1. Thermal Denaturation of Fresh Frozen Tissue Enhances Mass Spectrometry Detection of Peptides.
- Author
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Kruse ARS, Judd AM, Gutierrez DB, Allen JL, Dufresne M, Farrow MA, Powers AC, Norris JL, Caprioli RM, and Spraggins JM
- Subjects
- Humans, Female, Colon chemistry, Ovary chemistry, Hot Temperature, Tandem Mass Spectrometry methods, Freezing, Peptides chemistry, Peptides analysis, Pancreas chemistry, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization methods
- Abstract
Thermal denaturation (TD), known as antigen retrieval, heats tissue samples in a buffered solution to expose protein epitopes. Thermal denaturation of formalin-fixed paraffin-embedded samples enhances on-tissue tryptic digestion, increasing peptide detection using matrix-assisted laser desorption ionization imaging mass spectrometry (MALDI IMS). We investigated the tissue-dependent effects of TD on peptide MALDI IMS and liquid chromatography-tandem mass spectrometry signal in unfixed, frozen human colon, ovary, and pancreas tissue. In a triplicate experiment using time-of-flight, orbitrap, and Fourier-transform ion cyclotron resonance mass spectrometry platforms, we found that TD had a tissue-dependent effect on peptide signal, resulting in a (22.5%) improvement in peptide detection from the colon, a (73.3%) improvement in ovary tissue, and a (96.6%) improvement in pancreas tissue. Biochemical analysis of identified peptides shows that TD facilitates identification of hydrophobic peptides.
- Published
- 2024
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