104 results on '"Patil AR"'
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2. Enhancing Tourism Potential of Ramtek Town, Maharashtra
- Author
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Patil, Ar. Niharika, primary
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- 2023
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3. Not Just Piece of Paper but Powerful Weapon in Professional Practice-The Contract
- Author
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Patil, Ar. Meghana
- Published
- 2018
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4. Role of Traditional Wisdom in Design Education for Global Product Development
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Patil, Ar Geetanjali S., Ranadive, Ar Suruchi A., Chakrabarti, Amaresh, editor, and Prakash, Raghu V., editor
- Published
- 2013
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5. Single-cell multi-omics analysis of human pancreatic islets reveals novel cellular states in type 1 diabetes
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Fasolino M, Schwartz GW, Patil AR, Mongia A, Golson ML, Wang YJ, Morgan A, Liu C, Schug J, Liu J, Wu M, Traum D, Kondo A, May CL, Goldman N, Wang W, Feldman M, Moore JH, Japp AS, Betts MR, HPAP Consortium, Faryabi RB, Naji A, Kaestner KH, and Vahedi G
- Subjects
General Economics, Econometrics and Finance - Published
- 2022
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6. Biochemical and shelf life characteristics of air packed pangasius (Pangasianodon hypophthalmus) during chill storage
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Patil, AR, primary, Chogale, ND, additional, Pagarkar, AU, additional, Koli, JM, additional, Bhosale, BP, additional, Pathan, DI, additional, Sawant, SS, additional, and Sarang, SS, additional
- Published
- 2020
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7. Comparative Evaluation of Efficacy of Iontophoresis with 0.33% Sodium Fluoride Gel and Diode Laser Alone on Occlusion of Dentinal Tubules
- Author
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Girish Suragimath, Kale, Sameer Zope, Keshava Abbayya, Patil Ar, and Siddhartha Varma
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dentinal hypersensitivity ,Scanning electron microscope ,Clinical Biochemistry ,Dentistry ,lcsh:Medicine ,Comparative evaluation ,law.invention ,030207 dermatology & venereal diseases ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,laser therapy ,law ,Occlusion ,Sodium fluoride ,Medicine ,Diode ,Iontophoresis ,treatment ,business.industry ,lcsh:R ,030206 dentistry ,General Medicine ,Laser ,Dentistry Section ,Dentinal Tubule ,chemistry ,business ,Biomedical engineering - Abstract
Introduction Dentinal Hypersensitivity (DH) is one of the most commonly encountered clinical problems. Literature reveals no specific therapy to satisfactorily eliminate dentinal hypersensitivity. Aim The aim of this study was to assess and compare the efficacy of iontophoresis with 0.33% Sodium Fluoride (NaF) gel and diode laser alone in dentinal tubule occlusion. Materials and methods This in vitro study included 20 teeth with intact root surfaces unaltered by extraction procedure for specimen preparation. Each tooth was cleaned, air dried and cut into three sections. Total 60 sections were prepared (30 longitudinal and 30 transverse sections), which were acid etched. In control group, no treatment was carried. In iontophoresis treatment group, samples were inserted into a foam tray containing 0.33 % NaF Gel and subjected to 1.5 mA output current for three minutes. In laser treatment group, specimens were lased with 980 nm diode laser at 0.5 W/PW (62.2J /cm2) in a noncontact mode for 30 seconds. Specimens were evaluated under Scanning Electron Microscope (SEM) at 10KV to 20KV under x 2000, x5000 magnification for surface characteristics and patency of dentinal tubules. Total number of tubules visible, open, completely and partially occluded were recorded in each microphotograph and compared. Results On comparison, laser group showed the least number of open tubules i.e., 130 (31.1%) followed by iontophoresis group, 155 (51.32%) and control group 417 (100%). Conclusion Diode laser application provided better results as compared to iontophoresis on occlusion of dentinal tubules. Hence, it can be used to treat the patients with DH.
- Published
- 2017
8. Thermo gravimetric analysis study of kinematic parameters and statistical analysis for big sheep horn/scapula bone of Indian origin
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Patil Arun Y., Mysore Tajammul H.M., Kulkarni Akshay B., Mathad Shridhar N., and Patil Mallikarjunagouda B.
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big sheep horn ,kinetic parameter ,tga ,dsc ,statistical analysis ,Technology (General) ,T1-995 - Abstract
The current work focus on a novel biomaterial extracted from Indian origin Deccani-Big sheep horn/scapula bone for exhaustive thermal property study using Thermo gravimetric analysis (TGA) and statistical analysis study using log normal to determine the failure rate of brittle material. The TGA shows four regions, first region in the water reduction range, second region is plateau with no change in weight, third regionfor decomposition and last plateau showing stable final product. Broido, Coats-Redfern, Chang and Horowitz-Metzger approximations are employed to compute the activation energy (Ea) of samples during decomposition. The observed average mean tensile strength is 63.38MPa whereas with the help of Weibull distribution shows 64.55MPa with R2 as 0.94.
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- 2023
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9. Optimization study on wear behaviour of aluminium 7075 hybrid composite containing silicon carbide and aluminium oxide using Taguchi method
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Budapanahalli Shridhar H., Mallur S.B., Patil Aruns Y., and Kumar Raman
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aluminium 7075 ,silicon carbide (sic) ,aluminium oxide (al2o3) ,wear analysis ,taguchi method ,Technology (General) ,T1-995 - Abstract
Due to light weight, high strength to weight ratio, higher wear resistance aluminium and its alloy have got greater consideration as a matrix material in most of the composite applications. Al MMCs is used in preparation of pistons, cylinder barrel, break discs, gears, valves etc. Use of Al-Si alloys are increasing in areas of automobile and aerospace industries. Present study aims to investigate about wear behaviour of aluminium 7075 hybird composite with silicon carbide (SiC) and aluminium oxide (Al2O3) as reinforcements. Hybird composite material were processed through stir casting process. Addition of SiC is 3,6 and 9 wt.% whereas Al2O3 is fixed 5 wt.%. Wear test was conducted through unlubricated conditions. Wear rate was been recorded after each set of experiment carried through wear test. To optimize the control parameters Taguchi method was used as a statistical tool. L9 orthogonal array was utilized and investigational design was based on control factors namely SiC wt.%, load, sliding distance and response factor was wear rate to study the wear performance. Empirical relation was established for wear rate in relations of control variables by multiple regression analysis. Finally, analysis of variance (ANOVA) was used to evaluate the impact of specific factors on wear rate. MINITV.17.1.0 was used to analyse the results. It was observed that load and SiC wt.% were significant factor affecting response variable. Higher values of SiC wt.% increased the wear resistance.
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- 2023
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10. A Study on Thermal Performances of Historic Buildings – A Review
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Supriya Mahesh Patil, Ar., primary and Kasthurba, A. K., primary
- Published
- 2018
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11. Thermal studies of big sheep horn as thermal barrier coating (TBC) material for gas turbine compressor blade
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Angadi Vijet, Patil Arun Y., Mathad Shridhar N., and Patil Mallikarjunagouda B.
- Subjects
big sheep horn ,deccani ,thermal property ,simulation ,high temperature application ,Technology (General) ,T1-995 - Abstract
This research focuses on the decomposition temperature of a large sheep horn from Haveri District, Karnataka, India, which is 302.9°C. It also demonstrates the possible use of large sheep horn in the aerospace industry. It can be utilised as a Thermal Barrier Coating (TBC) in high-pressure compressor blades of jet engines. Because of its poor thermal conductivity and specific heat capacity, it is a superb insulator, and temperatures throughout the TBC take around 10 minutes to match.
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- 2022
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12. Refractory vasodilatory shock secondary to metformin overdose supported with VA ECMO
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Crystal Ives Tallman, Yu Zhang, Nicholas Black, Kara Lynch, Mohamed Fayed, and Patil Armenian
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Metformin ,Poisons ,Vasoplegia ,Lactic acidosis ,Extracorporeal membrane oxygenation ,Toxicology. Poisons ,RA1190-1270 - Abstract
Metformin overdose may result in vasodilatory shock, lactic acidosis and death. Hemodialysis is an effective means of extracorporeal elimination, but may be insufficient in the shock setting. We present a case of a 39 yo male who presented with hypotension, coma, hypoglycemia, and lactate of 6.5 mmol/L after ingesting an unknown medication. Metformin overdose was suspected, and he was started on hemodialysis. He developed profound vasoplegia refractory to high doses of norepinephrine, vasopressin, epinephrine and phenylephrine. Venoarterial extracorporeal membrane oxygenation (VA ECMO) was initiated and he had full recovery. Serum analysis with high resolution liquid chromatography mass spectrometry revealed a metformin level of 678 μg/mL and trazodone level of 2.1 μg/mL. This case is one of only a handful of reported cases of metformin overdose requiring ECMO support, and we report the highest serum metformin levels in the literature to date. We recommend early aggressive hemodialysis and vasopressor support in all suspected cases of metformin toxicity as well as VA ECMO if refractory to these therapies. Objective: We present a case of vasodilatory shock secondary to metformin overdose requiring venoarterial extracorporeal membrane oxygenation (VA ECMO) support. This case is one of only a handful of reported cases of metformin overdose requiring ECMO support, and we report the highest serum metformin levels in the literature to date. Data sources: University of San Francisco, Fresno. Study design: Case report. Data extraction: Clinical records and high resolution liquid chromatography mass spectroscopy analysis. Data synthesis: None. Conclusions: Venoarterial ECMO provided an effective means of hemodynamic support for a patient with severe metformin toxicity.
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- 2022
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13. Effects of supplementing growing steers with high levels of partially hydrogenated tallow on feed intake, digestibility, live weight gain, and carcass characteristics
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C.E. Heird, A. L. Goetsch, Patil Ar, and P. K. Lewis
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Male ,Taste ,Meat ,Forage ,Weight Gain ,Fats ,Palmitic acid ,Eating ,chemistry.chemical_compound ,Latin square ,Tallow ,Grazing ,Genetics ,medicine ,Animals ,Food science ,Chemistry ,food and beverages ,General Medicine ,Animal Feed ,Dietary Fats ,Tenderness ,Food, Fortified ,Hay ,Cattle ,Digestion ,Animal Science and Zoology ,medicine.symptom ,Food Science - Abstract
Effects of supplementing growing steers consuming forage-based diets with high levels of partially hydrogenated tallow on feed intake, digestibility, live weight gain, and carcass characteristics were determined in this study. In Exp. 1, Holstein steer calves were fed bermudagrass hay alone (Control) and with a ground corn-based concentrate at .95% BW (DM basis) plus partially hydrogenated tallow at 0 (Basal), .33 (low fat; LF), or .67% BW (high fat; HF) in a Latin square. Total DMI was increased by concentrate supplementation and was lower for HF than for LF (P.05; 3.18, 3.83, 4.25, and 3.17 kg/d for Control, Basal, LF, and HF, respectively). In Exp. 2, grazing Angus x Hereford steers (270 kg +/- .4 initial shrunk BW) were fed the same supplements as in Exp. 1 for 84 or 98 d and slaughtered. Live weight gain was increased (P.05) by concentrate supplementation (1.01, 1.34, 1.41, and 1.30 kg/d for Control, Basal, Low, and High, respectively). The concentration of total lipids in longissimus muscle was 2.51, 2.53, 3.05, and 3.03% of wet tissue for Control, Basal, LF, and HF, respectively (Basalthe mean of LF and HF; P.07); the proportion of palmitic acid in total fatty acids was similar among treatments. Fat supplementation did not markedly affect sensory, taste, or tenderness characteristics of longissimus muscle. In conclusion, supplementing grazing beef steers with high levels of partially hydrogenated tallow, with slaughter at approximately 400-kg shrunk BW, tended to increase fat in longissimus muscle without altering the palmitic acid level in fatty acids, although sensory, taste, and tenderness characteristics were not modified.
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- 1993
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14. Gastrointestinal and immunological responses of senior dogs to chicory and mannan-oligosaccharides
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Grieshop, Christine, primary, Flickinger, Elizabeth, additional, Bruce, Kari, additional, Patil, AR, additional, Czarnecki-Maulden, GL, additional, and Fahey, GC, additional
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- 2004
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15. Optimization of Sluice Gate under Fatigue Life Subjected for Forced Vibration by Fluid Flow
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Poornakanta Handral, Kadam Kartik, Pawar Darshan, Medar Kiran, Makandar Iliyas, Patil Arun Y., and Kotturshettar Basavaraj B.
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sluice gate ,fluid force ,fatigue life ,corrosion ,optimization ,modal ,water flow ,Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
A ‘Sluice’ is a water-flow control gate works with sliding. So, it’s a mill race, flume or a penstock, channelling water towards a water mill, traditionally a wood or metal barrier sliding in grooves that are set in the sides of the waterway. They are used in wastewater treatment of plants, and control water level and flow in watermills. However, Sluices are subjected to temperature, environment that supports corrosion, impact loading and so on. Many of those equipments operate during long time in industries and reliability is one of the most important aspects of work, there arose questions of reliability on those structural elements, because the people working nearby will be in danger due to involvement of heavy loaded parts during various possible working states. Considering these factors the gates used in industries are subjected for “Fatigue Analysis”, but the normal V-channel gates which undergo corrosion, wear and continuous stress due to water flow which leads to fatigue failure, loss of material and wastage of water are still in need of this analysis. Hence there is need of an analysis to optimize the gate in terms of material, shape, and size. This paper helps to determine the fatigue strength, wear life of Sluice gate in “V-Channels”. So, by using the ANSYS Workbench software, sluice gate is analysed for fatigue life under fluid flow.
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- 2018
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16. Use of ′Mishri′ A smokeless form of tobacco during pregnancy and its perinatal outcome
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Pratinidhi Asha, Gandham Sudesh, Shrotri Aparna, Patil Archana, and Pardeshi Shrikar
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Smokeless Tobacco ,perinatal outcome ,Mishri - tobacco containing teeth cleaning powder ,stopping consumption of tobacco ,Public aspects of medicine ,RA1-1270 - Abstract
Background: Use of ′Mishri′ (Tobacco containing teeth cleaning powder) is common in the central and southern part of India. Objectives: To study the effects of Mishri use on the fetus during pregnancy and the perinatal outcome, and stopping its use. Materials and Methods: All apparently healthy pregnant women were enrolled at 20 weeks of gestation from rural Maharashtra, India. Information related to use and giving up of Mishri, previous obstetrical history, current pregnancy, delivery and outcome during the perinatal period were recorded. Appropriate tests of significance were applied. Results: Out of 705 enrolled pregnant women, 218 (30.9%) were using Mishri. The proportion of women with complications during the previous perinatal period, complaints and complications during the current pregnancy/delivery and the number of stillbirths were significantly more among Mishri users. A relative risk of abnormal delivery was 2.7 for the users. In spite of counseling, 153 women never stopped the use of Mishri and gave birth to babies weighing on an average 169.9 gm less (statistically significant) than babies born from the group that never used it. Babies of 28.8% who stopped/reduced consumption of Mishri were significantly benefited. Conclusions: The improvement seen in babies born to 28.8% mothers who stopped/reduced consumption of Mishri by 32 weeks during the current pregnancy is of paramount importance in the developing world for primary prevention of low birth weight.
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- 2010
17. Implementing CDIO Approach in preparing engineers for Space Industry
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Daneykin Yury, Daneikina Natalia, Solovyov Michail, and Patil Arun
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Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
The necessity to train highly qualified specialists leads to the development of the trajectory that can allow training specialists for the space industry. Several steps have been undertaken to reach this purpose. First, the University founded the Space Instrument Design Center that promotes a wide range of initiatives in the sphere of educating specialists, retraining specialists, carrying out research and collaborating with profiled enterprises. The University introduced Elite Engineering Education system to attract talented specialist and help them to follow individual trajectory to train unique specialist. The paper discusses the targets necessary for achievement to train specialists. Moreover, the paper presents the compliance of the attempts with the CDIO Approach, which is widely used in leading universities to improve engineering programs.
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- 2017
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18. Numerical modelling for the distribution of 137 Cs and 131 I in the scheldt basin after a potential nuclear accident.
- Author
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Patil AR, Fiengo Perez F, Lambrechts J, Draoui I, and Deleersnijder E
- Abstract
Using the discontinuous Galerkin method in the SLIM modelling framework, we study the transport in the Scheldt basin and adjacent coastal area of radionuclides possibly emitted by Doel nuclear power plant in the aftermath of an accident. The contamination pathways taken into consideration are direct liquid releases into the water and deposition via the atmosphere. In past nuclear accidents, several radionuclides were released, among which,
131 I and137 Cs were considered herein. The hydrodynamics and atmospheric conditions are selected to simulate the worst-case scenario in the domain of interest. The radionuclide deposition towards the North Sea results in131 I and137 Cs being transported to the Belgian coastal region. In case of deposition towards the river, radioactivity from upstream tributaries can reach the estuary within days. Direct liquid releases spread downstream until the mouth of the estuary after about few weeks and extend upstream into the Scheldt River. In all cases, due to tidal influence, the estuary becomes most vulnerable, with radioactivity potentially circulating for over a month. Additionally, higher river discharge resulted in decreased radioactivity levels in the estuary., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Ltd. All rights reserved.)- Published
- 2024
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19. Integrating 3,4-Dihydro-2 H -1,4-oxazine into Peptides as a Modification: Silver Triflate-Catalyzed Cyclization of N -Propargyl N -Sulfonyl Amino Alcohols for SPPS Applications.
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Patil AR and Marelli UK
- Abstract
We present a methodology yielding 3,4-dihydro-2 H -1,4-oxazine by cyclization of N -propargyl N -sulfonyl amino alcohols using silver triflate as a catalyst at ambient temperature. Additionally, we showcase the applicability of this methodology in solid phase peptide synthesis (SPPS) to introduce the oxazine heterocyclic ring into short peptides containing serine and threonine. Notably, Rink amide resin supported the on-resin formation of 3,4-dihydro-2 H -1,4-oxazine, while 2-CTC resin facilitated the oxazine formation in a one-pot process involving peptide cleavage, deprotection, and subsequent C-O ring formation, thus offering a versatile method for the late-stage modification of peptides.
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- 2024
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20. Multilevel resistive switching in hydrothermally synthesized FeWO 4 thin film-based memristive device for non-volatile memory application.
- Author
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Patil AR, Dongale TD, Pedanekar RS, Sutar SS, Kamat RK, and Rajpure KY
- Abstract
The memristors offer significant advantages as a key element in non-volatile and brain-inspired neuromorphic systems because of their salient features such as remarkable endurance, ability to store multiple bits, fast operation speed, and extremely low energy usage. This work reports the resistive switching (RS) characteristics of the hydrothermally synthesized iron tungstate (FeWO
4 ) based thin film memristive device. The detailed physicochemical analysis was investigated using Rietveld's refinement, X-ray photoelectron spectroscopy (XPS), field emission scanning electron microscopy (FE-SEM), and transmission electron microscopy (TEM) techniques. The fabricated Ag/FWO/FTO memristive device exhibits bipolar resistive switching (BRS) behavior. In addition, the devices exhibit negative differential resistance (NDR) at both positive and negative bias. The charge-flux relation portrayed the non-ideal or memristive nature of the devices. The reliability in the RS process was analyzed in detail using Weibull distribution and time series analysis techniques. The device exhibits stable and multilevel endurance and retention characteristics which demonstrates the suitability of the device for the high-density non-volatile memory application. The current conduction of the device was dominated by Ohmic and trap controlled-space charge limited current (TC-SCLC) mechanisms and filamentary RS process responsible for the BRS in the device. In a nutshell, the present investigations reveal the potential use of the iron tungstate for the fabrication of memristive devices for the non-volatile memory application., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Inc. All rights reserved.)- Published
- 2024
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21. Hydrogen energy systems: Technologies, trends, and future prospects.
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Sadeq AM, Homod RZ, Hussein AK, Togun H, Mahmoodi A, Isleem HF, Patil AR, and Moghaddam AH
- Abstract
This review critically examines hydrogen energy systems, highlighting their capacity to transform the global energy framework and mitigate climate change. Hydrogen showcases a high energy density of 120 MJ/kg, providing a robust alternative to fossil fuels. Adoption at scale could decrease global CO
2 emissions by up to 830 million tonnes annually. Despite its potential, the expansion of hydrogen technology is curtailed by the inefficiency of current electrolysis methods and high production costs. Presently, electrolysis efficiencies range between 60 % and 80 %, with hydrogen production costs around $5 per kilogram. Strategic advancements are necessary to reduce these costs below $2 per kilogram and push efficiencies above 80 %. Additionally, hydrogen storage poses its own challenges, requiring conditions of up to 700 bar or temperatures below -253 °C. These storage conditions necessitate the development of advanced materials and infrastructure improvements. The findings of this study emphasize the need for comprehensive strategic planning and interdisciplinary efforts to maximize hydrogen's role as a sustainable energy source. Enhancing the economic viability and market integration of hydrogen will depend critically on overcoming these technological and infrastructural challenges, supported by robust regulatory frameworks. This comprehensive approach will ensure that hydrogen energy can significantly contribute to a sustainable and low-carbon future., Competing Interests: Declaration of competing interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Abdellatif M. Sadeq reports article publishing charges and writing assistance were provided by Qatar University. Abdellatif M. Sadeq reports a relationship with Qatar University that includes: board membership. Abdellatif M. Sadeq has patent pending to None. The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper. If there are other authors, they declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier B.V. All rights reserved.)- Published
- 2024
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22. Validation of effect of composite additive on optimized combustion characteristics of CI engine using AHP and GRA method.
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Patil AR, Patil SA, Patil R, Pawar AM, Chougule VN, and AboRas K
- Abstract
The primary focus of this study is the validation of composite additives with the help of additional optimization methods and the analysis of its effect on the combustion characteristics of compression ignition (CI) engines. Previous work on the identification of the correct multi additive combination by Taguchi and the TOPSIS optimization method has shown substantial improvements in the performance and emission characteristics of CI engines. The same work was extended using the GRA Optimization method with the Multi-Criteria Decision-Making (MCDM) optimization technique known as the Analytic Hierarchy Process (AHP) to validate the optimization results from the previous optimization work. Remarkably, all optimization methods yielded consistent results, pointing to the superiority of the composite additive sample 'D8EH6E4 hence supporting the outcome of previous work. Subsequent testing and comparison of this novel composite additive with baseline diesel fuel for combustion characteristics analysis demonstrated notable improvements in combustion parameters, including a 25 % reduction in the rate of pressure rise, an 18 % decrease in net heat release rate, and a 6 % decrease in mean gas temperature., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors.)
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- 2024
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23. Acute Q fever in individuals with acute febrile illness & exposure to farm animals: Clinical manifestations & diagnostic approaches.
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Sundar B, Shinde SV, Dongre SA, Chaudhari SP, Khan WA, Patil AR, Kurkure NV, Rawool DB, Naik BS, and Barbuddhe SB
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- Humans, Animals, Male, Adult, Female, Middle Aged, Animals, Domestic microbiology, Zoonoses microbiology, Zoonoses diagnosis, Zoonoses blood, Risk Factors, Enzyme-Linked Immunosorbent Assay, Immunoglobulin G blood, Immunoglobulin M blood, Adolescent, Livestock microbiology, Acute Disease, Q Fever diagnosis, Q Fever blood, Q Fever complications, Q Fever epidemiology, Coxiella burnetii pathogenicity, Coxiella burnetii isolation & purification, Fever microbiology, Fever diagnosis
- Abstract
Background & objectives Q fever is an important zoonotic disease affecting humans as well as animals. The objective of this study was to assess the burden of Q fever in individuals with acute febrile illness, particularly those in close contact with animals. Various diagnostic methods were also evaluated in addition to clinical examination analysis and associated risk factors. Methods Individuals presenting with acute febrile illness who had animal exposure were enrolled (n=92) in this study. Serum samples were tested using IgG and IgM phase 2 enzyme linked immunosorbent assay (ELISA) and immunofluorescence assay (IFA). The PCR targeting the com1 and IS1111 genes was performed on blood samples. PCR amplicons were sequenced and phylogenetically analysed. Demographic data, symptoms, and risk factors were collected through a structured questionnaire. Results Among individuals with acute febrile illness, 34.7 per cent (32 out of 92) were found to be infected with Coxiella burnetii. PCR exhibited the highest sensitivity among the diagnostic methods employed. The most common clinical manifestations included headache, chills, arthralgia, and fatigue. Individuals engaged in daily livestock-rearing activities were found to be at an increased risk of infection. Interpretation & conclusions Q fever is underdiagnosed due to its varied clinical presentations, diagnostic complexities, and lack of awareness. This study underscores the importance of regular screening for Q fever in individuals with acute febrile illness, particularly those with animal exposure. Early diagnosis and increased awareness among healthcare professionals are essential for the timely management and prevention of chronic complications associated with Q fever.
- Published
- 2024
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24. Physiotherapy Rehabilitation for Compressive Myelopathy in a 12-Year-Old Girl: A Case Study.
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Chavan N, Sharath HV, Varma TS, Patil AR, and Raghuveer R
- Abstract
Myelopathy manifests in childhood and can be clinically categorized according to the site of injury (which may result in spinal syndrome) or the source (which may be nontraumatic or widely traumatic). Nontraumatic myelopathy can be caused by inflammatory, infectious, nutritional, metabolic, or ischemic factors. It may also be associated with systemic illnesses such as demyelinating disease, multiple sclerosis, or systemic lupus. Nonintentional harm is a significant factor to take into account in instances of traumatic myelopathy, which can frequently be linked to additional injuries. MRI and CT radiography help identify compressive myelopathy. We present the case of a 12-year-old girl who is right-hand dominant. She was in good health six months ago but recently began experiencing weakness in both of her lower limbs. An MRI of the brain revealed basilar invagination with stenosis of the foramen magnum, causing compressive myelopathy at the cranio-vertebral junction. The patient was operated on, followed by physiotherapy rehabilitation to improve functional independence and quality of life., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2024, Chavan et al.)
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- 2024
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25. Modeling type 1 diabetes progression using machine learning and single-cell transcriptomic measurements in human islets.
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Patil AR, Schug J, Liu C, Lahori D, Descamps HC, Naji A, Kaestner KH, Faryabi RB, and Vahedi G
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- Humans, Autoantibodies immunology, Gene Expression Profiling methods, Male, Female, Insulin-Secreting Cells metabolism, Adult, Diabetes Mellitus, Type 1 genetics, Diabetes Mellitus, Type 1 immunology, Diabetes Mellitus, Type 1 pathology, Machine Learning, Single-Cell Analysis methods, Islets of Langerhans metabolism, Islets of Langerhans immunology, Transcriptome genetics, Disease Progression
- Abstract
Type 1 diabetes (T1D) is a chronic condition in which beta cells are destroyed by immune cells. Despite progress in immunotherapies that could delay T1D onset, early detection of autoimmunity remains challenging. Here, we evaluate the utility of machine learning for early prediction of T1D using single-cell analysis of islets. Using gradient-boosting algorithms, we model changes in gene expression of single cells from pancreatic tissues in T1D and non-diabetic organ donors. We assess if mathematical modeling could predict the likelihood of T1D development in non-diabetic autoantibody-positive donors. While most autoantibody-positive donors are predicted to be non-diabetic, select donors with unique gene signatures are classified as T1D. Our strategy also reveals a shared gene signature in distinct T1D-associated models across cell types, suggesting a common effect of the disease on transcriptional outputs of these cells. Our study establishes a precedent for using machine learning in early detection of T1D., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2024 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
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26. A Novel Physiotherapy Approach for Enhancing Mobility in a 53-Year-Old With Down Syndrome: A Case Report.
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Patil AR, Samal S, and Seth NH
- Abstract
Down syndrome (DS) is a genetic condition developing from a supplementary chromosome 21, referred to as trisomy 21. It ranks among the most prevalent developmental disabilities. People with DS often live inactive lifestyles, not meeting the weekly physical activity guidelines. With age, they face increased risks of cardiovascular disease and osteoporosis, as well as neurological and orthopedic concerns. Physiotherapy is especially important for improving balance, coordination, strength, and endurance in adults over the age of 50. Our approach consisted of a three-week regimen that included strengthening exercises based on the DeLorme strength training principle, balance exercises with perturbation and treadmill training, and coordination exercises with equilibrium and non-equilibrium movements. We evaluated outcomes using measures such as the Berg Balance Scale, Timed Up and Go test, and Functional Independence Measure, which were performed before and after the physiotherapy intervention. We present a case study of a 53-year-old woman to demonstrate the importance of physiotherapy in making lifestyle changes and improving strength, balance, and endurance, thereby improving overall quality of life through tailored interventions., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2024, Patil et al.)
- Published
- 2024
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27. Harnessing Neuroplasticity: A Case Report on Physiotherapy Rehabilitation for Millard-Gubler Syndrome.
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Patil AR, Samal S, and Sasun AR
- Abstract
This case report glances at the physiotherapy management and motor recovery outcomes of a 47-year-old female who had a pontine infarction complicated by Millard-Gubler syndrome. Pontine infarction is a stroke that occurs in the pons region of the brainstem, resulting in impaired blood flow and subsequent tissue damage. Millard-Gubler syndrome, a rare form of pontine infarction, is distinguished by ipsilateral abducens (sixth cranial nerve) and facial (seventh cranial nerve) nerve palsy, which cause horizontal gaze palsy and facial weakness, respectively. Other common symptoms include contralateral hemiparesis or hemiplegia, dysarthria, and hypertonia. In this case, the patient had nystagmus, dysarthria, hypertonia, decreased consciousness, and limited mobility. Physiotherapy interventions were used in a multidisciplinary approach to address these deficits, with a focus on improving gaze stability, reducing hypertonia, facilitating bed mobility, and improving respiratory function. The outcomes were evaluated using standardised measures such as the Brunnstrom staging for motor recovery, the Modified Ashworth Scale for hypertonia, and the Functional Independence Measure for functional status. This case demonstrates the critical role of physiotherapy in improving motor recovery and functional outcomes., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2024, Patil et al.)
- Published
- 2024
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28. A Comprehensive Physiotherapeutic Approach in a Young Patient With Necrotizing Pancreatitis With Bilateral Pleural Effusion: A Case Report.
- Author
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Patil AR and Lalwani L
- Abstract
Necrotizing pancreatitis represents a severe variant of acute pancreatitis characterized by the death of pancreatic tissue (necrosis). This condition commonly stems from inflammation and damage to the pancreas, leading to the development of areas of dead tissue within the organ. Pleural effusion, on the other hand, involves the accumulation of fluid within the pleural cavity. Typically, these effusions are of mild to moderate severity and tend to occur on the left side. In the following case report, we present a 25-year-old male who was diagnosed with necrotizing pancreatitis and bilateral pleural effusion. It is important to emphasize that cardiopulmonary physiotherapy plays a crucial role in managing pleural effusion. Such interventions, which encompass breathing exercises and thoracic expansion exercises, are pivotal for optimizing lung ventilation, enhancing oxygen levels, and preventing complications such as atelectasis and pneumonia. By boosting oxygenation and improving lung compliance, physiotherapy helps reduce the risk of respiratory problems and expedites the recovery process. This approach enables young individuals to regain their lung function and overall quality of life. In this particular case, the patient received medical management and pulmonary rehabilitation, resulting in a decrease in the Modified Medical Research Council Scale score and an improvement in the six-minute walk test (6 MWT), which subsequently enhanced their quality of life., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2024, Patil et al.)
- Published
- 2024
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29. Physiotherapy Rehabilitation in an Infected Non-union Shaft of Femur Repair Patient: A Case Report.
- Author
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Patil AR, Patil DS, and Jagzape MV
- Abstract
While definitions may vary, infected non-union is generally described as a condition where a fracture fails to heal due to infection, typically persisting for a duration of six to eight months. Infected non-unions occurring in the shaft of the femur are infrequent and typically result from severe open fractures with deep fragmentation and segmental bone loss or following internal fixation of a severely fragmented closed fracture. Some associated factors contributing to non-union include positive bacterial cultures from deep wounds, histological evidence of bone necrosis, exposed bone without a vascularized periosteum for more than six weeks, and the presence of purulent discharge. Osteomyelitis, stiffness in adjacent joints, smoking, loss of soft tissue resulting in multiple sinus tracts, osteopenia, and deformities leading to limb length discrepancies are all complicating factors that impact treatment and prognosis. Infected non-union of bones, although rare, presents a significant challenge for physiotherapists striving to provide appropriate treatment. The level of stabilization at the fracture site is the most critical factor influencing whether a fracture progresses to non-union or successfully heals. Infection, such as osteomyelitis, also contributes to the development of non-union. Additionally, issues like tissue atrophy, joint stiffness, and muscle contractures can further complicate the non-union of a bone, posing a considerable challenge for physical therapists in helping patients achieve their recovery goals. Top of form this case report reviews the case of a 35-year-old male who was reported to Acharya Vinoba Bhave Rural Hospital (AVBRH) with an infective non-union of the shaft of the femur fracture after two months of repair. This case report highlights the recovery of patients from post-operative complications like non-union, stiffness, and reduced range of motion through tailored physiotherapy rehabilitation and improved quality of life., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2023, Patil et al.)
- Published
- 2023
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30. Efficacy of Faradic Foot Baths and Short Foot Exercises in Symptomatic Flatfoot: A Review.
- Author
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Patil AR, Jawade S, Somaiya KJ, and Boob MA
- Abstract
Flatfoot is a common condition among adults, according to orthopedic experts. Flatfoot is defined in this document as a foot condition that occurs after the completion of skeletal growth and is characterized by either partial or complete reduction of the medial longitudinal arch (MLA). The purpose of this study was to evaluate the effects of short foot exercise (SFE) and faradic foot baths on people who have flat feet. This review focused on comprehensive original primary articles written in English. Numerous studies have been conducted in order to determine the effects of both interventions. The search yielded a wide range of papers, including editorials, review articles, freely available full texts, and abstracts. The results showed that both SFE and faradic foot baths effectively improved flat feet., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2023, Patil et al.)
- Published
- 2023
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31. Disease pathology signatures in a mouse model of Mucopolysaccharidosis type IIIB.
- Author
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Petrova R, Patil AR, Trinh V, McElroy KE, Bhakta M, Tien J, Wilson DS, Warren L, and Stratton JR
- Subjects
- Humans, Mice, Animals, Young Adult, Adult, Child, Acetylglucosaminidase genetics, Proteomics, Heparitin Sulfate, Hydrolases, Disease Models, Animal, Mucopolysaccharidosis III genetics
- Abstract
Mucopolysaccharidosis type IIIB (MPS IIIB) is a rare and devastating childhood-onset lysosomal storage disease caused by complete loss of function of the lysosomal hydrolase α-N-acetylglucosaminidase. The lack of functional enzyme in MPS IIIB patients leads to the progressive accumulation of heparan sulfate throughout the body and triggers a cascade of neuroinflammatory and other biochemical processes ultimately resulting in severe mental impairment and early death in adolescence or young adulthood. The low prevalence and severity of the disease has necessitated the use of animal models to improve our knowledge of the pathophysiology and for the development of therapeutic treatments. In this study, we took a systematic approach to characterizing a classical mouse model of MPS IIIB. Using a series of histological, biochemical, proteomic and behavioral assays, we tested MPS IIIB mice at two stages: during the pre-symptomatic and early symptomatic phases of disease development, in order to validate previously described phenotypes, explore new mechanisms of disease pathology and uncover biomarkers for MPS IIIB. Along with previous findings, this study helps provide a deeper understanding of the pathology landscape of this rare disease with high unmet medical need and serves as an important resource to the scientific community., (© 2023. Springer Nature Limited.)
- Published
- 2023
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32. Intrinsically disordered domain of transcription factor TCF-1 is required for T cell developmental fidelity.
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Goldman N, Chandra A, Johnson I, Sullivan MA, Patil AR, Vanderbeck A, Jay A, Zhou Y, Ferrari EK, Mayne L, Aguilan J, Xue HH, Faryabi RB, John Wherry E, Sidoli S, Maillard I, and Vahedi G
- Subjects
- Cell Differentiation genetics, Cell Lineage genetics, T Cell Transcription Factor 1 genetics, Chromatin metabolism, Transcription Factors metabolism, T-Lymphocytes metabolism
- Abstract
In development, pioneer transcription factors access silent chromatin to reveal lineage-specific gene programs. The structured DNA-binding domains of pioneer factors have been well characterized, but whether and how intrinsically disordered regions affect chromatin and control cell fate is unclear. Here, we report that deletion of an intrinsically disordered region of the pioneer factor TCF-1 (termed L1) leads to an early developmental block in T cells. The few T cells that develop from progenitors expressing TCF-1 lacking L1 exhibit lineage infidelity distinct from the lineage diversion of TCF-1-deficient cells. Mechanistically, L1 is required for activation of T cell genes and repression of GATA2-driven genes, normally reserved to the mast cell and dendritic cell lineages. Underlying this lineage diversion, L1 mediates binding of TCF-1 to its earliest target genes, which are subject to repression as T cells develop. These data suggest that the intrinsically disordered N terminus of TCF-1 maintains T cell lineage fidelity., (© 2023. The Author(s), under exclusive licence to Springer Nature America, Inc.)
- Published
- 2023
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33. Solvothermal synthesis of TiO 2 nanospheres for non-volatile memory and synaptic learning applications.
- Author
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Nikam AS, Kamble GU, Patil AR, Patil SB, Sheikh AD, Takaloo AV, Gaikwad PK, Kamat RK, Kim JH, and Dongale TD
- Abstract
In this study, we used the one-pot solvothermal method to synthesize the TiO
2 nanospheres (NSs) and used them for non-volatile memory and neuromorphic computing applications. Several analytical tools were used to understand the structural, optical, morphological, and compositional characteristics of synthesized TiO2 NSs. The tetragonal crystal structure of anatase TiO2 was formed, according to the Rietveld refined x-ray diffraction results. The NS morphology was confirmed by field emission scanning electron microscopy and transmission electron microscopy images. X-ray photoelectron spectroscopy was probed to understand the elemental composition and electronic states of the TiO2 NSs. We specifically looked at the impact of reaction time on the structural, optical, morphological, compositional, and resistive switching (RS) properties of TiO2 NSs. The fabricated devices (Ag/TiO2 NSs/FTO) exhibit bipolar RS behavior. The optimized RS device shows good endurance (5000 cycles) and memory retention (5000 s) properties. Moreover, fabricated devices showed double-valued charge-flux characteristics, whereas charge transport was caused by the Ohmic and space charge-limited current mechanisms. Additionally, the optimized device can mimic various synaptic characteristics including potentiation-depression, excitatory post-synaptic current, and paired-pulse facilitation., (© 2023 IOP Publishing Ltd.)- Published
- 2023
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34. Sprayed FeWO 4 thin film-based memristive device with negative differential resistance effect for non-volatile memory and synaptic learning applications.
- Author
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Patil AR, Dongale TD, Namade LD, Mohite SV, Kim Y, Sutar SS, Kamat RK, and Rajpure KY
- Abstract
Resistive switching (RS) memories have attracted great attention as promising solutions to next-generation non-volatile memories and computing technologies because of their simple device configuration, high on/off ratio, low power consumption, fast switching, long retention, and significant cyclic stability. In this work, uniform and adherent iron tungstate (FeWO
4 ) thin films were synthesized by the spray pyrolysis method with various precursor solution volumes, and these were tested as a switching layer for the fabrication of Ag/FWO/FTO memristive devices. The detailed structural investigation was done through various analytical and physio-chemical characterizations viz. X-ray diffraction (XRD) and its Rietveld refinement, Raman spectroscopy, and X-ray photoelectron spectroscopy (XPS) techniques. The results reveal the pure and single-phase FeWO4 compound thin film formation. Surface morphological study shows the spherical particle formation having a diameter in the range of 20 to 40 nm. The RS characteristics of the Ag/FWO/FTO memristive device demonstrate non-volatile memory characteristics with significant endurance and retention properties. Interestingly, the memory devices show stable and reproducible negative differential resistance (NDR) effects. The in-depth statistical analysis suggests the good operational uniformity of the device. Moreover, the switching voltages of the Ag/FWO/FTO memristive device were modeled using the time series analysis technique by utilizing Holt's Winter Exponential Smoothing (HWES) approach. Additionally, the device mimics bio-synaptic properties such as potentiation/depression, excitatory post-synaptic current (EPSC), and spike-timing-dependent plasticity (STDP) learning rules. For the present device, the space-charge-limited current (SCLC) and trap-controlled-SCLC effects dominated during positive and negative bias I-V characteristics, respectively. The RS mechanism dominated in the low resistance state (LRS), and the high resistance state (HRS) was explained based on the formation and rupture of conductive filament composed of Ag ions and oxygen vacancies. This work demonstrates the RS in the metal tungstate-based memristive devices and demonstrates a low-cost approach for fabricating memristive devices., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Inc. All rights reserved.)- Published
- 2023
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35. scViewer: An Interactive Single-Cell Gene Expression Visualization Tool.
- Author
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Patil AR, Kumar G, Zhou H, and Warren L
- Subjects
- Sequence Analysis, RNA methods, Databases, Factual, Gene Expression, Software, Single-Cell Analysis methods
- Abstract
Single-cell RNA sequencing (scRNA-seq) is an attractive technology for researchers to gain valuable insights into the cellular processes and cell type diversity present in all tissues. The data generated by the scRNA-seq experiment are high-dimensional and complex in nature. Several tools are now available to analyze the raw scRNA-seq data from public databases; however, simple and easy-to-explore single-cell gene expression visualization tools focusing on differential expression and co-expression are lacking. Here, we present scViewer, an interactive graphical user interface (GUI) R/Shiny application designed to facilitate the visualization of scRNA-seq gene expression data. With the processed Seurat RDS object as input, scViewer utilizes several statistical approaches to provide detailed information on the loaded scRNA-seq experiment and generates publication-ready plots. The major functionalities of scViewer include exploring cell-type-specific gene expression, co-expression analysis of two genes, and differential expression analysis with different biological conditions considering both cell-level and subject-level variations using negative binomial mixed modeling. We utilized a publicly available dataset (brain cells from a study of Alzheimer's disease to demonstrate the utility of our tool. scViewer can be downloaded from GitHub as a Shiny app with local installation. Overall, scViewer is a user-friendly application that will allow researchers to visualize and interpret the scRNA-seq data efficiently for multi-condition comparison by performing gene-level differential expression and co-expression analysis on the fly. Considering the functionalities of this Shiny app, scViewer can be a great resource for collaboration between bioinformaticians and wet lab scientists for faster data visualizations.
- Published
- 2023
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- View/download PDF
36. Single-cell expression profiling of islets generated by the Human Pancreas Analysis Program.
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Patil AR, Schug J, Naji A, Kaestner KH, Faryabi RB, and Vahedi G
- Subjects
- Humans, Pancreas metabolism, Islets of Langerhans metabolism
- Published
- 2023
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- View/download PDF
37. Circulation of a single hepatitis A virus genotype IIIA with two distinct clusters in different states of India.
- Author
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Lole KS, Thorat NC, Bhukya PL, Ramdasi AY, Hundekar SL, Patil AR, Shelkande SD, and Sapkal GN
- Subjects
- India epidemiology, Genotype, Phylogeny, Feces chemistry, Feces virology, Humans, RNA, Viral analysis, Hepatitis A Virus, Human classification, Hepatitis A Virus, Human genetics, Hepatitis A Virus, Human isolation & purification, Hepatitis A blood, Hepatitis A epidemiology, Hepatitis A virology
- Abstract
With the changing hepatitis A epidemiology in India, focal viral outbreaks are being reported from different parts of the country. This study presents Hepatitis A Virus (HAV) strain characterization (period 2009-2020) from 18 states of India. For that, blood and stool samples (n = 280) were screened for HAV RNA and sequences for 5'non-coding and VP3 regions were generated from positive samples (n = 68). Presence of a single IIIA genotype in all samples indicated IIIA being the only HAV genotype currently circulating in India. Interestingly, it was evident that these strains form two distinct groups suggesting independent evolution of these two clusters., (Copyright © 2022 Indian Association of Medical Microbiologists. Published by Elsevier B.V. All rights reserved.)
- Published
- 2023
- Full Text
- View/download PDF
38. Alternative splicing of the SUMO1/2/3 transcripts affects cellular SUMOylation and produces functionally distinct SUMO protein isoforms.
- Author
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Acuña ML, García-Morin A, Orozco-Sepúlveda R, Ontiveros C, Flores A, Diaz AV, Gutiérrez-Zubiate I, Patil AR, Alvarado LA, Roy S, Russell WK, and Rosas-Acosta G
- Subjects
- Humans, Small Ubiquitin-Related Modifier Proteins genetics, Small Ubiquitin-Related Modifier Proteins metabolism, Protein Isoforms genetics, Protein Isoforms metabolism, Genes, Regulator, SUMO-1 Protein genetics, SUMO-1 Protein metabolism, Alternative Splicing, Sumoylation
- Abstract
Substantial increases in the conjugation of the main human SUMO paralogs, SUMO1, SUMO2, and SUMO3, are observed upon exposure to different cellular stressors, and such increases are considered important to facilitate cell survival to stress. Despite their critical cellular role, little is known about how the levels of the SUMO modifiers are regulated in the cell, particularly as it relates to the changes observed upon stress. Here we characterize the contribution of alternative splicing towards regulating the expression of the main human SUMO paralogs under normalcy and three different stress conditions, heat-shock, cold-shock, and Influenza A Virus infection. Our data reveal that the normally spliced transcript variants are the predominant mature mRNAs produced from the SUMO genes and that the transcript coding for SUMO2 is by far the most abundant of all. We also provide evidence that alternatively spliced transcripts coding for protein isoforms of the prototypical SUMO proteins, which we refer to as the SUMO alphas, are also produced, and that their abundance and nuclear export are affected by stress in a stress- and cell-specific manner. Additionally, we provide evidence that the SUMO alphas are actively synthesized in the cell as their coding mRNAs are found associated with translating ribosomes. Finally, we provide evidence that the SUMO alphas are functionally different from their prototypical counterparts, with SUMO1α and SUMO2α being non-conjugatable to protein targets, SUMO3α being conjugatable but targeting a seemingly different subset of protein from those targeted by SUMO3, and all three SUMO alphas displaying different cellular distributions from those of the prototypical SUMOs. Thus, alternative splicing appears to be an important contributor to the regulation of the expression of the SUMO proteins and the cellular functions of the SUMOylation system., (© 2023. The Author(s).)
- Published
- 2023
- Full Text
- View/download PDF
39. Computational workflow and interactive analysis of single-cell expression profiling of islets generated by the Human Pancreas Analysis Program.
- Author
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Patil AR, Schug J, Naji A, Kaestner KH, Faryabi RB, and Vahedi G
- Abstract
Type 1 and Type 2 diabetes are distinct genetic diseases of the pancreas which are defined by the abnormal level of blood glucose. Understanding the initial molecular perturbations that occur during the pathogenesis of diabetes is of critical importance in understanding these disorders. The inability to biopsy the human pancreas of living donors hampers insights into early detection, as the majority of diabetes studies have been performed on peripheral leukocytes from the blood, which is not the site of pathogenesis. Therefore, efforts have been made by various teams including the Human Pancreas Analysis Program (HPAP) to collect pancreatic tissues from deceased organ donors with different clinical phenotypes. HPAP is designed to define the molecular pathogenesis of islet dysfunction by generating detailed datasets of functional, cellular, and molecular information in pancreatic tissues of clinically well-defined organ donors with Type 1 and Type 2 diabetes. Moreover, data generated by HPAP continously become available through a centralized database, PANC-DB, thus enabling the diabetes research community to access these multi-dimensional data prepublication. Here, we present the computational workflow for single-cell RNA-seq data analysis of 258,379 high-quality cells from the pancreatic islets of 67 human donors generated by HPAP, the largest existing scRNA-seq dataset of human pancreatic tissues. We report various computational steps including preprocessing, doublet removal, clustering and cell type annotation across single-cell RNA-seq data from islets of four distintct classes of organ donors, i.e. non-diabetic control, autoantibody positive but normoglycemic, Type 1 diabetic, and Type 2 diabetic individuals. Moreover, we present an interactive tool, called CellxGene developed by the Chan Zuckerberg initiative, to navigate these high-dimensional datasets. Our data and interactive tools provide a reliable reference for singlecell pancreatic islet biology studies, especially diabetes-related conditions.
- Published
- 2023
- Full Text
- View/download PDF
40. Imaging and Intervention in Internal Carotid Artery Pseudoaneurysm Secondary to Retropharyngeal Abscess.
- Author
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Ramanathan K, Patil AR, Narasimhan S, and Nair S
- Abstract
Vascular complications secondary to retropharyngeal abscess are rarely encountered in the post antibiotic era and include compression of internal carotid artery (ICA), infective arteritis and pseudoaneurysm formation. Post infectious ICA pseudoaneurysm formation is reported predominantly in the paediatric age group and rare in adults. We report a case of retropharyngeal abscess complicated by ICA pseudoaneurysm in an adult successfully managed by endovascular approach., Competing Interests: Conflict of interestThe authors declare that they have no conflict of interest., (© Association of Otolaryngologists of India 2020.)
- Published
- 2022
- Full Text
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41. Inhibitory effect of selected Indian honey on colon cancer cell growth by inducing apoptosis and targeting the β-catenin/Wnt pathway.
- Author
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Das N, Ray N, Patil AR, Saini SS, Waghmode B, Ghosh C, Patil SB, Patil SB, Mote CS, Saini S, Saraswat BL, Sircar D, and Roy P
- Subjects
- Animals, Apoptosis, Cell Proliferation, Rats, Wnt Signaling Pathway, beta Catenin, Colonic Neoplasms drug therapy, Honey analysis
- Abstract
Colon cancer is the most prevalent cause of death from cancer across the globe. Although chemotherapy drugs are predominantly used, their toxicity always remains a cause of concern. As an alternative to synthetic drugs, natural compounds or nutraceuticals are comparatively less toxic. Honey is widely used across different cultures as an alternative form of medicine. It represents a prominent source of plant-phenolic compounds and there is demonstrable evidence of its anti-oxidant and anti-microbial activities. The aim of the present work was to investigate the anti-proliferative effect of some Indian honeys and analyze their mechanism of action in colon cancer. In order to establish the composition-activity relationship, we evaluated the bioactive components present in selected honey samples by GC-MS and HPLC analysis. Indian honey samples showed a significant inhibitory impact on cell growth by restricting cell proliferation, causing apoptosis, and restricting the cell cycle in the G
2 / M phase specifically for colon cancer cells. The apoptotic activities, as imparted by the honey samples, were established by Annexin V/PI staining, real-time PCR, and immunoblot analyses. The treated cells showed increased expressions of p53 and caspases 3, 8, and 9, thus indicating the involvement of both extrinsic and intrinsic apoptotic pathways. The honey samples were also found to inhibit the β-catenin/Wnt pathway. In the next phase of the study, the efficacy of these honey samples was evaluated in colon carcinoma induced SD-rats. Overall, these findings demonstrated that selected Indian honeys could be established as effective nutraceuticals for the prevention as well as cure of colon cancer.- Published
- 2022
- Full Text
- View/download PDF
42. Dual Aneurysm Formation in an Occupationally Predisposed Male: Atypical Hypothenar Hammer Syndrome.
- Author
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Patil AR and Narasimhan S
- Abstract
Hypothenar hammer syndrome is typically described as a chronic repetitive injury to the ulnar artery at the level of hamulus of hamate and shows certain occupational predilection. Our case is an occupationally predisposed patient who had two aneurysm formations from the superficial palmar branch of ulnar artery and the digital branch, respectively, diagnosed and treated surgically. We call it an atypical hypothenar hammer syndrome as the arterial involvement was not typically at the level of hamate bone and only corresponded to the site of recurrent friction. This article also discusses the role of imaging and treatment options., Competing Interests: Conflicts of Interest There are no conflicts of interest., (Indian Radiological Association. This is an open access article published by Thieme under the terms of the Creative Commons Attribution-NonDerivative-NonCommercial License, permitting copying and reproduction so long as the original work is given appropriate credit. Contents may not be used for commercial purposes, or adapted, remixed, transformed or built upon. ( https://creativecommons.org/licenses/by-nc-nd/4.0/ ).)
- Published
- 2021
- Full Text
- View/download PDF
43. Radiological and cadaveric study of anatomical safe zone for transoral base of tongue surgery.
- Author
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Ibrahim A, Kumar S, Patil AR, Aishwarya JG, Shah AS, and Nair S
- Subjects
- Cadaver, Humans, Hyoid Bone, Tongue diagnostic imaging, Tongue surgery, Oral Surgical Procedures, Robotic Surgical Procedures methods
- Abstract
The aim of this study is to identify a surgical safe zone in base of tongue surgery. Fifteen Fresh frozen cadavers (30 head and neck regions) were included in the anatomical study. Twenty-two CT-angiogram (CTA) scans of neck were included in the radiological study. Surgical safe zone for base of tongue surgery was studied in cadavers and correlated the same in CTA. Depth of the lingual artery (LA) from the tongue surface and distance of origin of lingual artery from tip of greater cornu of hyoid bone was significantly different when comparing anatomical to radiological study (p < 0.005). On protruded position of tongue, lingual artery appeared more close to the tongue surface and was never encountered posterior to foramen caecum. Preoperative CTA evaluation would over-estimate the depth of LA putting the lingual artery at risk during resection. A surgical safe zone exists posterior to foramen caecum and towards the midline., (© 2020. Springer-Verlag London Ltd., part of Springer Nature.)
- Published
- 2021
- Full Text
- View/download PDF
44. Identification of Hub Genes in Different Stages of Colorectal Cancer through an Integrated Bioinformatics Approach.
- Author
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Patil AR, Leung MY, and Roy S
- Subjects
- Biomarkers, Tumor, Gene Expression Profiling, Gene Expression Regulation, Neoplastic, Gene Ontology, Humans, Colorectal Neoplasms genetics, Computational Biology
- Abstract
Colorectal cancer (CRC) is the third most common cancer that contributes to cancer-related morbidity. However, the differential expression of genes in different phases of CRC is largely unknown. Moreover, very little is known about the role of stress-survival pathways in CRC. We sought to discover the hub genes and identify their roles in several key pathways, including oxidative stress and apoptosis in the different stages of CRC. To identify the hub genes that may be involved in the different stages of CRC, gene expression datasets were obtained from the gene expression omnibus (GEO) database. The differentially expressed genes (DEGs) common among the different datasets for each group were obtained using the robust rank aggregation method. Then, gene enrichment analysis was carried out with Gene Ontology and Kyoto Encyclopedia of Genes and Genomes databases. Finally, the protein-protein interaction networks were constructed using the Cytoscape software. We identified 40 hub genes and performed enrichment analysis for each group. We also used the Oncomine database to identify the DEGs related to stress-survival and apoptosis pathways involved in different stages of CRC. In conclusion, the hub genes were found to be enriched in several key pathways, including the cell cycle and p53 signaling pathway. Some of the hub genes were also reported in the stress-survival and apoptosis pathways. The hub DEGs revealed from our study may be used as biomarkers and may explain CRC development and progression mechanisms.
- Published
- 2021
- Full Text
- View/download PDF
45. Role of Stress-Survival Pathways and Transcriptomic Alterations in Progression of Colorectal Cancer: A Health Disparities Perspective.
- Author
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Basnet U, Patil AR, Kulkarni A, and Roy S
- Subjects
- Carcinogenesis genetics, Humans, Oxidative Stress, Reactive Oxygen Species, Colorectal Neoplasms genetics, Transcriptome
- Abstract
Every year, more than a million individuals are diagnosed with colorectal cancer (CRC) across the world. Certain lifestyle and genetic factors are known to drive the high incidence and mortality rates in some groups of individuals. The presence of enormous amounts of reactive oxygen species is implicated for the on-set and carcinogenesis, and oxidant scavengers are thought to be important in CRC therapy. In this review, we focus on the ethnicity-based CRC disparities in the U.S., the negative effects of oxidative stress and apoptosis, and gene regulation in CRC carcinogenesis. We also highlight the use of antioxidants for CRC treatment, along with screening for certain regulatory genetic elements and oxidative stress indicators as potential biomarkers to determine the CRC risk and progression.
- Published
- 2021
- Full Text
- View/download PDF
46. Direct C-H bond halogenation and pseudohalogenation of hydrocarbons mediated by high-valent 3d metal-oxo species.
- Author
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Kannan N, Patil AR, and Sinha A
- Abstract
Late-stage direct functionalization of the C-H bond is synthetically desirable. Metalloenzymes having metal-oxo active sites are well known to selectively catalyze hydroxylation and halogenation reactions with high efficiency. This review highlights the recent developments in the field of direct C-H halogenation and pseudohalogenation reactions catalyzed by the functional models of metalloenzymes.
- Published
- 2020
- Full Text
- View/download PDF
47. Mind the gap: imaging spectrum of abdominal ventral hernia repair complications.
- Author
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Patil AR, Nandikoor S, Mohanty HS, Godhi S, and Bhat R
- Abstract
Ventral hernia repair with or without mesh placement is a commonly done procedure. Laparoscopic approach is more preferred than open in recent surgical practice. Complications occur as like any other abdominal surgeries and are dependent on multiple factors. Complications such as collections, adhesions, and related changes are non-specific. Specific complications related to hernia repair include recurrent hernia, mesh infection, mesh migration, and fistula formation. Post inguinal hernia repair chronic inguinal pain is gaining more attention with increasing use of image-guided nerve interventions for symptomatic management. Imaging plays a vital role in defining and delineating the type and extent of complications. Prior knowledge of the surgical indication and technique helps in better imaging interpretation of complications. This article describes the role of imaging in diagnosis of complications in general ventral hernia surgery setting.
- Published
- 2019
- Full Text
- View/download PDF
48. A network-based zoning for parallel whole-cell simulation.
- Author
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Das B, Patil AR, and Mitra P
- Subjects
- Cluster Analysis, Gene Ontology, Protein Interaction Mapping, Proteins, Algorithms, Computational Biology, Computer Simulation, Escherichia coli cytology
- Abstract
Motivation: In Computational Cell Biology, whole-cell modeling and simulation is an absolute requirement to analyze and explore the cell of an organism. Despite few individual efforts on modeling, the prime obstacle hindering its development and progress is its compute-intensive nature. Towards this end, little knowledge is available on how to reduce the enormous computational overhead and which computational systems will be of use., Results: In this article, we present a network-based zoning approach that could potentially be utilized in the parallelization of whole-cell simulations. Firstly, we construct the protein-protein interaction graph of the whole-cell of an organism using experimental data from various sources. Based on protein interaction information, we predict protein locality and allocate confidence score to the interactions accordingly. We then identify the modules of strictly localized interacting proteins by performing interaction graph clustering based on the confidence score of the interactions. By applying this method to Escherichia coli K12, we identified 188 spatially localized clusters. After a thorough Gene Ontology-based analysis, we proved that the clusters are also in functional proximity. We then conducted Principal Coordinates Analysis to predict the spatial distribution of the clusters in the simulation space. Our automated computational techniques can partition the entire simulation space (cell) into simulation sub-cells. Each of these sub-cells can be simulated on separate computing units of the High-Performance Computing (HPC) systems. We benchmarked our method using proteins. However, our method can be extended easily to add other cellular components like DNA, RNA and metabolites., Availability and Implementation: ., Supplementary Information: Supplementary data are available at Bioinformatics online.
- Published
- 2019
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49. Hydropic degeneration of leiomyoma in nongravid uterus: The "split fiber" sign on magnetic resonance imaging.
- Author
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Patil AR, Nandikoor S, and Padilu R
- Abstract
Extensive hydropic degeneration in uterine leiomyoma is a rare occurrence and is commonly reported in association with pregnancy. It is a close mimicker of malignancy due to rapid growth and atypical imaging appearances. Awareness of the imaging features helps in diagnosis, avoids unnecessary patient anxiety, and hence reassurance especially when encountered in pregnancy. We report two cases of extensive hydropic degeneration of leiomyoma in nonpregnant females with imaging and histopathology correlation. We also propose the "split fiber" sign as a useful magnetic resonance imaging feature for diagnosing this condition., Competing Interests: There are no conflicts of interest.
- Published
- 2018
- Full Text
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50. Case 248: Cystic Duodenal Dystrophy with Groove Pancreatitis.
- Author
-
Patil AR, Nandikoor S, Mallarajapatna G, and Shivakumar S
- Subjects
- Diagnosis, Differential, Fatal Outcome, Humans, Male, Middle Aged, Pancreaticoduodenectomy methods, Treatment Outcome, Cysts diagnostic imaging, Cysts surgery, Duodenitis diagnostic imaging, Duodenitis surgery, Pancreatitis, Chronic diagnostic imaging, Pancreatitis, Chronic surgery
- Abstract
History A 59-year-old man presented to the gastroenterology outpatient department with acute abdominal pain centered in the epigastrium. He had experienced similar episodes of abdominal pain in the past that had been treated with surgery. He reported multiple failed attempts at upper gastrointestinal endoscopy. Laboratory tests were performed at the time of admission and revealed a serum glutamic-oxaloacetic transaminase level of 9 U/L [0.15 μkat/L] (normal range, 5-40 U/L [0.08-0.67 μkat/L]), a serum glutamic-pyruvic transaminase level of 34 U/L [0.57 μkat/L] (normal range, 5-45 U/L [0.08-0.75 μkat/L]), a serum γ-glutamyltransferase level of 210 U/L (3.50 μkat/L) (normal range, 10-50 U/L [0.17-0.83 μkat/L]), a serum alkaline phosphatase level of 157 U/L (2.62 μkat/L) (normal range, 30-120 U/L [0.50-2.0 μkat/L]), a serum amylase level of 210 U/L (3.50 μkat/L) (normal range, 30-100 U/L [0.50-1.66 μkat/L]), a serum lipase level of 391 U/L (6.52 μkat/L) (normal range, 13-60 U/L [0.21-1.0 μkat/L]), an α-fetoprotein level of 3.81 ng/ mL (normal range, 0-9 ng/mL), a total protein level of 4.6 g/dL (normal range, 6.0-8.5 g/dL), and an albumin level of 2.6 g/dL (normal range, 3.5-5.2 g/dL). The rest of the laboratory data were unremarkable. The patient underwent erect abdominal radiography, contrast material-enhanced multidetector row computed tomography (CT) of the abdomen with 100 mL of iohexol (300 mg iodine per milliliter, Omnipaque; GE Healthcare, Shanghai, China) followed by combined positron emission tomography (PET) and CT (hereafter, PET/CT) with 6.9 mCi of fluorodeoxyglucose (FDG) and magnetic resonance (MR) imaging of the upper abdomen.
- Published
- 2017
- Full Text
- View/download PDF
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