3,053 results on '"Proteine"'
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2. Grundlagen genetischer und evolutionärer Algorithmen
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Mainzer, Klaus and Mainzer, Klaus, editor
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- 2024
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3. Kollagen
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Olatunji, Ololade and Olatunji, Ololade
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- 2024
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4. Proteine aus aquatischen Pflanzen und Algen
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Olatunji, Ololade and Olatunji, Ololade
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- 2024
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5. Enzyme
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Olatunji, Ololade and Olatunji, Ololade
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- 2024
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6. Ce să mănânci pentru o sănătate bună a coloanei vertebrale?
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Tarcea, Monica, Cojocariu, Cristian, Sânpălean, Monica, and Matran, Irina
- Abstract
Copyright of Romanian Journal of Nutrition is the property of MEDICHUB MEDIA, S.R.L. and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2024
7. Nutrition protéique du porc et changement climatique : état des lieux et perspectives
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Léa CAPPELAERE, William LAMBERT, Josselin LE COUR GRANDMAISON, Aude SIMONGIOVANNI, and Marie-Pierre LÉTOURNEAU-MONTMINY
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élevage porcin ,protéine ,acides aminés ,azote ,environnment ,changement cimatique ,Animal culture ,SF1-1100 ,Aquaculture. Fisheries. Angling ,SH1-691 - Abstract
La production porcine est responsable d’environ 10 % des émissions de gaz à effet de serre (GES) de l’élevage mondial et doit réduire ses impacts. Ces émissions de GES, comptabilisées en sortie de ferme, sont liées à la production d’aliment et la gestion des effluents, pour 60 % et 30 % respectivement. La réduction du taux de protéines alimentaires peut agir sur ces deux sources. Cette revue synthétise les connaissances actuelles sur les bénéfices de cette stratégie pour réduire l’impact changement climatique (CC) en relation avec les matières premières utilisées et la réduction des émissions azotées. Une analyse de cycle de vie (ACV) à l’échelle de l’aliment montre que le CC est réduit de 8 % par point de réduction du taux protéique, grâce au remplacement des matières premières plus impactantes (produits du soja). Ces bénéfices sont dépendants des matières premières disponibles et utilisées, du choix des bases de données d’évaluation environnementale et du contexte technico-économique. La modélisation des émissions azotées en fonction des performances, mise à jour par méta-analyse, permet d’effectuer une ACV en sortie de ferme. Une réduction du CC par kg de porc de 10 % pour un point de baisse du taux protéique est atteignable. Cependant, des lacunes méthodologiques et de connaissances subsistent pour correctement évaluer cette stratégie : facteurs d’émission du N2O, prise en compte de l’utilisation des effluents pour la fertilisation, effet sur les performances zootechniques. Par ailleurs, des évolutions structurelles sont nécessaires pour faciliter la mise en pratique, comme la rémunération des externalités positives.
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- 2024
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8. Protein‐basierte Nanopartikel: Von Wirkstofftransport zu Bildgebung, Nanokatalyse und Proteintherapie.
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Kaltbeitzel, Jonas and Wich, Peter R.
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ENZYMES - Abstract
Proteine und Enzyme sind äußerst vielseitige Biomaterialien, die aufgrund ihrer hohen Spezifität für Rezeptoren und Substrate, ihrer Abbaubarkeit, geringen Toxizität und insgesamt guten Biokompatibilität hervorragend für ein breites Spektrum medizinischer Anwendungen geeignet sind. Durch die Anordnung mehrerer nativer oder modifizierter Proteine zu nanometergroßen Protein‐Nanopartikeln können zusätzliche vorteilhafte Eigenschaften wie eine erhöhte Stabilität im Blutstrom erreicht werden. In diesem Aufsatz konzentrieren wir uns auf künstliche Nanopartikelsysteme, bei denen Proteine das Hauptstrukturelement sind und nicht nur als eingeschlossene Wirkstoffe transportiert werden. Während unter natürlichen Bedingungen lediglich bestimmte Proteine definierte Aggregate und Nanopartikel bilden, können durch chemische Modifikationen oder Veränderungen in der physikalischen Umgebung Nanopartikel aus vielen verschiedenen globulären Proteinen und Enzymen hergestellt werden. Fortschritte bei den Herstellungsmethoden von proteinbasierten Nanopartikeln haben zu einer neuen Generation von Nanosystemen geführt, die über einfache Wirkstofftransporter hinausgehen und vielfältige Anwendungen ermöglichen, wie z.B. gezielte Arzneimittelabgabe, Theranostik, Nanokatalyse und Proteintherapie. [ABSTRACT FROM AUTHOR]
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- 2023
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9. Insectele – surse de nutrienţi și substanţe biologic active.
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Guțu, Ina and Bacinschi, Nicolae
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GREENHOUSE gases , *UNSATURATED fatty acids , *ESSENTIAL amino acids , *EDIBLE insects , *MEAT alternatives - Abstract
Entomology and entomophagy have become a new trend in biomedical research and food science. From a nutritional point of view, insects are an excellent source of protein, with a high content of essential amino acids, while being rich in unsaturated fatty acids, micronutrients and fiber. In addition, edible insects contain various bioactive compounds with potential beneficial health effects. In this context, the European Commission has approved some species of insects in whole form or certain parts as “novel foods” following a rigorous scientific evaluation carried out by the European Food Safety Authority. Insects are a highly sustainable substitute for meat and animal products and, from an ecological point of view, they can make an important contribution to the sustainability of the environment, requiring fewer resources to develop their life cycle and offering an undoubted advantage over the livestock sector in terms of emissions of greenhouse gases and ammonia. [ABSTRACT FROM AUTHOR]
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- 2023
10. Snail meat, a newly discovered old source of protein in the human diet.
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Polak, M. Lušnic, Polak, T., Brglez, N., and Demšar, L.
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DIETARY proteins ,VEGETABLE oils ,TRANS fatty acids ,UNSATURATED fatty acids ,SNAILS ,OLEIC acid ,VEGETARIANS - Abstract
Copyright of MESO is the property of Zadruzna Stampa D.D. and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2023
11. Oil body extraction from oleo-proteaginous seeds and conservation of valuable native compounds.
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Fabre, Jean-François, Lacroux, Eric, Cerny, Muriel, Vaca-Medina, Guadalupe, Cassen, Audrey, Merah, Othmane, Valentin, Romain, and Mouloungui, Zéphirin
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PHYTOSTEROLS , *SEED dispersal , *PETROLEUM , *PHOSPHATIDIC acids , *CELL membranes , *SPRAY drying - Abstract
Oil bodies, also called oleosomes have been the object of an increased interest since the last decade. Different processes of extraction and purification involve an aqueous crushing with methods to soften the cell membranes. An integrated process was used on different oilseeds to compare the different oil-body dispersions obtained. Once extracted with an aqueous crushing, oil bodies are dispersed in a creamy phase containing also an important protein content. Their stability depends on membranous proteins but also surrounding, extraneous ones. To eliminate these non-membranous proteins, the emulsion can be washed with different compounds allowing a good protein solubilization. If the fatty acid, phytosterol, tocopherol contents and distribution are compared between seeds and dispersions of oil bodies, there appears to be little significant change. These valuable compounds are hence preserved in the oil bodies. However, aqueous crushing releases phospholipase partly explaining the lower phospholipid content and the higher relative concentration of phosphatidic acid. To preserve these emulsions, it is possible to dry them either through freeze-drying or spray-drying. Spray-drying allows a better recovery of the physical structure of the emulsion after rehydration but cryo-protectants as Tris or Glycerol can limit emulsion degradation provoked by hard mechanical constraints of a freeze-drying process. [ABSTRACT FROM AUTHOR]
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- 2023
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12. ABLATION METHOD OF GRINDING A LEATHER SPLIT UNDER THE INFLUENCE OF LASER RADIATION.
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JUMAYEVA, Gulnoza, MARKEVICH, Mariya, TOSHEV, Akmal, KODIROV, Tulkin, and SHOYIMOV, Shokhrukh
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ABLATION techniques , *LASER beams , *SCANNING electron microscopy , *SURFACE morphology , *ABSORPTION - Abstract
Using scanning electron microscopy, the surface morphology of a split leather sample was studied under the action of laser radiation from the front and backsides. It has been established that the effect of laser skin resurfacing is achieved in the range of input energies of 40 J and exposure times of 40 sec. It was found that laser exposure from the front and backsides leads to polishing of splits. Skin resurfacing from the front and leather split starts at different input energies from the front side from the split, which is associated with a looser structure of the leather from the split and its lower absorption of radiation. [ABSTRACT FROM AUTHOR]
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- 2022
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13. ERBSLÖH Juice and Fruit Wine Seminar 2024.
- Abstract
Copyright of FLÜSSIGES OBST is the property of Confructa-Medien GmbH and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2024
14. Amaranth irrigation frequency in northeast Patagonia, Argentina.
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Zubillaga, Maria Fany, Martínez, Roberto Simón, Camina, Ricardo, Orioli, Gustavo Adolfo, Failla, Mauricio, Alder, Maite, and Barrio, Daniel Alejandro
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IRRIGATION ,WATER efficiency ,IRRIGATION management ,IRRIGATION water ,WATER management ,PLANT phenology ,AMARANTHS - Abstract
Copyright of Biotechnologie, Agronomie, Societe et Environnement is the property of Les Presses Agronomiques de Gembloux and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2021
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15. Interpretazione dei dati di analisi degli alimenti e adeguamento delle razioni.
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Bani, Paolo, Cattaneo, Luca, and Ferronato, Giulia
- Abstract
Copyright of Summa, Animali da Reddito is the property of Point Veterinaire Italie s.r.l. and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2021
16. Evidenzbasierte Ernährung bei zerebrovaskulären und kardiovaskulären Erkrankungen: Teil 2 Zerebrovaskuläre Erkrankungen.
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Deupmann, A.-K., Debus, E. S., and Grundmann, R. T.
- Abstract
Copyright of Gefaesschirurgie is the property of Springer Nature and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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- 2021
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17. Evaluarea efectului statinelor asupra procesului de calusare prin metoda spectroscopiei în infraroșu cu transformare Fourier (FT-IR).
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Ciornei, MădălinaDumitrița, Orban, Emese, Șipoș, Remus Sebastian, and Fechete, Radu
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FOURIER transform infrared spectroscopy , *RATS , *HUMAN biology , *PROTEIN structure , *MEMBRANE proteins , *DYSLIPIDEMIA - Abstract
Introduction. Bone is a dynamic tissue that is constantly formed and resorbed. The occurrence of a fracture initiates a cascade of inflammatory, repair and remodeling processes. Bone repair is performed by indirect ossification and direct ossification, indirect ossification being the most common. The similarities in bone tissue biology between human and rat bone led us to choose the rats as experimental models for the study of statin-induced changes. Statins play a very important role in the clinical management of osteoporosis and callusing process, cartilage calcification proving to be an excellent model to exa - mine the role of lipids in mineralization. The lipids maintain cell viability, interact with membrane proteins and help regulate transcellular ionic flux. The current study aimed to investigate at the molecular level the effects of simvastatin treatment on the callusing process in rats, using Fourier transform infrared spectroscopy (FT-IR). Materials and method. The study was performed on a lot of 12 rats, divided into two groups: untreated neovarectomized rats, the control group (12 rats), and simovastatin-treated neovarectomized rats (12 rats). Considering that the completion of the callus process is possible in week 8 post-fracture, we followed the evolution of the ratio of saturated and unsaturated lipids correlated with the ratio of protein structures and the types of minerals in the two groups studied. Results. The lipid-lowering treatment, compared to the control group, increased the amount of unsaturated lipids in the organic matrix of bone tissue and increased the amount of structures with asymmetric vibration of carbon hydrogen bonds in the CH2 group of lipid. In the case of protein structures, there was a doubling of the amount of Amide I and an increase of almost six times of Amide II. In mineral structure, there was an increase in the amount of phosphates accompanied by a decrease in the amount of carbonates. Conclusions. The lipid-lowering treatment not only influences the lipid component of the organic matrix of the bone tissue, but also influences its protein component, and these changes of the organic matrix will also influence the degree of mineralization of the organic matrix. Regarding the ratio between carbonates and phosphates, its changings can influence the hardness/the brittleness of the bone. [ABSTRACT FROM AUTHOR]
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- 2021
18. AAC Redstar hard red spring wheat.
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Burt, A.J., Humphreys, D.G., Mitchell Fetch, J., Green, D., Fetch, T.G., McCallum, B.D., Menzies, J., Aboukhaddour, R., Henriquez, M.A., and Kumar, S.
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STRIPE rust ,WHEAT ,GRAIN yields ,PRAIRIES ,FUSARIUM ,CULTIVARS ,CANOLA - Abstract
Copyright of Canadian Journal of Plant Science is the property of Canadian Science Publishing and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2021
- Full Text
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19. NMR‐Studien an biologischen Makromolekülen (>100 kDa) ohne Notwendigkeit der Deuterierung: Das XL‐ALSOFAST Experiment mit verzögerter Entkopplung.
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Rößler, Philip, Mathieu, Daniel, and Gossert, Alvar D.
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EXPERIMENTS , *PROTEINS - Abstract
Die aktuelle strukturbiologische Forschung fokussiert sich zunehmend auf humane Proteine und deren Komplexe. Diese Proteine müssen häufig in höheren eukaryotischen Expressionssystemen produziert werden, in welchen die Deuterierung des Proteins nur schwer umzusetzen ist. Dies limitiert die Anwendungsmöglichkeiten der NMR‐Spektroskopie stark für diese Systeme. In diesem Artikel präsentieren wir das XL‐ALSOFAST‐13C,1H]‐HMQC‐Experiment, welches sich durch eine stark verbesserte Sensitivität auf vollständig protonierten, hochmolekularen Komplexen auszeichnet. Im Durchschnitt konnte bei den getesteten Systemen mit Massen zwischen 100 und 240 kDa eine Verbesserung der Sensitivität um den Faktor drei erzielt werden, verglichen mit den aktuell besten publizierten Experimenten. Das Prinzip des XL‐ALSOFAST beruht auf der optimalen Nutzung von passiver Magnetisierung und der Minimierung von transversaler Relaxation durch das in diesem Artikel eingeführte Konzept der verzögerten Entkopplung. Die Kombination aus hoher Sensitivität und überlegener Artefaktunterdrückung macht XL‐ALSOFAST ideal für Untersuchungen an instabilen Membranproteinen oder zur Analyse von therapeutischen Antikörpern bei natürlicher 13C‐Häufigkeit. XL‐ALSOFAST und das Konzept der verzögerten Entkopplung wird daher mehr biologisch relevante Systeme für die NMR‐Spektroskopie zugänglich machen. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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20. A Molecular Chameleon for Mapping Subcellular Polarity in an Unfolded Proteome Environment.
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Owyong, Tze Cin, Subedi, Pramod, Deng, Jieru, Hinde, Elizabeth, Paxman, Jason J., White, Jonathan M., Chen, Weisan, Heras, Begoña, Wong, Wallace W. H., and Hong, Yuning
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GENE mapping , *DENATURATION of proteins , *VIRUS diseases , *PERMITTIVITY , *QUALITY control - Abstract
Environmental polarity is an important factor that drives biomolecular interactions to regulate cell function. Herein, a general method of using the fluorogenic probe NTPAN‐MI is reported to quantify the subcellular polarity change in response to protein unfolding. NTPAN‐MI fluorescence is selectively activated upon labeling unfolded proteins with exposed thiols, thereby reporting on the extent of proteostasis. NTPAN‐MI also reveals the collapse of the host proteome caused by influenza A virus infection. The emission profile of NTPAN‐MI contains information of the local polarity of the unfolded proteome, which can be resolved through spectral phasor analysis. Under stress conditions that disrupt different checkpoints of protein quality control, distinct patterns of dielectric constant distribution in the cytoplasm can be observed. However, in the nucleus, the unfolded proteome was found to experience a more hydrophilic environment across all the stress conditions, indicating the central role of nucleus in the stress response process. [ABSTRACT FROM AUTHOR]
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- 2020
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21. NUTRITIONAL VALUE OF SAFFLOWER WHOLE SEED AS ANIMAL FEED IN SEMI-ARID SOUTHERN AFRICAN CONDITIONS.
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KEREILWE, D., EMONGOR, V. E., OAGILE, O., and PHOLE, O.
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ANIMAL feeds , *NUTRITIONAL value , *SAFFLOWER , *MONOUNSATURATED fatty acids , *UNSATURATED fatty acids , *HORTICULTURAL crops - Abstract
Safflower (Carthamus tinctorius L.) is a multipurpose crop, grown for its high quality edible oil (poly unsaturated and monounsaturated fatty acids), and as a horticultural crop (vegetable and cut flower). It is also grown for flavouring and colouring foods, as herbal tea, livestock feed, pharmaceuticals, dyes, paints and biodiesel.The objective of this study wasto evaluate the influence of safflower genotype on the nutritional quality of whole seed used as livestock feed. Nine safflower genotypes (eight exotic and one local) were grown in winter and summer. The seeds were harvested at physiological maturity and analysed for different nutritional variables. Whole safflower seeds dry matter (DM), crude protein (CP), neutral detergent fibre (NDF), acid detergent fibre (ADF), acid detergent lignin (ADL) and ash varied significantly, depending on genotype and growing season. The seed mineral content (P, K, Mg and Na) also varied across genotypes. Safflower whole seeds have great potential to serve as an excellent livestock feed in semi-arid conditions. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
22. On the Binding of Congo Red to Amyloid Fibrils.
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Espargaró, Alba, Llabrés, Salomé, Saupe, Sven J., Curutchet, Carles, Luque, F. Javier, and Sabaté, Raimon
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AMYLOID , *MOLECULAR dynamics , *NUCLEAR magnetic resonance spectroscopy , *RED , *MOLECULAR docking - Abstract
Amyloids are characterized by their capacity to bind Congo red (CR), one of the most used amyloid‐specific dyes. The structural features of CR binding were unknown for years, mainly because of the lack of amyloid structures solved at high resolution. In the last few years, solid‐state NMR spectroscopy enabled the determination of the structural features of amyloids, such as the HET‐s prion forming domain (HET‐s PFD), which also has recently been used to determine the amyloid–CR interface at atomic resolution. Herein, we combine spectroscopic data with molecular docking, molecular dynamics, and excitonic quantum/molecular mechanics calculations to examine and rationalize CR binding to amyloids. In contrast to a previous assumption on the binding mode, our results suggest that CR binding to the HET‐s PFD involves a cooperative process entailing the formation of a complex with 1:1 stoichiometry. This provides a molecular basis to explain the bathochromic shift in the maximal absorbance wavelength when CR is bound to amyloids. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
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23. Stable Pyrrole‐Linked Bioconjugates through Tetrazine‐Triggered Azanorbornadiene Fragmentation.
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Gil de Montes, Enrique, Istrate, Alena, Navo, Claudio D., Jiménez‐Moreno, Ester, Hoyt, Emily A., Corzana, Francisco, Robina, Inmaculada, Jiménez‐Osés, Gonzalo, Moreno‐Vargas, Antonio J., and Bernardes, Gonçalo J. L.
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BIOCONJUGATES , *SCISSION (Chemistry) , *CHEMICAL biology , *TETRAZINE , *CYSTEINE , *RING formation (Chemistry) - Abstract
An azanorbornadiene bromovinyl sulfone reagent for cysteine‐selective bioconjugation has been developed. Subsequent reaction with dipyridyl tetrazine leads to bond cleavage and formation of a pyrrole‐linked conjugate. The latter involves ligation of the tetrazine to the azanorbornadiene‐tagged protein through inverse electron demand Diels–Alder cycloaddition with subsequent double retro‐Diels–Alder reactions to form a stable pyrrole linkage. The sequence of site‐selective bioconjugation followed by bioorthogonal bond cleavage was efficiently employed for the labelling of three different proteins. This method benefits from easy preparation of these reagents, selectivity for cysteine, and stability after reaction with a commercial tetrazine, which has potential for the routine preparation of protein conjugates for chemical biology studies. [ABSTRACT FROM AUTHOR]
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- 2020
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24. The importance of immunohistochemistry analysis of p53 and Bcl-2 in patients with preoperative oncological therapy for rectal cancer.
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GEORGESCU, Teodor Florin, TURCULEȚ, Claudiu ştefan, ENACHE, Valentin, GEORGESCU, Dragoş Eugen, GEORGESCU, Mihai-Teodor, and BEURAN, Mircea
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RECTAL cancer , *PROGRESSION-free survival , *ABDOMINOPERINEAL resection , *CANCER treatment , *PROTEIN expression , *UNIVARIATE analysis - Abstract
The aim of the study was to analyze the expression of certain proteins (p53, Bcl-2) and to find correlations between the status of these markers and clinicopathological parameters, and prognosis in patients with rectal cancer. This study included 50 patients diagnosed with rectal cancer (stage I-III AJCC staging system 8th edition) who underwent preoperative oncological treatment and then rectal resection procedures in Clinical Emergency Hospital Bucharest in the period 01.01.2016 – 31.12.2017. p53 and Bcl-2 expression was examined using immunohistochemistry from pathological specimens obtained after surgery in the Clinical Emergency Hospital Bucharest pathology laboratory. We observed significant associations between Bcl-2 and age or extramural vascular invasion, and between p53 and hemoglobin value at admission. The univariate analysis of disease free survival (DFS) showed an important link between the presence of p53 and a poor prognosis, and the multivariate one demonstrated that the best outcome was registered for the patients with p53 negative/Bcl-2 positive phenotype. In conclusion, we believe that immunohistochemical detection of these proteins is an important tool in determining the prognosis of the patients with rectal cancer. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
25. Amphiphilic Polyphenylene Dendron Conjugates for Surface Remodeling of Adenovirus 5.
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Wagner, Jessica, Li, Longjie, Simon, Johanna, Krutzke, Lea, Landfester, Katharina, Mailänder, Volker, Müllen, Klaus, Ng, David Y. W., Wu, Yuzhou, and Weil, Tanja
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HYDROPHOBIC surfaces , *ADENOVIRUSES , *HYDROPHILIC surfaces , *GENE therapy , *SURFACE coatings , *POLYMERSOMES , *POLYAMIDOAMINE dendrimers - Abstract
Amphiphilic surface groups play an important role in many biological processes. The synthesis of amphiphilic polyphenylene dendrimer branches (dendrons), providing alternating hydrophilic and lipophilic surface groups and one reactive ethynyl group at the core is reported. The amphiphilic surface groups serve as biorecognition units that bind to the surface of adenovirus 5 (Ad5), which is a common vector in gene therapy. The Ad5/dendron complexes showed high gene transduction efficiencies in coxsackie‐adenovirus receptor (CAR)‐negative cells. Moreover, the dendrons offer incorporation of new functions at the dendron core by in situ post‐modifications, even when bound to the Ad5 surface. Surfaces coated with these dendrons were analyzed for their blood‐protein binding capacity, which is essential to predict their performance in the blood stream. A new platform for introducing bioactive groups to the Ad5 surface without chemically modifying the virus particles is provided. [ABSTRACT FROM AUTHOR]
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- 2020
- Full Text
- View/download PDF
26. Biomimetic Synthesis of Rhytidenone A and Mode of Action of Cytotoxic Rhytidenone F.
- Author
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Yue, Zongwei, Lam, Hiu C., Chen, Kaiqi, Siridechakorn, Ittipon, Liu, Yaxi, Pudhom, Khanitha, and Lei, Xiaoguang
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BIOMIMETIC synthesis , *MASS analysis (Spectrometry) , *MICHAEL reaction , *BIOMIMETIC materials , *NATURAL products , *ENDOPHYTIC fungi - Abstract
The rhytidenone family comprises spirobisnaphthalene natural products isolated from the mangrove endophytic fungus Rhytidhysteron rufulum AS21B. The biomimetic synthesis of rhytidenone A was achieved by a Michael reaction/aldol/lactonization cascade in a single step from the proposed biosynthetic precursor rhytidenone F. Moreover, the mode of action of the highly cytotoxic rhytidenone F was investigated. The pulldown assay coupled with mass spectrometry analysis revealed the target protein PA28γ is covalently attached to rhytidenone F at the Cys92 residue. The interactions of rhytidenone F with PA28γ lead to the accumulation of p53, which is an essential tumor suppressor in humans. Consequently, the Fas‐dependent signaling pathway is activated to initiate cellular apoptosis. These studies have identified the first small‐molecule inhibitor targeting PA28γ, suggesting rhytidenone F may serve as a promising natural product lead for future anticancer drug development. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
27. Influenza dell'apporto proteico della razione sul profilo chimico-fisico del prosciutto crudo prodotto da due razze di suini.
- Author
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Carcò, Giuseppe, Schiavon, Stefano, Casiraghi, Ernestina, Grassi, Silvia, Sturaro, Enrico, Bona, Mirco Della, Novelli, Enrico, and Gallo, Luigi
- Abstract
Copyright of Summa, Animali da Reddito is the property of Point Veterinaire Italie s.r.l. and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2020
28. The Synthesis of a 2D Ultra‐Large Protein Supramolecular Nanofilm by Chemoselective Thiol–Disulfide Exchange and its Emergent Functions.
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Xu, Yan, Liu, Yongchun, Hu, Xinyi, Qin, Rongrong, Su, Hao, Li, Juling, and Yang, Peng
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THIN films , *MATERIALS science , *EXCHANGE reactions , *CHEMISTRY , *MONOMERS , *LYSOZYMES - Abstract
The design and scalable synthesis of robust 2D biological ultrathin films with a tunable structure and function and the ability to be easily transferred to a range of substrates remain key challenges in chemistry and materials science. Herein, we report the use of the thiol–disulfide exchange reaction in the synthesis of a macroscopic 2D ultrathin proteinaceous film with the potential for large‐scale fabrication and on‐demand encapsulation/release of functional molecules. The reaction between the Cys6–Cys127 disulfide bond of lysozyme and cysteine is chemo‐ and site‐selective. The partially unfolded lysozyme–cysteine monomers aggregate at the air/water or solid/liquid interface to form an ultra‐large 2D nanofilm (900 cm2) with about 100 % optical transparency. This material adheres to a wide range of substrates and encapsulates and releases a range of molecules without significantly affecting activity. [ABSTRACT FROM AUTHOR]
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- 2020
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29. Synthesis and Target Identification of Benzoxepane Derivatives as Potential Anti‐Neuroinflammatory Agents for Ischemic Stroke.
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Gao, Cheng‐Long, Hou, Gui‐Ge, Liu, Jin, Ru, Tong, Xu, Ya‐Zhou, Zhao, Shun‐Yi, Ye, Hui, Zhang, Lu‐Yong, Chen, Kai‐Xian, Guo, Yue‐Wei, Pang, Tao, and Li, Xu‐Wen
- Subjects
- *
CEREBRAL arteries , *STROKE , *THERAPEUTICS , *IDENTIFICATION , *LEAD compounds - Abstract
Benzoxepane derivatives were designed and synthesized, and one hit compound emerged as being effective in vitro with low toxicity. In vivo, this hit compound ameliorated both sickness behavior through anti‐inflammation in LPS‐induced neuroinflammatory mice model and cerebral ischemic injury through anti‐neuroinflammation in rats subjected to transient middle cerebral artery occlusion. Target fishing for the hit compound using photoaffinity probes led to identification of PKM2 as the target protein responsible for anti‐inflammatory effect of the hit compound. Furthermore, the hit exhibited an anti‐neuroinflammatory effect in vitro and in vivo by inhibiting PKM2‐mediated glycolysis and NLRP3 activation, indicating PKM2 as a novel target for neuroinflammation and its related brain disorders. This hit compound has a better safety profile compared to shikonin, a reported PKM2 inhibitor, identifying it as a lead compound in targeting PKM2 for the treatment of inflammation‐related diseases. [ABSTRACT FROM AUTHOR]
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- 2020
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30. 3‐O‐Sulfation of Heparan Sulfate Enhances Tau Interaction and Cellular Uptake.
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Zhao, Jing, Zhu, Yanan, Song, Xuehong, Xiao, Yuanyuan, Su, Guowei, Liu, Xinyue, Wang, Zhangjie, Xu, Yongmei, Liu, Jian, Eliezer, David, Ramlall, Trudy F., Lippens, Guy, Gibson, James, Zhang, Fuming, Linhardt, Robert J., Wang, Lianchun, and Wang, Chunyu
- Subjects
- *
NEUROFIBRILLARY tangles , *HEPARAN sulfate , *SULFATES , *CELL membranes , *BINDING sites , *ALZHEIMER'S disease , *CELL culture - Abstract
Prion‐like transcellular spreading of tau in Alzheimer's Disease (AD) is mediated by tau binding to cell surface heparan sulfate (HS). However, the structural determinants for tau–HS interaction are not well understood. Microarray and SPR assays of structurally defined HS oligosaccharides show that a rare 3‐O‐sulfation (3‐O‐S) of HS significantly enhances tau binding. In Hs3st1−/− (HS 3‐O‐sulfotransferase‐1 knockout) cells, reduced 3‐O‐S levels of HS diminished both cell surface binding and internalization of tau. In a cell culture, the addition of a 3‐O‐S HS 12‐mer reduced both tau cell surface binding and cellular uptake. NMR titrations mapped 3‐O‐S binding sites to the microtubule binding repeat 2 (R2) and proline‐rich region 2 (PRR2) of tau. Tau is only the seventh protein currently known to recognize HS 3‐O‐sulfation. Our work demonstrates that this rare 3‐O‐sulfation enhances tau–HS binding and likely the transcellular spread of tau, providing a novel target for disease‐modifying treatment of AD and other tauopathies. [ABSTRACT FROM AUTHOR]
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- 2020
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31. Plant protein gels as binders in meat product analogues
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Herz, Eva Maria and Herz, Eva Maria
- Abstract
In response to concerns about the environmental, ethical, and health impacts of meat consumption, plant-based meat analogues have become an important development in the food industry. To obtain prodcts with similar texture and nutritional properties, three major components of meat products (fibrous meat particles, adipose tissue, and myofibrillar meat proteins) need to be replicated. Furthermore, different binding mechanisms, such as heat, acid, and enzyme induction, and drying, are used to create coherent matrices for plant-based meat analogues. In Chapter 2, the study focuses on the use of soy protein gels as binders, with a particular emphasis on a combination of transglutaminase (TG) induced gels. The results indicate that TG-induced soy protein gels offer promising binding strength for meat analogues. Chapter 3 explores a combination of TG and slowly acidifying glucono-delta-lactone (GDL) as a binder, showing that this approach results in acidic gels with enhanced textural properties, making it suitable for acidic meat analogue products like fermented sausages. Chapter 4 applies previously studied soy protein gels as binders for sausage analogues. The research indicates that the choice of binder content influences the cohesiveness and hardness of the sausage analogues, with drying having a significant impact on hardness. In Chapter 5, hydrated gluten is used as a binder, leading to increased cohesiveness and springiness with rising binder content. It emphasizes the importance of adhesive properties between the binder and other particles in achieving desirable meat analogue texture. Overall, the thesis underscores that plant protein suspensions can serve as effective binders for meat analogue products, provided they exhibit both sufficient hardening through network formation and adhesive properties to ensure cohesiveness. It also discusses various formulation and process-based approaches to modulate the texture of meat analogue products., Diskussionen über die ökologischen, ethischen und gesundheitlichen Auswirkungen des Fleischkonsums haben die Entwicklung von pflanzlichen Fleischersatzprodukten gefördert, die zu einem wichtigen Trend der Lebensmittelindustrie geworden sind. Um Produkte mit ähnlicher Textur und ähnlichen Ernährungseigenschaften zu erhalten, müssen drei Hauptbestandteile von Fleischprodukten (faserige Fleischpartikel, Fettgewebe und myofibrilläre Fleischproteine) nachgebildet werden. Außerdem werden verschiedene Bindungsmechanismen wie Hitze-, Säure- und Enzyminduktion sowie Trocknung eingesetzt, um eine kohärente Matrix für pflanzliche Fleischersatzprodukte zu schaffen. In Kapitel 2 konzentriert sich die Dissertation auf die Verwendung von Sojaprotein-Gelen als Bindemittel, mit besonderem Schwerpunkt auf einer Kombination von Transglutaminase (TG)-induzierten Gelen. Die Ergebnisse zeigen, dass TG-induzierte Sojaprotein-Gele ein vielversprechender Binder für Fleischersatzprodukten sind. In Kapitel 3 wird eine Kombination aus TG und langsam säuerndem Glucono-delta-lacton (GDL) als Binder untersucht. Es wird gezeigt, dass dieser Ansatz zu Gelen bei saurem pH mit verbesserten texturellen Eigenschaften führt, wodurch er sich für gesäuerte Fleischersatzprodukte wie Rohwürste eignet. In Kapitel 4 werden die zuvor untersuchten TG-und GDL-induzierten Sojaprotein-Gele als Binder für pflanzliche Würste verwendet. Die Ergebnisse zeigen, dass die Wahl des Binderanteils die Kohäsion und die Festigkeit der pflanzlichen Würste beeinflusst, wobei die Trocknung einen erheblichen Einfluss auf die Festigkeit hat. In Kapitel 5 wird hydratisiertes Gluten als Binder verwendet, was mit steigendem Binderanteil zu mehr Kohäsion und Elastizität führt. Es wird gezeigt, wie wichtig die Adhäsionseigenschaften zwischen Binder und anderen Partikeln sind, um die gewünschte fleischähnliche Textur zu erreichen. Insgesamt unterstreicht die Arbeit, dass pflanzliche Proteinsuspensionen als wirksame Binder für fleischana
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- 2023
32. Structural and conformational studies of MFS multidrug transporters QacA and LmrP
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Govaerts, Cédric, Raussens, Vincent, Martens, Chloé, Garcia-Pino, Abel, Picard, Martin PM, Matthies, Doreen MD, Jodaitis, Léni, Govaerts, Cédric, Raussens, Vincent, Martens, Chloé, Garcia-Pino, Abel, Picard, Martin PM, Matthies, Doreen MD, and Jodaitis, Léni
- Abstract
This thesis focuses on elucidating the transport mechanism of two multidrug transporters, QacA and LmrP, belonging to the major facilitator superfamily (MFS).QacA is a protein mediating antibiotic resistance from Staphylococcus aureus. Unravelling the structural insight of the protein might lead to a better understanding of the extrusion pathway of QacA. Crystallization trials yielded multiples diffracting crystals and four different structures were obtained in different conformations and with different substrates. QacA was first obtained in an outward open conformation at a resolution of 2.8 Å then in inward open state by co-crystallization with a nanobody at 3.3 Å. Out of five crystals obtained with different substrate, two were selected. The first one revealed an Ethidium bound QacA at 2.8 Å and demonstrated high flexibility of one specific transmembrane helix. The other one was co-crystallized with chlorhexidine, a divalent cationic molecule used in disinfectant. The obtained structure at 3.9 Å showed an intermediate state of the protein with the substrate outside of the primarily defined binding pocket. By combining the knowledge acquired on our crystal structures with mutagenesis, molecular dynamics simulations, and HDX-MS, we proposed a model of transport of the protein. This model significantly addresses the outstanding questions regarding QacA protein. The cumulative evidence suggests that QacA's conformational changes may not rely solely on Motif A and that pH might not significantly impact the protein's conformational landscape. Instead, the interaction between the ligand or protonation of the binding site and the flexibility of the transmembrane domain appear to drive the conformational switch. The flexibility of key transmembrane domains facilitates polyspecificity, adaptability, and conformational transitions. Additionally, the presence of potential intermediate binding sites and numerous methionine residues enables stabilization of a wide range of mol, Cette étude discute de la structure et de la dynamique de deux protéines membranaires, QacA et LmrP. Tous deux sont des exporteurs d’antibiotiques capables de conférer une résistance non négligeable aux hôtes chez lequels ils sont exprimés. Cette étude discute de la structure et de la dynamique de deux protéines membranaires, QacA et LmrP. Tous deux sont des exporteurs d’antibiotiques capables de conférer une résistance non négligeable aux hôtes chez lesquels ils sont exprimés. LmrP est une protéine exprimée par Lactoccocus Lactis. Une première structure de la protéine dans un état « ouvert vers le milieu extracellulaire » (OE) a été obtenue dans notre laboratoire. Mes recherches avaient pour but d’obtenir d’autres états de la protéine en utilisant des stabilisateurs conformationnels appelés nanobodies (nb). Une étude approfondie de ces outils biologiques en termes de stabilité, d’affinité et de capacité à stabiliser des états alternatifs a été réalisée. Un candidat potentiel, le “nb-H4” a été sélectionné car lors de la formation du complexe avec LmrP un état différent de l’OE a été mesuré. Le nb-H4 a aussi été transformé en mégabody H4 (MB-H4), résultat de la fusion génétique du nanobody avec une grosse protéine stable. Ce MB-H4 est un outil qui permettra l’étude de LmrP sous le cryo-électromicroscope afin de tenter d’obtenir sa structure par une méthode différente de la cristallographie. En effet, la formation d’un complexe entre LmrP et le MB-H4 permettra de créer une protéine assez grande que pour être observée sous le microscope. Bien que les résultats de l'étude structurelle par cristallographie et par cryo-electromicroscopie n'aient finalement pas abouti à l'obtention d'une nouvelle structure de LmrP, des avancées majeures en termes d'outils biologiques et de préparation d'échantillons ont été réalisées lors de cette étude de la protéine.QacA, qui est une protéine de Staphylococcus aureus, n'avait pas fait l'objet d'une recherche structurelle auparavant. Dans, Option Chimie du Doctorat en Sciences, info:eu-repo/semantics/nonPublished
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- 2023
33. Characterization and modulation of technofunctional properties of pea proteins
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Moll, Pascal Bernd and Moll, Pascal Bernd
- Abstract
Plant-derived ingredients for food formulation have gained increasing interest in recent years as animal products pose a higher burden on the environment. Among plant proteins, those from pea (Pisum sativum L.) are of particular interest because of their low allergenicity, low cost, high availability, and good reputation among consumers. However, the technofunctionality of pea proteins is often inferior to animal-derived proteins limiting a more widespread use in food products. These technofunctional properties include - among others - foaming, gelling, and binding of other ingredients and it depends on the food product, which functionality food scientists must utilize and optimize. Cost effective approaches to improve the technofunctionality of pea proteins are therefore desirable and would allow the industry to further implement the use of sustainable ingredients in foods. In line with these overall goals, the aim of the first section of this thesis was to characterize a commercial pea protein isolate and to modulate the physicochemical and technofunctional properties through homogenization for foaming application. The main goal of the second section was to mix pea proteins with pectin to obtain a suitable binder with desired properties for the application in meat alternatives. The mixing approach was based on previous research data that had shown that interacting protein-polysaccharide systems display a synergistic behaviour in terms of their functional properties. First section: Foams are two phase systems consisting of gas bubbles that are stabilized by surface-active ingredients such as proteins in the discontinuous, aqueous phase. The physico-chemical properties of proteins such as their solubility determines foaming performance. In Chapter I, a commercial pea protein isolate was fractionated into a water-soluble and a water-insoluble fraction for characterization. Although the two fractions were similar in protein composition, they showed distinct difference, Pflanzliche Inhaltsstoffe für die Herstellung von Lebensmitteln haben in den letzten Jahren zunehmend an Bedeutung gewonnen, da tierische Produkte eine größere Belastung für die Umwelt darstellen. Unter den pflanzlichen Proteinen sind diejenigen aus Erbsen (Pisum sativum L.) wegen ihrer geringen Allergenität, ihrer niedrigen Kosten, ihrer hohen Verfügbarkeit und ihrer Wertschätzung seitens der Verbraucher von besonderem Interesse. Die Technofunktionalität von Erbsenproteinen ist jedoch häufig schlechter als die von tierischen Proteinen, was eine breitere Verwendung in Lebensmitteln einschränkt. Zu diesen technofunktionellen Eigenschaften gehören unter anderem Schäumen, Gelieren und Binden anderer Zutaten, und es hängt vom Produkt ab, welche Funktionen Lebensmittelwissenschaftler nutzen und optimieren müssen. Kostengünstige Ansätze zur Verbesserung der Technofunktionalität von Erbsenproteinen sind daher wünschenswert und würden es der Industrie ermöglichen, die Verwendung nachhaltiger Zutaten in Lebensmitteln weiter zu beschleunigen. Basierend auf diesen übergeordneten Absichten bestand das Ziel des ersten Abschnitts dieser Arbeit darin, ein kommerzielles Erbsenproteinisolat zu charakterisieren und die physikochemischen und technofunktionellen Eigenschaften durch Homogenisierung für die Anwendung als Schaumbildner zu modulieren. Das Hauptziel des zweiten Abschnitts bestand darin, Erbsenproteine mit Pektin zu mischen, um ein geeignetes Bindemittel mit den gewünschten Eigenschaften für die Anwendung in Fleischalternativen zu erhalten. Der Mischungsansatz basierte auf früheren Forschungsdaten, die zeigten, dass interagierende Protein-Polysaccharid-Systeme eine Synergie in Bezug auf ihre funktionellen Eigenschaften aufweisen. Erster Abschnitt: Schäume sind Zweiphasensysteme, die aus Gasblasen bestehen und durch oberflächenaktive Bestandteile wie Proteine in der diskontinuierlichen, wässrigen Phase stabilisiert werden. Die physikochemischen Eigenschaften der Proteine, wie
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- 2023
34. Constitutive proteins of lumpy skin disease virion assessed by next-generation proteomics
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Schlosser-Perrin, Léo, Holzmuller, Philippe, Fernandez, Bernard, Miotello, Guylaine, Dahmani, Noureddine, Neyret, Aymeric, Bertagnoli, Stéphane, Armengaud, Jean, Caufour, Philippe, Schlosser-Perrin, Léo, Holzmuller, Philippe, Fernandez, Bernard, Miotello, Guylaine, Dahmani, Noureddine, Neyret, Aymeric, Bertagnoli, Stéphane, Armengaud, Jean, and Caufour, Philippe
- Abstract
Lumpy skin disease (LSD) virus, a ruminant poxvirus of the Capripoxvirus genus, is the etiologic agent of an economically important cattle disease categorized as a notifiable disease by the World Organisation for Animal Health. The large and complex enveloped LSD virus (LSDV) particle encloses a double-stranded linear DNA genome of 151 kbp, comprising 156 predicted ORFs, together with a variety of proteins that are not yet identified. In parallel with a recent widespread expansion of LSD, many LSDV whole genomes have been sequenced, but knowledge on protein composition of the LSDV particle remains missing. In this study, LSD mature virions (MV) from strain KSGP-0240 were purified through a multistep ultracentrifugation process. The protein composition of LSD virions was then analyzed using label-free shotgun proteomics, based upon nano-liquid chromatography (LC) and tandem mass spectrometry. This procedure resulted in the identification of a total of 111 LSDV proteins. Considering that this first MV proteome extended beyond packaged proteins into the field of contaminants, an analytical methodology was developed and made it possible to select 66 viral proteins as candidates for packaging into MV. These viral proteins were analyzed comparatively with proteins previously demonstrated to be constitutive of the vaccinia virus MV particle. Offering for the first time a comprehensive proteomic analysis of an LSDV strain, this study contributes to our understanding of the structural features of infectious LSDV MV particles and paves the way for further systematic proteomic characterization of other LSDV strains.
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- 2023
35. [Dietary management of the Parkinson's patient: a necessity at every stage of the digestive system].
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Drouot M
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- Humans, Nutritional Status, Digestive System, Parkinson Disease, Malnutrition
- Abstract
Nutrition is a recurrent theme in the care of patients with Parkinson's disease. The aim of this article is to focus on the nutritional problems encountered in this pathology, and to clarify the role of the dietician in its management., (Copyright © 2023 Elsevier Masson SAS. All rights reserved.)
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- 2024
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36. Protein-based interactions in microbial communities: the roles of amyloids and antimicrobials
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Gómez Pérez, Daniel and Kemen, Eric (Prof. Dr.)
- Subjects
molekulare Wechselwirkungen ,Antimicrobials ,Amyloide ,Arabidopsis ,Proteins ,Albugo ,Pflanzenpathogen ,Amyloids ,Plant pathogen ,Molecular interactions ,Proteine ,Microbiome ,Mikrobiologie , Amyloid , Antimikrobieller Wirkstoff , Mikroflora - Abstract
Mikrobielle Gemeinschaften sind ubiquitär vorkommende Bewohner der natürlichen Welt. Die einzelnen Mitglieder haben unzählige dynamische und komplexe Beziehungen entwickelt, um ihr eigenes Überleben in diesen Gemeinschaften und Ökosystemen sicher zu stellen. Ob durch Bildung schützender Zusammenschlüsse, wie Amyloid-gestützte Biofilme, oder durch aktive Inhibierung von konkurrierenden Organismen, sekretierte Proteine spielen eine Schlüsselrolle in mikrobiellen Interaktionen. Dennoch sind die spezifischen Mechanismen dieser Protein-basierten Interaktionen oftmals noch ungeklärt. Albugo gehört zu den obligat biotrophen Pflanzenpathogenen aus dem Phylum der Eipilze und besitzt die Fähigkeit die mikrobielle Gemeinschaft in seiner Umgebung zu verändern. Da Albugo unter anderem durch Anpassungen an einen obligat biotrophischen Lebensstil einen großen Teil der biosynthetischen Aktivität, auf die freilebende verwandte Organismen angewiesen sind, aufgeben hat, beruht sein modifizierender Einfluss auf bestimmten Proteinen. Zunächst haben wir diese Proteine in einen evolutionären Kontext gesetzt, um den Zusammenhang zwischen Lebensstil und genomischen Merkmalen in Eipilzen zu untersuchen. Das Oomycota Phylum beinhaltet nicht nur Albugo sondern auch viele weitere Pathogene, divers in Lebensstil und Wirtsorganismus. Mittels Proteomics gefolgt von heterologen Expression, haben wir darüber hinaus einige der Mikrobiota-modifizierenden von Albugo produzierten Proteine identifiziert und funktionell sowie strukturell näher bestimmt. Unser Fokus lag dabei auf den potentiell antimikrobiellen und amyloiden Eigenschaften dieser Proteine. Antimikrobielle Proteine sind interessant, da sie eine aktive Rolle in antagonistischen Interaktionen spielen können und derzeit ein großer Bedarf an neuen und spezifischen Protein-basierten antimikrobiellen Wirkstoffen besteht, die dem Aufstieg multi-resistenter Keime entgegenwirken können. Bei der Untersuchung möglicher Wirkungsweisen der Proteine von Albugo konnten wir einen Zusammenhang zwischen antimikrobieller Aktivität und intrinsischer Unordnung und positiver Ladung beobachten. Während antimikrobielle Proteine schon lange positiv im Fokus der Wissenschaft stehen, gehört die Eigenschaft der amyloiden Faltung zu einer wichtigen dennoch unterschätzten Charakteristik vieler Proteine, die bedeutend für mikrobielle Interaktionen und relevant für das Überleben vieler Organismen ist. Da amyloide Proteine ursprünglich hauptsächlich mit menschlichen Krankheitsbildern in Verbindung gebracht wurden, ist ihre Erforschung historisch limitiert auf den medizinischen Bereich. Die aktuelle Literatur jedoch zeigt, dass amyloide Faltung omnipräsent in der mikrobiellen Welt verbreitet ist und zahlreiche funktionelle Rollen übernimmt, darunter Funktionen der Verteidugung durch antimikrobielle Wirkung. Da wir amyloide Proteine von Albugo als relevant für dessen Pathogenität identifizieren konnten, sprechen unsere Resultate für eine funktionelle Bedeutung dieser charakteristischen Faltung auch in dem bislang wenig untersuchten Phylum der Eipilze. Schlussendlich haben wir unsere Untersuchung der Amyloid-formender Eigenschaften auf das Phylum der Cyanobakterien erweitert und Proteine von Synechococcus elongatus analysiert, die während der Etablierungsphase von Biofilmen vermehrt exprimiert werden. Zusammengefasst haben wir Protein-basierte Mechanismen, insbesondere jene welche antimikrobielle und Amyloid-formende Proteine involvieren, untersucht und beschrieben. Diese Mechanismen sind funktionell relevant für komplexe mikrobielle Gemeinschaften in natürlichen Ökosystemen und betonen das Potential für mögliche biotechnologische Anwendungen und deuten zudem auf die vielen Mechanismen hin, die es noch zu entdecken gibt. Microbial communities ubiquitously inhabit the natural world. Members of these have evolved countless dynamic and complex relationships to ensure their survival. Whether through formation of protective enclosures, such as biofilms held together by amyloids, or actively killing competitors as antimicrobials, secreted proteins play key roles in microbial interactions. However, much remains to be understood about the specific mechanisms of activity behind many of these interactions. The oomycetal pathogen Albugo is an obligate plant biotroph that strongly modifies its surrounding microbial community. It relies on specific proteins to exert its influence, as it has lost a large part of the biosynthetic power of free-living relatives, in part due to adaptation to an obligate biotrophic lifestyle. Firstly, we have put these proteins into an evolutionary context by studying the link between lifestyle and genome features in the oomycetes. This phylum comprises Albugo as well as other plant and animal pathogens with widely divergent lifestyles and hosts. Furthermore, through a proteomics approach followed by heterologous expression, we have pinpointed as well as functionally and structurally characterized a number of proteins from Albugo that we found to be influential in controlling the surrounding microbial community. In particular, we have focused on those with antimicrobial potential as well as the ability to form amyloids. The former are interesting due to their direct role in antagonistic interactions and the high demand for novel and highly specific peptide-based antimicrobial compounds which could aid against the rise of multidrug resistant microbes. When studying antimicrobial proteins in Albugo, we could relate their effects to intrinsic disorder and high positive charge. The amyloid fold, instead, is a prevalent and overlooked characteristic of many proteins relevant to microbial interactions and to survival in particular. Because of their original discovery as etiological agents of human pathology, their study has been historically confined to the medical field. Based on current literature, however, the amyloid fold is now known to be omnipresent in the natural microbial world where it plays varied functional roles, including defense through antimicrobial activity. The protein candidates we have described in Albugo support the presence of this characteristic fold and functional relevance in protists as well, since we found amyloids to be important for pathogenicity. Finally, we have explored the amyloid-forming characteristics of proteins released by a cyanobacterium, Synechococcus elongatus, which are upregulated during the biofilm establishment stage. On the whole, we have studied and described protein-based mechanisms relevant to complex microbial communities in natural ecosystems, focusing on amyloids and antimicrobials. These highlight the countless mechanisms that could be translated to biotechnological applications and the many that are yet to be discovered.
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- 2023
37. Characterisation of immediate early 1 protein of primate and rodent cytomegaloviruses
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Rothemund, Franziska, Stamminger, Thomas, Spellerberg, Barbara, and Marschall, Manfred
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STAT2 ,Cytomegalie-Virus ,IE1 ,FEN1 ,ddc:610 ,Proteine ,RCMV ,DDC 610 / Medicine & health ,Cytomegalovirus ,Immunology ,Muromegalovirus ,HCMV ,Immediate-early proteins - Abstract
The HCMV protein hIE1 is a multifunctional regulator that can, on one hand, antagonise the immune system in different ways and, on the other hand, promote lytic replication through interaction and stabilisation of the cellular protein hFEN1 or by transactivation of viral promoters. IE1 antagonises PML-NBs, a part of the intrinsic immune system, through interaction with PML followed by it´s deSUMOylation and disruption. Quantitative analysis, using NanoBRET assays, showed that the interaction of PML with IE1 is species-specific. Using further biological methods, it was shown that the deSUMOylation and disruption of PML is also species-specific. The species specificity, similarity of crystal structures and low sequence identity of hIE1 and rIE1 core were used to search for a possible interaction surface of hIE1 with PML. Stably expressed mutants were generated in which helices (H1, H1/2, H4, H5, H8 or H10/11) of hIE1 were exchanged with helices of rIE1. As none of these mutants were able to interact with PML or disperse it, we assume that the interaction surface consists of several protein helices. Furthermore, the functional integrity of the mutants was investigated by analysing additional hIE1 functions. A possible interaction site of hFEN1 was identified in helix 1 of hIE1, while the other helices have no influence on the interaction. Furthermore, since we found that interaction of hIE1 with hFEN1 is not sufficient for protein stabilisation, we assume that recruitment of an additional cellular factor is required for hFEN1 stabilisation. Transactivation of promoters was investigated by Gaussia luciferase assays and showed that only the mutant carrying helix 1 exhibited activity. In summary, these results indicate that the exchange of protein helices affects different functions of hIE1. However, no interaction surface of IE1 and PML could be identified. In addition, various functions of rIE1 were analysed in comparison to hIE1. It could be shown that while hFEN1 interaction and stabilisation is species-specific, the core domain of rIE1 is sufficient to activate viral promoters and antagonise the innate immune system through STAT2 interaction and relocalisation. Furthermore, since rIE1, unlike hIE1, cannot colocalise with mitotic chromatin, RCMV probably encodes a different protein that ensures genome maintenance. These results suggest that specific functions of IE1 have been conserved during evolution, which are probably crucial for maintaining CMV in different species.
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- 2023
38. Der „Sekundenkleber" der Stummelfüßer: Strategien der Natur als Vorbild für nachhaltige Biomaterialien.
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Bär, Alexander, Sena Oliveira, Ivo, Schmidt, Stephan, Harrington, Matthew J., and Mayer, Georg
- Abstract
Summary Novel insights into the "superglue" of velvet worms The biological "superglue" of velvet worms provides inspiration towards circular processing of advanced polymers. In nature, velvet worms employ a fluid, protein‐rich secretion for hunting and defense, which forms rapidly into stiff fibers. The fluid‐to‐fiber transition occurs outside the body without regulations, indicating that the "instructions" for assembly are programmed into the protein building blocks. Electrostatic interactions between oppositely charged protein domains and free ions drive protein folding, self‐organization (coacervation) and stabilization of the building blocks into nanoscale droplets. Yet, nanodroplets can be instantly transformed via simple mechanical stimulus as proteins partially unfold, merge together and form a strong network, which solidifies into a fiber. The mechanism is based on basic physico‐chemical principles. Thus, by extracting these principles, new methods of synthesizing sustainable polymer‐based materials can be developed. [ABSTRACT FROM AUTHOR]
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- 2019
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39. Squaramate‐Modified Nucleotides and DNA for Specific Cross‐Linking with Lysine‐Containing Peptides and Proteins.
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Ivancová, Ivana, Pohl, Radek, Hubálek, Martin, and Hocek, Michal
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DNA , *NUCLEIC acids , *PEPTIDES , *NUCLEOTIDES , *DNA synthesis , *DNA primers , *HISTONES - Abstract
Squaramate‐linked 2′‐deoxycytidine 5′‐O‐triphosphate was synthesized and found to be good substrate for KOD XL DNA polymerase in primer extension or PCR synthesis of modified DNA. The resulting squaramate‐linked DNA reacts with primary amines to form a stable diamide linkage. This reaction was used for bioconjugations of DNA with Cy5 and Lys‐containing peptides. Squaramate‐linked DNA formed covalent cross‐links with histone proteins. This reactive nucleotide has potential for other bioconjugations of nucleic acids with amines, peptides or proteins without need of any external reagent. [ABSTRACT FROM AUTHOR]
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- 2019
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40. Palladium‐Mediated Cleavage of Proteins with Thiazolidine‐Modified Backbone in Live Cells.
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Mann, Guy, Satish, Gandhesiri, Meledin, Roman, Vamisetti, Ganga B., and Brik, Ashraf
- Subjects
- *
SPINE , *PROTEINS , *CHEMICAL elements , *ACTIVATION (Chemistry) , *PROTEIN synthesis - Abstract
Chemical protein synthesis and biorthogonal modification chemistries allow production of unique proteins for a range of biological studies. Bond‐forming reactions for site‐selective protein labeling are commonly used in these endeavors. Selective bond‐cleavage reactions, however, are much less explored and still pose a great challenge. In addition, most of studies with modified proteins prepared by either total synthesis or semisynthesis have been applied mainly for in vitro experiments with very limited extension to live cells. Reported here is an approach for studying uniquely modified proteins containing a traceless cell delivery unit and palladium‐based cleavable element for chemical activation, and monitoring the effect of these proteins in live cells. This approach is demonstrated for the synthesis of a caged ubiquitin‐aldehyde, which was decaged for the inhibition of deubiquitinases in live cells. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
41. Eine Threonin‐bildende Oxazetidinaminosäure für die chemische Synthese von Proteinen mittels KAHA‐Ligation.
- Author
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Baldauf, Simon, Schauenburg, Dominik, and Bode, Jeffrey W.
- Subjects
- *
MONOMERS - Abstract
Die Ligation von α‐Ketosäure‐Hydroxylamin (KAHA) erlaubt die chemoselektive Verknüpfung von ungeschützten Peptidsegmenten unter Bildung einer Amidbindung. Die zurzeit meistgenutzte Variante basiert auf einem fünfgliedrigen cyclischen Hydroxylamin, welches einen Homoserinester als Hauptligationsprodukt bildet. Ein neues viergliedriges cyclisches Hydroxylamin wurde synthetisiert, um die natürliche Aminosäure Threonin an der Ligationsstelle bildet. Dieses Monomer wurde für die Synthese der Proteine UbcH5a (146 Aminosäuren) und TI I27 (89 Aminosäuren) eingesetzt. Sowohl das so synthetisierte UbcH5a als auch die Variante, die unter Verwendung des fünfgliedrigen zyklischen Hydroxylamins synthetisiert wurde, zeigten identische Aktivitäten gegenüber der rekombinanten Variante in einem Ubiquitinierungs‐Assay. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
42. Reevaluating Protein Photoluminescence: Remarkable Visible Luminescence upon Concentration and Insight into the Emission Mechanism.
- Author
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Wang, Qian, Dou, Xueyu, Chen, Xiaohong, Zhao, Zihao, Wang, Shuang, Wang, Yunzhong, Sui, Kunyan, Tan, Yeqiang, Gong, Yongyang, Zhang, Yongming, and Yuan, Wang Zhang
- Subjects
- *
LUMINESCENCE , *PHOTOLUMINESCENCE , *AMINO acid residues , *PHOSPHORESCENCE , *PROTEINS , *AMINO acids , *SERUM albumin - Abstract
It is a textbook knowledge that protein photoluminescence stems from the three aromatic amino acid residues of tryptophan(Trp), tyrosine (Tyr), and phenylalanine (Phe), with predominant contributions from Trp. Recently, inspired by the intrinsic emission of nonaromatic amino acids and poly(amino acids) in concentrated solutions and solids, we revisited protein light emission using bovine serum albumin (BSA) as a model. BSA is virtually nonemissive in dilute solutions (≤0.1 mg mL−1), but highly luminescent upon concentration or aggregation, showing unique concentration‐enhanced emission and aggregation‐induced emission (AIE) characteristics. Notably, apart from well‐documented UV luminescence, bright blue emission is clearly observed. Furthermore, persistent room‐temperature phosphorescence (p‐RTP) is achieved even in the amorphous solids under ambient conditions. This visible emission can be rationalized by the clustering‐triggered emission (CTE) mechanism. These findings not only provide an in‐depth understanding of the emissive properties of proteins, but also hold strong implications for further elucidating the basis of tissue autofluorescence. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
43. Neuer stofflicher Nutzungspfad von Treberpresswasser aus Biertreber unter Einsatz von Membrantrenntechnik in Lebens‐ oder Nahrungsergänzungsmitteln.
- Author
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Grahl, Franz, Beitlich, Nicole, Fechter, Michael, Speer, Karl, Herdegen, Volker, Eßlinger, Michael, Haseneder, Roland, and Repke, Jens‐Uwe
- Subjects
- *
MICROFILTRATION , *FOOD additives , *BREWING industry , *MEMBRANE permeability (Biology) , *NANOFILTRATION , *GRAIN , *CRAFT beer - Abstract
A new utilization concept for brewers' spent grains, the main byproduct of the brewing industry, is introduced. First results from an ongoing research project beyond the actual state of the art of brewers' spent grains usage are presented. It is focused on developing an adaptable selective separation procedure of valuable components from press water arising by mechanical dewatering of brewers' spent grains for the use as food additive. Experimental results on micro‐, ultra‐ and nanofiltration for specific separation of the ingredients focused on substance classes are presented. The membrane applicability is evaluated by the membrane permeability and by the retention of valuable components like proteins and polyphenols. Results showed that the microfiltration of press water with a rotating membrane is comparable to commercial beer microfiltration in terms of permeate flux. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
44. Ligation of Soluble but Unreactive Peptide Segments in the Chemical Synthesis of Haemophilus Influenzae DNA Ligase.
- Author
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Zhang, Baochang, Deng, Qiang, Zuo, Chong, Yan, Bingjia, Zuo, Chao, Cao, Xiu‐Xiu, Zhu, Ting F., Zheng, Ji‐Shen, and Liu, Lei
- Subjects
- *
HAEMOPHILUS influenzae , *CHEMICAL synthesis , *LIGHT transmission , *DNA , *GUANIDINIUM chlorides , *DRUG solubility - Abstract
During the total chemical synthesis of the water‐soluble globular Haemophilus Influenzae DNA ligase (Hin‐Lig), we observed the surprising phenomenon of a soluble peptide segment that failed to undergo native chemical ligation. Based on dynamic light scattering and transmission electron microscopy experiments, we determined that the peptide formed soluble colloidal particles in a homogeneous solution containing 6 m guanidine hydrochloride. Conventional peptide performance‐improving strategies, such as installation of a terminal/side‐chain Arg tag or O‐acyl isopeptide, failed to enable the reaction, presumably because of their inability to disrupt the formation of soluble colloidal particles. However, a removable backbone modification strategy recently developed for the synthesis of membrane proteins did disrupt the formation of the colloids, and the desired ligation of this soluble but unreactive system was eventually accomplished. This work demonstrates that an appropriate solution dispersion state, in addition to good peptide solubility, is a prerequisite for successful peptide ligation. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
45. Mechanische Aktivierung beschleunigt die Hydrolyse der Amidbindung drastisch, vergleichbar der Aktivität von Enzymen.
- Author
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Pill, Michael F., East, Allan L. L., Marx, Dominik, Beyer, Martin K., and Clausen‐Schaumann, Hauke
- Subjects
- *
POLYAMIDES , *ENZYMES - Abstract
Peptidbindungen verbinden Aminosäuren in Proteinen und Polypeptiden. Sie zählen zu den Amidbindungen, die Proteinen und synthetischen Polyamiden ihre enorme Stärke verleihen. Obwohl Proteine und Polyamide in Natur und Technik mechanischen Kräften ausgesetzt sind, ist der Einfluss der Kraft auf die Stabilität der Amid‐ und Peptidbindung noch weitgehend unbekannt. Mittels Einzelmolekülkraftspektroskopie entdeckten wir, dass Kräfte von nur einigen hundert pN die Amidhydrolyse 109‐fach beschleunigen, was bisher nur von proteolytischen Enzymen bekannt war. Die drastische Beschleunigung bei geringer Kraft geht einer moderaten weiteren Beschleunigung bei Kräften im nN‐Bereich voraus. Quantenmechanochemische Ab‐initio‐Rechnungen erklären diese experimentellen Befunde sowohl mechanistisch als auch kinetisch. Unsere Ergebnisse zeigen, dass die Stabilität der Amidbindung entgegen bisherigen Annahmen stark kraftabhängig ist. Sie vermitteln ein grundlegendes Verständnis der Rolle mechanischer Aktivierung bei der Amidhydrolyse und weisen den Weg für mögliche Anwendungen, vom Recycling makromolekularer Reststoffe bis hin zum Design biotechnologisch hergestellter proteolytischer Enzyme. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
46. Chiral Semiconductor Nanoparticles for Protein Catalysis and Profiling.
- Author
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Hao, Changlong, Gao, Rui, Li, Yue, Xu, Liguang, Sun, Maozhong, Xu, Chuanlai, and Kuang, Hua
- Subjects
- *
SEMICONDUCTOR nanoparticles , *COPPER sulfide , *PENICILLAMINE , *PHOTOCATALYSTS , *IRRADIATION - Abstract
In this study, via a simple one‐step method, chiral copper sulfide quantum dots (d/l‐QDs) were prepared using d‐/l‐penicillamine (d‐/l‐Pen). The anisotropy factor of d/l‐QDs was as high as 0.01. The d/l‐QDs can be used as photocatalysts to cleave proteins. Notably, the l‐QDs displayed the highest catalytic performance under left‐circularly polarized light irradiation. Mechanistic investigations indicate the generation of hydroxyl radicals as the reactive species that cause the cutting of proteins. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
47. High‐Resolution Protein 3D Structure Determination in Living Eukaryotic Cells.
- Author
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Tanaka, Takashi, Ikeya, Teppei, Kamoshida, Hajime, Suemoto, Yusuke, Mishima, Masaki, Shirakawa, Masahiro, Güntert, Peter, and Ito, Yutaka
- Subjects
- *
PROTEINS , *EUKARYOTIC cells , *BIOMOLECULES , *NUCLEAR magnetic resonance , *CALMODULIN , *UBIQUITIN - Abstract
Proteins in living cells interact specifically or nonspecifically with an enormous number of biomolecules. To understand the behavior of proteins under intracellular crowding conditions, it is indispensable to observe their three‐dimensional (3D) structures at the atomic level in a physiologically natural environment. We demonstrate the first de novo protein structure determinations in eukaryotes with the sf9 cell/baculovirus system using NMR data from living cells exclusively. The method was applied to five proteins, rat calmodulin, human HRas, human ubiquitin, T. thermophilus HB8 TTHA1718, and Streptococcus protein G B1 domain. In all cases, we could obtain structural information from well‐resolved in‐cell 3D nuclear Overhauser effect spectroscopy (NOESY) data, suggesting that our method can be a standard tool for protein structure determinations in living eukaryotic cells. For three proteins, we achieved well‐converged 3D structures. Among these, the in‐cell structure of protein G B1 domain was most accurately determined, demonstrating that a helix‐loop region is tilted away from a β‐sheet compared to the conformation in diluted solution. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
48. Transient Incomplete Separation Facilitates Finding Accurate Equilibrium Dissociation Constant of Protein–Small Molecule Complex.
- Author
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Sisavath, Nicolas, Rukundo, Jean‐Luc, Le Blanc, J. C. Yves, Galievsky, Victor A., Bao, Jiayin, Kochmann, Sven, Stasheuski, Alexander S., and Krylov, Sergey N.
- Subjects
- *
THERMOPHORESIS , *SMALL molecules , *FLUORESCENCE , *ISOTHERMAL titration calorimetry , *ADSORPTION (Chemistry) - Abstract
Current practical methods for finding the equilibrium dissociation constant, Kd, of protein–small molecule complexes have inherent sources of inaccuracy. Introduced here is "accurate constant via transient incomplete separation" (ACTIS), which appears to be free of inherent sources of inaccuracy. Conceptually, a short plug of the pre‐equilibrated protein–small molecule mixture is pressure‐propagated in a capillary, causing fast transient incomplete separation of the complex from the unbound small molecule. A superposition of signals from these two components is measured near the capillary exit and used to calculate a fraction of unbound small molecule, which, in turn, is used to calculate Kd. Herein the validity of ACTIS is proven theoretically, its accuracy is verified by computer simulation, and its practical use is demonstrated. ACTIS has the potential to become a reference‐standard method for determining Kd values of protein–small molecule complexes. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
49. Control Mechanism for Carbon‐Chain Length in Polyunsaturated Fatty‐Acid Synthases.
- Author
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Hayashi, Shohei, Naka, Mai, Ikeuchi, Kenshin, Ohtsuka, Makoto, Kobayashi, Kota, Satoh, Yasuharu, Ogasawara, Yasushi, Maruyama, Chitose, Hamano, Yoshimitsu, Ujihara, Tetsuro, and Dairi, Tohru
- Subjects
- *
REACTION mechanisms (Chemistry) , *CHAIN length (Chemistry) , *POLYENES , *FATTY acid synthesis , *EICOSAPENTAENOIC acid - Abstract
Polyunsaturated fatty acids (PUFAs) such as docosahexaenoic acid (DHA) and eicosapentaenoic acid (EPA) are essential fatty acids. PUFA synthases are composed of three to four subunits and each create a specific PUFA without undesirable byproducts. However, detailed biosynthetic mechanisms for controlling final product profiles have been obscure. Here, the bacterial DHA and EPA synthases were carefully dissected by in vivo and in vitro experiments. In vitro analysis with two KS domains (KSA and KSC) and acyl‐acyl carrier protein (ACP) substrates showed that KSA accepted short‐ to medium‐chain substrates while KSC accepted medium‐ to long‐chain substrates. Unexpectedly, condensation from C18 to C20, the last elongation step in EPA biosynthesis, was catalyzed by KSA domains in both EPA and DHA synthases. Conversely, condensation from C20 to C22, the last elongation step for DHA biosynthesis, was catalyzed by the KSC domain in DHA synthase. KSC domains therefore determine the chain lengths. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
50. Les biosimilaires, des biomédicaments comme les autres ?
- Author
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Mrozovski, Jean Michel
- Abstract
Les biosimilaires sont les spécialités d'aujourd'hui et plus encore de demain. Il est essentiel que le pharmacien investisse le plus complètement possible ce champ de dispensation, notamment pour donner à ses patients une information rigoureuse. Biosimilars are specialities today and will be even more so in the future. It is essential that pharmacists master this area of dispensing, notably to be able to give their patients accurate information. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
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