335 results on '"Olesen, Niels Jørgen"'
Search Results
2. Epitope mapping of the monoclonal antibody IP5B11 used for detection of viral haemorrhagic septicaemia virus facilitated by genome sequencing of carpione novirhabdovirus
- Author
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Ito, Takafumi, Mekata, Tohru, Olesen, Niels Jørgen, and Lorenzen, Niels
- Published
- 2023
- Full Text
- View/download PDF
3. Pathogenicity of two lineages of infectious hematopoietic necrosis virus (IHNV) to farmed rainbow trout (Oncorhynchus mykiss) in South Korea
- Author
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Kim, Hyoung Jun, Olesen, Niels Jørgen, Dale, Ole Bendik, Kim, Young Chul, Jung, Tae Sung, Vendramin, Niccolò, and Kwon, Se Ryun
- Published
- 2023
- Full Text
- View/download PDF
4. Development of a novel real-time RT-PCR method using peptide nucleic acid (PNA) probes for detecting and genotyping of viral haemorrhagic septicaemia virus (VHSV)
- Author
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Kim, Hyoung Jun, Kwon, Se Ryun, Olesen, Niels Jørgen, and Cuenca, Argelia
- Published
- 2023
- Full Text
- View/download PDF
5. Skin immune response of rainbow trout (Oncorhynchus mykiss) experimentally exposed to the disease Red Mark Syndrome
- Author
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von Gersdorff Jørgensen, Louise, Schmidt, Jacob Günther, Chen, Defang, Kania, Per Walter, Buchmann, Kurt, and Olesen, Niels Jørgen
- Published
- 2019
- Full Text
- View/download PDF
6. Validation of a novel one-step reverse transcription polymerase chain reaction method for detecting viral haemorrhagic septicaemia virus
- Author
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Kim, Hyoung Jun, Cuenca, Argelia, and Olesen, Niels Jørgen
- Published
- 2018
- Full Text
- View/download PDF
7. Species which may act as vectors or reservoirs of diseases covered by the Animal Health Law:Listed pathogens of crustaceans
- Author
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Nielsen, Søren Saxmose, Alvarez, Julio, Bicout, Dominique, Calistri, Paolo, Canali, Elisabetta, Drewe, Julian Ashley, Garin-Bastuji, Bruno, Gonzales Rojas, José Louis, Smith, Christian Gortazar, Herskin, Mette, Michel, Virginie, Miranda Chueca, Miguel Angel, Padalino, Barbara, Spoolder, Hans, Ståhl, Karl, Velarde, Antonio, Viltrop, Arvo, Winckler, Christoph, Arzul, Isabelle, Dharmaveer, Shetty, Olesen, Niels Jørgen, Schiøtt, Morten, Sindre, Hilde, Stone, David, Vendramin, Niccoló, Alemu, Selam, Antoniou, Sotiria Eleni, Aznar, Inma, Barizzone, Fulvio, Dhollander, Sofie, Gnocchi, Marzia, Karagianni, Anna Eleonora, Kero, Linnea Lindgren, Munoz Guajardo, Irene Pilar, Roberts, Helen, Nielsen, Søren Saxmose, Alvarez, Julio, Bicout, Dominique, Calistri, Paolo, Canali, Elisabetta, Drewe, Julian Ashley, Garin-Bastuji, Bruno, Gonzales Rojas, José Louis, Smith, Christian Gortazar, Herskin, Mette, Michel, Virginie, Miranda Chueca, Miguel Angel, Padalino, Barbara, Spoolder, Hans, Ståhl, Karl, Velarde, Antonio, Viltrop, Arvo, Winckler, Christoph, Arzul, Isabelle, Dharmaveer, Shetty, Olesen, Niels Jørgen, Schiøtt, Morten, Sindre, Hilde, Stone, David, Vendramin, Niccoló, Alemu, Selam, Antoniou, Sotiria Eleni, Aznar, Inma, Barizzone, Fulvio, Dhollander, Sofie, Gnocchi, Marzia, Karagianni, Anna Eleonora, Kero, Linnea Lindgren, Munoz Guajardo, Irene Pilar, and Roberts, Helen
- Abstract
Vector or reservoir species of five fish diseases listed in the Animal Health Law were identified, based on evidence generated through an extensive literature review (ELR), to support a possible updating of Regulation (EU) 2018/1882. Fish species on or in which highly polymorphic region-deleted infectious salmon anaemia virus (HPR∆ ISAV), Koi herpes virus (KHV), epizootic haematopoietic necrosis virus (EHNV), infectious haematopoietic necrosis virus (IHNV) or viral haemorrhagic septicaemia virus (VHSV) were detected, in the field or during experiments, were classified as reservoir species with different levels of certainty depending on the diagnostic tests used. Where experimental evidence indicated transmission of the pathogen from a studied species to another known susceptible species, the studied species was classified as a vector species. Although the quantification of the risk of spread of the pathogens by the vectors or reservoir species was not part of the terms or reference, such risks do exist for the vector species, since transmission from infected vector species to susceptible species was proven. Where evidence for transmission from infected fish was not found, these were defined as reservoirs. Nonetheless, the risk of the spread of the pathogens from infected reservoir species cannot be excluded. Evidence identifying conditions that may prevent transmission by vectors or reservoir fish species during transport was collected from scientific literature. For VHSV, IHNV or HPR∆ ISAV, it was concluded that under transport conditions at temperatures below 25°C, it is likely (66–90%) they will remain infective. Therefore, vector or reservoir species that may have been exposed to these pathogens in an affected area in the wild, aquaculture establishments or through water supply can possibly transmit VHSV, IHNV or HPR∆ ISAV into a non-affected area when transported at a temperature below 25°C. The conclusion was the same for EHN and KHV; however, they are like
- Published
- 2023
8. Species which may act as vectors or reservoirs of diseases covered by the Animal Health Law: Listed pathogens of molluscs
- Author
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Efsa Panel On Animal Health And Welfare (ahaw), Nielsen, Søren Saxmose, Alvarez, Julio, Bicout, Dominique, Calistri, Paolo, Canali, Elisabetta, Drewe, Julian Ashley, Garin‐bastuji, Bruno, Gonzales Rojas, José Louis, Smith, Christian Gortazar, Herskin, Mette, Michel, Virginie, Miranda Chueca, Miguel Angel, Padalino, Barbara, Roberts, Helen, Spoolder, Hans, Ståhl, Karl, Velarde, Antonio, Viltrop, Arvo, Winckler, Christoph, Arzul, Isabelle, Dharmaveer, Shetty, Olesen, Niels Jørgen, Schiøtt, Morten, Sindre, Hilde, Stone, David, Vendramin, Niccoló, Antoniou, Sotiria‐eleni, Dhollander, Sofie, Karagianni, Anna Eleonora, Kero, Linnea Lindgren, Gnocchi, Marzia, Aznar, Inma, Barizzone, Fulvio, Munoz Guajardo, Irene Pilar, Efsa Panel On Animal Health And Welfare (ahaw), Nielsen, Søren Saxmose, Alvarez, Julio, Bicout, Dominique, Calistri, Paolo, Canali, Elisabetta, Drewe, Julian Ashley, Garin‐bastuji, Bruno, Gonzales Rojas, José Louis, Smith, Christian Gortazar, Herskin, Mette, Michel, Virginie, Miranda Chueca, Miguel Angel, Padalino, Barbara, Roberts, Helen, Spoolder, Hans, Ståhl, Karl, Velarde, Antonio, Viltrop, Arvo, Winckler, Christoph, Arzul, Isabelle, Dharmaveer, Shetty, Olesen, Niels Jørgen, Schiøtt, Morten, Sindre, Hilde, Stone, David, Vendramin, Niccoló, Antoniou, Sotiria‐eleni, Dhollander, Sofie, Karagianni, Anna Eleonora, Kero, Linnea Lindgren, Gnocchi, Marzia, Aznar, Inma, Barizzone, Fulvio, and Munoz Guajardo, Irene Pilar
- Abstract
Vector or reservoir species of five mollusc diseases listed in the Animal Health Law were identified, based on evidence generated through an extensive literature review, to support a possible updating of Regulation (EU) 2018/1882. Mollusc species on or in which Mikrocytos mackini, Perkinsus marinus, Bonamia exitiosa, Bonamia ostreae and Marteilia refringens were detected, in the field or during experiments, were classified as reservoir species with different levels of certainty depending on the diagnostic tests used. Where experimental evidence indicated transmission of the pathogen from a studied species to another known susceptible species, this studied species was classified as a vector species. Although the quantification of the risk of spread of the pathogens by the vectors or reservoir species was not part of the terms of reference, such risks do exist for the vector species, since transmission from infected vector species to susceptible species was proven. Where evidence for transmission from infected molluscs was not found, these were defined as reservoir. Nonetheless, the risk of the spread of the pathogens from infected reservoir species cannot be excluded. Evidence identifying conditions that may prevent transmission by vectors or reservoir mollusc species during transport was collected from scientific literature. It was concluded that it is very likely to almost certain (90–100%) that M. mackini, P. marinus, B. exitiosa B. ostreae and M. refringens will remain infective at any possible transport condition. Therefore, vector or reservoir species that may have been exposed to these pathogens in an affected area in the wild or at aquaculture establishments or through contaminated water supply can possibly transmit these pathogens. For transmission of M. refringens, the presence of an intermediate host, a copepod, is necessary.
- Published
- 2023
- Full Text
- View/download PDF
9. Extensive literature review on vectors and reservoirs of AHL‐listed pathogens of crustaceans
- Author
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European Food Safety Authority (efsa), Kero, Linnea Lindgren, Alemu, Selam, Alvarez, Julio, Arzul, Isabelle, Aznar, Inma, Caumette, Elea Bailly, Bicout, Dominique, Drewe, Julian Ashley, Dharmaveer, Shetty, Bastuji, Bruno Garin, Kohnle, Lisa, Meroc, Estelle, Chueca, Miguel Ángel Miranda, Olesen, Niels Jørgen, Roberts, Helen, Nielsen, Søren Saxmose, Schiøtt, Morten, Sindre, Helen, Stone, David, Rusina, Alessia, Vendramin, Niccolo, Dhollander, Sofie, European Food Safety Authority (efsa), Kero, Linnea Lindgren, Alemu, Selam, Alvarez, Julio, Arzul, Isabelle, Aznar, Inma, Caumette, Elea Bailly, Bicout, Dominique, Drewe, Julian Ashley, Dharmaveer, Shetty, Bastuji, Bruno Garin, Kohnle, Lisa, Meroc, Estelle, Chueca, Miguel Ángel Miranda, Olesen, Niels Jørgen, Roberts, Helen, Nielsen, Søren Saxmose, Schiøtt, Morten, Sindre, Helen, Stone, David, Rusina, Alessia, Vendramin, Niccolo, and Dhollander, Sofie
- Abstract
On request of the EU Commission, EFSA carried out an Extensive Literature Review (ELR) to provide a list of vector species or reservoirs species of pathogens of crustaceans, listed in Annex II to the AHL, aiming to update the Annex of Implementing Regulation (EU) 2018/1882. In this Technical Report, the detailed review protocol of the ELR and assessment of potential vector and reservoir species is described of the crustacean pathogens listed in Annex II to the AHL: Taura syndrome virus (TSV), Yellow head virus (YHV) or White spot syndrome virus (WSSV). In total 2,530 research publications were collected for abstract screening and from these, 110 were selected for further full text analysis. In the final data collection and assessment 34 relevant research publications were used for extracting information on vector and reservoir species of the above crustacean pathogens. The results for crustacean species for which scientific evidence indicates that a role as vector species or reservoir species is likely are presented as tables in the supplementary material of this report.
- Published
- 2023
- Full Text
- View/download PDF
10. Species which may act as vectors or reservoirs of diseases covered by the Animal Health Law: Listed pathogens of fish
- Author
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Efsa Panel On Animal Health And Welfare (ahaw), Nielsen, Søren Saxmose, Alvarez, Julio, Bicout, Dominique, Calistri, Paolo, Canali, Elisabetta, Drewe, Julian Ashley, Garin‐bastuji, Bruno, Gonzales Rojas, José Louis, Smith, Christian Gortazar, Herskin, Mette, Michel, Virginie, Miranda Chueca, Miguel Angel, Padalino, Barbara, Spoolder, Hans, Ståhl, Karl, Velarde, Antonio, Viltrop, Arvo, Winckler, Christoph, Arzul, Isabelle, Dharmaveer, Shetty, Olesen, Niels Jørgen, Schiøtt, Morten, Sindre, Hilde, Stone, David, Vendramin, Niccoló, Aires, Mariana, Asensio, Inmaculada Aznar, Antoniou, Sotiria‐eleni, Barizzone, Fulvio, Dhollander, Sofie, Gnocchi, Marzia, Karagianni, Anna Eleonora, Kero, Linnea Lindgren, Munoz Guajardo, Irene Pilar, Rusina, Alessia, Roberts, Helen, Efsa Panel On Animal Health And Welfare (ahaw), Nielsen, Søren Saxmose, Alvarez, Julio, Bicout, Dominique, Calistri, Paolo, Canali, Elisabetta, Drewe, Julian Ashley, Garin‐bastuji, Bruno, Gonzales Rojas, José Louis, Smith, Christian Gortazar, Herskin, Mette, Michel, Virginie, Miranda Chueca, Miguel Angel, Padalino, Barbara, Spoolder, Hans, Ståhl, Karl, Velarde, Antonio, Viltrop, Arvo, Winckler, Christoph, Arzul, Isabelle, Dharmaveer, Shetty, Olesen, Niels Jørgen, Schiøtt, Morten, Sindre, Hilde, Stone, David, Vendramin, Niccoló, Aires, Mariana, Asensio, Inmaculada Aznar, Antoniou, Sotiria‐eleni, Barizzone, Fulvio, Dhollander, Sofie, Gnocchi, Marzia, Karagianni, Anna Eleonora, Kero, Linnea Lindgren, Munoz Guajardo, Irene Pilar, Rusina, Alessia, and Roberts, Helen
- Abstract
Vector or reservoir species of five fish diseases listed in the Animal Health Law were identified, based on evidence generated through an extensive literature review (ELR), to support a possible updating of Regulation (EU) 2018/1882. Fish species on or in which highly polymorphic region-deleted infectious salmon anaemia virus (HPR∆ ISAV), Koi herpes virus (KHV), epizootic haematopoietic necrosis virus (EHNV), infectious haematopoietic necrosis virus (IHNV) or viral haemorrhagic septicaemia virus (VHSV) were detected, in the field or during experiments, were classified as reservoir species with different levels of certainty depending on the diagnostic tests used. Where experimental evidence indicated transmission of the pathogen from a studied species to another known susceptible species, the studied species was classified as a vector species. Although the quantification of the risk of spread of the pathogens by the vectors or reservoir species was not part of the terms or reference, such risks do exist for the vector species, since transmission from infected vector species to susceptible species was proven. Where evidence for transmission from infected fish was not found, these were defined as reservoirs. Nonetheless, the risk of the spread of the pathogens from infected reservoir species cannot be excluded. Evidence identifying conditions that may prevent transmission by vectors or reservoir fish species during transport was collected from scientific literature. For VHSV, IHNV or HPR∆ ISAV, it was concluded that under transport conditions at temperatures below 25°C, it is likely (66–90%) they will remain infective. Therefore, vector or reservoir species that may have been exposed to these pathogens in an affected area in the wild, aquaculture establishments or through water supply can possibly transmit VHSV, IHNV or HPR∆ ISAV into a non-affected area when transported at a temperature below 25°C. The conclusion was the same for EHN and KHV; however, they are likely
- Published
- 2023
- Full Text
- View/download PDF
11. Species which may act as vectors or reservoirs of diseases covered by the Animal Health Law: Listed pathogens of crustaceans
- Author
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Efsa Panel On Animal Health And Welfare (ahaw), Nielsen, Søren Saxmose, Alvarez, Julio, Bicout, Dominique, Calistri, Paolo, Canali, Elisabetta, Drewe, Julian Ashley, Garin‐bastuji, Bruno, Gonzales Rojas, José Louis, Smith, Christian Gortazar, Herskin, Mette, Michel, Virginie, Miranda Chueca, Miguel Angel, Padalino, Barbara, Spoolder, Hans, Ståhl, Karl, Velarde, Antonio, Viltrop, Arvo, Winckler, Christoph, Arzul, Isabelle, Dharmaveer, Shetty, Olesen, Niels Jørgen, Schiøtt, Morten, Sindre, Hilde, Stone, David, Vendramin, Niccoló, Alemu, Selam, Antoniou, Sotiria‐eleni, Aznar, Inma, Barizzone, Fulvio, Dhollander, Sofie, Gnocchi, Marzia, Karagianni, Anna Eleonora, Kero, Linnea Lindgren, Munoz Guajardo, Irene Pilar, Roberts, Helen, Efsa Panel On Animal Health And Welfare (ahaw), Nielsen, Søren Saxmose, Alvarez, Julio, Bicout, Dominique, Calistri, Paolo, Canali, Elisabetta, Drewe, Julian Ashley, Garin‐bastuji, Bruno, Gonzales Rojas, José Louis, Smith, Christian Gortazar, Herskin, Mette, Michel, Virginie, Miranda Chueca, Miguel Angel, Padalino, Barbara, Spoolder, Hans, Ståhl, Karl, Velarde, Antonio, Viltrop, Arvo, Winckler, Christoph, Arzul, Isabelle, Dharmaveer, Shetty, Olesen, Niels Jørgen, Schiøtt, Morten, Sindre, Hilde, Stone, David, Vendramin, Niccoló, Alemu, Selam, Antoniou, Sotiria‐eleni, Aznar, Inma, Barizzone, Fulvio, Dhollander, Sofie, Gnocchi, Marzia, Karagianni, Anna Eleonora, Kero, Linnea Lindgren, Munoz Guajardo, Irene Pilar, and Roberts, Helen
- Abstract
Vector or reservoir species of three diseases of crustaceans listed in the Animal Health Law were identified based on evidence generated through an extensive literature review, to support a possible updating of Regulation (EU) 2018/1882. Crustacean species on or in which Taura syndrome virus (TSV), Yellow head virus (YHV) or White spot syndrome virus (WSSV) were identified, in the field or during experiments, were classified as reservoir species with different levels of certainty depending on the diagnostic tests used. Where experimental evidence indicated transmission of the pathogen from a studied species to another known susceptible species, the studied species was classified as vector species. Although the quantification of the risk of spread of the pathogens by the vectors or reservoir species was not part of the terms of reference, such risks do exist for the vector species, since transmission from infected vector species to susceptible species was proven. Where evidence for transmission from infected crustaceans was not found, these were defined as reservoirs. Nonetheless, the risk of the spread of the pathogens from infected reservoir species cannot be excluded. Evidence identifying conditions that may prevent transmission by vectors during transport was collected from scientific literature. It was concluded that it is very likely to almost certain (90–100%) that WSSV, TSV and YHV will remain infective at any possible transport condition. Therefore, vector or reservoir species that may have been exposed to these pathogens in an affected area in the wild or aquaculture establishments or by water supply can possibly transmit WSSV, TSV and YHV.
- Published
- 2023
- Full Text
- View/download PDF
12. Extensive literature review on vectors and reservoirs of AHL‐listed pathogens of fish
- Author
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European Food Safety Authority (efsa), Gnocchi, Marzia, Aires, Mariana, Alvarez, Julio, Arzul, Isabelle, Aznar, Inma, Bicout, Dominique, Carmosino, Ilaria, Drewe, Julian Ashley, Dharmaveer, Shetty, Bastuji, Bruno Garin, Karagianni, Anna Eleonora, Chueca, Miguel Ángel Miranda, Olesen, Niels Jørgen, Palaiokostas, Christos, Roberts, Helen, Nielsen, Søren Saxmose, Schiøtt, Morten, Sindre, Helen, Stone, David, Rusina, Alessia, Vendramin, Niccolo, Dhollander, Sofie, European Food Safety Authority (efsa), Gnocchi, Marzia, Aires, Mariana, Alvarez, Julio, Arzul, Isabelle, Aznar, Inma, Bicout, Dominique, Carmosino, Ilaria, Drewe, Julian Ashley, Dharmaveer, Shetty, Bastuji, Bruno Garin, Karagianni, Anna Eleonora, Chueca, Miguel Ángel Miranda, Olesen, Niels Jørgen, Palaiokostas, Christos, Roberts, Helen, Nielsen, Søren Saxmose, Schiøtt, Morten, Sindre, Helen, Stone, David, Rusina, Alessia, Vendramin, Niccolo, and Dhollander, Sofie
- Abstract
On request of the EU Commission, EFSA carried out an Extensive Literature Review (ELR) to provide a list of vector species or reservoirs species of pathogens of crustaceans, listed in Annex II to the AHL, aiming to update the Annex of Implementing Regulation (EU) 2018/1882. In this Technical Report, the detailed review protocol of the ELR and assessment of potential vector and reservoir species is described of the crustacean pathogens listed in Annex II to the AHL: Taura syndrome virus (TSV), Yellow head virus (YHV) or White spot syndrome virus (WSSV). In total 2,530 research publications were collected for abstract screening and from these, 110 were selected for further full text analysis. In the final data collection and assessment 34 relevant research publications were used for extracting information on vector and reservoir species of the above crustacean pathogens. The results for crustacean species for which scientific evidence indicates that a role as vector species or reservoir species is likely are presented as tables in the supplementary material of this report.
- Published
- 2023
- Full Text
- View/download PDF
13. Characterization of a Novel Infectious Pancreatic Necrosis Virus (IPNV) from Genogroup 6 Identified in Sea Trout (Salmo trutta) from Lake Vänern, Sweden
- Author
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Persson, B. David, Schmidt, Jacob Günther, Hakhverdyan, Mikhayil, Leijon, Mikael, Olesen, Niels Jørgen, Axén, Charlotte, Persson, B. David, Schmidt, Jacob Günther, Hakhverdyan, Mikhayil, Leijon, Mikael, Olesen, Niels Jørgen, and Axén, Charlotte
- Abstract
In November 2016, infectious pancreatic necrosis virus (IPNV) was isolated from a broodstock female of landlocked sea trout (Salmo trutta) in Lake Vänern in Sweden. VP2 gene sequencing placed the IPNV isolate in genogroup 6, for which pathogenicity is largely unknown. Lake Vänern hosts landlocked sea trout and salmon populations that are endangered, and thus the introduction of new pathogens poses a major threat. In this study we characterized the novel isolate by conducting an infection trial on three salmonid species present in Lake Vänern, whole genome sequencing of the isolate, and prevalence studies in the wild sea trout and salmon in Lake Vänern. During the infection trial, the pathogenicity of the Swedish isolate was compared to that of a pathogenic genogroup 5 isolate. Dead or moribund fish were collected, pooled, and analyzed by cell culture to identify infected individuals. In the trial, the Swedish isolate was detected in fewer sample pools in all three species compared to the genogroup 5 isolate. In addition, the prevalence studies showed a low prevalence (0.2–0.5%) of the virus in the feral salmonids in Lake Vänern. Together the data suggest that the novel Swedish IPNV genogroup 6 isolate is only mildly pathogenic to salmonids.
- Published
- 2023
14. Decreased water temperature enhance Piscine orthoreovirus genotype 3 replication and severe heart pathology in experimentally infected rainbow trout
- Author
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Sørensen, Juliane, Cuenca, Argelia, Olsen, Anne Berit, Skovgaard, Kerstin, Iburg, Tine Moesgaard, Olesen, Niels Jørgen, Vendramin, Niccolò, Sørensen, Juliane, Cuenca, Argelia, Olsen, Anne Berit, Skovgaard, Kerstin, Iburg, Tine Moesgaard, Olesen, Niels Jørgen, and Vendramin, Niccolò
- Abstract
Piscine orthoreovirus genotype 3 (PRV-3) was first discovered in Denmark in 2017 in relation to disease outbreaks in rainbow trout (Oncorhynchus mykiss). While the virus appears to be widespread in farmed rainbow trout, disease outbreaks associated with detection of PRV-3 have only occurred in recirculating aquaculture systems, and has predominantly been observed during the winter months. To explore the possible effects of water temperature on PRV-3 infection in rainbow trout, an in vivo cohabitation trial was conducted at 5, 12, and 18°C. For each water temperature, a control tank containing mock-injected shedder fish and a tank with PRV-3 exposed fish were included. Samples were collected from all experimental groups every 2nd week post challenge (WPC) up until trial termination at 12 WPC. PRV-3 RNA load measured in heart tissue of cohabitants peaked at 6 WPC for animals maintained at 12 and 18°C, while it reached its peak at 12 WPC in fish maintained at 5°C. In addition to the time shift, significantly more virus was detected at the peak in fish maintained at 5°C compared to 12 and 18°C. In shedders, fish at 12 and 18°C cleared the infection considerably faster than the fish at 5°C: while shedders at 18 and 12°C had cleared most of the virus at 4 and 6 WPC, respectively, high virus load persisted in the shedders at 5°C until 12 WPC. Furthermore, a significant reduction in the hematocrit levels was observed in the cohabitants at 12°C in correlation with the peak in viremia at 6 WPC; no changes in hematocrit was observed at 18°C, while a non-significant reduction (due to large individual variation) trend was observed at cohabitants held at 5°C. Importantly, isg15 expression was positively correlated with PRV-3 virus load in all PRV-3 exposed groups. Immune gene expression analysis showed a distinct gene profile in PRV-3 exposed fish maintained at 5°C compared to 12 and 18°C. The immune markers mostly differentially expressed in the group at 5°C
- Published
- 2023
15. Viral Haemorrhagic Septicemia Virus (VHSV) Isolated from Atlantic Herring, Clupea harengus, Causes Mortality in Bath Challenge on Juvenile Herring
- Author
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Bergh, Øivind, Boutrup, Torsten Snogdal, Johansen, Renate, Skall, Helle Frank, Sandlund, Nina, Olesen, Niels Jørgen, Bergh, Øivind, Boutrup, Torsten Snogdal, Johansen, Renate, Skall, Helle Frank, Sandlund, Nina, and Olesen, Niels Jørgen
- Abstract
Viral hemorrhagic septicaemia virus (VHSV) has been demonstrated to cause high mortalities in a wide range of teleosts, farmed as well as wild. In Europe, VHSV of genotypes Ib, Id, II, and III have been detected in wild fish, including Atlantic herring Clupea harengus, but disease outbreaks have not been observed in Atlantic herring and the effects on wild stocks are not well documented. Here, we have tested two VHSV isolates from herring (genotypes Ib and III, from the western coasts of Norway and Denmark, respectively) in a challenge experiment with herring (mean weight 2.59 g, SD 0.71 g) caught on the west coast of Denmark. The Norwegian genotype Ib isolate (NO-F-CH/2009) showed an accumulated mortality of 47% compared to 6% mortality with the Danish genotype III isolate 4p168 and zero in the unchallenged control group. In both groups, we found positive rt-RT-PCR and positive immunohistochemistry of VHSV from days 6 and 8 onward. With both isolates, the organs mainly affected were the heart and kidney. The results demonstrate the susceptibility of Atlantic herring to VHSV, and both genotypes gave pathological findings in several organs. Genotype III showed a low mortality rate, and the importance of this genotype for herring is therefore not determined. Genotype Ib showed both high prevalence and mortality, and this genotype is therefore likely to have a negative effect on wild Atlantic herring stocks. Further examinations to determine how VHSV can affect wild Atlantic herring stocks are needed.
- Published
- 2023
16. Piscine orthoreovirus subtype 3 (PRV-3) causes heart inflammation in rainbow trout (Oncorhynchus mykiss)
- Author
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Vendramin, Niccoló, Kannimuthu, Dhamotharan, Olsen, Anne Berit, Cuenca, Argelia, Teige, Lena Hammerlund, Wessel, Øystein, Iburg, Tine Moesgaard, Dahle, Maria Krudtaa, Rimstad, Espen, and Olesen, Niels Jørgen
- Published
- 2019
- Full Text
- View/download PDF
17. Decreased water temperature enhance Piscine orthoreovirus genotype 3 replication and severe heart pathology in experimentally infected rainbow trout
- Author
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Sørensen, Juliane, primary, Cuenca, Argelia, additional, Olsen, Anne Berit, additional, Skovgaard, Kerstin, additional, Iburg, Tine Moesgaard, additional, Olesen, Niels Jørgen, additional, and Vendramin, Niccolò, additional
- Published
- 2023
- Full Text
- View/download PDF
18. Characterization of a Novel Infectious Pancreatic Necrosis Virus (IPNV) from Genogroup 6 Identified in Sea Trout (Salmo trutta) from Lake Vänern, Sweden
- Author
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Persson, B. David, primary, Schmidt, Jacob Günther, additional, Hakhverdyan, Mikhayil, additional, Leijon, Mikael, additional, Olesen, Niels Jørgen, additional, and Axén, Charlotte, additional
- Published
- 2023
- Full Text
- View/download PDF
19. Viral Haemorrhagic Septicemia Virus (VHSV) Isolated from Atlantic Herring, Clupea harengus, Causes Mortality in Bath Challenge on Juvenile Herring
- Author
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Bergh, Øivind, primary, Boutrup, Torsten Snogdal, additional, Johansen, Renate, additional, Skall, Helle Frank, additional, Sandlund, Nina, additional, and Olesen, Niels Jørgen, additional
- Published
- 2023
- Full Text
- View/download PDF
20. Extensive literature review on vectors and reservoirs of AHL‐listed pathogens of fish.
- Author
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Gnocchi, Marzia, Aires, Mariana, Alvarez, Julio, Arzul, Isabelle, Aznar, Inma, Bicout, Dominique, Carmosino, Ilaria, Drewe, Julian Ashley, Dharmaveer, Shetty, Bastuji, Bruno Garin, Karagianni, Anna Eleonora, Chueca, Miguel Ángel Miranda, Olesen, Niels Jørgen, Palaiokostas, Christos, Roberts, Helen, Nielsen, Søren Saxmose, Schiøtt, Morten, Sindre, Helen, Stone, David, and Rusina, Alessia
- Subjects
PATHOGENIC microorganisms - Abstract
On request of the EU Commission, EFSA carried out an Extensive Literature Review (ELR) to provide a list of vector species or reservoirs species of pathogens of crustaceans, listed in Annex II to the AHL, aiming to update the Annex of Implementing Regulation (EU) 2018/1882. In this Technical Report, the detailed review protocol of the ELR and assessment of potential vector and reservoir species is described of the crustacean pathogens listed in Annex II to the AHL: Taura syndrome virus (TSV), Yellow head virus (YHV) or White spot syndrome virus (WSSV). In total 2,530 research publications were collected for abstract screening and from these, 110 were selected for further full text analysis. In the final data collection and assessment 34 relevant research publications were used for extracting information on vector and reservoir species of the above crustacean pathogens. The results for crustacean species for which scientific evidence indicates that a role as vector species or reservoir species is likely are presented as tables in the supplementary material of this report. This publication is linked to the following EFSA Journal articles: http://onlinelibrary.wiley.com/doi/10.2903/j.efsa.2023.8172/full, http://onlinelibrary.wiley.com/doi/10.2903/j.efsa.2023.8173/full, http://onlinelibrary.wiley.com/doi/10.2903/j.efsa.2023.8174/full This publication is linked to the following EFSA Supporting Publications articles: http://onlinelibrary.wiley.com/doi/10.2903/sp.efsa.2023.EN-8122/full, http://onlinelibrary.wiley.com/doi/10.2903/sp.efsa.2023.EN-8124/full [ABSTRACT FROM AUTHOR]
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- 2023
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21. Extensive literature review on vectors and reservoirs of AHL‐listed pathogens of crustaceans.
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Kero, Linnea Lindgren, Alemu, Selam, Alvarez, Julio, Arzul, Isabelle, Aznar, Inma, Caumette, Elea Bailly, Bicout, Dominique, Drewe, Julian Ashley, Dharmaveer, Shetty, Bastuji, Bruno Garin, Kohnle, Lisa, Meroc, Estelle, Chueca, Miguel Ángel Miranda, Olesen, Niels Jørgen, Roberts, Helen, Nielsen, Søren Saxmose, Schiøtt, Morten, Sindre, Helen, Stone, David, and Rusina, Alessia
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PATHOGENIC microorganisms - Abstract
On request of the EU Commission, EFSA carried out an Extensive Literature Review (ELR) to provide a list of vector species or reservoirs species of pathogens of crustaceans, listed in Annex II to the AHL, aiming to update the Annex of Implementing Regulation (EU) 2018/1882. In this Technical Report, the detailed review protocol of the ELR and assessment of potential vector and reservoir species is described of the crustacean pathogens listed in Annex II to the AHL: Taura syndrome virus (TSV), Yellow head virus (YHV) or White spot syndrome virus (WSSV). In total 2,530 research publications were collected for abstract screening and from these, 110 were selected for further full text analysis. In the final data collection and assessment 34 relevant research publications were used for extracting information on vector and reservoir species of the above crustacean pathogens. The results for crustacean species for which scientific evidence indicates that a role as vector species or reservoir species is likely are presented as tables in the supplementary material of this report. This publication is linked to the following EFSA Journal articles: http://onlinelibrary.wiley.com/doi/10.2903/j.efsa.2023.8172/full, http://onlinelibrary.wiley.com/doi/10.2903/j.efsa.2023.8173/full, http://onlinelibrary.wiley.com/doi/10.2903/j.efsa.2023.8174/full This publication is linked to the following EFSA Supporting Publications articles: http://onlinelibrary.wiley.com/doi/10.2903/sp.efsa.2023.EN-8123/full, http://onlinelibrary.wiley.com/doi/10.2903/sp.efsa.2023.EN-8124/full [ABSTRACT FROM AUTHOR]
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- 2023
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22. Piscine orthoreovirus infection in Atlantic salmon (Salmo salar) protects against subsequent challenge with infectious hematopoietic necrosis virus (IHNV)
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Vendramin, Niccoló, Alencar, Anna Luiza Farias, Iburg, Tine Moesgaard, Dahle, Maria Krudtaa, Wessel, Øystein, Olsen, Anne Berit, Rimstad, Espen, and Olesen, Niels Jørgen
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- 2018
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23. Experimental infection trials with European North Atlantic ranavirus (Iridoviridae) isolated from lumpfish (Cyclopterus lumpus, L.)
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Scholz, Felix, primary, Vendramin, Niccolò, additional, Olesen, Niels Jørgen, additional, Cuenca, Argelia, additional, Moesgaard Iburg, Tine, additional, Mirimin, Luca, additional, O'Connor, Ian, additional, Ruane, Neil M., additional, Rodger, Hamish D., additional, and MacCarthy, Eugene, additional
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- 2022
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24. Lystfiskere kan være med til at mindske spredningen af fiskesygdommen IHN
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Iburg, Tine M., Olesen, Niels Jørgen, Iburg, Tine M., and Olesen, Niels Jørgen
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IHN-virus spredes gennem vand, ved flytning af inficerede æg og fisk eller ved kontakt med redskaber, der har været i direkte berøring med syge fisk eller vand med syge fisk.
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- 2022
25. Experimental infection trials with European North Atlantic ranavirus (Iridoviridae) isolated from lumpfish (Cyclopterus lumpus, L.)
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Scholz, Felix, Vendramin, Niccolò, Olesen, Niels Jørgen, Cuenca, Argelia, Moesgaard Iburg, Tine, Mirimin, Luca, O'Connor, Ian, Ruane, Neil M., Rodger, Hamish D., MacCarthy, Eugene, Scholz, Felix, Vendramin, Niccolò, Olesen, Niels Jørgen, Cuenca, Argelia, Moesgaard Iburg, Tine, Mirimin, Luca, O'Connor, Ian, Ruane, Neil M., Rodger, Hamish D., and MacCarthy, Eugene
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European North Atlantic ranavirus (ENARV, Iridoviridae), is a ranavirus species recently isolated from lumpfish (Cyclopterus lumpus, L.), which are used as cleaner fish in Atlantic salmon (Salmo salar) farming in Northern Europe. This study aimed to investigate (1) the virulence of ENARV isolates from Ireland, Iceland and the Faroe Islands to lumpfish; (2) horizontal transmission between lumpfish; and (3) virulence to Atlantic salmon parr. Lumpfish were challenged in a cohabitation model using intraperitoneally (IP) injected shedders, and naïve cohabitants. IP challenge with isolates from Iceland (1.9 × 107 TCID50 ml-1 ) and the Faroe Islands (5.9 × 107 TCID50 ml-1) reduced survival in lumpfish, associated with consistent pathological changes. IP challenge with the Irish strain (8.6 × 105 TCID50 ml-1) did not significantly reduce survival in lumpfish, but the lower challenge titre complicated interpretation. Horizontal transmission occurred in all strains tested, but no clinical impact was demonstrated in cohabitants. Salmon parr were challenged by IP injection with the Irish isolate, no virulence or virus replication were demonstrated. A ranavirus qPCR assay, previously validated for fish ranaviruses, was first used to detect ENARV in tissues of both in lumpfish and Atlantic salmon. This study provides the first data on the assessment of virulence of ENARV isolates to lumpfish and salmon, guidelines for the diagnosis of ENARV infection, and poses a basis for further investigations into virulence markers.
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- 2022
26. Technical challenges in the development of reverse genetics for a viral haemorrhagic septicaemia virus (VHSV) genotype Ib isolate: Alternative cell lines and general troubleshooting
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Alencar, Anna Luiza Farias, Cuenca, Argelia, Olesen, Niels Jørgen, and Rasmussen, Thomas Bruun
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- 2021
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27. Susceptibility testing of fish cell lines for virus isolation
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Ariel, Ellen, Skall, Helle Frank, and Olesen, Niels Jørgen
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- 2009
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28. Proficiency testing of national reference laboratories for fish diseases
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Ariel, Ellen, Nicolajsen, Nicole, Skall, Helle Frank, Andersen, Jens Strodl, Madsen, Sanne, and Olesen, Niels Jørgen
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- 2009
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29. Different survival of three populations of European sea bass (Dicentrarchus labrax) following challenge with two variants of nervous necrosis virus (NNV)
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Olesen, Niels Jørgen, Schmidt, Jacob Günther, Larsen, Cathrine Agnete, Barsøe, Sofie, Allal, François, Vergnet, Alain, Vandeputte, Marc, Olesen, Niels, Schmidt, Jacob, Larsen, Cathrine, Cuenca, Argelia, Vendramin, Niccolò, National Institute for Aquatic Resources, Technical Universtity of Denmark, MARine Biodiversity Exploitation and Conservation (UMR MARBEC), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER), Génétique Animale et Biologie Intégrative (GABI), AgroParisTech-Université Paris-Saclay-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), European Project: 652831, Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Institut de Recherche pour le Développement (IRD), Université Paris-Saclay-AgroParisTech-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), and Technical University of Denmark [Lyngby] (DTU)
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Fish farming ,Population ,Betanodavirus ,Sea bass ,Viral enchephalo- and retinopathy ,[SDV.SA.ZOO]Life Sciences [q-bio]/Agricultural sciences/Zootechny ,Neurological infection ,Aquatic Science ,Biology ,lcsh:Aquaculture. Fisheries. Angling ,Virus ,03 medical and health sciences ,Genetic resistance ,Grouper ,14. Life underwater ,SDG 14 - Life Below Water ,education ,030304 developmental biology ,Viral enchephalo-and retinopathy ,lcsh:SH1-691 ,0303 health sciences ,education.field_of_study ,Host-pathogen interaction ,04 agricultural and veterinary sciences ,biology.organism_classification ,Virology ,[SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics ,[SDV.SA.SPA]Life Sciences [q-bio]/Agricultural sciences/Animal production studies ,[SDV.SA.STP]Life Sciences [q-bio]/Agricultural sciences/Sciences and technics of fishery ,040102 fisheries ,0401 agriculture, forestry, and fisheries ,Animal Science and Zoology ,Dicentrarchus ,Nervous necrosis virus ,Nodaviridae - Abstract
International audience; Viral Nervous Necrosis (VNN, also called viral encephalo- and retinopathy (VER)), is a widespread disease of marine aquaculture caused by betanodavirus (or nervous necrosis virus - NNV), a segmented positive sense RNA virus, member of the nodaviridae family. VNN affects predominantly marine fish and cause significant losses to the Mediterranean fish farming industry, including the production of European sea bass (Dicentrarchus labrax). Of the four circulating genotypes of betanodavirus, red-spotted grouper NNV (RGNNV) and the reassortant geno-type red-spotted grouper/striped jack NNV (RG/SJNNV) are most prevalent in the Mediterranean. Inheritable resistance against VNN has been detected in sea bass, and selective breeding could be a mean to limit this untreatable disease. In the current study, we compare resistance to disease among three populations from the Atlantic Ocean (AT), Eastern Mediterranean (EM) and Western Mediterranean (WM), by challenge trials using both a highly pathogenic isolate of RGNNV and a lower pathogenic reassortant isolate of RG/SJNNV. The sur-vival of the three populations were modelled with a logistic regression, and the odds ratio (OR) of surviving was calculated. The challenge with RG/SJNNV reduced the odds of surviving three-fold (OR =0.29 [0.07-0.87]), whereas the challenge with RGNNV reduced the odds of surviving 100-fold (OR =0.01 [0.00-0.03]). Overall, the EM population had 3.32 (1.92–5.86) times higher odds of surviving the challenge than the AT and WM stocks. All survivors were harboring viral RNA in the brain, as demonstrated by RT-qPCR. However, viral RNA levels were in average lower in survivors from the EM population in both challenges, though only significantly lower in the challenge with RG/SJNNV (p
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- 2021
30. Red Skin Disease og andre ydre sygdomstegn på vildlaks i Danmark sommeren 2020 baseret på fotodokumentation
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M. Iburg, Tine, Sivebæk, Finn, Skov, Christian, Madsen, Lone, Vendramin, Niccolò, Schmidt, Jacob G., and Olesen, Niels Jørgen
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- 2021
31. Different survival of three populations of European sea bass (Dicentrarchus labrax) following challenge with two variants of nervous necrosis virus (NNV)
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Barsøe, Sofie, Allal, Francois, Vergnet, Alain, Vandeputte, Marc, Olesen, Niels Jørgen, Schmidt, Jacob Günther, Larsen, Cathrine Agnete, Cuenca, Argelia, Vendramin, Niccolò, Barsøe, Sofie, Allal, Francois, Vergnet, Alain, Vandeputte, Marc, Olesen, Niels Jørgen, Schmidt, Jacob Günther, Larsen, Cathrine Agnete, Cuenca, Argelia, and Vendramin, Niccolò
- Abstract
Viral Nervous Necrosis (VNN, also called viral encephalo- and retinopathy (VER)), is a widespread disease of marine aquaculture caused by betanodavirus (or nervous necrosis virus - NNV), a segmented positive sense RNA virus, member of the nodaviridae family. VNN affects predominantly marine fish and cause significant losses to the Mediterranean fish farming industry, including the production of European sea bass (Dicentrarchus labrax). Of the four circulating genotypes of betanodavirus, red-spotted grouper NNV (RGNNV) and the reassortant genotype red-spotted grouper/striped jack NNV (RG/SJNNV) are most prevalent in the Mediterranean. Inheritable resistance against VNN has been detected in sea bass, and selective breeding could be a mean to limit this untreatable disease. In the current study, we compare resistance to disease among three populations from the Atlantic Ocean (AT), Eastern Mediterranean (EM) and Western Mediterranean (WM), by challenge trials using both a highly pathogenic isolate of RGNNV and a lower pathogenic reassortant isolate of RG/SJNNV. The survival of the three populations were modelled with a logistic regression, and the odds ratio (OR) of surviving was calculated. The challenge with RG/SJNNV reduced the odds of surviving three-fold (OR = 0.29 [0.07-0.87]), whereas the challenge with RGNNV reduced the odds of surviving 100-fold (OR = 0.01 [0.00-0.03]). Overall, the EM population had 3.32 (1.92–5.86) times higher odds of surviving the challenge than the AT and WM stocks. All survivors were harboring viral RNA in the brain, as demonstrated by RT-qPCR. However, viral RNA levels were in average lower in survivors from the EM population in both challenges, though only significantly lower in the challenge with RG/SJNNV (p < 0.01). The survival results combined with the RT-qPCR results indicate that the EM sea bass population has a natural resistance to disease caused by RGNNV, possibly associated with limited viral entry into and/or replication in t
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- 2021
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32. Fiskesygdommen IHN er fundet i flere jyske dambrug og i en put and take-sø - men kan også være spred til Fyn og Sjælland
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Sivebæk, Finn, M. Iburg, Tine, Olesen, Niels Jørgen, Sivebæk, Finn, M. Iburg, Tine, and Olesen, Niels Jørgen
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Vær opmærksom på regler for flytning af fisk, desinfektion af udstyr m.v.
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- 2021
33. Comparative study of ranavirus isolates from cod (Gadus morhua) and turbot (Psetta maxima) with reference to other ranaviruses
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Ariel, Ellen, Holopainen, Riikka, Olesen, Niels Jørgen, and Tapiovaara, Hannele
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- 2010
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34. Modifications of the nucleoprotein of viral haemorrhagic septicaemia virus showed gain of virulence in intraperitoneally infected rainbow trout
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Alencar, Anna Luiza Farias, primary, Kwon, Se Ryun, additional, Rasmussen, Thomas Bruun, additional, Mérour, Emilie, additional, Olesen, Niels Jørgen, additional, and Cuenca, Argelia, additional
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- 2021
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35. Different survival of three populations of European sea bass (Dicentrarchus labrax) following challenge with two variants of nervous necrosis virus (NNV)
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Barsøe, Sofie, primary, Allal, François, additional, Vergnet, Alain, additional, Vandeputte, Marc, additional, Olesen, Niels Jørgen, additional, Schmidt, Jacob Günther, additional, Larsen, Cathrine Agnete, additional, Cuenca, Argelia, additional, and Vendramin, Niccolò, additional
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- 2021
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36. Situationsbeskrivelse af den danske fiskeri-, akvakultur og fiskeindustrisektor::Den Europæiske Hav- og Fiskerifond 2021-2027
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Nielsen, Max, Dalskov, Jørgen, Andersen, Jesper Levring, Nielsen, Rasmus, Koed, Anders, Pedersen, Jens Kjerulf, Rindorf, Anna, Vinther, Morten, Olesen, Niels Jørgen, Pedersen, Per Bovbjerg, Sveistrup, Uffe, Philips, Allan, Heltberg, Sine Olsson, Krestyanska, Mariya, Agerskov, Pernille Eva, and Olesen, Eva Ask
- Abstract
Denne udredning beskriver situationen i den danske fiskeri-, akvakultur- og fiskeindustrisektor i et historisk perspektiv, hvor udviklingen over det seneste årti analyseres. Endvidere identificeres sektorens styrker, svagheder, muligheder og trusler. Udredningen udgør en del af det faglige grundlag for udarbejdelsen af det nye danske program for den Europæiske Hav- og Fiskerifond for 2021-2027. Der fokuseres på erhvervsmuligheder og rammevilkår for sektorerne, men også biologiske, miljømæssige, økonomiske, sociale og regionale aspekter inddrages (IFRO). Inden for programmets første prioritet vurderes det, at forvaltningen med individuelt omsættelige kvoter og fartøjskvoteandele har givet og fremover forventes at give et stabilt grundlag for dansk fiskeri, hvor fangstkapacitet og ressourcegrundlag er afstemt. Brexit og en mulig udelukkelse fra fiskeri i britisk farvand udgør sammen med den dårlige tilstand af torskebestandene i Østersøen de væsentligste udfordringer. Der er udfordringer i fiskeriet i forhold til landingsforpligtelsen, hvor alle fisk under mindste referencestørrelse af kvoterede arter skal landes og afskrives på kvoten. I relation til landingsforpligtelsen er der desuden betydelige udfordringer i forhold til problematikken med choke species, hvor fiskeriet skal ophøre, når den første kvote er opfisket, og fiskeriet efter denne art forventes at ”kvæle” (choke) fiskeriet efter andre arter. For kystfiskeriet fastlægger en ny politisk aftale rammerne indtil 2022. Implementering af landingsforpligtelsen fortsætter, såvel som fiskeriet fortsat påvirkes af den dårlige miljøtilstand i flere danske havområder (IFRO). Inden for programmets prioritet 2 muliggør stigende global efterspørgsel efter fisk en mulighed for vækst, og overgangen til en ny regulering baseret på udledning af næringsstoffer kan understøtte en positiv udvikling i akvakulturerhvervet. Tilførsel af ekstra kvælstof samt en teknologiudvikling med en højere grad af recirkulering og vandrensning giver vækstmuligheder i dambrug. Dette er dog ikke tilfældet i havbrug, hvor der er indført et stop for nye tilladelser. Der forventes fortsat vækst inden for skaldyrsopdræt til konsum. Der ses også muligheder i at anvende tang og muslinger som et marint virkemiddel til reduktion af næringsstoffer i det marine miljø. Udviklingsmuligheder inkluderer endvidere et fortsat fokus på recirkuleringsteknologi, økologisk opdræt og ASC-certificering. Endelig har både opdrætsfisk og vildtfangede fisk et lavt CO2-aftryk per kilo i sammenligning med okse- og svinekød, hvorfor certificering af fisk som klimavenlig kan forbedre afsætningsmuligheder og give prispræmier (IFRO). Fiskeindustri og -engroshandel opererer på et verdensmarked, hvor konkurrence med lavtlønslande har ført til udflytning. Dette er de senere år dog imødegået af automatisering, såvel som dansk fiskeengroshandel er i fremgang. Sektoren er afhængig af frihandel og vil påvirkes af begrænsninger i handlen, f.eks. handelskrigen mellem USA og Kina, Ruslandssanktioner og Brexit, men omvendt også af EU’s indgåelse af bilaterale handelsaftaler. Udviklingsmuligheder inkluderer et fortsat fokus på produkter af høj kvalitet og høj værdi, et fortsat fokus på certificering af bæredygtighed og miljø og forøgelse af råvaregrundlaget fra den voksende akvakultursektor i Asien (IFRO). Inden for programmets prioritet 3 ses det, at fiskeri og fiskeindustri er af størst betydning i Nord- og Vestjylland, havbrug er lokaliseret i de indre farvande og dambrug spredt ud over Jylland. I de fiskeriafhængige områder understøtter tilskudsordningen FLAG lokalt drevne tiltag mod etablering og udvikling af små virksomheder, erhvervssamarbejde, innovation og diversificering af den marine økonomi. Udviklingsmuligheder i områderne inkluderer blå økonomi og aktiviteter inden for de marine sektorer. Der er også udviklingsmuligheder inden for blå bioøkonomi med muslinge- og tangopdræt samt udnyttelse af invasive arter, stillehavsøsters, sortmundet kutling, søstjerner og strandkrabber (IFRO). Inden for programmets prioritet 4 er der fokus på en integreret havforvaltning. Hvor forvaltningen tidligere foregik separat for hver sektor, er der de senere år blevet arbejdet på at integrere forvaltningen. Udgangspunktet er havstrategidirektivet og udarbejdelsen af havplaner, hvor udvikling af de enkelte marine sektorer kan ske i et positivt samspil med de øvrige sektorer. Dette kræver både nye data og ny viden om havmiljøet (IFRO).
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- 2020
37. Molecular basis for VHSV virulence in rainbow trout
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Panzarin, Valentina, Cuenca, Argelia, Toffan, Anna, Farias Alencar, Anna Luiza, Gastaldelli, Michele, Pascoli, Francesco, Abbadi, Miriam, Blanchard, Yannick, Ryder, David, Bremont, Michel, Morin, Thierry, Olesen, Niels Jørgen, Panzarin, Valentina, Cuenca, Argelia, Toffan, Anna, Farias Alencar, Anna Luiza, Gastaldelli, Michele, Pascoli, Francesco, Abbadi, Miriam, Blanchard, Yannick, Ryder, David, Bremont, Michel, Morin, Thierry, and Olesen, Niels Jørgen
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- 2020
38. Steps of the Replication Cycle of the Viral Haemorrhagic Septicaemia Virus (VHSV) Affecting Its Virulence on Fish
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López-Vázquez, Carmen, Bandín, Isabel, Panzarin, Valentina, Toffan, Anna, Cuenca, Argelia, Olesen, Niels Jørgen, Dopazo, Carlos P., López-Vázquez, Carmen, Bandín, Isabel, Panzarin, Valentina, Toffan, Anna, Cuenca, Argelia, Olesen, Niels Jørgen, and Dopazo, Carlos P.
- Abstract
The viral haemorrhagic septicaemia virus (VHSV), a single-stranded negative-sense RNA novirhabdovirus affecting a wide range of marine and freshwater fish species, is a main concern for European rainbow trout (Oncorhynchus mykiss) fish farmers. Its genome is constituted by six genes, codifying five structural and one nonstructural proteins. Many studies have been carried out to determine the participation of each gene in the VHSV virulence, most of them based on genome sequence analysis and/or reverse genetics to construct specific mutants and to evaluate their virulence phenotype. In the present study, we have used a different approach with a similar aim: hypothesizing that a failure in any step of the replication cycle can reduce the virulence in vivo, we studied in depth the in vitro replication of VHSV in different cell lines, using sets of strains from different origins, with high, low and moderate levels of virulence for fish. The results demonstrated that several steps in the viral replication cycle could affect VHSV virulence in fish, including adsorption, RNA synthesis and morphogenesis (including viral release). Notably, differences among strains in any step of the replication cycle were mostly strain-specific and reflected only in part the in vivo phenotype (high and low virulent). Our data, therefore, support the need for further studies aimed to construct completely avirulent VHSV recombinants targeting a combination of genes rather than a single one in order to study the mechanisms of genes interplay and their effect on viral phenotype in vitro and in vivo.
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- 2020
39. The Viral Hemorrhagic Septicemia Virus (VHSV) Markers of Virulence in Rainbow Trout (Oncorhynchus mykiss)
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Baillon, Laury, Mérour, Emilie, Cabon, Joëlle, Louboutin, Lénaïg, Vigouroux, Estelle, Farias Alencar, Anna Luiza, Cuenca, Argelia, Blanchard, Yannick, Olesen, Niels Jørgen, Panzarin, Valentina, Morin, Thierry, Brémont, Michel, Biacchesi, Stéphane, Baillon, Laury, Mérour, Emilie, Cabon, Joëlle, Louboutin, Lénaïg, Vigouroux, Estelle, Farias Alencar, Anna Luiza, Cuenca, Argelia, Blanchard, Yannick, Olesen, Niels Jørgen, Panzarin, Valentina, Morin, Thierry, Brémont, Michel, and Biacchesi, Stéphane
- Abstract
Viral hemorrhagic septicemia virus (VHSV) is a highly contagious virus leading to high mortality in a large panel of freshwater and marine fish species. VHSV isolates originating from marine fish show low pathogenicity in rainbow trout. The analysis of several nearly complete genome sequences from marine and freshwater isolates displaying varying levels of virulence in rainbow trout suggested that only a limited number of amino acid residues might be involved in regulating the level of virulence. Based on a recent analysis of 55 VHSV strains, which were entirely sequenced and phenotyped in vivo in rainbow trout, several amino acid changes putatively involved in virulence were identified. In the present study, these amino acid changes were introduced, alone or in combination, in a highly-virulent VHSV 23–75 genome backbone by reverse genetics. A total of 35 recombinant VHSV variants were recovered and characterized for virulence in trout by bath immersion. Results confirmed the important role of the NV protein (R116S) and highlighted a major contribution of the nucleoprotein N (K46G and A241E) in regulating virulence. Single amino acid changes in these two proteins drastically affect virus pathogenicity in rainbow trout. This is particularly intriguing for the N variant (K46G) which is unable to establish an active infection in the fins of infected trout, the main portal of entry of VHSV in this species, allowing further spread in its host. In addition, salmonid cell lines were selected to assess the kinetics of replication and cytopathic effect of recombinant VHSV and discriminate virulent and avirulent variants. In conclusion, three major virulence markers were identified in the NV and N proteins. These markers explain almost all phenotypes (92.7%) observed in trout for the 55 VHSV strains analyzed in the present study and herein used for the backward validation of virulence markers. The identification of VHSV specific virulence markers in this species is of
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- 2020
40. Emergence and Spread of Piscine orthoreovirus Genotype 3
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Sørensen, Juliane, Vendramin, Niccolò, Priess, Camilla, Kannimuthu, Dhamotharan, Henriksen, Niels Henrik, Moesgaard Iburg, Tine, Olesen, Niels Jørgen, Cuenca, Argelia, Sørensen, Juliane, Vendramin, Niccolò, Priess, Camilla, Kannimuthu, Dhamotharan, Henriksen, Niels Henrik, Moesgaard Iburg, Tine, Olesen, Niels Jørgen, and Cuenca, Argelia
- Abstract
Piscine orthoreovirus (PRV) is a relevant pathogen for salmonid aquaculture worldwide. In 2015, a new genotype of PRV (genotype 3, PRV-3) was discovered in Norway, and in 2017 PRV-3 was detected for first time in Denmark in association with complex disease cases in rainbow trout in recirculating aquaculture systems (RAS). To explore the epidemiology of PRV-3 in Denmark, a surveillance study was conducted in 2017 to 2019. Fifty-three farms, including both flow through and RAS, were screened for PRV-3. Of the farms examined, PRV-3 was detected in thirty-eight (71.7%), with the highest prevalence in grow-out farms. Notably, in Denmark disease outbreaks were only observed in RAS. Additionally, wild Atlantic salmon and brown trout populations were included in the screening, and PRV-3 was not detected in the three years where samples were obtained (2016, 2018, and 2019). Historical samples in the form of archived material at the Danish National Reference Laboratory for Fish Diseases were also tested for the presence of PRV-3, allowing us to establish that the virus has been present in Denmark at least since 1995. Sequence analyses of segment S1 and M2, as well as full genome analyses of selected isolates, did not reveal clear association between genetic makeup in these two segments and virulence in the form of disease outbreaks in the field.
- Published
- 2020
41. Antibiotic treatment alleviates red mark syndrome symptoms in rainbow trout (Oncorhynchus mykiss) and reduces load of Midichloria-like organism
- Author
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Schmidt, Jacob Günther, primary, Henriksen, Niels Henrik, additional, and Olesen, Niels Jørgen, additional
- Published
- 2021
- Full Text
- View/download PDF
42. Double trouble: could Ichthyophthirius multifiliis be a vehicle for the bacterium associated with red mark syndrome in rainbow trout, Oncorhynchus mykiss?
- Author
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Pasqualetti, Chiara, primary, Schmidt, Jacob Günther, additional, Cafiso, Alessandra, additional, Gammuto, Leandro, additional, Lanzoni, Olivia, additional, Sepulveda, Dagoberto, additional, Manfrin, Amedeo, additional, Benedetti Cecchi, Lisandro, additional, Olesen, Niels Jørgen, additional, Bazzocchi, Chiara, additional, and Petroni, Giulio, additional
- Published
- 2021
- Full Text
- View/download PDF
43. The Viral Hemorrhagic Septicemia Virus (VHSV) Markers of Virulence in Rainbow Trout (Oncorhynchus mykiss)
- Author
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Baillon, Laury, primary, Mérour, Emilie, additional, Cabon, Joëlle, additional, Louboutin, Lénaïg, additional, Vigouroux, Estelle, additional, Alencar, Anna Luiza Farias, additional, Cuenca, Argelia, additional, Blanchard, Yannick, additional, Olesen, Niels Jørgen, additional, Panzarin, Valentina, additional, Morin, Thierry, additional, Brémont, Michel, additional, and Biacchesi, Stéphane, additional
- Published
- 2020
- Full Text
- View/download PDF
44. Emergence and Spread of Piscine orthoreovirus Genotype 3
- Author
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Sørensen, Juliane, primary, Vendramin, Niccolò, additional, Priess, Camilla, additional, Kannimuthu, Dhamotharan, additional, Henriksen, Niels Henrik, additional, Iburg, Tine Moesgaard, additional, Olesen, Niels Jørgen, additional, and Cuenca, Argelia, additional
- Published
- 2020
- Full Text
- View/download PDF
45. Rainbow trout surviving infections of viral haemorrhagic septicemia virus (vhsv) show lasting antibodies to recombinant g protein fragments
- Author
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Gómez-Casado, E., Sanidad Animal, Gómez-Casado, E., Fregeneda Grandes, Juan Miguel, Olesen, Niels Jørgen, Lorenzen, Niels, Estepa Pérez, Amparo, Coll Morales, Julio, Encinas, Paloma, Gómez-Casado, E., Sanidad Animal, Gómez-Casado, E., Fregeneda Grandes, Juan Miguel, Olesen, Niels Jørgen, Lorenzen, Niels, Estepa Pérez, Amparo, Coll Morales, Julio, and Encinas, Paloma
- Abstract
Rainbow trout antibodies (Abs) binding to recombinant fragments (frgs) derived from the protein G of the viral haemorrhagic septicemia virus (VHSV)-07.71 strain, could be detected by ELISA (frg-ELISA) in sera from trout surviving laboratory-controlled infections. Abs were detected not only by using sera from trout infected with the homologous VHSV isolate but also with the VHSV-DK-201433 heterologous isolate, which had 13 amino acid changes. Sera from healthy trout and/or from trout surviving infectious haematopoietic necrosis virus (IHNV) infection, were used to calculate cut-off absorbances to differentiate negative from positive sera. Specific anti-VHSV Abs could then be detected by using any of the following frgs: frg11 (56-110), frg15 (65-250), frg16 (252-450) or G21-465. While high correlations were found among the ELISA values obtained with the different frgs, no correlations between any frg- ELISA and complement-dependent 50 % plaque neutralization test (PNT) titres could be demonstrated. Between 4 to 10 weeks after VHSV-infection, more trout sera were detected as positives by using heterologous frg-ELISA rather than homologous PNT. Furthermore, the percentage of positive sera detected by frg11-ELISA increased with time after infection to reach 100 %, while those detected by complement-dependent PNT decreased to 29.4 %, thus confirming that the lack of neutralising Abs does not mean the lack of any anti-VHSV Abs in survivor trout sera. Preliminary results with sera from field samples suggest that further refinements of the frg-ELISA could allow detection of anti-VHSV trout Abs in natural outbreaks caused by different heterologous VHSV isolates.The homologous frg-ELISA method could be useful to follow G immunization attempts during vaccine development and/or to best understand the fish Ab response during VHSV infections. The viral frgs approach might also be used with other fish species and/or viruses.
- Published
- 2019
46. Rainbow trout surviving infections of viral haemorrhagic septicemia virus (vhsv) show lasting antibodies to recombinant g protein fragments
- Author
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Sanidad Animal, Gómez-Casado, E., Fregeneda Grandes, Juan Miguel, Olesen, Niels Jørgen, Lorenzen, Niels, Estepa Pérez, Amparo, Coll Morales, Julio, Encinas, Paloma, Sanidad Animal, Gómez-Casado, E., Fregeneda Grandes, Juan Miguel, Olesen, Niels Jørgen, Lorenzen, Niels, Estepa Pérez, Amparo, Coll Morales, Julio, and Encinas, Paloma
- Abstract
Rainbow trout antibodies (Abs) binding to recombinant fragments (frgs) derived from the protein G of the viral haemorrhagic septicemia virus (VHSV)-07.71 strain, could be detected by ELISA (frg-ELISA) in sera from trout surviving laboratory-controlled infections. Abs were detected not only by using sera from trout infected with the homologous VHSV isolate but also with the VHSV-DK-201433 heterologous isolate, which had 13 amino acid changes. Sera from healthy trout and/or from trout surviving infectious haematopoietic necrosis virus (IHNV) infection, were used to calculate cut-off absorbances to differentiate negative from positive sera. Specific anti-VHSV Abs could then be detected by using any of the following frgs: frg11 (56-110), frg15 (65-250), frg16 (252-450) or G21-465. While high correlations were found among the ELISA values obtained with the different frgs, no correlations between any frg- ELISA and complement-dependent 50 % plaque neutralization test (PNT) titres could be demonstrated. Between 4 to 10 weeks after VHSV-infection, more trout sera were detected as positives by using heterologous frg-ELISA rather than homologous PNT. Furthermore, the percentage of positive sera detected by frg11-ELISA increased with time after infection to reach 100 %, while those detected by complement-dependent PNT decreased to 29.4 %, thus confirming that the lack of neutralising Abs does not mean the lack of any anti-VHSV Abs in survivor trout sera. Preliminary results with sera from field samples suggest that further refinements of the frg-ELISA could allow detection of anti-VHSV trout Abs in natural outbreaks caused by different heterologous VHSV isolates.The homologous frg-ELISA method could be useful to follow G immunization attempts during vaccine development and/or to best understand the fish Ab response during VHSV infections. The viral frgs approach might also be used with other fish species and/or viruses.
- Published
- 2019
47. Piscine orthoreovirus-3 (PRV-3), a new pathogen for farmed rainbow trout
- Author
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Dalsgaard, Johanne, Vendramin, Niccolò, Sørensen, Juliane, Cuenca, Argelia, Dahle, Maria, Olsen, Anne Berit, Iburg, Tine, Rimstad, Espen, Olesen, Niels Jørgen, Dalsgaard, Johanne, Vendramin, Niccolò, Sørensen, Juliane, Cuenca, Argelia, Dahle, Maria, Olsen, Anne Berit, Iburg, Tine, Rimstad, Espen, and Olesen, Niels Jørgen
- Published
- 2019
48. The susceptibility of silver crucian carp (Carassius auratus langsdorfii) to infection with koi herpesvirus (KHV)
- Author
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Kim, Hyoung Jun, Kwon, Se Ryun, Olesen, Niels Jørgen, Yuasa, Kei, Kim, Hyoung Jun, Kwon, Se Ryun, Olesen, Niels Jørgen, and Yuasa, Kei
- Abstract
Koi herpesvirus (KHV) infections cause high mortality in carp (Cyprinus carpio). This study compared the susceptibility of silver crucian carp (Carassius auratus langsdorfii), also called ginbuna, and koi carp to KHV infection. Silver crucian carp and koi carp were challenged with KHV by both intraperitoneal injection and immersion, respectively, and kept in tanks at 22°C. All KHV-exposed koi carp died within 14 days post-infection (dpi), whereas no clinics nor mortality was observed in the KHV-exposed silver crucian carp. KHV DNA was detected in both koi and silver crucian carp shortly after infection. At 7 dpi, the copy numbers of KHV genome were increased in koi carp but decreased in silver crucian carp. Using reverse transcriptase PCR, KHV mRNA was detected in koi carp but not in silver crucian carp. Cell cultivation on common carp brain (CCB) cell samples from koi carp caused KHV-associated cytopathic effects in CCB cells. Therefore, we concluded that KHV replicated in koi carp but not in silver crucian carp and that silver crucian carp is not susceptible to infection with KHV.
- Published
- 2019
49. Sequential Immunization With Heterologous Viruses Does Not Result in Attrition of the B Cell Memory in Rainbow Trout
- Author
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Navelsaker, Sofie, Magadan, Susana, Jouneau, Luc, Quillet, Edwige, Olesen, Niels Jørgen, Munang'andu, Hetron Mweemba, Boudinot, Pierre, Evensen, Øystein, Navelsaker, Sofie, Magadan, Susana, Jouneau, Luc, Quillet, Edwige, Olesen, Niels Jørgen, Munang'andu, Hetron Mweemba, Boudinot, Pierre, and Evensen, Øystein
- Abstract
Long-term immunity is of great importance for protection against pathogens and has been extensively studied in mammals. Successive heterologous infections can affect the maintenance of immune memory, inducing attrition of T memory cells and diminishing B cell mediated protection. In fish, the basis of immune memory and the mechanisms of immunization to heterologous pathogens remain poorly understood. We sequentially immunized isogenic rainbow trout with two immunologically distinct viruses, VHSV and IPNV, either with one virus only or in combination, and analyzed the antibody responses and repertoires. Neutralizing antibodies and ELISPOT did not reveal an effect of heterologous immunization. Using a consensus read sequencing approach that incorporates unique barcodes to each cDNA molecule, we focused on the diversity expressed by selected responding VH/C combinations. We identified both public and private responses against VHSV and/or IPNV in all groups of fish. In fish immunized with two viruses, we registered no significant reduction in the persistence of the response toward the primary immunization. Similarly, the response to the second immunization was not affected by a prior vaccination to the other virus. Our data suggest that heterologous immunization does not enforce attrition of pre-existing antibody producing cells, which may impair the protection afforded by multiple successive vaccinations. These observations are potentially important to improve vaccination strategies practiced in aquaculture.
- Published
- 2019
50. Skin immune response of rainbow trout (Oncorhynchus mykiss) experimentally exposed to the disease Red Mark Syndrome.
- Author
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Jørgensen, Louise von Gersdorff, Schmidt, Jacob Günther, Chen, Defang, Kania, Per Walter, Buchmann, Kurt, Olesen, Niels Jørgen, Jørgensen, Louise von Gersdorff, Schmidt, Jacob Günther, Chen, Defang, Kania, Per Walter, Buchmann, Kurt, and Olesen, Niels Jørgen
- Abstract
Red Mark Syndrome (RMS) is a skin disease reported from farmed rainbow trout. Since the turn of the millennium it has been spreading through Europe. RMS is probably a bacterial disease caused by a Midichloria-like organism (MLO). It is non-lethal and causes little obvious changes in appetite or behavior but results in red hyperaemic skin lesions, which may lead to economic losses due to downgrading. Here we transfer RMS to naïve specific pathogen free (SPF) fish by cohabitation with RMS-affected seeder fish. During disease development we characterize local cellular immune responses and regulations of immunologically relevant genes in skin of the cohabitants by immunohistochemistry and qPCR. Skin samples from SPF controls and cohabitants (areas with and without lesions) were taken at 18, 61, 82 and 97 days post-cohabitation. Gene expression results showed that lesions had a Th1-type profile, but with concurrent high expression levels of all three classes of immunoglobulins (IgD, IgM and IgT). The marked local infiltration of IgD + cells in the skin lesions as well as a highly up-regulated expression of the genes encoding sIgD and mIgD indicate that this immunoglobulin class plays an important role in skin immunity in general and in RMS pathology in particular. The co-occurrence of an apparent B cell dominated immune reaction with a Th1-type profile suggests that the local production of antibodies is independent of the classical Th2 pathway.
- Published
- 2019
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