stephen Jones, and Jana Suklan
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Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,MEDLINE ,B100 ,Cochrane Library ,B800 ,Diseases of the respiratory system ,03 medical and health sciences ,0302 clinical medicine ,Intensive care ,Humans ,Ventilator-associated pneumonia ,Medicine ,Intensive care medicine ,Diagnostics ,RC705-779 ,business.industry ,Intensive treatment ,Pneumonia, Ventilator-Associated ,030208 emergency & critical care medicine ,A300 ,medicine.disease ,Respiration, Artificial ,Checklist ,Test (assessment) ,B900 ,Critical care ,Critical appraisal ,030228 respiratory system ,business ,Research Article - Abstract
BackgroundVentilator-associated pneumonia (VAP) is an important diagnosis in critical care. VAP research is complicated by the lack of agreed diagnostic criteria and reference standard test criteria. Our aim was to review which reference standard tests are used to evaluate novel index tests for suspected VAP.MethodsWe conducted a comprehensive search using electronic databases and hand reference checks. The Cochrane Library, MEDLINE, CINHAL, EMBASE, and web of science were searched from 2008 until November 2018. All terms related to VAP diagnostics in the intensive treatment unit were used to conduct the search. We adopted a checklist from the critical appraisal skills programme checklist for diagnostic studies to assess the quality of the included studies.ResultsWe identified 2441 records, of which 178 were selected for full-text review. Following methodological examination and quality assessment, 44 studies were included in narrative data synthesis. Thirty-two (72.7%) studies utilised a sole microbiological reference standard; the remaining 12 studies utilised a composite reference standard, nine of which included a mandatory microbiological criterion. Histopathological criteria were optional in four studies but mandatory in none.ConclusionsNearly all reference standards for VAP used in diagnostic test research required some microbiological confirmation of infection, with BAL culture being the most common reference standard used.
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- 2021
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49. DEFINE: A Phase IIa Randomised Controlled Trial to Evaluate Repurposed Treatments for COVID-19
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Ahsan R. Akram, Vikki Young, Oliver Koch, Erin Gaughan, Nikhil Hirani, James W. Dear, Jean Antonelli, Kevin Dhaliwal, Annya Bruce, Tom Quinn, Claire Mackintosh, John Norrie, and Joanne Mair
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medicine.medical_specialty ,education.field_of_study ,business.industry ,Population ,law.invention ,Clinical trial ,Route of administration ,Patient safety ,Randomized controlled trial ,law ,Pharmacodynamics ,Internal medicine ,medicine ,Clinical endpoint ,education ,business ,Viral load - Abstract
IntroductionCOVID-19 (Coronavirus Disease 2019) is a new viral-induced pneumonia caused by infection with a novel coronavirus, SARS CoV2 (Severe Acute Respiratory Syndrome Coronavirus 2). At present there are few proven effective treatments. This early phase experimental medicine protocol describes an overarching and adaptive trial designed to provide safety, pharmacokinetic (PK)/ pharmacodynamic (PD) information and exploratory biological surrogates of efficacy, which may support further development and deployment of candidate therapies in larger scale trials of COVID-19 positive patients.Methods and analysisDEFINE is an ongoing exploratory multicentre platform, open label, randomised study. COVID-19 positive patients will be recruited from the following cohorts; a) community cases b) hospitalised patients with new changes on a chest x-ray (CXR) or a computed tomography (CT) scan or requiring supplemental oxygen and c) hospitalised patients requiring assisted ventilation. Participants may be recruited from all three of these cohorts, depending on the experimental therapy, its route of administration and mechanism of action.The primary statistical analyses are concerned with the safety of candidate agents as add-on therapy to standard of care in patients with COVID-19.Safety will be assessed usingHaematological and biochemical safety laboratory investigations.Physical examinationVital signs (blood pressure/heart rate/temperature and respiratory rate)Daily electrocardiogram (ECG) readingsAdverse eventsThe analysis population will consist of (i) all patients randomised to a treatment arm who receive any dose of the study drug and (ii) all patients randomised to the control arm who would also have been eligible to receive a study drug.Secondary analysis will assess the following variables during treatment period 1) the response of key exploratory biomarkers 2) change in WHO ordinal scale and NEWS2 score 3) oxygen requirements 4) viral load 5) duration of hospital stay 6) PK/PD and 7) changes in key coagulation pathways.Ethics and disseminationThe DEFINE trial platform and its initial two treatment and standard of care arms have received full ethical approval from Scotland A REC (20/SS/0066), the MHRA (EudraCT 2020-002230-32) and NHS Lothian and NHS Greater Glasgow and Clyde.The results of each study arm will be published as soon as the treatment arm has finished recruitment, data input is complete and any outstanding patient safety follow-ups have been completed. Depending on the results of these or future arms, data will be shared with larger clinical trial networks, including RECOVERY, and to other partners for rapid roll out in larger patient cohorts.Registration detailsThe DEFINE protocol has been registered on ISRCTN (https://www.isrctn.com/) and Clinicaltrials.gov(https://www.clinicaltrials.gov/).ClinicalTrials.gov Identifier: NCT04473053ISRCTN Identifier: ISRCTN14212905Strengths and limitations of this studyThe trial is as flexible as possible to ensure a broad range of patients can be recruited and candidate therapies can be added or removed as evidence emerges.The team are collecting real world data of medications at an early stage of their use in COVID-19 across the full spectrum of disease; allowing the administration of different treatment formulations (inhaled vs oral vs intravenous).The simultaneous collection of clinical outcomes as well as exploratory endpoints including clinical biomarkers, flow cytometry, PK/PD and thromboelastography allows further characterisation and elucidation of the temporal immuno-inflammatory cascade in COVID-19 to inform on future therapy selection.This is a Phase 1b/IIa platform study and thus the primary end point is clinical safety therefore our anticipated numbers will be too small to allow for definitive data on efficacy.DEFINE is an experimental medicine platform, currently restricted to three clinical sites and so the generation of data will be slower than that of larger platforms with access to a greater number of patients.
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- 2021
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50. Randomised Controlled Trial of Intravenous Nafamostat Mesylate in COVID Pneumonitis: Phase 1b/2a Experimental Study to Investigate Safety, Pharmacokinetics and Pharmacodynamics
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Oliver Koch, Andrew Duncan, Jean Antonelli, Timothy S. Walsh, Annya Bruce, Kay Russell, Colin Ferrett, Colin Church, James S. O. McCullagh, Jürgen Schwarze, Cecilia Boz, Giulia Rinaldi, Sinéad Plant, Gareth Hardisty, Anne Moore, Ahsan R. Akram, Kourosh Honarmand Ebrahimi, Sarah McNamara, Feng Li, Kevin G. Blyth, K. Dhaliwal, David H. Dockrell, Asta Valanciute, Ross Mills, Bethany Mills, Claire L. Mackintosh, Daniel C. Anthony, Tom Quinn, Steve P. Rannard, John Norrie, Irene Young, Keith Finlayson, Kate Templeton, Alastair F. Nimmo, Richard A. O’Connor, Erin Gaughan, Emma Scholefield, James W. Dear, Richard Parker, Andrew Owen, Philip Emanuel, Manu Shankar-Hari, Grant C. Churchill, Adam Marshall, Nik Hirani, Islom B. Nazarov, Matthew Burgess, Emily Gwyer Findlay, and Sunny Jabball
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Male ,Medicine (General) ,History ,Polymers and Plastics ,Kaplan-Meier Estimate ,Guanidines ,Industrial and Manufacturing Engineering ,law.invention ,Randomized controlled trial ,Informed consent ,law ,SARS-CoV-2/COVID-19 ,Nafamostat mesylate ,Medicine ,Aged, 80 and over ,education.field_of_study ,Anti-Inflammatory Agents, Non-Steroidal ,General Medicine ,Middle Aged ,Viral Load ,Nafamostat ,Thromboelastometry ,Total manuscript word count ,Treatment Outcome ,Anesthesia ,Infectious diseases ,Administration, Intravenous ,Female ,Half-Life ,Adult ,medicine.medical_specialty ,Population ,Drug Administration Schedule ,General Biochemistry, Genetics and Molecular Biology ,Immunophenotyping ,Respiratory medicine ,R5-920 ,Pharmacokinetics ,Internal medicine ,Humans ,Business and International Management ,education ,Aged ,Pneumonitis ,SARS-CoV-2 ,business.industry ,COVID-19 ,medicine.disease ,Benzamidines ,COVID-19 Drug Treatment ,Clinical trial ,Pharmacodynamics ,business ,Biomarkers - Abstract
Despite the success of vaccines and selected repurposed treatments, COVID-19 is likely to remain a global health problem and further chemotherapeutics are required. Many repurposed drugs have progressed rapidly to Phase 2 and 3 trials without characterisation of Pharmacokinetics (PK)/Pharmacodynamics (PD) including safety in COVID-19. One such drug is Nafamostat Mesylate (Nafamostat), a synthetic serine protease inhibitor with anticoagulant and anti-inflammatory properties. Preclinical data has demonstrated that it is has potent antiviral activity against SARS-CoV-2 by directly inhibiting the transmembrane protease serine 2 (TMPRSS2) dependent stage of host cell entry.MethodsWe present the findings of a phase Ib/II open label, platform randomised controlled trial (RCT), exploring the safety of intravenous Nafamostat in hospitalised patients with confirmed COVID-19 pneumonitis. Patients were assigned randomly to standard of care (SoC), Nafamostat or an alternative therapy. Secondary endpoints included clinical endpoints such as number of oxygen free days and clinical improvement/ deterioration, PK/PD, thromboelastometry, D Dimers, cytokines, immune cell flow cytometry and viral load.ResultsData is reported from 42 patients, 21 of which were randomly assigned to receive intravenous Nafamostat. The Nafamostat group developed significantly higher plasma creatinine levels, more adverse events and a lower number of oxygen free days. There were no other statistically significant differences in the primary or secondary endpoints between Nafamostat and SoC. PK data demonstrated that intravenous Nafamostat was rapidly broken down to inactive metabolites. We observed an antifibrinolytic profile, and no significant anticoagulant effects in thromboelastometry. Participants in the Nafamostat group had higher D Dimers compared to SoC. There were no differences in cytokine profile and immune cell phenotype and viral loads between the groups.ConclusionIn hospitalised patients with COVID-19, we did not observe evidence of anti-inflammatory, anticoagulant or antiviral activity with intravenous Nafamostat. Given the number of negative trials with repurposed drugs, our experimental medicine trial highlights the value of PK/PD studies prior to selecting drugs for efficacy trials. Given the mechanism of action, further evaluation of Nafamostat delivered via a different route may be warranted. This trial demonstrates the importance of experimental trials in new disease entities such as COVID-19 prior to selecting drugs for larger trials.
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- 2021
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