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Considerations and consequences of allowing DNA sequence data as types of fungal taxa.

Authors :
Zamora JC
Svensson M
Kirschner R
Olariaga I
Ryman S
Parra LA
Geml J
Rosling A
Adamčík S
Ahti T
Aime MC
Ainsworth AM
Albert L
Albertó E
García AA
Ageev D
Agerer R
Aguirre-Hudson B
Ammirati J
Andersson H
Angelini C
Antonín V
Aoki T
Aptroot A
Argaud D
Sosa BIA
Aronsen A
Arup U
Asgari B
Assyov B
Atienza V
Bandini D
Baptista-Ferreira JL
Baral HO
Baroni T
Barreto RW
Beker H
Bell A
Bellanger JM
Bellù F
Bemmann M
Bendiksby M
Bendiksen E
Bendiksen K
Benedek L
Bérešová-Guttová A
Berger F
Berndt R
Bernicchia A
Biketova AY
Bizio E
Bjork C
Boekhout T
Boertmann D
Böhning T
Boittin F
Boluda CG
Boomsluiter MW
Borovička J
Brandrud TE
Braun U
Brodo I
Bulyonkova T
Burdsall HH Jr
Buyck B
Burgaz AR
Calatayud V
Callac P
Campo E
Candusso M
Capoen B
Carbó J
Carbone M
Castañeda-Ruiz RF
Castellano MA
Chen J
Clerc P
Consiglio G
Corriol G
Courtecuisse R
Crespo A
Cripps C
Crous PW
da Silva GA
da Silva M
Dam M
Dam N
Dämmrich F
Das K
Davies L
De Crop E
De Kesel A
De Lange R
De Madrignac Bonzi B
Dela Cruz TEE
Delgat L
Demoulin V
Desjardin DE
Diederich P
Dima B
Dios MM
Divakar PK
Douanla-Meli C
Douglas B
Drechsler-Santos ER
Dyer PS
Eberhardt U
Ertz D
Esteve-Raventós F
Salazar JAE
Evenson V
Eyssartier G
Farkas E
Favre A
Fedosova AG
Filippa M
Finy P
Flakus A
Fos S
Fournier J
Fraiture A
Franchi P
Molano AEF
Friebes G
Frisch A
Fryday A
Furci G
Márquez RG
Garbelotto M
García-Martín JM
Otálora MAG
Sánchez DG
Gardiennet A
Garnica S
Benavent IG
Gates G
da Cruz Lima Gerlach A
Ghobad-Nejhad M
Gibertoni TB
Grebenc T
Greilhuber I
Grishkan B
Groenewald JZ
Grube M
Gruhn G
Gueidan C
Gulden G
Gusmão LF
Hafellner J
Hairaud M
Halama M
Hallenberg N
Halling RE
Hansen K
Harder CB
Heilmann-Clausen J
Helleman S
Henriot A
Hernandez-Restrepo M
Herve R
Hobart C
Hoffmeister M
Høiland K
Holec J
Holien H
Hughes K
Hubka V
Huhtinen S
Ivančević B
Jagers M
Jaklitsch W
Jansen A
Jayawardena RS
Jeppesen TS
Jeppson M
Johnston P
Jørgensen PM
Kärnefelt I
Kalinina LB
Kantvilas G
Karadelev M
Kasuya T
Kautmanová I
Kerrigan RW
Kirchmair M
Kiyashko A
Knapp DG
Knudsen H
Knudsen K
Knutsson T
Kolařík M
Kõljalg U
Košuthová A
Koszka A
Kotiranta H
Kotkova V
Koukol O
Kout J
Kovács GM
Kříž M
Kruys Å
Kučera V
Kudzma L
Kuhar F
Kukwa M
Arun Kumar TK
Kunca V
Kušan I
Kuyper TW
Lado C
Læssøe T
Lainé P
Langer E
Larsson E
Larsson KH
Laursen G
Lechat C
Lee S
Lendemer JC
Levin L
Lindemann U
Lindström H
Liu X
Hernandez RCL
Llop E
Locsmándi C
Lodge DJ
Loizides M
Lőkös L
Luangsa-Ard J
Lüderitz M
Lumbsch T
Lutz M
Mahoney D
Malysheva E
Malysheva V
Manimohan P
Marin-Felix Y
Marques G
Martínez-Gil R
Marson G
Mata G
Matheny PB
Mathiassen GH
Matočec N
Mayrhofer H
Mehrabi M
Melo I
Mešić A
Methven AS
Miettinen O
Romero AMM
Miller AN
Mitchell JK
Moberg R
Moreau PA
Moreno G
Morozova O
Morte A
Muggia L
González GM
Myllys L
Nagy I
Nagy LG
Neves MA
Niemelä T
Nimis PL
Niveiro N
Noordeloos ME
Nordin A
Noumeur SR
Novozhilov Y
Nuytinck J
Ohenoja E
Fiuza PO
Orange A
Ordynets A
Ortiz-Santana B
Pacheco L
Pál-Fám F
Palacio M
Palice Z
Papp V
Pärtel K
Pawlowska J
Paz A
Peintner U
Pennycook S
Pereira OL
Daniëls PP
Pérez-De-Gregorio Capella MÀ
Del Amo CMP
Gorjón SP
Pérez-Ortega S
Pérez-Vargas I
Perry BA
Petersen JH
Petersen RH
Pfister DH
Phukhamsakda C
Piątek M
Piepenbring M
Pino-Bodas R
Esquivel JPP
Pirot P
Popov ES
Popoff O
Álvaro MP
Printzen C
Psurtseva N
Purahong W
Quijada L
Rambold G
Ramírez NA
Raja H
Raspé O
Raymundo T
Réblová M
Rebriev YA
de Dios Reyes García J
Ripoll MÁR
Richard F
Richardson MJ
Rico VJ
Robledo GL
Barbosa FR
Rodriguez-Caycedo C
Rodriguez-Flakus P
Ronikier A
Casas LR
Rusevska K
Saar G
Saar I
Salcedo I
Martínez SMS
Montoya CAS
Sánchez-Ramírez S
Sandoval-Sierra JV
Santamaria S
Monteiro JS
Schroers HJ
Schulz B
Schmidt-Stohn G
Schumacher T
Senn-Irlet B
Ševčíková H
Shchepin O
Shirouzu T
Shiryaev A
Siepe K
Sir EB
Sohrabi M
Soop K
Spirin V
Spribille T
Stadler M
Stalpers J
Stenroos S
Suija A
Sunhede S
Svantesson S
Svensson S
Svetasheva TY
Świerkosz K
Tamm H
Taskin H
Taudière A
Tedebrand JO
Lahoz RT
Temina M
Thell A
Thines M
Thor G
Thüs H
Tibell L
Tibell S
Timdal E
Tkalčec Z
Tønsberg T
Trichies G
Triebel D
Tsurykau A
Tulloss RE
Tuovinen V
Sosa MU
Urcelay C
Valade F
Garza RV
van den Boom P
Van Vooren N
Vasco-Palacios AM
Vauras J
Velasco Santos JM
Vellinga E
Verbeken A
Vetlesen P
Vizzini A
Voglmayr H
Volobuev S
von Brackel W
Voronina E
Walther G
Watling R
Weber E
Wedin M
Weholt Ø
Westberg M
Yurchenko E
Zehnálek P
Zhang H
Zhurbenko MP
Ekman S
Source :
IMA fungus [IMA Fungus] 2018 Jun; Vol. 9 (1), pp. 167-175. Date of Electronic Publication: 2018 May 24.
Publication Year :
2018

Abstract

Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11 <superscript>th</superscript> International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN.

Details

Language :
English
ISSN :
2210-6340
Volume :
9
Issue :
1
Database :
MEDLINE
Journal :
IMA fungus
Publication Type :
Academic Journal
Accession number :
30018877
Full Text :
https://doi.org/10.5598/imafungus.2018.09.01.10