94 results on '"Pérez-Ortega S"'
Search Results
2. AB1653-PARE LACK OF AWARENESS OF SYSTEMIC LUPUS ERYTHEMATOSUS AND ITS CONSEQUENCES ON A COHORT OF MODERATE AND SEVERE PATIENTS IN SPAIN: THE LUPUSVOICE STUDY
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Galindo Izquierdo, M., primary, Borrás Blasco, J., additional, Pérez Ortega, S., additional, Salman-Monte, T. C., additional, Vela Casasempere, P., additional, Rodríguez Almaraz, E., additional, Calvo Alén, J., additional, Alvaro-Gracia, J. M., additional, Barbado Ajo, J., additional, Rubio Renau, R., additional, Galvez-Fernandez, M., additional, Bahamontes Rosa, N., additional, Sánchez-Covisa Hernández, J., additional, and Solà Marsiñach, C., additional
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- 2024
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3. Perspectiva de género en la realización de la higiene en cuidados intensivos cardiológicos.
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Pérez-Ortega, S., Parellada-Vendrell, M., Querol, E., Prats, J., Venturas, M., and Zabalegui, A.
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- 2024
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4. Endless forms most frustrating: disentangling species boundaries in the Ramalina decipiens group (Lecanoromycetes, Ascomycota), with the description of six new species and a key to the group
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Blázquez, M., Pérez-Vargas, I., Garrido-Benavent, I., Villar-dePablo, M., Turégano, Y., Frías-López, C., Sánchez-Gracia, A., de los Ríos, A., Gasulla, F., Pérez-Ortega, S., Blázquez, M., Pérez-Vargas, I., Garrido-Benavent, I., Villar-dePablo, M., Turégano, Y., Frías-López, C., Sánchez-Gracia, A., de los Ríos, A., Gasulla, F., and Pérez-Ortega, S.
- Abstract
Oceanic islands have been recognized as natural laboratories in which to study a great variety of evolutionary processes. One such process is evolutionary radiations, the diversification of a single ancestor into a number of species that inhabit different environments and differ in the traits that allow them to exploit those environments. The factors that drive evolutionary radiations have been studied for decades in charismatic organisms such as birds or lizards, but are lacking in lichen-forming fungi, despite recent reports of some lineages showing diversification patterns congruent with radiation.Here we propose the Ramalina decipiens group as a model system in which to carry out such studies. This group is currently thought to be comprised of five saxicolous species, all of them endemic to the Macaronesian region (the Azores, Madeira, Selvagens, Canary, and Cape Verde islands). Three species are single-island endemics (a rare geographic distribution pattern in lichens), whereas two are widespread and show extreme morphological variation. The latter are suspected to harbor unrecognized species-level lineages.In order to use the Ramalina decipiens group as a model system, it is necessary to resolve the group's phylogeny and to clarify its species boundaries. In this study, we attempt to do so following an integrative taxonomy approach. We constructed a phylogenetic tree based on six molecular markers, four of which are newly developed, and generated competing species hypotheses based on molecular (species discovery strategies based on both single locus and multilocus datasets) and phenotypic data (unsupervised clustering algorithms based on morphology, secondary chemistry, and geographic origin).We found that taxonomic diversity in the Ramalina decipiens group has been highly underestimated in previous studies. In consequence, we describe six new species, most of them single-island endemics, and provide a key to the group. Phylogenetic relationships among species
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- 2024
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5. Comparative ecophysiology of three Placopsis species, pioneer lichens in recently exposed Chilean glacial forelands
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Raggio, J., Green, Thomas George Allan, Crittenden, P. D., Pintado Valverde, Ana, Vivas, M., Pérez-Ortega, S., Ríos, A. De los, García Sancho, Leopoldo, Raggio, J., Green, Thomas George Allan, Crittenden, P. D., Pintado Valverde, Ana, Vivas, M., Pérez-Ortega, S., Ríos, A. De los, and García Sancho, Leopoldo
- Abstract
Lichen species belonging to the genus Placopsis are early colonisers on snow free moraines of exposed land surfaces in the subantarctic region of Tierra de Fuego, South Chile. The physiological performance of three co-occurring species, P. pycnotheca, (terricolous), and P. perrugosa, and P. stenophylla (both saxicolous) was studied. All, possess green algal photobionts but have cyanobacteria in cephalodia. It was found that there was (i) a strong positive correlation between the acetylene reduction rate (AR) and the maximum photosynthetic rate (Amax), between the N content and the AR rate, and between the N and P contents, and (ii) the relationship between the CO2-exchange rates and the responses obtained in the laboratory reflected the ecology of these three lichens in the field. The results provide new information about the dynamics of some of the fastest growing crustose lichens. We hypothesize that the performance of these three species may have developed as a response to growing in an unstable environment that resulted from frequent glacial fluctuations., Ministerio de Ciencia e Innovación, Gobierno de España, Depto. de Farmacología, Farmacognosia y Botánica, Fac. de Farmacia, TRUE, pub
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- 2024
6. Endless forms most frustrating: disentangling species boundaries in the Ramalina decipiens group (Lecanoromycetes, Ascomycota), with the description of six new species and a key to the group
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Blázquez, M., primary, Pérez-Vargas, I., additional, Garrido-Benavent, I., additional, Villar-dePablo, M., additional, Turégano, Y., additional, Frías-López, C., additional, Sánchez-Gracia, A., additional, de los Ríos, A., additional, Gasulla, F., additional, and Pérez-Ortega, S., additional
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- 2024
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7. Effect of biological colonization on ceramic roofing tiles by lichens and a combined laser and biocide procedure for its removal
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Pena-Poza, J., Ascaso, C., Sanz, M., Pérez-Ortega, S., Oujja, M., Wierzchos, J., Souza-Egipsy, V., Cañamares, M.V., Urizal, M., Castillejo, M., and García-Heras, M.
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- 2018
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8. Influence of wavelength on the laser removal of lichens colonizing heritage stone
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Sanz, M., Oujja, M., Ascaso, C., Pérez-Ortega, S., Souza-Egipsy, V., Fort, R., de los Rios, A., Wierzchos, J., Cañamares, M.V., and Castillejo, M.
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- 2017
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9. In response to “Nursing methodology applied to a patient through structural intervention in cardiology”
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Parellada-Vendrell, M., primary, Prat-Masana, M., additional, and Pérez-Ortega, S., additional
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- 2023
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10. En respuesta a «Metodología enfermera aplicada a una paciente mediante intervencionismo estructural en cardiología»
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Parellada-Vendrell, M., primary, Prat-Masana, M., additional, and Pérez-Ortega, S., additional
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- 2023
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11. Mitral valve-in-valve implantation: A case report
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Parellada-Vendrell, M., primary, Prat-Masana, M., additional, and Pérez-Ortega, S., additional
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- 2023
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12. Valve in valve mitral: a propósito de un caso
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Parellada-Vendrell, M., primary, Prat-Masana, M., additional, and Pérez-Ortega, S., additional
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- 2023
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13. Nd-YAG laser irradiation damages to Verrucaria nigrescens
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Speranza, M., Sanz, M., Oujja, M., de los Rios, A., Wierzchos, J., Pérez-Ortega, S., Castillejo, M., and Ascaso, C.
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- 2013
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14. Erratum to: Diversity of Endosymbiotic Nostoc in Gunnera magellanica from Tierra del Fuego, Chile
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Fernández-Martínez, M. A., de los Ríos, A., Sancho, L. G., and Pérez-Ortega, S.
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- 2013
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15. Diversity of Endosymbiotic Nostoc in Gunnera magellanica (L) from Tierra del Fuego, Chile
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Fernández-Martínez, M. A., de los Ríos, A., Sancho, L. G., and Pérez-Ortega, S.
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- 2013
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16. Towards a more realistic picture of in situ biocide actions: Combining physiological and microscopy techniques
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Speranza, M., Wierzchos, J., De Los Rios, A., Perez-Ortega, S., Souza-Egipsy, V., and Ascaso, C.
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- 2012
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17. Differential effects of biocide treatments on saxicolous communities: Case study of the Segovia cathedral cloister (Spain)
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de los Ríos, A., Pérez-Ortega, S., Wierzchos, J., and Ascaso, C.
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- 2012
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18. Comparative ecophysiology of three Placopsis species, pioneer lichens in recently exposed Chilean glacial forelands
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Raggio, J., Green, T. G. A., Crittenden, P. D., Pintado, A., Vivas, M., Pérez-Ortega, S., De los Ríos, A., and Sancho, L. G.
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- 2012
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19. OP0292 SURVEY ON THE PERCEPTIONS AND EXPERIENCES OF SPANISH LUPUS PATIENTS. RESULTS ABOUT KNOWLEDGE OF THE DISEASE AND RELATIONSHIP TO DISEASE-FELUPUS SURVEY
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Fanlo, P., primary, Salman Monte, T. C., additional, Callejas-Rubio, J. L., additional, Galindo, M., additional, Robles Marhuenda, Á., additional, Pallares Ferreres, L., additional, Ángel Torres, M. J., additional, and Pérez Ortega, S., additional
- Published
- 2021
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20. DNA sequence data as types of fungal taxa
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Barreto, R.W., Gerlach, A.D.C.L., Grube, M., Harder, C.B., Jeppesen, T.S., Kirchmair, M., Kiyashko, A., Knapp, D.G., Knudsen, H., Knudsen, K., Knutsson, T., Kolařík, M., Kõljalg, U., Košuthová, A., Koszka, A., Kotiranta, H., Kotkova, V., Koukol, O., Kout, J., Kovács, G.M., Kříž, M., Kruys, Å., Kučera, V., Kudzma, L., Myllys, L., Nagy, I., Nagy, L.G., Neves, M.A., Niemelä, T., Nimis, P.L., Niveiro, N., Noordeloos, M.E., Nordin, A., Noumeur, S.R., Novozhilov, Y., Nuytinck, J., Ohenoja, E., Oliveira Fiuza, P., Orange, A., Ordynets, A., Ortiz-Santana, B., Pacheco, L., Pál-Fám, F., Palacio, M., Palice, Z., Papp, V., Pärtel, K., Pawlowska, J., Paz, A., Peintner, U., Pennycook, S., Liparini Pereira, O., Pérez Daniëls, P., Pérez-De-Gregorio Capella, M.À., Pérez del Amo, C.M., Pérez Gorjón, S., Pérez-Ortega, S., Pérez-Vargas, I., Rubio Casas, L., Rusevska, K., Saar, G., Saar, I., Salcedo, I., Salcedo Martínez, S.M., Salvador Montoya, C.A., Sánchez-Ramírez, S., Sandoval-Sierra, J.V., Tedebrand, J.-O., Tena Lahoz, R., Temina, M., Thell, A., Thines, M., Thor, G., Thüs, H., Tibell, L., Tibell, S., Timdal, E., Tkalčec, Z., Tønsberg, T., Trichies, G., Triebel, D., Tsurykau, A., Tulloss, R.E., Tuovinen, V., Ulloa Sosa, M., Urcelay, C., Valade, F., Valenzuela Garza, R., van den Boom, P., Van Vooren, N., Vasco-Palacios, A.M., Vauras, J., Velasco Santos, J.M., Vellinga, E., Verbeken, A., Vetlesen, P., Vizzini, A., Voglmayr, H., Volobuev, S., von Brackel, W., Barreto, R.W., Gerlach, A.D.C.L., Grube, M., Harder, C.B., Jeppesen, T.S., Kirchmair, M., Kiyashko, A., Knapp, D.G., Knudsen, H., Knudsen, K., Knutsson, T., Kolařík, M., Kõljalg, U., Košuthová, A., Koszka, A., Kotiranta, H., Kotkova, V., Koukol, O., Kout, J., Kovács, G.M., Kříž, M., Kruys, Å., Kučera, V., Kudzma, L., Myllys, L., Nagy, I., Nagy, L.G., Neves, M.A., Niemelä, T., Nimis, P.L., Niveiro, N., Noordeloos, M.E., Nordin, A., Noumeur, S.R., Novozhilov, Y., Nuytinck, J., Ohenoja, E., Oliveira Fiuza, P., Orange, A., Ordynets, A., Ortiz-Santana, B., Pacheco, L., Pál-Fám, F., Palacio, M., Palice, Z., Papp, V., Pärtel, K., Pawlowska, J., Paz, A., Peintner, U., Pennycook, S., Liparini Pereira, O., Pérez Daniëls, P., Pérez-De-Gregorio Capella, M.À., Pérez del Amo, C.M., Pérez Gorjón, S., Pérez-Ortega, S., Pérez-Vargas, I., Rubio Casas, L., Rusevska, K., Saar, G., Saar, I., Salcedo, I., Salcedo Martínez, S.M., Salvador Montoya, C.A., Sánchez-Ramírez, S., Sandoval-Sierra, J.V., Tedebrand, J.-O., Tena Lahoz, R., Temina, M., Thell, A., Thines, M., Thor, G., Thüs, H., Tibell, L., Tibell, S., Timdal, E., Tkalčec, Z., Tønsberg, T., Trichies, G., Triebel, D., Tsurykau, A., Tulloss, R.E., Tuovinen, V., Ulloa Sosa, M., Urcelay, C., Valade, F., Valenzuela Garza, R., van den Boom, P., Van Vooren, N., Vasco-Palacios, A.M., Vauras, J., Velasco Santos, J.M., Vellinga, E., Verbeken, A., Vetlesen, P., Vizzini, A., Voglmayr, H., Volobuev, S., and von Brackel, W.
- Abstract
Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.
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- 2018
21. Fv/Fm acclimation to the Mediterranean summer drought in two sympatric Lasallia species from the Iberian mountains
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VIVAS, M., primary, PÉREZ-ORTEGA, S., additional, PINTADO, A., additional, and SANCHO, L. G., additional
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- 2017
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22. Genetic diversity within lichen photobionts of the Lecanora varia group (Lichenes, Ascomycota)
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Pérez-Ortega, S., Søchting, Ulrik, and Printzen, C.
- Abstract
Lichens are symbiotic organisms, where a fungus–generally a member of the Ascomycota – and a photobiont – generally a green algae – interact closely in a widespread life form strategy. Recently, numerous studies have focused on the genetic diversity and phylogenetic relationships of the fungal partner of the symbiosis. Meanwhile, knowledge about photobiont diversity and the degree of photobiont selectivity of the fungus have been lacking behind. The Lecanora varia group is a set of species within the genus Lecanora defined by the presence of an amphitecial cortex along with the presence of usnic acid as secondary metabolite. We have focused on a small group of three species, namely L. varia, L. burgaziae, and L. densa which share very similar anatomical and morphological characters and an identical chemistry, with psoromic and 2-O-demethylpsoromic acids in addition to usnic acid. We have collected populations of these three species from various localities within their distributional range: L varia (Spain, Austria, Sweden, Czech Republic, western Siberia); L. burgaziae (Spain) and L. densa (North America and Spain). Subsequently, we sequenced the internal transcribed spacer (ITS) region of the nuclear ribosomal DNA to assess the degree of genetic variability within the phobobionts present. A high degree of variability was found among the photobionts of sampled specimens. Not only different lineages but also different photobiont species were detected. No correlation between lichen species and photobiont lineages was found. However, there is a high correlation between the geographical origin of samples and the photobiont lineages.
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- 2007
23. Branching System of the Mexican Hawthorn 'Tejocote' (Crataegus Spp.)
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Pérez-Ortega Sergio A., Méndez-Santiago Antonio H., Nieto-Angel Raúl, and Jankiewicz Leszek S.
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edible hawthorns. canopy architecture ,ramification habit ,inflorescence structure ,morphological diversity ,Plant culture ,SB1-1110 - Abstract
The architecture of the tejocote (pronounciation: tehocote) - a Mexican fruit trees is described. There is a great morphological diversity among the tejocote clones growing in Germplasm Bank of the Autonomic University of Chapingo, Mexico. The common character of all hawthorns in this bank is that the inflorescence axis dies after shedding the reproductive parts (flowers or fruits) but remains on the tree, and the growth continues from the bud situated below the dead part. The growth and ramification habit were described as long shoots showing marked apical dominance and as the complex of shoots showing week apical dominance. The non-pruned trees of tejocote clones used as fruit trees form strong natural crown. The architecture of it is similar to the “Troll’s model” of Hallé and Oldeman (1970). Metamorphosis and reiteration are relatively frequent. The inflorescence structure was described, as well as the types of thorns in clones, which have thorns. Tejocote hawthorn may probably be an interesting fruit tree for countries with warm climate and a long dry period. It is also well adapted to shallow calcareous soils.
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- 2013
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24. Valve in valvemitral: a propósito de un caso
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Parellada-Vendrell, M., Prat-Masana, M., and Pérez-Ortega, S.
- Abstract
El implante valve in valvemitral es una nueva herramienta terapéutica que ha surgido recientemente en el campo del intervencionismo estructural en cardiología para pacientes con disfunción bioprotésica por insuficiencia mitral severa y alto riesgo quirúrgico. El objetivo es elaborar un plan de cuidados enfermero individualizado destinado a una paciente que se somete a este procedimiento, siendo el primer caso en nuestro centro.
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- 2021
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25. Lichens and lichenicolous fungi of Sierra de San Lorenzo (La Rioja Community, Spain)
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Burgaz, A. R., Argüello, A., Atienza, V., Fernández-Brime, S., Fernández-Salegui, A. B., Figueras-Balague, G., García Otálora, M., Antonio Gómez-Bolea, Hawksworth, D. L., Hladun, N., Llimona, X., Llop, E., Marcos-Laso, B., Muñíz, D., Pérez-Llamazares, A., Paz-Bermúdez, G., Pérez-Ortega, S., Del Prado, R., Rodrigues, S. A., and Terrón, A.
26. Lack of awareness of systemic lupus erythematosus and its consequences in a cohort of moderate and severe patients in Spain: The LupusVoice study.
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Galindo Izquierdo M, Borrás Blasco J, Pérez Ortega S, Salman-Monte TC, Vela-Casasempere P, Rodríguez Almaraz E, Calvo-Alen J, Álvaro-Gracia Álvaro JM, Barbado Ajo MJ, Rubio Renau R, Galvez-Fernandez M, Bahamontes-Rosa N, Sánchez-Covisa Hernández J, and Solà Marsiñach C
- Subjects
- Humans, Spain, Female, Cross-Sectional Studies, Male, Adult, Middle Aged, Qualitative Research, Health Personnel psychology, Aged, Delayed Diagnosis, Young Adult, Awareness, Lupus Erythematosus, Systemic psychology, Lupus Erythematosus, Systemic diagnosis, Quality of Life, Health Knowledge, Attitudes, Practice, Severity of Illness Index
- Abstract
Background and Objectives: Systemic lupus erythematosus (SLE) is an autoimmune condition that can highly impact patients' quality of life (QoL). However, there is a lack of knowledge about SLE, affecting the general population and health care professionals (HCPs) alike. This lack of knowledge has negative implications for patients and the healthcare system, worsening prognosis, negatively impacting QoL, and increasing healthcare utilization. The aim of this paper is to draw attention, according to the perspective of the participants of this study, to the lack of awareness of SLE and its consequences in Spain, and to suggest improvements., Patients and Methods: This qualitative, descriptive, observational, multicenter, and cross-sectional study included 40 patients with moderate or severe SLE, recruited during their routine visits in six university hospitals in Spain. The study also included 11 caregivers and 9 HCPs. All participants were individually interviewed. Data from the interviews were coded and analyzed thematically by two anthropologists following a phenomenological perspective., Results: Our study identified a lack of disease awareness among primary care physicians, emergency medicine doctors, and other specialists treating SLE symptomatology. This led to diagnostic delays, which had a clinical and emotional impact on patients. Furthermore, symptom awareness was found to be context dependent. Differences in symptom awareness between HCPs and patients led to a mismatch between the severity evaluation made by doctors and patients. Some HCPs did not consider the limitations of the current severity evaluation of SLE, and therefore attributed symptoms potentially caused by SLE to the unfavorable socioeconomic conditions patients lived in. Finally, a lack of social awareness among friends, family members, and romantic partners led to lower social support, increased isolation, and negative physical and emotional impact for patients. Gender differences in the provision of support were identified., Conclusion: This study highlights the need to increase SLE awareness among patients, HCPs, and the broader public in order to improve patient QoL. Being aware of the clinical and emotional impact of such lack of awareness, as well as the role played by context on the patient experience of SLE, is a crucial step towards achieving this goal., Competing Interests: Declaration of conflicting interestsThe author(s) declared the following potential conflicts of interest with respect to the research, authorship, and/or publication of this article: RRR and CSM are employees of A Piece of Pie and have received research funding from AstraZeneca to conduct this study. JSH, MG, and NBR are employees of AstraZeneca. ERA has received honoraria from GSK. All other authors report no competing interests.
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- 2024
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27. Bacterial communities associated with an island radiation of lichen-forming fungi.
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Blázquez M, Ortiz-Álvarez R, Gasulla F, Pérez-Vargas I, and Pérez-Ortega S
- Subjects
- Phylogeny, Bacteria genetics, Fungi genetics, Lichens, Microbiota genetics
- Abstract
Evolutionary radiations are one of the most striking processes biologists have studied in islands. A radiation is often sparked by the appearance of ecological opportunity, which can originate in processes like trophic niche segregation or the evolution of key innovations. Another recently proposed mechanism is facilitation mediated by the bacterial communities associated with the radiating species. Here we explore the role of the bacterial communities in a radiation of lichen-forming fungi endemic to Macaronesia. Bacterial diversity was quantified by high throughput sequencing of the V1-V2 hyper-variable region of 172 specimens. We characterized the taxonomic and phylogenetic diversity of the bacterial communities associated with the different species, tested for compositional differences between these communities, carried out a functional prediction, explored the relative importance of different factors in bacterial community structure, searched for phylosymbiosis and tried to identify the origin of this pattern. The species of the radiation differed in the composition of their bacterial communities, which were mostly comprised of Alphaproteobacteria and Acidobacteriia, but not in the functionality of those communities. A phylosimbiotic pattern was detected, but it was probably caused by environmental filtering. These findings are congruent with the combined effect of secondary chemistry and mycobiont identity being the main driver of bacterial community structure. Altogether, our results suggest that the associated bacterial communities are not the radiation's main driver. There is one possible exception, however, a species that has an abnormally diverse core microbiome and whose bacterial communities could be subject to a specific environmental filter at the functional level., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Blázquez et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
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- 2024
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28. Myrmecia , Not Asterochloris , Is the Main Photobiont of Cladonia subturgida ( Cladoniaceae , Lecanoromycetes ).
- Author
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Pino-Bodas R, Blázquez M, de Los Ríos A, and Pérez-Ortega S
- Abstract
This study explores the diversity of photobionts associated with the Mediterranean lichen-forming fungus Cladonia subturgida . For this purpose, we sequenced the whole ITS rDNA region by Sanger using a metabarcoding method for ITS2. A total of 41 specimens from Greece, Italy, France, Portugal, and Spain were studied. Additionally, two specimens from Spain were used to generate four cultures. Our molecular studies showed that the genus Myrmecia is the main photobiont of C. subturgida throughout its geographic distribution. This result contrasts with previous studies, which indicated that the main photobiont for most Cladonia species is Asterochloris . The identity of Myrmecia was also confirmed by ultrastructural studies of photobionts within the lichen thalli and cultures. Photobiont cells showed a parietal chloroplast lacking a pyrenoid, which characterizes the species in this genus. Phylogenetic analyses indicate hidden diversity within this genus. The results of amplicon sequencing showed the presence of multiple ASVs in 58.3% of the specimens studied.
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- 2023
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29. Emotional response of critically-ill cardiac patients during hygiene procedures in intensive care: a prospective and descriptive study.
- Author
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Pérez-Ortega S, Vallés EQ, Barrera JP, Venturas Nieto M, and Zabalegui A
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- Male, Humans, Middle Aged, Aged, Aged, 80 and over, Female, Prospective Studies, Critical Care, Intensive Care Units, Emotions, Critical Illness therapy, Hygiene
- Abstract
Objective: to analyze the emotional response of critically-ill conscious patients during daily hygiene procedures in a Cardiology Intensive Care Unit and to compare it based on the existence of previous experiences or not., Method: a prospective and descriptive study. A 30-item ad hoc survey based on the first-day hygiene procedures was applied to 148 patients. Questions are asked about the feelings during the hygiene procedures and about positive and negative aspects of the experience. The patients are compared based on whether they had been already subjected to hygiene procedures or not., Results: 67.6% were men and their mean age was 67±15 years old; 45.9% proved to be satisfied, 27% felt embarrassment and 86.3% were grateful to the professionals for talking to them during the hygiene procedures. 33.1% of the patients had never been subjected to hygiene procedures in bed, were significantly younger and single, and presented a lower cleanliness sensation. 32% stated that they would like for a family member to collaborate in the hygiene procedures., Conclusion: the patients do not feel that their intimacy is invaded when they are subjected to hygiene procedures and appreciate communication with the health personnel while this care is provided. Those who had never been subjected to hygiene procedures in bed are younger, feel more embarrassed and are more disturbed by interruptions, in addition to being more aware of them.
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- 2023
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30. Innovative approaches to accurately assess the effectiveness of biocide-based treatments to fight biodeterioration of Cultural Heritage monuments.
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Villar-dePablo M, Ascaso C, Rodríguez-Pérez E, Urizal M, Wierzchos J, Pérez-Ortega S, and de Los Ríos A
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- Microscopy, Disinfectants pharmacology, Cyanobacteria, Ascomycota
- Abstract
The development of diagnostic methods to accurately assess the effects of treatments on lithobiont colonization remains a challenge for the conservation of Cultural Heritage monuments. In this study, we tested the efficacy of biocide-based treatments on microbial colonization of a dolostone quarry, in the short and long-term, using a dual analytical strategy. We applied a metabarcoding approach to characterize fungal and bacterial communities over time, integrated with microscopy techniques to analyze the interactions of microorganisms with the substrate and evaluate the effectiveness. These communities were dominated by the bacterial phyla Actinobacteriota, Proteobacteria and Cyanobacteria, and the fungal order Verrucariales, which include taxa previously reported as biodeteriogenic agents and observed here associated with biodeterioration processes. Following the treatments, changes over time in the abundance profiles depend on taxa. While Cyanobacteriales, Cytophagales and Verrucariales decreased in abundance, other groups, such as Solirubrobacteriales, Thermomicrobiales and Pleosporales increased. These patterns could be related not only to the specific effects of the biocide on the different taxa, but also to different recolonization abilities of those organisms. The different susceptibility to treatments could be associated with the inherent cellular properties of different taxa, but differences in biocide penetration to endolithic microhabitats could be involved. Our results demonstrate the importance of both removing epilithic colonization and applying biocides to act against endolithic forms. Recolonization processes could also explain some of the taxon-dependent responses, especially in the long-term. Taxa showing resistance, and those benefiting from nutrient accumulation in the form of cellular debris following treatments, may have an advantage in colonizing treated areas, pointing to the need for long-term monitoring of a wide range of taxa. This study highlights the potential utility of combining metabarcoding and microscopy to analyze the effects of treatments and design appropriate strategies to combat biodeterioration and establish preventive conservation protocols., Competing Interests: Declaration of competing interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Asuncion de los Rios reports financial support was provided by Community of Madrid., (Copyright © 2023 The Authors. Published by Elsevier B.V. All rights reserved.)
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- 2023
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31. Ocean crossers: A tale of disjunctions and speciation in the dwarf-fruticose Lichina (lichenized Ascomycota).
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Garrido-Benavent I, de Los Ríos A, Núñez-Zapata J, Ortiz-Álvarez R, Schultz M, and Pérez-Ortega S
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- Phylogeny, Fossils, Oceans and Seas, Phylogeography, Ascomycota genetics, Lichens genetics
- Abstract
Lichens thrive in rocky coastal areas in temperate and cold regions of both hemispheres. Species of the genus Lichina, which form characteristic black fruiting thalli associated with cyanobacteria, often create distinguishable bands in the intertidal and supralittoral zones. The present study uses a comprehensive specimen dataset and four gene loci to (1) delineate and discuss species boundaries in this genus, (2) assess evolutionary relationships among species, and (3) infer the most likely causes of their current geographic distribution in the Northern and Southern hemispheres. A dated phylogeny describes the time frame in which extant disjunctions of species and populations were established. The results showed that the genus is integrated by four species, with Lichina pygmaea, L. confinis and the newly described L. canariensis from rocky seashores in the Canary Islands, occurring in the Northern Hemisphere, whereas L. intermedia is restricted to the Southern Hemisphere. Lichina intermedia hosted a much higher intraspecific genetic diversity than the other species, with subclades interpreted as species-level lineages by the different species delimitation approaches. However, a conservative taxonomic approach was adopted. This species showed a striking disjunct distribution between Australasia and southern South America. The timing for the observed interspecific and intraspecific divergences and population disjunctions postdated continental plate movements, suggesting that long-distance dispersal across body waters in the two hemispheres played a major role in shaping the current species distributions. Such ocean crossings were, as in L. canariensis, followed by speciation. New substitution rates for the nrITS of the genus Lichina were inferred using a tree spanning the major Ascomycota lineages calibrated using fossils. In conclusion, this work lays the foundation for a better understanding of the evolution through time and space of maritime lichens., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.)
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- 2023
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32. Clinical Debriefing in Cardiology Teams: A National Survey in Spain.
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Laurens Acevedo M, Diaz-Navarro C, Leon-Castelao E, Pérez Ortega S, and Bañeras Rius J
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- Clinical Competence, Humans, Patient Care Team, Patient Safety, Spain, Surveys and Questionnaires, Cardiology
- Abstract
Background: Clinical debriefing (CD) improves patient safety and builds team resilience., Purpose: We describe the current use of CD by multiprofessional Spanish cardiology team members., Methods: A self-administered survey exploring 31 items was disseminated online in October 2020. A comparison was made between respondents that who experience in CD with inexperienced respondents. Inferential analysis was done using Pearson's χ 2 test., Results: Out of 167 valid responses, 45.5% had been completed by cardiology nurses. One-third of the respondents had experience in CD. Most common situations preceding CD were those with negative outcomes (81.8%). Time constraint was the most commonly reported barrier (76.3%); however, it was significantly less than the expectation of inexperienced respondents (92%, P < .01). Overall, only 28.2% reported self-confidence in their skills to lead a CD., Conclusions: There is a necessity in Spanish cardiology teams to receive training in CD and embed it in their daily practice., Competing Interests: The authors declare no conflicts of interest., (Copyright © 2022 Wolters Kluwer Health, Inc. All rights reserved.)
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- 2022
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33. The Role of Photobionts as Drivers of Diversification in an Island Radiation of Lichen-Forming Fungi.
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Blázquez M, Hernández-Moreno LS, Gasulla F, Pérez-Vargas I, and Pérez-Ortega S
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Speciation in oceanic islands has attracted the interest of scientists since the 19th century. One of the most striking evolutionary phenomena that can be studied in islands is adaptive radiation, that is, when a lineage gives rise to different species by means of ecological speciation. Some of the best-known examples of adaptive radiation are charismatic organisms like the Darwin finches of the Galapagos and the cichlid fishes of the great African lakes. In these and many other examples, a segregation of the trophic niche has been shown to be an important diversification driver. Radiations are known in other groups of organisms, such as lichen-forming fungi. However, very few studies have investigated their adaptive nature, and none have focused on the trophic niche. In this study, we explore the role of the trophic niche in a putative radiation of endemic species from the Macaronesian Region, the Ramalina decipiens group. The photobiont diversity was studied by Illumina MiSeq sequencing of the ITS2 region of 197 specimens spanning the phylogenetic breadth and geographic range of the group. A total of 66 amplicon sequence variants belonging to the four main clades of the algal genus Trebouxia were found. Approximately half of the examined thalli showed algal coexistence, but in most of them, a single main photobiont amounted to more than 90% of the reads. However, there were no significant differences in photobiont identity and in the abundance of ITS2 reads across the species of the group. We conclude that a segregation of the trophic niche has not occurred in the R. decipiens radiation., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Blázquez, Hernández-Moreno, Gasulla, Pérez-Vargas and Pérez-Ortega.)
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- 2022
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34. Verrucoccum (Dothideomycetes, Dictyosporiaceae), a new genus of lichenicolous fungi on Lobaria s. lat. for the Dothidea hymeniicola species complex.
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Atienza V, Hawksworth DL, and Pérez-Ortega S
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- British Columbia, Central America, DNA, Ribosomal genetics, Asia, Eastern, Phylogeny
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Two lichenicolous fungi, one growing on the thallus of Lobaria pulmonaria in the United Kingdom (Scotland) and the other in apothecia of Lobaria linita and L. oregana in northwestern North America (Alaska and British Columbia) and northeast Asia (Russian Far East, Khabarovsk Krai), show similarities to the species originally described as Dothidea hymeniicola (later transferred to Polycoccum s. lat and Endococcus ) from a Lobaria s. lat. species in Central America. Critical morphological comparison showed that, despite the superficial resemblance between Alaskan, Canadian, Russian, and Scottish collections and the holotype of Dothidea hymeniicola , they can be distinguished by detailed microscopic analyses. Using three molecular markers, sequences of the nuc 18S, 28S, and internal transcribed spacer (ITS) rDNA regions of the recent Scottish and Alaskan collections were obtained. Phylogenetic analyses confirmed separation of the species and revealed them as a new lineage in Pleosporales, for which the new generic name Verrucoccum is introduced for the three species: V. coppinsii , sp. nov., V. hymeniicola , comb. nov. (syn. Dothidea hymeniicola ), and V. spribillei , sp. nov.
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- 2021
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35. Lived Experiences of Hospitalized COVID-19 Patients: A Qualitative Study.
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Venturas M, Prats J, Querol E, Zabalegui A, Fabrellas N, Rivera P, Casafont C, Cuzco C, Frías CE, Olivé MC, and Pérez-Ortega S
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- Female, Humans, Intensive Care Units, Middle Aged, Qualitative Research, SARS-CoV-2, COVID-19, Pandemics
- Abstract
The COVID-19 pandemic has resulted in many hospitalized patients and deaths worldwide. Coronavirus patients were isolated from their relatives and visits were banned to prevent contagion. This has brought about a significant change in deeply rooted care habits in Mediterranean and Latin American countries where the family normally accompanies vulnerable hospitalized patients. The aim of this qualitative study was to examine the hospitalization experience of COVID-19 patients and their family members. A phenomenological qualitative approach was used. Data collection included inductive, in-depth interviews with 11 COVID-19 hospitalized patients. The mean age of patients was 55.4 years and 45% were female. Nearly 50% required Intensive Care Unit (ICU) admission. Ten meaningful statements were identified and grouped in three themes: Positive and negative aspects of the care provided, the patient's perspective, and perception of the experience of the disease. In conclusion, COVID-19 patients, aware of the severity of the pandemic, were very adaptable to the situation and had full confidence in health professionals. Patient isolation was perceived as necessary. Technology has helped to maintain communication between patients and relatives.
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- 2021
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36. Neogene speciation and Pleistocene expansion of the genus Pseudephebe (Parmeliaceae, lichenized fungi) involving multiple colonizations of Antarctica.
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Garrido-Benavent I, Pérez-Ortega S, de Los Ríos A, Mayrhofer H, and Fernández-Mendoza F
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- Antarctic Regions, Ecosystem, Haplotypes genetics, Phylogeny, Phylogeography, Polymorphism, Genetic, Sequence Analysis, DNA, Species Specificity, Time Factors, Genetic Speciation, Lichens classification, Parmeliaceae classification
- Abstract
Widespread geographic distributions in lichens have been usually explained by the high dispersal capacity of their tiny diaspores. However, recent phylogenetic surveys have challenged this assumption and provided compelling evidence for cryptic speciation and more restricted distribution ranges in diverse lineages of lichen-forming fungi. To evaluate these scenarios, we focus on the fungal genus Pseudephebe (Parmeliaceae) which includes amphitropical species, a distribution pattern whose origin has been a matter of debate since first recognized in the nineteenth century. In our study, a six-locus dataset and a broad specimen sampling covering almost all Earth's continents is used to investigate species delimitation in Pseudephebe. Population structure, gene flow and dating analyses, as well as genealogical reconstruction methods, are employed to disentangle the most plausible transcontinental migration routes, and estimate the timing of the origin of the amphitropical distribution and the Antarctic populations. Our results demonstrate the existence of three partly admixed phylogenetic species that diverged between the Miocene and Pliocene, and whose Quaternary distribution has been strongly driven by glacial cycles. Pseudephebe minuscula is the only species showing an amphitropical distribution, with populations in Antarctica, whereas the restricted distribution of P. pubescens and an undescribed Alaskan species might reflect the survival of these species in European and North American refugia. Our microevolutionary analyses suggest a Northern Hemisphere origin for P. minuscula, which could have dispersed into the Southern Hemisphere directly and/or through "mountain-hopping" during the Pleistocene. The Antarctic populations of this species are sorted into two genetic clusters: populations of the Antarctic Peninsula were grouped together with South American ones, and the Antarctic Continental populations formed a second cluster with Bolivian and Svalbard populations. Therefore, our data strongly suggest that the current distribution of P. minuscula in Antarctica is the outcome of multiple, recent colonizations. In conclusion, our results stress the need for integrating species delimitation and population analyses to properly approach historical biogeography in lichen-forming fungi., (Copyright © 2020 Elsevier Inc. All rights reserved.)
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- 2021
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37. Experiences of nursing students as healthcare aid during the COVID-19 pandemic in Spain: A phemonenological research study.
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Casafont C, Fabrellas N, Rivera P, Olivé-Ferrer MC, Querol E, Venturas M, Prats J, Cuzco C, Frías CE, Pérez-Ortega S, and Zabalegui A
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- Adult, Emotions, Female, Humans, Interviews as Topic, Qualitative Research, Spain, Young Adult, Adaptation, Psychological, COVID-19, Nursing Assistants, Stress, Psychological psychology, Students, Nursing psychology
- Abstract
Background: The coronavirus disease (COVID-19) pandemic has caused a worldwide health and social crisis directly impacting the healthcare system. Hospitals had to rearrange its structure to meet clinical needs. Spain has been experiencing a shortage of working nurses. Student nurses in their last year at university were employed to help the National Health System respond to the COVID-19 crisis., Aim: The aim of this study was to explore and understand the experience of nursing students' roles as healthcare aid in responding to the COVID-19 crisis., Methods: A qualitative phenomenology design was used to explore undergraduate nursing students' perceptions of their experiences as HAs during the COVID-19 outbreak. Open face-to-face interviews were conducted to nursing students (n = 10) in May 2020. Data was analyzed using the hermeneutic interpretative approach., Results: All participants were women aged between 21 and 25 years. Seven main themes emerged: learning, ambivalent emotions and adaptation were classified at a personal level; teamwork, patient communication, and unclear care processes were categorized under hospital structure; and coping mechanisms were part of external factors., Conclusions: Orientation, follow-up, and emotional support in crisis situations are key to unexperienced healthcare workers overcoming stressful emotions. Previous academic education and training may help novice future nurses feel more confident about their tasks and responsibilities as well as improve patient outcomes, resource management, and staff safety., (Copyright © 2020 Elsevier Ltd. All rights reserved.)
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- 2021
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38. Resilience and Emotional Support in Health Care Professionals During the COVID-19 Pandemic.
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Frias CE, Cuzco C, Martín CF, Pérez-Ortega S, Triviño López JA, and Lombraña M
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- Burnout, Professional nursing, Burnout, Professional prevention & control, Burnout, Professional psychology, COVID-19, Humans, Interdisciplinary Communication, Intersectoral Collaboration, Pandemics, Patient Care Team, Spain, Coronavirus Infections nursing, Coronavirus Infections psychology, Pneumonia, Viral nursing, Pneumonia, Viral psychology, Psychiatric Nursing, Psychological Distress, Resilience, Psychological, Social Support
- Published
- 2020
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39. Lichens and associated fungi from Glacier Bay National Park, Alaska.
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Spribille T, Fryday AM, Pérez-Ortega S, Svensson M, Tønsberg T, Ekman S, Holien H, Resl P, Schneider K, Stabentheiner E, Thüs H, Vondrák J, and Sharman L
- Abstract
Lichens are widely acknowledged to be a key component of high latitude ecosystems. However, the time investment needed for full inventories and the lack of taxonomic identification resources for crustose lichen and lichenicolous fungal diversity have hampered efforts to fully gauge the depth of species richness in these ecosystems. Using a combination of classical field inventory and extensive deployment of chemical and molecular analysis, we assessed the diversity of lichens and associated fungi in Glacier Bay National Park, Alaska (USA), a mixed landscape of coastal boreal rainforest and early successional low elevation habitats deglaciated after the Little Ice Age. We collected nearly 5000 specimens and found a total of 947 taxa, including 831 taxa of lichen-forming and 96 taxa of lichenicolous fungi together with 20 taxa of saprotrophic fungi typically included in lichen studies. A total of 98 species (10.3% of those detected) could not be assigned to known species and of those, two genera and 27 species are described here as new to science: Atrophysma cyanomelanos gen. et sp. nov., Bacidina circumpulla , Biatora marmorea , Carneothele sphagnicola gen. et sp. nov., Cirrenalia lichenicola , Corticifraga nephromatis , Fuscidea muskeg , Fuscopannaria dillmaniae , Halecania athallina , Hydropunctaria alaskana , Lambiella aliphatica , Lecania hydrophobica , Lecanora viridipruinosa , Lecidea griseomarginata , L. streveleri , Miriquidica gyrizans , Niesslia peltigerae , Ochrolechia cooperi , Placynthium glaciale , Porpidia seakensis , Rhizocarpon haidense , Sagiolechia phaeospora , Sclerococcum fissurinae , Spilonema maritimum , Thelocarpon immersum , Toensbergia blastidiata and Xenonectriella nephromatis . An additional 71 'known unknown' species are cursorily described. Four new combinations are made: Lepra subvelata (G. K. Merr.) T. Sprib., Ochrolechia minuta (Degel.) T. Sprib., Steineropsis laceratula (Hue) T. Sprib. & Ekman and Toensbergia geminipara (Th. Fr.) T. Sprib. & Resl. Thirty-eight taxa are new to North America and 93 additional taxa new to Alaska. We use four to eight DNA loci to validate the placement of ten of the new species in the orders Baeomycetales , Ostropales , Lecanorales , Peltigerales , Pertusariales and the broader class Lecanoromycetes with maximum likelihood analyses. We present a total of 280 new fungal DNA sequences. The lichen inventory from Glacier Bay National Park represents the second largest number of lichens and associated fungi documented from an area of comparable size and the largest to date in North America. Coming from almost 60°N, these results again underline the potential for high lichen diversity in high latitude ecosystems., (© British Lichen Society 2020.)
- Published
- 2020
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40. Differential Colonization and Succession of Microbial Communities in Rock and Soil Substrates on a Maritime Antarctic Glacier Forefield.
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Garrido-Benavent I, Pérez-Ortega S, Durán J, Ascaso C, Pointing SB, Rodríguez-Cielos R, Navarro F, and de Los Ríos A
- Abstract
Glacier forefields provide a unique chronosequence to assess microbial or plant colonization and ecological succession on previously uncolonized substrates. Patterns of microbial succession in soils of alpine and subpolar glacier forefields are well documented but those affecting high polar systems, including moraine rocks, remain largely unexplored. In this study, we examine succession patterns in pioneering bacterial, fungal and algal communities developing on moraine rocks and soil at the Hurd Glacier forefield (Livingston Island, Antarctica). Over time, changes were produced in the microbial community structure of rocks and soils (ice-free for different lengths of time), which differed between both substrates across the entire chronosequence, especially for bacteria and fungi. In addition, fungal and bacterial communities showed more compositional consistency in soils than rocks, suggesting community assembly in each niche could be controlled by processes operating at different temporal and spatial scales. Microscopy revealed a patchy distribution of epilithic and endolithic lithobionts, and increasing endolithic colonization and microbial community complexity along the chronosequence. We conclude that, within relatively short time intervals, primary succession processes at polar latitudes involve significant and distinct changes in edaphic and lithic microbial communities associated with soil development and cryptogamic colonization., (Copyright © 2020 Garrido-Benavent, Pérez-Ortega, Durán, Ascaso, Pointing, Rodríguez-Cielos, Navarro and de los Ríos.)
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- 2020
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41. Symbiosis at its limits: ecophysiological consequences of lichenization in the genus Prasiola in Antarctica.
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Fernández-Marín B, López-Pozo M, Perera-Castro AV, Arzac MI, Sáenz-Ceniceros A, Colesie C, De Los Ríos A, Sancho LG, Pintado A, Laza JM, Pérez-Ortega S, and García-Plazaola JI
- Subjects
- Antarctic Regions, Ecosystem, Symbiosis, Chlorophyta, Lichens
- Abstract
Background and Aims: Lichens represent a symbiotic relationship between at least one fungal and one photosynthetic partner. The association between the lichen-forming fungus Mastodia tessellata (Verrucariaceae) and different species of Prasiola (Trebouxiophyceae) has an amphipolar distribution and represents a unique case study for the understanding of lichen symbiosis because of the macroalgal nature of the photobiont, the flexibility of the symbiotic interaction and the co-existence of free-living and lichenized forms in the same microenvironment. In this context, we aimed to (1) characterize the photosynthetic performance of co-occurring populations of free-living and lichenized Prasiola and (2) assess the effect of the symbiosis on water relations in Prasiola, including its tolerance of desiccation and its survival and performance under sub-zero temperatures., Methods: Photochemical responses to irradiance, desiccation and freezing temperature and pressure-volume curves of co-existing free-living and lichenized Prasiola thalli were measured in situ in Livingston Island (Maritime Antarctica). Analyses of photosynthetic pigment, glass transition and ice nucleation temperatures, surface hydrophobicity extent and molecular analyses were conducted in the laboratory., Key Results: Free-living and lichenized forms of Prasiola were identified as two different species: P. crispa and Prasiola sp., respectively. While lichenization appears to have no effect on the photochemical performance of the alga or its tolerance of desiccation (in the short term), the symbiotic lifestyle involves (1) changes in water relations, (2) a considerable decrease in the net carbon balance and (3) enhanced freezing tolerance., Conclusions: Our results support improved tolerance of sub-zero temperature as the main benefit of lichenization for the photobiont, but highlight that lichenization represents a delicate equilibrium between a mutualistic and a less reciprocal relationship. In a warmer climate scenario, the spread of the free-living Prasiola to the detriment of the lichen form would be likely, with unknown consequences for Maritime Antarctic ecosystems., (© The Author(s) 2019. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
- Published
- 2020
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42. A new genus, Zhurbenkoa , and a novel nutritional mode revealed in the family Malmideaceae (Lecanoromycetes, Ascomycota).
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Flakus A, Etayo J, Pérez-Ortega S, Kukwa M, Palice Z, and Rodriguez-Flakus P
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- Ascomycota cytology, Ascomycota genetics, Classification, DNA, Ribosomal genetics, Europe, Lichens microbiology, Phylogeny, South America, Symbiosis, Ascomycota classification, Host Microbial Interactions physiology
- Abstract
Lichen-inhabiting fungi are highly specialized mycoparasites, commensals or rarely saprotrophs, that are common components of almost every ecosystem, where they develop obligate associations with lichens. Their relevance, however, contrasts with the relatively small number of these fungi described so far. Recent estimates and ongoing studies indicate that a significant fraction of their diversity remains undiscovered and may be expected in tropical regions, in particular in hyperdiverse fog-exposed montane forests. Here, we introduce the new genus Zhurbenkoa , from South America and Europe, for three lichenicolous fungi growing on thalli of the widespread lichen genus Cladonia (Lecanorales). Phylogenetic analyses based on combined sequence data of mt and nuc rDNA obtained from Andean populations (Bolivia) placed Zhurbenkoa as a member of Malmideaceae, a recently introduced family of lichen-forming fungi in the class Lecanoromycetes. Zhurbenkoa is closely related to the genera Savoronala and Sprucidea . The new genus is characterized by the development of grayish brown to almost black apothecia lacking an evident margin, an epihymenium interspersed with crystals (often seen as pruina), a strongly conglutinated hymenium made of noncapitate and sparsely branched paraphyses, a colorless exciple composed of radially arranged hyphae, a Lecanora / Micarea -like ascus type, and aseptate or 1-septate ellipsoidal colorless ascospores. Zhurbenkoa includes two Neotropical ( Z. cladoniarum, Z. latispora ) and one widespread ( Z. epicladonia ) species. The lichenicolous trophic mode is documented for the first time in the Malmideaceae, which until now included only lichen-forming associations between fungi and green algae.
- Published
- 2019
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43. Considerations and consequences of allowing DNA sequence data as types of fungal taxa.
- Author
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Zamora JC, Svensson M, Kirschner R, Olariaga I, Ryman S, Parra LA, Geml J, Rosling A, Adamčík S, Ahti T, Aime MC, Ainsworth AM, Albert L, Albertó E, García AA, Ageev D, Agerer R, Aguirre-Hudson B, Ammirati J, Andersson H, Angelini C, Antonín V, Aoki T, Aptroot A, Argaud D, Sosa BIA, Aronsen A, Arup U, Asgari B, Assyov B, Atienza V, Bandini D, Baptista-Ferreira JL, Baral HO, Baroni T, Barreto RW, Beker H, Bell A, Bellanger JM, Bellù F, Bemmann M, Bendiksby M, Bendiksen E, Bendiksen K, Benedek L, Bérešová-Guttová A, Berger F, Berndt R, Bernicchia A, Biketova AY, Bizio E, Bjork C, Boekhout T, Boertmann D, Böhning T, Boittin F, Boluda CG, Boomsluiter MW, Borovička J, Brandrud TE, Braun U, Brodo I, Bulyonkova T, Burdsall HH Jr, Buyck B, Burgaz AR, Calatayud V, Callac P, Campo E, Candusso M, Capoen B, Carbó J, Carbone M, Castañeda-Ruiz RF, Castellano MA, Chen J, Clerc P, Consiglio G, Corriol G, Courtecuisse R, Crespo A, Cripps C, Crous PW, da Silva GA, da Silva M, Dam M, Dam N, Dämmrich F, Das K, Davies L, De Crop E, De Kesel A, De Lange R, De Madrignac Bonzi B, Dela Cruz TEE, Delgat L, Demoulin V, Desjardin DE, Diederich P, Dima B, Dios MM, Divakar PK, Douanla-Meli C, Douglas B, Drechsler-Santos ER, Dyer PS, Eberhardt U, Ertz D, Esteve-Raventós F, Salazar JAE, Evenson V, Eyssartier G, Farkas E, Favre A, Fedosova AG, Filippa M, Finy P, Flakus A, Fos S, Fournier J, Fraiture A, Franchi P, Molano AEF, Friebes G, Frisch A, Fryday A, Furci G, Márquez RG, Garbelotto M, García-Martín JM, Otálora MAG, Sánchez DG, Gardiennet A, Garnica S, Benavent IG, Gates G, da Cruz Lima Gerlach A, Ghobad-Nejhad M, Gibertoni TB, Grebenc T, Greilhuber I, Grishkan B, Groenewald JZ, Grube M, Gruhn G, Gueidan C, Gulden G, Gusmão LF, Hafellner J, Hairaud M, Halama M, Hallenberg N, Halling RE, Hansen K, Harder CB, Heilmann-Clausen J, Helleman S, Henriot A, Hernandez-Restrepo M, Herve R, Hobart C, Hoffmeister M, Høiland K, Holec J, Holien H, Hughes K, Hubka V, Huhtinen S, Ivančević B, Jagers M, Jaklitsch W, Jansen A, Jayawardena RS, Jeppesen TS, Jeppson M, Johnston P, Jørgensen PM, Kärnefelt I, Kalinina LB, Kantvilas G, Karadelev M, Kasuya T, Kautmanová I, Kerrigan RW, Kirchmair M, Kiyashko A, Knapp DG, Knudsen H, Knudsen K, Knutsson T, Kolařík M, Kõljalg U, Košuthová A, Koszka A, Kotiranta H, Kotkova V, Koukol O, Kout J, Kovács GM, Kříž M, Kruys Å, Kučera V, Kudzma L, Kuhar F, Kukwa M, Arun Kumar TK, Kunca V, Kušan I, Kuyper TW, Lado C, Læssøe T, Lainé P, Langer E, Larsson E, Larsson KH, Laursen G, Lechat C, Lee S, Lendemer JC, Levin L, Lindemann U, Lindström H, Liu X, Hernandez RCL, Llop E, Locsmándi C, Lodge DJ, Loizides M, Lőkös L, Luangsa-Ard J, Lüderitz M, Lumbsch T, Lutz M, Mahoney D, Malysheva E, Malysheva V, Manimohan P, Marin-Felix Y, Marques G, Martínez-Gil R, Marson G, Mata G, Matheny PB, Mathiassen GH, Matočec N, Mayrhofer H, Mehrabi M, Melo I, Mešić A, Methven AS, Miettinen O, Romero AMM, Miller AN, Mitchell JK, Moberg R, Moreau PA, Moreno G, Morozova O, Morte A, Muggia L, González GM, Myllys L, Nagy I, Nagy LG, Neves MA, Niemelä T, Nimis PL, Niveiro N, Noordeloos ME, Nordin A, Noumeur SR, Novozhilov Y, Nuytinck J, Ohenoja E, Fiuza PO, Orange A, Ordynets A, Ortiz-Santana B, Pacheco L, Pál-Fám F, Palacio M, Palice Z, Papp V, Pärtel K, Pawlowska J, Paz A, Peintner U, Pennycook S, Pereira OL, Daniëls PP, Pérez-De-Gregorio Capella MÀ, Del Amo CMP, Gorjón SP, Pérez-Ortega S, Pérez-Vargas I, Perry BA, Petersen JH, Petersen RH, Pfister DH, Phukhamsakda C, Piątek M, Piepenbring M, Pino-Bodas R, Esquivel JPP, Pirot P, Popov ES, Popoff O, Álvaro MP, Printzen C, Psurtseva N, Purahong W, Quijada L, Rambold G, Ramírez NA, Raja H, Raspé O, Raymundo T, Réblová M, Rebriev YA, de Dios Reyes García J, Ripoll MÁR, Richard F, Richardson MJ, Rico VJ, Robledo GL, Barbosa FR, Rodriguez-Caycedo C, Rodriguez-Flakus P, Ronikier A, Casas LR, Rusevska K, Saar G, Saar I, Salcedo I, Martínez SMS, Montoya CAS, Sánchez-Ramírez S, Sandoval-Sierra JV, Santamaria S, Monteiro JS, Schroers HJ, Schulz B, Schmidt-Stohn G, Schumacher T, Senn-Irlet B, Ševčíková H, Shchepin O, Shirouzu T, Shiryaev A, Siepe K, Sir EB, Sohrabi M, Soop K, Spirin V, Spribille T, Stadler M, Stalpers J, Stenroos S, Suija A, Sunhede S, Svantesson S, Svensson S, Svetasheva TY, Świerkosz K, Tamm H, Taskin H, Taudière A, Tedebrand JO, Lahoz RT, Temina M, Thell A, Thines M, Thor G, Thüs H, Tibell L, Tibell S, Timdal E, Tkalčec Z, Tønsberg T, Trichies G, Triebel D, Tsurykau A, Tulloss RE, Tuovinen V, Sosa MU, Urcelay C, Valade F, Garza RV, van den Boom P, Van Vooren N, Vasco-Palacios AM, Vauras J, Velasco Santos JM, Vellinga E, Verbeken A, Vetlesen P, Vizzini A, Voglmayr H, Volobuev S, von Brackel W, Voronina E, Walther G, Watling R, Weber E, Wedin M, Weholt Ø, Westberg M, Yurchenko E, Zehnálek P, Zhang H, Zhurbenko MP, and Ekman S
- Abstract
Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11
th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.- Published
- 2018
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44. From Alaska to Antarctica: Species boundaries and genetic diversity of Prasiola (Trebouxiophyceae), a foliose chlorophyte associated with the bipolar lichen-forming fungus Mastodia tessellata.
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Garrido-Benavent I, Pérez-Ortega S, and de Los Ríos A
- Subjects
- Alaska, Antarctic Regions, Bayes Theorem, Cluster Analysis, Genetic Loci, Haplotypes genetics, Likelihood Functions, Phylogeny, Phylogeography, Polymorphism, Genetic, Sequence Analysis, DNA, Species Specificity, Ascomycota genetics, Chlorophyta genetics, Chlorophyta microbiology, Genetic Variation, Lichens microbiology, Symbiosis
- Abstract
Symbiotic associations between green algae (Chlorophyta) and fungi give rise to morphologically and eco-physiologically distinct entities, or so-called, lichens. In one of the most peculiar of these associations, the partners are species of the macroscopic genus Prasiola (Trebouxiophyceae) and the ascomycete Mastodia tessellata (Verrucariaceae). This is the only known case of a lichen symbiosis involving a foliose green alga. Despite intense research targeted at understanding the biology of this particular association, little is known about the genetic variability of its symbionts. This study focuses on the photobiont partner of this lichen and was designed to explore and compare its genetic diversity along a latitudinal axis from Alaska to Antarctica. Molecular sequence data were generated for three loci: two nuclear markers (nrITS, RPL10A) and one plastid-encoded marker (tufA). The usefulness of the Prasiola nrITS and RPL10A data was examined at the species and intraspecific levels. We used the population assignment tests implemented in BAPS and STRUCTURE and two algorithmic species delimitation procedures (ABGD, GMYC) to generate species boundary discovery hypotheses, which were subsequently tested using Bayes factors. Population genetic differentiation and structure were also assessed through fixation indices, polymorphism statistics and haplotype networks. Based on the results of the species validation method, we propose that at least two species of Prasiola associate with the lichen-forming fungus Mastodia tessellata. Of these, P. borealis is broadly distributed in Alaska, Tierra del Fuego and the Antarctic Peninsula, whereas the second, undescribed, species is restricted to the Antarctic Peninsula. We detected significant phylogeographic substructure in P. borealis, including greater haplotype diversity in the Tierra del Fuego populations. Our findings provide new data that will be useful to unravel the cryptic diversity and phylogeographic patterns of the green alga partners of lichens., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2017
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45. Heveochlorella (Trebouxiophyceae): a little-known genus of unicellular green algae outside the Trebouxiales emerges unexpectedly as a major clade of lichen photobionts in foliicolous communities.
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Sanders WB, Pérez-Ortega S, Nelsen MP, Lücking R, and de Los Ríos A
- Subjects
- Algal Proteins genetics, Chlorophyta genetics, DNA, Algal genetics, Florida, Sequence Analysis, DNA, Chlorophyta classification, Chlorophyta physiology, Lichens physiology, Phylogeny, Symbiosis
- Abstract
Foliicolous lichens are formed by diverse, highly specialized fungi that establish themselves and complete their life cycle within the brief duration of their leaf substratum. Over half of these lichen-forming fungi are members of either the Gomphillaceae or Pilocarpaceae, and associate with Trebouxia-like green algae whose identities have never been positively determined. We investigated the phylogenetic affinities of these photobionts to better understand their role in lichen establishment on an ephemeral surface. Thallus samples of Gomphillaceae and Pilocarpaceae were collected from foliicolous communities in southwest Florida and processed for sequencing of photobiont marker genes, algal cultivation and/or TEM. Additional specimens from these families and also from Aspidothelium (Thelenellaceae) were collected from a variety of substrates globally. Sequences from rbcL and nuSSU regions were obtained and subjected to Maximum Likelihood and Bayesian analyses. Analysis of 37 rbcL and 7 nuSSU algal sequences placed all photobionts studied within the provisional trebouxiophycean assemblage known as the Watanabea clade. All but three of the sequences showed affinities within Heveochlorella, a genus recently described from tree trunks in East Asia. The photobiont chloroplast showed multiple thylakoid stacks penetrating the pyrenoid centripetally as tubules lined with pyrenoglobuli, similar to the two described species of Heveochlorella. We conclude that Heveochlorella includes algae of potentially major importance as lichen photobionts, particularly within (but not limited to) foliicolous communities in tropical and subtropical regions worldwide. The ease with which they may be cultivated on minimal media suggests their potential to thrive free-living as well as in lichen symbiosis., (© 2016 Phycological Society of America.)
- Published
- 2016
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46. Functional ecology of soil microbial communities along a glacier forefield in Tierra del Fuego (Chile).
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Fernández-Martínez MA, Pointing SB, Pérez-Ortega S, Arróniz-Crespo M, Green TGA, Rozzi R, Sancho LG, and de Los Ríos A
- Subjects
- Carbon metabolism, Carbon Cycle, Chile, Ecology, Nitrogen metabolism, Oligonucleotide Array Sequence Analysis, Ice Cover microbiology, Soil Microbiology
- Abstract
A previously established chronosequence from Pia Glacier forefield in Tierra del Fuego (Chile) containing soils of different ages (from bare soils to forest ones) is analyzed. We used this chronosequence as framework to postulate that microbial successional development would be accompanied by changes in functionality. To test this, the GeoChip functional microarray was used to identify diversity of genes involved in microbial carbon and nitrogen metabolism, as well as other genes related to microbial stress response and biotic interactions. Changes in putative functionality generally reflected succession-related taxonomic composition of soil microbiota. Major shifts in carbon fixation and catabolism were observed, as well as major changes in nitrogen metabolism. At initial microbial dominated succession stages, microorganisms could be mainly involved in pathways that help to increase nutrient availability, while more complex microbial transformations such as denitrification and methanogenesis, and later degradation of complex organic substrates, could be more prevalent at vegetated successional states. Shifts in virus populations broadly reflected changes in microbial diversity. Conversely, stress response pathways appeared relatively well conserved for communities along the entire chronosequence. We conclude that nutrient utilization is likely the major driver of microbial succession in these soils. [Int Microbiol 19(3):161-173 (2016)]., (Copyright© by the Spanish Society for Microbiology and Institute for Catalan Studies.)
- Published
- 2016
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47. Understanding lichenicolous heterobasidiomycetes: new taxa and reproductive innovations in Tremella s.l.
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Zamora JC, Millanes AM, Wedin M, Rico VJ, and Pérez-Ortega S
- Subjects
- Basidiomycota cytology, Basidiomycota genetics, Phylogeny, Species Specificity, Basidiomycota classification, Basidiomycota physiology, Lichens microbiology
- Abstract
Four new lichenicolous Tremella species are described and characterized morphologically and molecularly. Tremella celata grows on Ramalina fraxinea, inducing the formation of inconspicuous galls, and having hyphae with incomplete clamps. Tremella endosporogena develops intrahymenially in the apothecia of Lecanora carpinea, having single-celled basidia and clampless hyphae. Tremella diederichiana is the name proposed for a species micromorphologically close to T. christiansenii but inducing the formation of small, pale galls on the thallus and apothecia of Lecidea aff. erythrophaea Tremella variae grows on Lecanora varia thallus, instead of on the apothecia, as do the other known Tremella species parasitizing Lecanora s.l. Phylogenetic relationships and host specificity of these species are investigated and compared with other taxa that show morphological resemblances, phylogenetic affinities or similar hosts. The formation of mitotic conidia inside old basidia (endospores), which is a poorly known reproductive strategy in the Basidiomycota, is also a distinctive character of Tremella endosporogena A discussion on the reproductive role and systematic implications of endospores is included., (© 2016 by The Mycological Society of America.)
- Published
- 2016
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48. Evolution of complex symbiotic relationships in a morphologically derived family of lichen-forming fungi.
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Divakar PK, Crespo A, Wedin M, Leavitt SD, Hawksworth DL, Myllys L, McCune B, Randlane T, Bjerke JW, Ohmura Y, Schmitt I, Boluda CG, Alors D, Roca-Valiente B, Del-Prado R, Ruibal C, Buaruang K, Núñez-Zapata J, Amo de Paz G, Rico VJ, Molina MC, Elix JA, Esslinger TL, Tronstad IK, Lindgren H, Ertz D, Gueidan C, Saag L, Mark K, Singh G, Dal Grande F, Parnmen S, Beck A, Benatti MN, Blanchon D, Candan M, Clerc P, Goward T, Grube M, Hodkinson BP, Hur JS, Kantvilas G, Kirika PM, Lendemer J, Mattsson JE, Messuti MI, Miadlikowska J, Nelsen M, Ohlson JI, Pérez-Ortega S, Saag A, Sipman HJ, Sohrabi M, Thell A, Thor G, Truong C, Yahr R, Upreti DK, Cubas P, and Lumbsch HT
- Subjects
- Classification, Biological Evolution, Genes, Fungal, Lichens genetics, Parmeliaceae genetics, Phylogeny, Symbiosis
- Abstract
We studied the evolutionary history of the Parmeliaceae (Lecanoromycetes, Ascomycota), one of the largest families of lichen-forming fungi with complex and variable morphologies, also including several lichenicolous fungi. We assembled a six-locus data set including nuclear, mitochondrial and low-copy protein-coding genes from 293 operational taxonomic units (OTUs). The lichenicolous lifestyle originated independently three times in lichenized ancestors within Parmeliaceae, and a new generic name is introduced for one of these fungi. In all cases, the independent origins occurred c. 24 million yr ago. Further, we show that the Paleocene, Eocene and Oligocene were key periods when diversification of major lineages within Parmeliaceae occurred, with subsequent radiations occurring primarily during the Oligocene and Miocene. Our phylogenetic hypothesis supports the independent origin of lichenicolous fungi associated with climatic shifts at the Oligocene-Miocene boundary. Moreover, diversification bursts at different times may be crucial factors driving the diversification of Parmeliaceae. Additionally, our study provides novel insight into evolutionary relationships in this large and diverse family of lichen-forming ascomycetes., (© 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.)
- Published
- 2015
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49. Ecological Specialization of Two Photobiont-Specific Maritime Cyanolichen Species of the Genus Lichina.
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Ortiz-Álvarez R, de Los Ríos A, Fernández-Mendoza F, Torralba-Burrial A, and Pérez-Ortega S
- Subjects
- Ascomycota classification, Base Sequence, Bayes Theorem, Cyanobacteria classification, Ecosystem, Fresh Water, Genetic Speciation, Haplotypes, Lichens classification, Molecular Sequence Data, Operon, Phycocyanin biosynthesis, Seawater, Spain, Symbiosis physiology, Ascomycota genetics, Cyanobacteria genetics, Lichens genetics, Phylogeny, RNA, Ribosomal, 16S genetics
- Abstract
All fungi in the class Lichinomycetes are lichen-forming and exclusively associate with cyanobacteria. Two closely related maritime species of the genus Lichina (L. confinis and L. pygmaea) show similar distribution ranges in the Northeast Atlantic, commonly co-occurring at the same rocky shores but occupying different littoral zones. By means of 16S rRNA and phycocyanin operon markers we studied a) the phylogenetic relationships of cyanobionts associated with these species, b) the match of divergence times between both symbionts, and c) whether Lichina species differ in photobiont association and in how geography and ecology affect selectivity. The cyanobionts studied are closely related to both marine and freshwater strains of the genus Rivularia. We found evidence of a high specificity to particular cyanobiont lineages in both species: Lichina pygmaea and L. confinis incorporate specific lineages of Rivularia that do not overlap at the haplotype nor the OTU levels. Dating divergences of the fungal and cyanobacterial partners revealed an asynchronous origin of both lineages. Within each fungal species, selectivity varied across the studied area, influenced by environmental conditions (both atmospheric and marine), although patterns were highly correlated between both lichen taxa. Ecological speciation due to the differential association of photobionts to each littoral zone is suspected to have occurred in marine Lichina.
- Published
- 2015
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50. Photobiont selectivity leads to ecological tolerance and evolutionary divergence in a polymorphic complex of lichenized fungi.
- Author
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Muggia L, Pérez-Ortega S, Kopun T, Zellnig G, and Grube M
- Subjects
- Algal Proteins genetics, Ascomycota physiology, Chlorophyta physiology, DNA, Algal genetics, DNA, Intergenic genetics, Molecular Sequence Data, Phylogeny, Polymorphism, Single-Stranded Conformational, Sequence Analysis, DNA, Biological Evolution, Chlorophyta genetics, Ecosystem, Symbiosis
- Abstract
Background and Aims: The integrity and evolution of lichen symbioses depend on a fine-tuned combination of algal and fungal genotypes. Geographically widespread species complexes of lichenized fungi can occur in habitats with slightly varying ecological conditions, and it remains unclear how this variation correlates with symbiont selectivity patterns in lichens. In an attempt to address this question, >300 samples were taken of the globally distributed and ecologically variable lichen-forming species complex Tephromela atra, together with closely allied species, in order to study genetic diversity and the selectivity patterns of their photobionts., Methods: Lichen thalli of T. atra and of closely related species T. grumosa, T. nashii and T. atrocaesia were collected from six continents, across 24 countries and 62 localities representing a wide range of habitats. Analyses of genetic diversity and phylogenetic relationships were carried out both for photobionts amplified directly from the lichen thalli and from those isolated in axenic cultures. Morphological and anatomical traits were studied with light and transmission electron microscopy in the isolated algal strains., Key Results: Tephromela fungal species were found to associate with 12 lineages of Trebouxia. Five new clades demonstrate the still-unrecognized genetic diversity of lichen algae. Culturable, undescribed lineages were also characterized by phenotypic traits. Strong selectivity of the mycobionts for the photobionts was observed in six monophyletic Tephromela clades. Seven Trebouxia lineages were detected in the poorly resolved lineage T. atra sensu lato, where co-occurrence of multiple photobiont lineages in single thalli was repeatedly observed., Conclusions: Low selectivity apparently allows widespread lichen-forming fungi to establish successful symbioses with locally adapted photobionts in a broader range of habitats. This flexibility might correlate with both lower phylogenetic resolution and evolutionary divergence in species complexes of crustose lichen-forming fungi., (© The Author 2014. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.)
- Published
- 2014
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