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1. SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2

2. Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function

3. Genomic reconstruction of the SARS-CoV-2 epidemic in England

4. ICTV Virus Taxonomy Profile: Herpesviridae 2021

5. An integrated national scale SARS-CoV-2 genomic surveillance network

6. ICTV Virus Taxonomy Profile: Arenaviridae

7. Genomic reconstruction of the SARS-CoV-2 epidemic in England

8. Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes

9. SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2

10. COVID-19 due to the B.1.617.2 (Delta) variant compared to B.1.1.7 (Alpha) variant of SARS-CoV-2: a prospective observational cohort study

11. The SARS-CoV-2 Alpha variant was associated with increased clinical severity of COVID-19 in Scotland: A genomics-based retrospective cohort analysis

12. Tracking SARS-CoV-2 mutations and variants through the COG-UK-Mutation Explorer

13. Spatial growth rate of emerging SARS-CoV-2 lineages in England, September 2020-December 2021

14. Expanding the genomic diversity of human anelloviruses.

15. Alphavirus infection triggers selective cytoplasmic translocation of nuclear RBPs with moonlighting antiviral roles.

16. Mutational signature dynamics indicate SARS-CoV-2's evolutionary capacity is driven by host antiviral molecules.

17. SARS-CoV-2 in Domestic UK Cats from Alpha to Omicron: Swab Surveillance and Case Reports.

18. Direct Nanopore Sequencing of Human Cytomegalovirus Genomes from High-Viral-Load Clinical Samples.

19. Evaluating the potential of whole-genome sequencing for tracing transmission routes in experimental infections and natural outbreaks of bovine respiratory syncytial virus.

20. Recent changes to virus taxonomy ratified by the International Committee on Taxonomy of Viruses (2022).

21. Quantifying and Cataloguing Unknown Sequences within Human Microbiomes.

22. Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function.

23. Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function.

24. ICTV Virus Taxonomy Profile: Herpesviridae 2021.

25. In vitro selection of Remdesivir resistance suggests evolutionary predictability of SARS-CoV-2.

26. The antiviral state has shaped the CpG composition of the vertebrate interferome to avoid self-targeting.

27. Changes to virus taxonomy and to the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2021).

28. Detection of SARS-CoV-2 in respiratory samples from cats in the UK associated with human-to-cat transmission.

29. Author Correction: Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland.

30. A plasmid DNA-launched SARS-CoV-2 reverse genetics system and coronavirus toolkit for COVID-19 research.

31. Characterizing and Evaluating the Zoonotic Potential of Novel Viruses Discovered in Vampire Bats.

32. Publisher Correction: Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland.

33. Diversification of mammalian deltaviruses by host shifting.

34. Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland.

35. Changes to virus taxonomy and the Statutes ratified by the International Committee on Taxonomy of Viruses (2020).

36. Population genomics of louping ill virus provide new insights into the evolution of tick-borne flaviviruses.

38. No evidence for distinct types in the evolution of SARS-CoV-2.

39. GoPrime: Development of an In Silico Framework to Predict the Performance of Real-Time PCR Primers and Probes Using Foot-and-Mouth Disease Virus as a Model.

40. Estimating viral bottleneck sizes for FMDV transmission within and between hosts and implications for the rate of viral evolution.

41. Demographic and environmental drivers of metagenomic viral diversity in vampire bats.

42. Virus Adaptation and Selection Following Challenge of Animals Vaccinated against Classical Swine Fever Virus.

43. Attenuation of Infectious Bronchitis Virus in Eggs Results in Different Patterns of Genomic Variation across Multiple Replicates.

44. Using noninvasive metagenomics to characterize viral communities from wildlife.

45. Predicting reservoir hosts and arthropod vectors from evolutionary signatures in RNA virus genomes.

46. A Fatal Case of Louping-ill in a Dog: Immunolocalization and Full Genome Sequencing of the Virus.

47. Genetic diversity, infection prevalence, and possible transmission routes of Bartonella spp. in vampire bats.

48. Identifying genotype specific elevated-risk areas and associated herd risk factors for bovine tuberculosis spread in British cattle.

49. Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV).

50. Fundamental properties of the mammalian innate immune system revealed by multispecies comparison of type I interferon responses.

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