62 results on '"Morales-Nebreda L"'
Search Results
2. Multi-dimensional Profiling of Alveolar T Cell Responses During Severe Pneumonia
- Author
-
Morales-Nebreda, L., primary, Ren, Z., additional, Markov, N.S., additional, Grant, R.A., additional, Helmin, K., additional, Malsin, E., additional, Jovisic, M., additional, Swaminathan, S., additional, Sichizya, L., additional, Kihshen, H., additional, Arnold, J., additional, Pickens, C., additional, Gao, C.A., additional, Abdala-Valencia, H., additional, Politanska, Y., additional, Budinger, G.S., additional, Misharin, A., additional, Wunderink, R.G., additional, and Singer, B.D., additional
- Published
- 2023
- Full Text
- View/download PDF
3. UHRF1 Is Necessary to Maintain Induced Treg Transcriptional Programs
- Author
-
Joudi, A.M., primary, Helmin, K., additional, Morales-Nebreda, L., additional, Torres Acosta, M.A., additional, Reyes Flores, C.P., additional, Weinberg, S.E., additional, and Singer, B.D., additional
- Published
- 2022
- Full Text
- View/download PDF
4. AMP-Activated Protein Kinase Is Required for Treg Cell Function During Microenvironmental Stress
- Author
-
Torres Acosta, M.A., primary, Weinberg, S., additional, Helmin, K., additional, Morales-Nebreda, L., additional, Reyes Flores, C.P., additional, Joudi, A.M., additional, and Singer, B.D., additional
- Published
- 2022
- Full Text
- View/download PDF
5. BCL-2 protects human and mouse Th17 cells from glucocorticoid-induced apoptosis
- Author
-
Banuelos, J., Shin, S., Cao, Y., Bochner, B. S., Morales-Nebreda, L., Budinger, G. R. S., Zhou, L., Li, S., Xin, J., Lingen, M. W., Dong, C., Schleimer, R. P., and Lu, N. Z.
- Published
- 2016
- Full Text
- View/download PDF
6. Stability of Induced Regulatory T Cells Is Independent of Initial TGF-β, IL-2, and T Cell Receptor Stimulation
- Author
-
Joudi, A.M., primary, Helmin, K., additional, Weinberg, S.E., additional, Morales-Nebreda, L., additional, Torres Acosta, M.A., additional, and Singer, B.D., additional
- Published
- 2021
- Full Text
- View/download PDF
7. Regulatory TCell-Specific Loss of Adenosine Monophosphate Protein Kinase (AMPK) Impairs Suppressive Function and Potentiates Immune Response to B16 Melanoma Tumors
- Author
-
Torres Acosta, M.A., primary, Weinberg, S., additional, Morales-Nebreda, L., additional, Helmin, K., additional, Joudi, A.M., additional, and Singer, B.D., additional
- Published
- 2021
- Full Text
- View/download PDF
8. Aging Imparts Cell-Autonomous Regulatory T Cell Dysfunction During Recovery from Viral Pneumonia
- Author
-
Morales-Nebreda, L., primary, Helmin, K., additional, Torres Acosta, M.A., additional, Joudi, A.M., additional, and Singer, B.D., additional
- Published
- 2021
- Full Text
- View/download PDF
9. Cell-Autonomous Aging in Treg Cells Determines Their Tissue-Reparative Function Following Influenza
- Author
-
Morales-Nebreda, L., primary, Helmin, K., additional, and Singer, B.D., additional
- Published
- 2020
- Full Text
- View/download PDF
10. Distinct Alveolar Treg Cell Transcriptional Programs Are Associated with Outcomes in Severe Viral Pneumonia
- Author
-
Malsin, E., primary, Morales-Nebreda, L., additional, Helmin, K., additional, Donnelly, H.K., additional, Borkowski, N., additional, Guzman, E.R., additional, Abbott, D.A., additional, Wunderink, R.G., additional, and Singer, B.D., additional
- Published
- 2020
- Full Text
- View/download PDF
11. Aging Causes Distinct Transcriptional and Epigenetic States in Pro-Resolving T Cells
- Author
-
Singer, B.D., primary, Helmin, K., additional, Morales-Nebreda, L., additional, and Niedernhofer, L., additional
- Published
- 2019
- Full Text
- View/download PDF
12. Aging Decreases Tissue Protective Function of Regulatory T Cells in the Lung
- Author
-
Morales-Nebreda, L., primary, Helmin, K., additional, and Singer, B.D., additional
- Published
- 2019
- Full Text
- View/download PDF
13. Distinctive evolution of alveolar T cell responses is associated with clinical outcomes in unvaccinated patients with SARS-CoV-2 pneumonia.
- Author
-
Markov NS, Ren Z, Senkow KJ, Grant RA, Gao CA, Malsin ES, Sichizya L, Kihshen H, Helmin KA, Jovisic M, Arnold JM, Pérez-Leonor XG, Abdala-Valencia H, Swaminathan S, Nwaezeapu J, Kang M, Rasmussen L, Ozer EA, Lorenzo-Redondo R, Hultquist JF, Simons LM, Rios-Guzman E, Misharin AV, Wunderink RG, Budinger GRS, Singer BD, and Morales-Nebreda L
- Subjects
- Humans, Male, Female, Middle Aged, Aged, Bronchoalveolar Lavage Fluid immunology, Adult, Signal Transduction immunology, Spike Glycoprotein, Coronavirus immunology, Interferons metabolism, T-Lymphocyte Subsets immunology, T-Lymphocyte Subsets metabolism, T-Lymphocytes immunology, Pulmonary Alveoli immunology, Pulmonary Alveoli pathology, COVID-19 immunology, SARS-CoV-2 immunology, NF-kappa B metabolism
- Abstract
The evolution of T cell molecular signatures in the distal lung of patients with severe pneumonia is understudied. Here, we analyzed T cell subsets in longitudinal bronchoalveolar lavage fluid samples from 273 patients with severe pneumonia, including unvaccinated patients infected with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) or with respiratory failure not linked to pneumonia. In patients with SARS-CoV-2 pneumonia, activation of interferon signaling pathways, low activation of the NF-κB pathway and preferential targeting of spike and nucleocapsid proteins early after intubation were associated with favorable outcomes, whereas loss of interferon signaling, activation of NF-κB-driven programs and specificity for the ORF1ab complex late in disease were associated with mortality. These results suggest that in patients with severe SARS-CoV-2 pneumonia, alveolar T cell interferon responses targeting structural SARS-CoV-2 proteins characterize individuals who recover, whereas responses against nonstructural proteins and activation of NF-κB are associated with poor outcomes., (© 2024. The Author(s), under exclusive licence to Springer Nature America, Inc.)
- Published
- 2024
- Full Text
- View/download PDF
14. FOXP3+ Regulatory T Cells Require TBET to Regulate Activated CD8+ T Cells During Recovery from Influenza Infection.
- Author
-
Mambetsariev N, Acosta MAT, Liu Q, Flores CPR, Joudi AM, Helmin KA, Gurkan JK, Steinert EM, Morales-Nebreda L, and Singer BD
- Abstract
FOXP3+ regulatory T (Treg) cells are necessary to coordinate resolution of lung inflammation and a return to homeostasis after respiratory viral infections, but the specific molecular requirements for these functions and the cell types governed by Treg cells remain unclear. This question holds significance as clinical trials of Treg cell transfer therapy for respiratory viral infection are being planned and executed. Here, we report causal experiments in mice determining that Treg cells are necessary to control the numbers of activated CD8+ T cells during recovery from influenza infection. Using a genetic strategy paired with adoptive transfer techniques, we determined that Treg cells require the transcription factor TBET to regulate these potentially pro-inflammatory CD8+ T cells. Surprisingly, we found that Treg cells are dispensable for the generation of CD8+ lung tissue resident-memory T (Trm) cells yet similarly influence the transcriptional programming of CD8+ Trm and activated T cells. Our study highlights the role of Treg cells in regulating the CD8+ T cell response during recovery from influenza infection., Competing Interests: Competing Interest Statement: NM is currently an employee and owns stock in Vertex Pharmaceuticals. BDS holds United States Patent No. US 10,905,706 B2, Compositions and Methods to Accelerate Resolution of Acute Lung Inflammation, and serves on the Scientific Advisory Board of Zoe Biosciences. The other authors have no competing interests to declare.
- Published
- 2024
- Full Text
- View/download PDF
15. Microbiology of Severe Community-Acquired Pneumonia and the Role of Rapid Molecular Techniques.
- Author
-
Pickens CI, Gao CA, Morales-Nebreda L, and Wunderink RG
- Subjects
- Humans, Streptococcus pneumoniae, Enterobacteriaceae, Staphylococcus aureus, Pneumonia diagnosis, Pneumonia microbiology, Viruses, Community-Acquired Infections diagnosis, Community-Acquired Infections microbiology
- Abstract
The microbiology of severe community acquired pneumonia (SCAP) has implications on management, clinical outcomes and public health policy. Therefore, knowledge of the etiologies of SCAP and methods to identify these microorganisms is key. Bacteria including Streptococcus pneumoniae, Staphylococcus aureus and Enterobacteriaceae continue to be important causes of SCAP. Viruses remain the most commonly identified etiology of SCAP. Atypical organisms are also important etiologies of SCAP and are critical to identify for public health. With the increased number of immunocompromised individuals, less common pathogens may also be found as the causative agent of SCAP. Traditional diagnostic tests, including semi-quantitative respiratory cultures, blood cultures and urinary antigens continue to hold an important role in the evaluation of patients with SCAP. Many of the limitations of the aforementioned tests are addressed by rapid, molecular diagnostic tests. Molecular diagnostics utilize culture-independent technology to identify species-specific genetic sequences. These tests are often semi-automated and provide results within hours, which provides an opportunity for expedient antibiotic stewardship. The existing literature suggests molecular diagnostic techniques may improve antibiotic stewardship in CAP, and future research should investigate optimal methods for implementation of these assays into clinical practice., Competing Interests: None declared., (Thieme. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF
16. The Third Annual Symposium of the Midwest Aging Consortium.
- Author
-
Keller A, Bai H, Budinger S, Eliazer S, Hansen M, Konopka AR, Morales-Nebreda L, Najt CP, Prahlad V, Victorelli S, Vorland CJ, Yuan R, Rhoads TW, and Mihaylova MM
- Subjects
- Humans, Inflammation, Lung, Geroscience, Aging physiology, Multiple Chronic Conditions
- Abstract
The geroscience hypothesis suggests that addressing the fundamental mechanisms driving aging biology will prevent or mitigate the onset of multiple chronic diseases, for which the largest risk factor is advanced age. Research that investigates the root causes of aging is therefore of critical importance given the rising healthcare burden attributable to age-related diseases. The third annual Midwest Aging Consortium symposium was convened as a showcase of such research performed by investigators from institutions across the Midwestern United States. This report summarizes the work presented during a virtual conference across topics in aging biology, including immune function in the lung-particularly timely given the Corona Virus Immune Disease-2019 pandemic-along with the role of metabolism and nutrient-regulated pathways in cellular function with age, the influence of senescence on stem cell function and inflammation, and our evolving understanding of the mechanisms underlying observation of sex dimorphism in aging-related outcomes. The symposium focused on early-stage and emerging investigators, while including keynote presentations from leaders in the biology of aging field, highlighting the diversity and strength of aging research in the Midwest., (© The Author(s) 2023. Published by Oxford University Press on behalf of The Gerontological Society of America. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
- Published
- 2024
- Full Text
- View/download PDF
17. A distinctive evolution of alveolar T cell responses is associated with clinical outcomes in unvaccinated patients with SARS-CoV-2 pneumonia.
- Author
-
Markov NS, Ren Z, Senkow KJ, Grant RA, Gao CA, Malsin ES, Sichizya L, Kihshen H, Helmin KA, Jovisic M, Arnold JM, Pérez-Leonor XG, Abdala-Valencia H, Swaminathan S, Nwaezeapu J, Kang M, Rasmussen L, Ozer EA, Lorenzo-Redondo R, Hultquist JF, Simons LM, Rios-Guzman E, Misharin AV, Wunderink RG, Budinger GRS, Singer BD, and Morales-Nebreda L
- Abstract
Pathogen clearance and resolution of inflammation in patients with pneumonia require an effective local T cell response. Nevertheless, local T cell activation may drive lung injury, particularly during prolonged episodes of respiratory failure characteristic of severe SARS-CoV-2 pneumonia. While T cell responses in the peripheral blood are well described, the evolution of T cell phenotypes and molecular signatures in the distal lung of patients with severe pneumonia caused by SARS-CoV-2 or other pathogens is understudied. Accordingly, we serially obtained 432 bronchoalveolar lavage fluid samples from 273 patients with severe pneumonia and respiratory failure, including 74 unvaccinated patients with COVID-19, and performed flow cytometry, transcriptional, and T cell receptor profiling on sorted CD8
+ and CD4+ T cell subsets. In patients with COVID-19 but not pneumonia secondary to other pathogens, we found that early and persistent enrichment in CD8+ and CD4+ T cell subsets correlated with survival to hospital discharge. Activation of interferon signaling pathways early after intubation for COVID-19 was associated with favorable outcomes, while activation of NF-κB-driven programs late in disease was associated with poor outcomes. Patients with SARS-CoV-2 pneumonia whose alveolar T cells preferentially targeted the Spike and Nucleocapsid proteins tended to experience more favorable outcomes than patients whose T cells predominantly targeted the ORF1ab polyprotein complex. These results suggest that in patients with severe SARS-CoV-2 pneumonia, alveolar T cell interferon responses targeting structural SARS-CoV-2 proteins characterize patients who recover, yet these responses progress to NF-κB activation against non-structural proteins in patients who go on to experience poor clinical outcomes., Competing Interests: Competing Interest Statement: BDS holds United States Patent No. US 10,905,706 B2, “Compositions and Methods to Accelerate Resolution of Acute Lung Inflammation”, and serves on the Scientific Advisory Board of Zoe Biosciences, outside of the submitted work. The other authors have no competing interests to declare.- Published
- 2023
- Full Text
- View/download PDF
18. AMP-activated protein kinase is necessary for Treg cell functional adaptation to microenvironmental stress.
- Author
-
Torres Acosta MA, Mambetsariev N, Reyes Flores CP, Helmin KA, Liu Q, Joudi AM, Morales-Nebreda L, Gurkan J, Cheng K, Abdala-Valencia H, Weinberg SE, and Singer BD
- Abstract
CD4+FOXP3+ regulatory T (Treg) cells maintain self-tolerance, suppress the immune response to cancer, and protect against tissue injury in the lung and other organs. Treg cells require mitochondrial metabolism to exert their function, but how Treg cells adapt their metabolic programs to sustain and optimize their function during an immune response occurring in a metabolically stressed microenvironment remains unclear. Here, we tested whether Treg cells require the energy homeostasis-maintaining enzyme AMP-activated protein kinase (AMPK) to adapt to metabolically aberrant microenvironments caused by malignancy or lung injury, finding that AMPK is dispensable for Treg cell immune-homeostatic function but is necessary for full Treg cell function in B16 melanoma tumors and during acute lung injury caused by influenza virus pneumonia. AMPK-deficient Treg cells had lower mitochondrial mass and exhibited an impaired ability to maximize aerobic respiration. Mechanistically, we found that AMPK regulates DNA methyltransferase 1 to promote transcriptional programs associated with mitochondrial function in the tumor microenvironment. In the lung during viral pneumonia, we found that AMPK sustains metabolic homeostasis and mitochondrial activity. Induction of DNA hypomethylation was sufficient to rescue mitochondrial mass in AMPK-deficient Treg cells, linking DNA methylation with AMPK function and mitochondrial metabolism. These results define AMPK as a determinant of Treg cell adaptation to metabolic stress and offer potential therapeutic targets in cancer and tissue injury., Competing Interests: Competing Interest Statement: NM is currently an employee and owns stock in Vertex Pharmaceuticals. BDS holds United States Patent No. US 10,905,706 B2, Compositions and Methods to Accelerate Resolution of Acute Lung Inflammation, and serves on the Scientific Advisory Board of Zoe Biosciences. The other authors have no competing interests to declare.
- Published
- 2023
- Full Text
- View/download PDF
19. Differential roles of regulatory T cells in acute respiratory infections.
- Author
-
Jovisic M, Mambetsariev N, Singer BD, and Morales-Nebreda L
- Subjects
- Humans, T-Lymphocytes, Regulatory, Lung, Inflammation, Forkhead Transcription Factors, Acute Lung Injury therapy, Pneumonia
- Abstract
Acute respiratory infections trigger an inflammatory immune response with the goal of pathogen clearance; however, overexuberant inflammation causes tissue damage and impairs pulmonary function. CD4+FOXP3+ regulatory T cells (Tregs) interact with cells of both the innate and the adaptive immune system to limit acute pulmonary inflammation and promote its resolution. Tregs also provide tissue protection and coordinate lung tissue repair, facilitating a return to homeostatic pulmonary function. Here, we review Treg-mediated modulation of the host response to respiratory pathogens, focusing on mechanisms underlying how Tregs promote resolution of inflammation and repair of acute lung injury. We also discuss potential strategies to harness and optimize Tregs as a cellular therapy for patients with severe acute respiratory infection and discuss open questions in the field.
- Published
- 2023
- Full Text
- View/download PDF
20. Alveolar Macrophages during Inflammation: A Balancing Act.
- Author
-
Poor TA and Morales-Nebreda L
- Subjects
- Humans, Macrophages, Alveolar immunology, Lung immunology, Inflammation immunology, Pneumonia, Bacterial, Sepsis
- Published
- 2023
- Full Text
- View/download PDF
21. Research Bronchoscopies in Critically Ill Research Participants: An Official American Thoracic Society Workshop Report.
- Author
-
Mikacenic C, Fussner LA, Bell J, Burnham EL, Chlan LL, Cook SK, Dickson RP, Almonor F, Luo F, Madan K, Morales-Nebreda L, Mould KJ, Simpson AJ, Singer BD, Stapleton RD, Wendt CH, and Files DC
- Subjects
- Humans, Bronchoalveolar Lavage, Dimercaprol, Patient Selection, Bronchoscopy, Critical Illness
- Abstract
Bronchoscopy for research purposes is a valuable tool to understand lung-specific biology in human participants. Despite published reports and active research protocols using this procedure in critically ill patients, no recent document encapsulates the important safety considerations and downstream applications of this procedure in this setting. The objectives were to identify safe practices for patient selection and protection of hospital staff, provide recommendations for sample procurement to standardize studies, and give guidance on sample preparation for novel research technologies. Seventeen international experts in the management of critically ill patients, bronchoscopy in clinical and research settings, and experience in patient-oriented clinical or translational research convened for a workshop. Review of relevant literature, expert presentations, and discussion generated the findings presented herein. The committee concludes that research bronchoscopy with bronchoalveolar lavage in critically ill patients on mechanical ventilation is valuable and safe in appropriately selected patients. This report includes recommendations on standardization of this procedure and prioritizes the reporting of sample management to produce more reproducible results between laboratories. This document serves as a resource to the community of researchers who endeavor to include bronchoscopy as part of their research protocols and highlights key considerations for the inclusion and safety of research participants.
- Published
- 2023
- Full Text
- View/download PDF
22. Clinical Features of COVID-19 and Differentiation from Other Causes of CAP.
- Author
-
Gao CA, Pickens CI, Morales-Nebreda L, and Wunderink RG
- Subjects
- Humans, Pandemics, COVID-19 complications, Pneumonia, Bacterial epidemiology, Community-Acquired Infections epidemiology
- Abstract
Community-acquired pneumonia (CAP) is a significant cause of morbidity and mortality, one of the most common reasons for infection-related death worldwide. Causes of CAP include numerous viral, bacterial, and fungal pathogens, though frequently no specific organism is found. Beginning in 2019, the COVID-19 pandemic has caused incredible morbidity and mortality. COVID-19 has many features typical of CAP such as fever, respiratory distress, and cough, and can be difficult to distinguish from other types of CAP. Here, we highlight unique clinical features of COVID-19 pneumonia such as olfactory and gustatory dysfunction, lymphopenia, and distinct imaging appearance., Competing Interests: None declared., (Thieme. All rights reserved.)
- Published
- 2023
- Full Text
- View/download PDF
23. Gearing up for battle: Harnessing adaptive T cell immunity against gram-negative pneumonia.
- Author
-
Gao CA, Morales-Nebreda L, and Pickens CI
- Subjects
- Anti-Bacterial Agents pharmacology, Drug Resistance, Multiple, Bacterial, Gram-Negative Bacteria, Humans, Microbial Sensitivity Tests, Pseudomonas aeruginosa, T-Lymphocytes, Acinetobacter baumannii, Pneumonia, Bacterial drug therapy
- Abstract
Pneumonia is one of the leading causes of morbidity and mortality worldwide and Gram-negative bacteria are a major cause of severe pneumonia. Despite advances in diagnosis and treatment, the rise of multidrug-resistant organisms and hypervirulent strains demonstrates that there will continue to be challenges with traditional treatment strategies using antibiotics. Hence, an alternative approach is to focus on the disease tolerance components that mediate immune resistance and enhance tissue resilience. Adaptive immunity plays a pivotal role in modulating these processes, thus affecting the incidence and severity of pneumonia. In this review, we focus on the adaptive T cell responses to pneumonia induced by Klebsiella pneumoniae , Pseudomonas aeruginosa , and Acinetobacter baumannii . We highlight key factors in these responses that have potential for therapeutic targeting, as well as the gaps in current knowledge to be focused on in future work., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Gao, Morales-Nebreda and Pickens.)
- Published
- 2022
- Full Text
- View/download PDF
24. Bacterial Superinfection Pneumonia in Patients Mechanically Ventilated for COVID-19 Pneumonia.
- Author
-
Pickens CO, Gao CA, Cuttica MJ, Smith SB, Pesce LL, Grant RA, Kang M, Morales-Nebreda L, Bavishi AA, Arnold JM, Pawlowski A, Qi C, Budinger GRS, Singer BD, and Wunderink RG
- Abstract
Rationale: Current guidelines recommend patients with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pneumonia receive empirical antibiotics for suspected bacterial superinfection on the basis of weak evidence. Rates of ventilator-associated pneumonia (VAP) in clinical trials of patients with SARS-CoV-2 pneumonia are unexpectedly low. Objectives: We conducted an observational single-center study to determine the prevalence and etiology of bacterial superinfection at the time of initial intubation and the incidence and etiology of subsequent bacterial VAP in patients with severe SARS-CoV-2 pneumonia. Methods: Bronchoscopic BAL fluid samples from all patients with SARS-CoV-2 pneumonia requiring mechanical ventilation were analyzed using quantitative cultures and a multiplex PCR panel. Actual antibiotic use was compared with guideline-recommended therapy. Measurements and Main Results: We analyzed 386 BAL samples from 179 patients with SARS-CoV-2 pneumonia requiring mechanical ventilation. Bacterial superinfection within 48 hours of intubation was detected in 21% of patients. Seventy-two patients (44.4%) developed at least one VAP episode (VAP incidence rate = 45.2/1,000 ventilator days); 15 (20.8%) initial VAPs were caused by difficult-to-treat pathogens. The clinical criteria did not distinguish between patients with or without bacterial superinfection. BAL-based management was associated with significantly reduced antibiotic use compared with guideline recommendations. Conclusions: In patients with SARS-CoV-2 pneumonia requiring mechanical ventilation, bacterial superinfection at the time of intubation occurs in <25% of patients. Guideline-based empirical antibiotic management at the time of intubation results in antibiotic overuse. Bacterial VAP developed in 44% of patients and could not be accurately identified in the absence of microbiologic analysis of BAL fluid.
- Published
- 2021
- Full Text
- View/download PDF
25. Comprehensive evaluation of bronchoalveolar lavage from patients with severe COVID-19 and correlation with clinical outcomes.
- Author
-
Gelarden I, Nguyen J, Gao J, Chen Q, Morales-Nebreda L, Wunderink R, Li L, Chmiel JS, Hrisinko M, Marszalek L, Momnani S, Patel P, Sumugod R, Chao Q, Jennings LJ, Zembower TR, Ji P, and Chen YH
- Subjects
- Adult, Aged, Aged, 80 and over, Bronchoalveolar Lavage Fluid cytology, Female, Humans, Male, Middle Aged, SARS-CoV-2, Bronchoalveolar Lavage Fluid immunology, CD4-Positive T-Lymphocytes immunology, CD8-Positive T-Lymphocytes immunology, COVID-19 immunology, Lung immunology
- Abstract
Information on bronchoalveolar lavage (BAL) in patients with COVID-19 is limited, and clinical correlation has not been reported. This study investigated the key features of BAL fluids from COVID-19 patients and assessed their clinical significance. A total of 320 BAL samples from 83 COVID-19 patients and 70 non-COVID-19 patients (27 patients with other respiratory viral infections) were evaluated, including cell count/differential, morphology, flow cytometric immunophenotyping, and immunohistochemistry. The findings were correlated with clinical outcomes. Compared to non-COVID-19 patients, BAL from COVID-19 patients was characterized by significant lymphocytosis (p < 0.001), in contrast to peripheral blood lymphopenia commonly observed in COVID-19 patients and the presence of atypical lymphocytes with plasmacytoid/plasmablastic features (p < 0.001). Flow cytometry and immunohistochemistry demonstrated that BAL lymphocytes, including plasmacytoid and plasmablastic cells, were composed predominantly of T cells with a mixture of CD4+ and CD8+ cells. Both populations had increased expression of T-cell activation markers, suggesting important roles of helper and cytotoxic T-cells in the immune response to SARS-CoV-2 infection in the lung. More importantly, BAL lymphocytosis was significantly associated with longer hospital stay (p < 0.05) and longer requirement for mechanical ventilation (p < 0.05), whereas the median atypical (activated) lymphocyte count was associated with shorter hospital stay (p < 0.05), shorter time on mechanical ventilation (p < 0.05) and improved survival. Our results indicate that BAL cellular analysis and morphologic findings provide additional important information for diagnostic and prognostic work-up, and potential new therapeutic strategies for patients with severe COVID-19., (Copyright © 2021 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
26. Aging imparts cell-autonomous dysfunction to regulatory T cells during recovery from influenza pneumonia.
- Author
-
Morales-Nebreda L, Helmin KA, Torres Acosta MA, Markov NS, Hu JY, Joudi AM, Piseaux-Aillon R, Abdala-Valencia H, Politanska Y, and Singer BD
- Subjects
- Age Factors, Aging metabolism, Animals, COVID-19 complications, COVID-19 metabolism, COVID-19 pathology, COVID-19 virology, Humans, Influenza, Human complications, Influenza, Human metabolism, Influenza, Human virology, Lung metabolism, Mice, Inbred C57BL, Pneumonia, Viral etiology, Pneumonia, Viral metabolism, Pneumonia, Viral virology, T-Lymphocytes, Regulatory metabolism, Mice, Aging physiology, Influenza A virus, Influenza, Human pathology, Lung pathology, Pneumonia, Viral pathology, SARS-CoV-2, T-Lymphocytes, Regulatory pathology
- Abstract
Regulatory T (Treg) cells orchestrate resolution and repair of acute lung inflammation and injury after viral pneumonia. Compared with younger patients, older individuals experience impaired recovery and worse clinical outcomes after severe viral infections, including influenza and SARS coronavirus 2 (SARS-CoV-2). Whether age is a key determinant of Treg cell prorepair function after lung injury remains unknown. Here, we showed that aging results in a cell-autonomous impairment of reparative Treg cell function after experimental influenza pneumonia. Transcriptional and DNA methylation profiling of sorted Treg cells provided insight into the mechanisms underlying their age-related dysfunction, with Treg cells from aged mice demonstrating both loss of reparative programs and gain of maladaptive programs. Strategies to restore youthful Treg cell functional programs could be leveraged as therapies to improve outcomes among older individuals with severe viral pneumonia.
- Published
- 2021
- Full Text
- View/download PDF
27. Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia.
- Author
-
Grant RA, Morales-Nebreda L, Markov NS, Swaminathan S, Querrey M, Guzman ER, Abbott DA, Donnelly HK, Donayre A, Goldberg IA, Klug ZM, Borkowski N, Lu Z, Kihshen H, Politanska Y, Sichizya L, Kang M, Shilatifard A, Qi C, Lomasney JW, Argento AC, Kruser JM, Malsin ES, Pickens CO, Smith SB, Walter JM, Pawlowski AE, Schneider D, Nannapaneni P, Abdala-Valencia H, Bharat A, Gottardi CJ, Budinger GRS, Misharin AV, Singer BD, and Wunderink RG
- Subjects
- Bronchoalveolar Lavage Fluid chemistry, Bronchoalveolar Lavage Fluid immunology, COVID-19 genetics, Cohort Studies, Humans, Interferon-gamma immunology, Interferons immunology, Interferons metabolism, Macrophages, Alveolar metabolism, Macrophages, Alveolar virology, Pneumonia, Viral genetics, RNA-Seq, SARS-CoV-2 immunology, Signal Transduction immunology, Single-Cell Analysis, T-Lymphocytes metabolism, Time Factors, COVID-19 immunology, COVID-19 virology, Macrophages, Alveolar immunology, Pneumonia, Viral immunology, Pneumonia, Viral virology, SARS-CoV-2 pathogenicity, T-Lymphocytes immunology
- Abstract
Some patients infected with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) develop severe pneumonia and acute respiratory distress syndrome
1 (ARDS). Distinct clinical features in these patients have led to speculation that the immune response to virus in the SARS-CoV-2-infected alveolus differs from that in other types of pneumonia2 . Here we investigate SARS-CoV-2 pathobiology by characterizing the immune response in the alveoli of patients infected with the virus. We collected bronchoalveolar lavage fluid samples from 88 patients with SARS-CoV-2-induced respiratory failure and 211 patients with known or suspected pneumonia from other pathogens, and analysed them using flow cytometry and bulk transcriptomic profiling. We performed single-cell RNA sequencing on 10 bronchoalveolar lavage fluid samples collected from patients with severe coronavirus disease 2019 (COVID-19) within 48 h of intubation. In the majority of patients with SARS-CoV-2 infection, the alveolar space was persistently enriched in T cells and monocytes. Bulk and single-cell transcriptomic profiling suggested that SARS-CoV-2 infects alveolar macrophages, which in turn respond by producing T cell chemoattractants. These T cells produce interferon-γ to induce inflammatory cytokine release from alveolar macrophages and further promote T cell activation. Collectively, our results suggest that SARS-CoV-2 causes a slowly unfolding, spatially limited alveolitis in which alveolar macrophages containing SARS-CoV-2 and T cells form a positive feedback loop that drives persistent alveolar inflammation.- Published
- 2021
- Full Text
- View/download PDF
28. Bacterial superinfection pneumonia in SARS-CoV-2 respiratory failure.
- Author
-
Pickens CO, Gao CA, Cuttica M, Smith SB, Pesce L, Grant R, Kang M, Morales-Nebreda L, Bavishi AA, Arnold J, Pawlowski A, Qi C, Budinger GS, Singer BD, and Wunderink RG
- Abstract
Background: Severe community-acquired pneumonia secondary to SARS-CoV-2 is a leading cause of death. Current guidelines recommend patients with SARS-CoV-2 pneumonia receive empirical antibiotic therapy for suspected bacterial superinfection, but little evidence supports these recommendations., Methods: We obtained bronchoscopic bronchoalveolar lavage (BAL) samples from patients with SARS-CoV-2 pneumonia requiring mechanical ventilation. We analyzed BAL samples with multiplex PCR and quantitative culture to determine the prevalence of superinfecting pathogens at the time of intubation and identify episodes of ventilator-associated pneumonia (VAP) over the course of mechanical ventilation. We compared antibiotic use with guideline-recommended care., Results: The 179 ventilated patients with severe SARS-CoV-2 pneumonia discharged from our hospital by June 30, 2020 were analyzed. 162 (90.5%) patients had at least one BAL procedure; 133 (74.3%) within 48 hours after intubation and 112 (62.6%) had at least one subsequent BAL during their hospitalization. A superinfecting pathogen was identified within 48 hours of intubation in 28/133 (21%) patients, most commonly methicillin-sensitive Staphylococcus aureus or Streptococcus species (21/28, 75%). BAL-based treatment reduced antibiotic use compared with guideline-recommended care. 72 patients (44.4%) developed at least one VAP episode. Only 15/72 (20.8%) of initial VAPs were attributable to multidrug-resistant pathogens. The incidence rate of VAP was 45.2/1000 ventilator days., Conclusions: With use of sensitive diagnostic tools, bacterial superinfection at the time of intubation is infrequent in patients with severe SARS-CoV-2 pneumonia. Treatment based on current guidelines would result in substantial antibiotic overuse. The incidence rate of VAP in ventilated patients with SARS-CoV-2 pneumonia are higher than historically reported.
- Published
- 2021
- Full Text
- View/download PDF
29. Maintenance DNA methylation is essential for regulatory T cell development and stability of suppressive function.
- Author
-
Helmin KA, Morales-Nebreda L, Torres Acosta MA, Anekalla KR, Chen SY, Abdala-Valencia H, Politanska Y, Cheresh P, Akbarpour M, Steinert EM, Weinberg SE, and Singer BD
- Subjects
- Animals, CCAAT-Enhancer-Binding Proteins genetics, Forkhead Transcription Factors genetics, Mice, Mice, Transgenic, Ubiquitin-Protein Ligases genetics, CCAAT-Enhancer-Binding Proteins immunology, DNA Methylation immunology, Forkhead Transcription Factors immunology, T-Lymphocytes, Regulatory immunology, Ubiquitin-Protein Ligases immunology
- Abstract
Tregs require Foxp3 expression and induction of a specific DNA hypomethylation signature during development, after which Tregs persist as a self-renewing population that regulates immune system activation. Whether maintenance DNA methylation is required for Treg lineage development and stability and how methylation patterns are maintained during lineage self-renewal remain unclear. Here, we demonstrate that the epigenetic regulator ubiquitin-like with plant homeodomain and RING finger domains 1 (Uhrf1) is essential for maintenance of methyl-DNA marks that stabilize Treg cellular identity by repressing effector T cell transcriptional programs. Constitutive and induced deficiency of Uhrf1 within Foxp3+ cells resulted in global yet nonuniform loss of DNA methylation, derepression of inflammatory transcriptional programs, destabilization of the Treg lineage, and spontaneous inflammation. These findings support a paradigm in which maintenance DNA methylation is required in distinct regions of the Treg genome for both lineage establishment and stability of identity and suppressive function.
- Published
- 2020
- Full Text
- View/download PDF
30. Harnessing Machine Learning to Improve Patient Outcomes in Pulmonary and Critical Care Medicine.
- Author
-
Levenson AR, Morales-Nebreda L, Alexander MJ, and Schroedl CJ
- Published
- 2020
- Full Text
- View/download PDF
31. Alveolitis in severe SARS-CoV-2 pneumonia is driven by self-sustaining circuits between infected alveolar macrophages and T cells.
- Author
-
Grant RA, Morales-Nebreda L, Markov NS, Swaminathan S, Guzman ER, Abbott DA, Donnelly HK, Donayre A, Goldberg IA, Klug ZM, Borkowski N, Lu Z, Kihshen H, Politanska Y, Sichizya L, Kang M, Shilatifard A, Qi C, Argento AC, Kruser JM, Malsin ES, Pickens CO, Smith S, Walter JM, Pawlowski AE, Schneider D, Nannapaneni P, Abdala-Valencia H, Bharat A, Gottardi CJ, Budinger GS, Misharin AV, Singer BD, and Wunderink RG
- Abstract
Some patients infected with Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) develop severe pneumonia and the acute respiratory distress syndrome (ARDS) [1]. Distinct clinical features in these patients have led to speculation that the immune response to virus in the SARS-CoV-2-infected alveolus differs from other types of pneumonia [2]. We collected bronchoalveolar lavage fluid samples from 86 patients with SARS-CoV-2-induced respiratory failure and 252 patients with known or suspected pneumonia from other pathogens and subjected them to flow cytometry and bulk transcriptomic profiling. We performed single cell RNA-Seq in 5 bronchoalveolar lavage fluid samples collected from patients with severe COVID-19 within 48 hours of intubation. In the majority of patients with SARS-CoV-2 infection at the onset of mechanical ventilation, the alveolar space is persistently enriched in alveolar macrophages and T cells without neutrophilia. Bulk and single cell transcriptomic profiling suggest SARS-CoV-2 infects alveolar macrophages that respond by recruiting T cells. These T cells release interferon-gamma to induce inflammatory cytokine release from alveolar macrophages and further promote T cell recruitment. Our results suggest SARS-CoV-2 causes a slowly unfolding, spatially-limited alveolitis in which alveolar macrophages harboring SARS-CoV-2 transcripts and T cells form a positive feedback loop that drives progressive alveolar inflammation. This manuscript is accompanied by an online resource: https://www.nupulmonary.org/covid-19/., One Sentence Summary: SARS-CoV-2-infected alveolar macrophages form positive feedback loops with T cells in patients with severe COVID-19.
- Published
- 2020
- Full Text
- View/download PDF
32. CoRESTed development of regulatory T cells.
- Author
-
Morales-Nebreda L, Helmin KA, and Singer BD
- Subjects
- Epigenesis, Genetic, Transcription Factors, Transplantation Tolerance, Co-Repressor Proteins, T-Lymphocytes, Regulatory
- Abstract
Tregs require specific epigenetic signatures to induce and maintain their suppressive function in the context of inflammation and cancer surveillance. In this issue of the JCI, Xiong and colleagues identify a critical role for the epigenetic repressor REST corepressor 1 (CoREST) in promoting Treg suppressive transcriptional and functional programs. Pharmacologic inhibition and genetic loss of CoREST in Tregs impaired organ allograft tolerance and unleashed antitumor immunity via epigenetic activation of effector T cell programs. We propose that exploiting epigenetic control mechanisms will further the translation of Treg-based therapeutics to target inflammatory and malignant disorders.
- Published
- 2020
- Full Text
- View/download PDF
33. Linear ubiquitin assembly complex regulates lung epithelial-driven responses during influenza infection.
- Author
-
Brazee PL, Morales-Nebreda L, Magnani ND, Garcia JG, Misharin AV, Ridge KM, Budinger GRS, Iwai K, Dada LA, and Sznajder JI
- Subjects
- A549 Cells, Animals, Dogs, Humans, Influenza A Virus, H1N1 Subtype genetics, Interferon Regulatory Factor-1 genetics, Interferon Regulatory Factor-1 immunology, Lung pathology, Lung virology, Madin Darby Canine Kidney Cells, Mice, Mice, Knockout, Multiprotein Complexes genetics, Orthomyxoviridae Infections genetics, Orthomyxoviridae Infections pathology, Pneumonia, Viral genetics, Pneumonia, Viral pathology, Respiratory Mucosa pathology, Respiratory Mucosa virology, Ubiquitin-Protein Ligases deficiency, Ubiquitin-Protein Ligases immunology, Influenza A Virus, H1N1 Subtype immunology, Lung immunology, Multiprotein Complexes immunology, Orthomyxoviridae Infections immunology, Pneumonia, Viral immunology, Respiratory Mucosa immunology
- Abstract
Influenza A virus (IAV) is among the most common causes of pneumonia-related death worldwide. Pulmonary epithelial cells are the primary target for viral infection and replication and respond by releasing inflammatory mediators that recruit immune cells to mount the host response. Severe lung injury and death during IAV infection result from an exuberant host inflammatory response. The linear ubiquitin assembly complex (LUBAC), composed of SHARPIN, HOIL-1L, and HOIP, is a critical regulator of NF-κB-dependent inflammation. Using mice with lung epithelial-specific deletions of HOIL-1L or HOIP in a model of IAV infection, we provided evidence that, while a reduction in the inflammatory response was beneficial, ablation of the LUBAC-dependent lung epithelial-driven response worsened lung injury and increased mortality. Moreover, we described a mechanism for the upregulation of HOIL-1L in infected and noninfected cells triggered by the activation of type I IFN receptor and mediated by IRF1, which was maladaptive and contributed to hyperinflammation. Thus, we propose that lung epithelial LUBAC acts as a molecular rheostat that could be selectively targeted to modulate the immune response in patients with severe IAV-induced pneumonia.
- Published
- 2020
- Full Text
- View/download PDF
34. Headed in the Wrong Direction: Chronic and Acute Derangements in Pulmonary Blood Flow Distribution in a Patient with Severe Pulmonary Vein Stenosis.
- Author
-
Morales-Nebreda L, Chung CS, Agrawal R, Yeldandi AV, Singer BD, Bharat A, McCrimmon DR, and Walter JM
- Subjects
- Atrial Fibrillation therapy, Humans, Magnetic Resonance Angiography, Male, Middle Aged, Positive-Pressure Respiration, Pulmonary Veno-Occlusive Disease etiology, Pulmonary Veno-Occlusive Disease therapy, Stenosis, Pulmonary Vein etiology, Stenosis, Pulmonary Vein therapy, Catheter Ablation adverse effects, Pulmonary Veno-Occlusive Disease diagnosis, Stenosis, Pulmonary Vein diagnosis
- Published
- 2019
- Full Text
- View/download PDF
35. Metformin Targets Mitochondrial Electron Transport to Reduce Air-Pollution-Induced Thrombosis.
- Author
-
Soberanes S, Misharin AV, Jairaman A, Morales-Nebreda L, McQuattie-Pimentel AC, Cho T, Hamanaka RB, Meliton AY, Reyfman PA, Walter JM, Chen CI, Chi M, Chiu S, Gonzalez-Gonzalez FJ, Antalek M, Abdala-Valencia H, Chiarella SE, Sun KA, Woods PS, Ghio AJ, Jain M, Perlman H, Ridge KM, Morimoto RI, Sznajder JI, Balch WE, Bhorade SM, Bharat A, Prakriya M, Chandel NS, Mutlu GM, and Budinger GRS
- Published
- 2019
- Full Text
- View/download PDF
36. DNA methylation as a transcriptional regulator of the immune system.
- Author
-
Morales-Nebreda L, McLafferty FS, and Singer BD
- Subjects
- Autoimmune Diseases genetics, Cell Differentiation, Cell Lineage, DNA (Cytosine-5-)-Methyltransferase 1 antagonists & inhibitors, Host-Pathogen Interactions, Humans, T-Lymphocytes, Regulatory immunology, Transcription, Genetic, DNA Methylation, Gene Expression Regulation, Immune System physiology
- Abstract
DNA methylation is a dynamic epigenetic modification with a prominent role in determining mammalian cell development, lineage identity, and transcriptional regulation. Primarily linked to gene silencing, novel technologies have expanded the ability to measure DNA methylation on a genome-wide scale and uncover context-dependent regulatory roles. The immune system is a prototypic model for studying how DNA methylation patterning modulates cell type- and stimulus-specific transcriptional programs. Preservation of host defense and organ homeostasis depends on fine-tuned epigenetic mechanisms controlling myeloid and lymphoid cell differentiation and function, which shape innate and adaptive immune responses. Dysregulation of these processes can lead to human immune system pathology as seen in blood malignancies, infections, and autoimmune diseases. Identification of distinct epigenotypes linked to pathogenesis carries the potential to validate therapeutic targets in disease prevention and management., (Copyright © 2018. Published by Elsevier Inc.)
- Published
- 2019
- Full Text
- View/download PDF
37. Influenza A Virus Infection Induces Muscle Wasting via IL-6 Regulation of the E3 Ubiquitin Ligase Atrogin-1.
- Author
-
Radigan KA, Nicholson TT, Welch LC, Chi M, Amarelle L, Angulo M, Shigemura M, Shigemura A, Runyan CE, Morales-Nebreda L, Perlman H, Ceco E, Lecuona E, Dada LA, Misharin AV, Mutlu GM, Sznajder JI, and Budinger GRS
- Subjects
- Animals, Cells, Cultured, Disease Models, Animal, Forkhead Box Protein O3 metabolism, Humans, Interleukin-6 genetics, Janus Kinases metabolism, Male, Mice, Mice, Inbred C57BL, Mice, Knockout, Muscle Proteins genetics, SKP Cullin F-Box Protein Ligases genetics, STAT Transcription Factors metabolism, Signal Transduction, Influenza A virus physiology, Influenza, Human immunology, Interleukin-6 metabolism, Lung physiology, Muscle Proteins metabolism, Muscles pathology, Orthomyxoviridae Infections immunology, Pneumonia, Viral immunology, SKP Cullin F-Box Protein Ligases metabolism, Wasting Syndrome immunology
- Abstract
Muscle dysfunction is common in patients with adult respiratory distress syndrome and is associated with morbidity that can persist for years after discharge. In a mouse model of severe influenza A pneumonia, we found the proinflammatory cytokine IL-6 was necessary for the development of muscle dysfunction. Treatment with a Food and Drug Administration-approved Ab antagonist to the IL-6R (tocilizumab) attenuated the severity of influenza A-induced muscle dysfunction. In cultured myotubes, IL-6 promoted muscle degradation via JAK/STAT, FOXO3a, and atrogin-1 upregulation. Consistent with these findings, atrogin-1
+/- and atrogin-1-/- mice had attenuated muscle dysfunction following influenza infection. Our data suggest that inflammatory endocrine signals originating from the injured lung activate signaling pathways in the muscle that induce dysfunction. Inhibiting these pathways may limit morbidity in patients with influenza A pneumonia and adult respiratory distress syndrome., (Copyright © 2019 by The American Association of Immunologists, Inc.)- Published
- 2019
- Full Text
- View/download PDF
38. Systemic lupus erythematosus-associated diffuse alveolar hemorrhage: A case report and review of the literature.
- Author
-
Morales-Nebreda L, Alakija O, Ferguson KT, and Singer BD
- Abstract
Systemic lupus erythematosus is associated with numerous pleuropulmonary complications. Although uncommon, diffuse alveolar hemorrhage represents a life-threatening cause of acute respiratory failure among patients with lupus. Here, we present a 24-year-old woman with a history of lupus who developed hemoptysis and respiratory failure associated with diffuse radiographic infiltrates and anemia. Bronchoscopy confirmed diffuse alveolar hemorrhage. She was managed with supportive care, plasmapheresis, and immunosuppressive pharmacotherapy leading to sustained resolution of her pulmonary hemorrhage and respiratory failure. We then review the available literature on the pathophysiology and management of lupus-associated diffuse alveolar hemorrhage, which centers on supportive care, reversal of coagulopathy, and immunosuppressive measures., Competing Interests: Conflicts of interest and source of funding: The authors declare that they have no conflicts of interest with the contents of this article. BDS was supported by NIH award K08HL128867 and the Francis Family Foundation’s Parker B. Francis Research Opportunity Award. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health or the Francis Family Foundation.
- Published
- 2018
39. Monocyte-derived alveolar macrophages drive lung fibrosis and persist in the lung over the life span.
- Author
-
Misharin AV, Morales-Nebreda L, Reyfman PA, Cuda CM, Walter JM, McQuattie-Pimentel AC, Chen CI, Anekalla KR, Joshi N, Williams KJN, Abdala-Valencia H, Yacoub TJ, Chi M, Chiu S, Gonzalez-Gonzalez FJ, Gates K, Lam AP, Nicholson TT, Homan PJ, Soberanes S, Dominguez S, Morgan VK, Saber R, Shaffer A, Hinchcliff M, Marshall SA, Bharat A, Berdnikovs S, Bhorade SM, Bartom ET, Morimoto RI, Balch WE, Sznajder JI, Chandel NS, Mutlu GM, Jain M, Gottardi CJ, Singer BD, Ridge KM, Bagheri N, Shilatifard A, Budinger GRS, and Perlman H
- Subjects
- Animals, Cell Differentiation, Fibrosis, Humans, Lung cytology, Mice, Monocytes pathology, Lung pathology, Macrophages, Alveolar pathology
- Abstract
Little is known about the relative importance of monocyte and tissue-resident macrophages in the development of lung fibrosis. We show that specific genetic deletion of monocyte-derived alveolar macrophages after their recruitment to the lung ameliorated lung fibrosis, whereas tissue-resident alveolar macrophages did not contribute to fibrosis. Using transcriptomic profiling of flow-sorted cells, we found that monocyte to alveolar macrophage differentiation unfolds continuously over the course of fibrosis and its resolution. During the fibrotic phase, monocyte-derived alveolar macrophages differ significantly from tissue-resident alveolar macrophages in their expression of profibrotic genes. A population of monocyte-derived alveolar macrophages persisted in the lung for one year after the resolution of fibrosis, where they became increasingly similar to tissue-resident alveolar macrophages. Human homologues of profibrotic genes expressed by mouse monocyte-derived alveolar macrophages during fibrosis were up-regulated in human alveolar macrophages from fibrotic compared with normal lungs. Our findings suggest that selectively targeting alveolar macrophage differentiation within the lung may ameliorate fibrosis without the adverse consequences associated with global monocyte or tissue-resident alveolar macrophage depletion., (© 2017 Misharin et al.)
- Published
- 2017
- Full Text
- View/download PDF
40. SIRT3 deficiency promotes lung fibrosis by augmenting alveolar epithelial cell mitochondrial DNA damage and apoptosis.
- Author
-
Jablonski RP, Kim SJ, Cheresh P, Williams DB, Morales-Nebreda L, Cheng Y, Yeldandi A, Bhorade S, Pardo A, Selman M, Ridge K, Gius D, Budinger GRS, and Kamp DW
- Subjects
- A549 Cells, Animals, Antibiotics, Antineoplastic toxicity, Asbestos toxicity, Bleomycin toxicity, DNA Damage, Humans, Mice, Mice, Knockout, Oxidants toxicity, Pulmonary Fibrosis metabolism, Sirtuin 3 genetics, Alveolar Epithelial Cells pathology, Apoptosis physiology, DNA, Mitochondrial physiology, Pulmonary Fibrosis etiology, Sirtuin 3 metabolism
- Abstract
Alveolar epithelial cell (AEC) mitochondrial dysfunction and apoptosis are important in idiopathic pulmonary fibrosis and asbestosis. Sirtuin 3 (SIRT3) detoxifies mitochondrial reactive oxygen species, in part, by deacetylating manganese superoxide dismutase (MnSOD) and mitochondrial 8-oxoguanine DNA glycosylase. We reasoned that SIRT3 deficiency occurs in fibrotic lungs and thereby augments AEC mtDNA damage and apoptosis. Human lungs were assessed by using immunohistochemistry for SIRT3 activity via acetylated MnSOD
K68 Murine AEC SIRT3 and cleaved caspase-9 (CC-9) expression were assayed by immunoblotting with or without SIRT3 enforced expression or silencing. mtDNA damage was measured by using quantitative PCR and apoptosis via ELISA. Pulmonary fibrosis after asbestos or bleomycin exposure was evaluated in 129SJ/wild-type and SIRT3-knockout mice ( Sirt3-/- ) by using fibrosis scoring and lung collagen levels. Idiopathic pulmonary fibrosis lung alveolar type II cells have increased MnSODK68 acetylation compared with controls. Asbestos and H2 O2 diminished AEC SIRT3 protein expression and increased mitochondrial protein acetylation, including MnSODK68 SIRT3 enforced expression reduced oxidant-induced AEC OGG1K338/341 acetylation, mtDNA damage, and apoptosis, whereas SIRT3 silencing promoted these effects. Asbestos- or bleomycin-induced lung fibrosis, AEC mtDNA damage, and apoptosis in wild-type mice were amplified in Sirt3-/- animals. These data suggest a novel role for SIRT3 deficiency in mediating AEC mtDNA damage, apoptosis, and lung fibrosis.-Jablonski, R. P., Kim, S.-J., Cheresh, P., Williams, D. B., Morales-Nebreda, L., Cheng, Y., Yeldandi, A., Bhorade, S., Pardo, A., Selman, M., Ridge, K., Gius, D., Budinger, G. R. S., Kamp, D. W. SIRT3 deficiency promotes lung fibrosis by augmenting alveolar epithelial cell mitochondrial DNA damage and apoptosis., (© FASEB.)- Published
- 2017
- Full Text
- View/download PDF
41. Mitochondrial catalase overexpressed transgenic mice are protected against lung fibrosis in part via preventing alveolar epithelial cell mitochondrial DNA damage.
- Author
-
Kim SJ, Cheresh P, Jablonski RP, Morales-Nebreda L, Cheng Y, Hogan E, Yeldandi A, Chi M, Piseaux R, Ridge K, Michael Hart C, Chandel N, Scott Budinger GR, and Kamp DW
- Subjects
- Administration, Inhalation, Animals, Asbestos, Bleomycin, Caspase 3 genetics, Caspase 3 metabolism, Catalase metabolism, Collagen antagonists & inhibitors, Collagen genetics, Collagen metabolism, DNA, Mitochondrial chemistry, DNA, Mitochondrial metabolism, Epithelial Cells enzymology, Epithelial Cells pathology, Gene Expression, Gene Expression Regulation, Intercellular Signaling Peptides and Proteins, Intubation, Intratracheal, Mice, Mice, Transgenic, Mitochondria enzymology, Mitochondria pathology, Mitochondrial Proteins metabolism, Organometallic Compounds pharmacology, Peptides genetics, Peptides metabolism, Pulmonary Alveoli enzymology, Pulmonary Alveoli pathology, Pulmonary Fibrosis chemically induced, Pulmonary Fibrosis genetics, Pulmonary Fibrosis pathology, Pulmonary Surfactant-Associated Protein C, Reactive Oxygen Species antagonists & inhibitors, Reactive Oxygen Species metabolism, Salicylates pharmacology, Transgenes, Catalase genetics, DNA, Mitochondrial drug effects, Epithelial Cells drug effects, Mitochondria drug effects, Mitochondrial Proteins genetics, Pulmonary Alveoli drug effects, Pulmonary Fibrosis prevention & control
- Abstract
Rationale: Alveolar epithelial cell (AEC) injury and mitochondrial dysfunction are important in the development of lung fibrosis. Our group has shown that in the asbestos exposed lung, the generation of mitochondrial reactive oxygen species (ROS) in AEC mediate mitochondrial DNA (mtDNA) damage and apoptosis which are necessary for lung fibrosis. These data suggest that mitochondrial-targeted antioxidants should ameliorate asbestos-induced lung., Objective: To determine whether transgenic mice that express mitochondrial-targeted catalase (MCAT) have reduced lung fibrosis following exposure to asbestos or bleomycin and, if so, whether this occurs in association with reduced AEC mtDNA damage and apoptosis., Methods: Crocidolite asbestos (100µg/50µL), TiO
2 (negative control), bleomycin (0.025 units/50µL), or PBS was instilled intratracheally in 8-10 week-old wild-type (WT - C57Bl/6J) or MCAT mice. The lungs were harvested at 21d. Lung fibrosis was quantified by collagen levels (Sircol) and lung fibrosis scores. AEC apoptosis was assessed by cleaved caspase-3 (CC-3)/Surfactant protein C (SFTPC) immunohistochemistry (IHC) and semi-quantitative analysis. AEC (primary AT2 cells from WT and MCAT mice and MLE-12 cells) mtDNA damage was assessed by a quantitative PCR-based assay, apoptosis was assessed by DNA fragmentation, and ROS production was assessed by a Mito-Sox assay., Results: Compared to WT, crocidolite-exposed MCAT mice exhibit reduced pulmonary fibrosis as measured by lung collagen levels and lung fibrosis score. The protective effects in MCAT mice were accompanied by reduced AEC mtDNA damage and apoptosis. Similar findings were noted following bleomycin exposure. Euk-134, a mitochondrial SOD/catalase mimetic, attenuated MLE-12 cell DNA damage and apoptosis. Finally, compared to WT, asbestos-induced MCAT AT2 cell ROS production was reduced., Conclusions: Our finding that MCAT mice have reduced pulmonary fibrosis, AEC mtDNA damage and apoptosis following exposure to asbestos or bleomycin suggests an important role for AEC mitochondrial H2 O2 -induced mtDNA damage in promoting lung fibrosis. We reason that strategies aimed at limiting AEC mtDNA damage arising from excess mitochondrial H2 O2 production may be a novel therapeutic target for mitigating pulmonary fibrosis., (Published by Elsevier Inc.)- Published
- 2016
- Full Text
- View/download PDF
42. Tenascin-C drives persistence of organ fibrosis.
- Author
-
Bhattacharyya S, Wang W, Morales-Nebreda L, Feng G, Wu M, Zhou X, Lafyatis R, Lee J, Hinchcliff M, Feghali-Bostwick C, Lakota K, Budinger GR, Raparia K, Tamaki Z, and Varga J
- Subjects
- Adult, Aged, Animals, Case-Control Studies, Cell Differentiation, Cells, Cultured, Collagen drug effects, Disease Models, Animal, Female, Fibrosis genetics, Fibrosis metabolism, Gene Expression Regulation, Humans, Lung drug effects, Male, Mice, Middle Aged, Myofibroblasts drug effects, Scleroderma, Systemic metabolism, Scleroderma, Systemic pathology, Signal Transduction, Skin pathology, Tenascin metabolism, Tenascin pharmacology, Toll-Like Receptor 4 metabolism, Up-Regulation, Collagen genetics, Fibroblasts metabolism, Lung pathology, Scleroderma, Systemic genetics, Skin metabolism, Tenascin genetics
- Abstract
The factors responsible for maintaining persistent organ fibrosis in systemic sclerosis (SSc) are not known but emerging evidence implicates toll-like receptors (TLRs) in the pathogenesis of SSc. Here we show the expression, mechanism of action and pathogenic role of endogenous TLR activators in skin from patients with SSc, skin fibroblasts, and in mouse models of organ fibrosis. Levels of tenascin-C are elevated in SSc skin biopsy samples, and serum and SSc fibroblasts, and in fibrotic skin tissues from mice. Exogenous tenascin-C stimulates collagen gene expression and myofibroblast transformation via TLR4 signalling. Mice lacking tenascin-C show attenuation of skin and lung fibrosis, and accelerated fibrosis resolution. These results identify tenascin-C as an endogenous danger signal that is upregulated in SSc and drives TLR4-dependent fibroblast activation, and by its persistence impedes fibrosis resolution. Disrupting this fibrosis amplification loop might be a viable strategy for the treatment of SSc.
- Published
- 2016
- Full Text
- View/download PDF
43. Macrophage-epithelial paracrine crosstalk inhibits lung edema clearance during influenza infection.
- Author
-
Peteranderl C, Morales-Nebreda L, Selvakumar B, Lecuona E, Vadász I, Morty RE, Schmoldt C, Bespalowa J, Wolff T, Pleschka S, Mayer K, Gattenloehner S, Fink L, Lohmeyer J, Seeger W, Sznajder JI, Mutlu GM, Budinger GR, and Herold S
- Subjects
- Animals, Humans, Macrophages, Alveolar pathology, Mice, Orthomyxoviridae Infections pathology, Pulmonary Alveoli pathology, Pulmonary Edema pathology, Respiratory Distress Syndrome immunology, Respiratory Distress Syndrome pathology, Respiratory Mucosa pathology, Sodium-Potassium-Exchanging ATPase immunology, Influenza A virus immunology, Interferon Type I immunology, Macrophages, Alveolar immunology, Orthomyxoviridae Infections immunology, Paracrine Communication immunology, Pulmonary Edema immunology, Respiratory Mucosa immunology, TNF-Related Apoptosis-Inducing Ligand immunology
- Abstract
Influenza A viruses (IAV) can cause lung injury and acute respiratory distress syndrome (ARDS), which is characterized by accumulation of excessive fluid (edema) in the alveolar airspaces and leads to hypoxemia and death if not corrected. Clearance of excess edema fluid is driven mostly by the alveolar epithelial Na,K-ATPase and is crucial for survival of patients with ARDS. We therefore investigated whether IAV infection alters Na,K-ATPase expression and function in alveolar epithelial cells (AECs) and the ability of the lung to clear edema. IAV infection reduced Na,K-ATPase in the plasma membrane of human and murine AECs and in distal lung epithelium of infected mice. Moreover, induced Na,K-ATPase improved alveolar fluid clearance (AFC) in IAV-infected mice. We identified a paracrine cell communication network between infected and noninfected AECs and alveolar macrophages that leads to decreased alveolar epithelial Na,K-ATPase function and plasma membrane abundance and inhibition of AFC. We determined that the IAV-induced reduction of Na,K-ATPase is mediated by a host signaling pathway that involves epithelial type I IFN and an IFN-dependent elevation of macrophage TNF-related apoptosis-inducing ligand (TRAIL). Our data reveal that interruption of this cellular crosstalk improves edema resolution, which is of biologic and clinical importance to patients with IAV-induced lung injury.
- Published
- 2016
- Full Text
- View/download PDF
44. Flow Cytometry Reveals Similarities Between Lung Macrophages in Humans and Mice.
- Author
-
Bharat A, Bhorade SM, Morales-Nebreda L, McQuattie-Pimentel AC, Soberanes S, Ridge K, DeCamp MM, Mestan KK, Perlman H, Budinger GR, and Misharin AV
- Subjects
- Animals, Biomarkers metabolism, Bronchoalveolar Lavage Fluid chemistry, Bronchoalveolar Lavage Fluid immunology, Case-Control Studies, Disease Models, Animal, Humans, Lung Diseases immunology, Lung Diseases pathology, Macrophages, Alveolar immunology, Macrophages, Alveolar pathology, Mice, Phenotype, Species Specificity, Cell Separation methods, Flow Cytometry, Immunophenotyping methods, Lung Diseases metabolism, Macrophages, Alveolar metabolism
- Published
- 2016
- Full Text
- View/download PDF
45. Regulation of allergic lung inflammation by endothelial cell transglutaminase 2.
- Author
-
Soveg F, Abdala-Valencia H, Campbell J, Morales-Nebreda L, Mutlu GM, and Cook-Mills JM
- Subjects
- Animals, Asthma pathology, Chemokines metabolism, Eosinophils immunology, Female, Lung immunology, Lung pathology, Male, Mice, Inbred C57BL, Mice, Transgenic, Protein Glutamine gamma Glutamyltransferase 2, Asthma enzymology, Endothelial Cells enzymology, GTP-Binding Proteins physiology, Lung enzymology, Transglutaminases physiology
- Abstract
Tissue transglutaminase 2 (TG2) is an enzyme with multiple functions, including catalysis of serotonin conjugation to proteins (serotonylation). Previous research indicates that TG2 expression is upregulated in human asthma and in the lung endothelium of ovalbumin (OVA)-challenged mice. It is not known whether endothelial cell TG2 is required for allergic inflammation. Therefore, to determine whether endothelial cell TG2 regulates allergic inflammation, mice with an endothelial cell-specific deletion of TG2 were generated, and these mice were sensitized and challenged in the airways with OVA. Deletion of TG2 in endothelial cells blocked OVA-induced serotonylation in lung endothelial cells, but not lung epithelial cells. Interestingly, deletion of endothelial TG2 reduced allergen-induced increases in respiratory system resistance, number of eosinophils in the bronchoalveolar lavage, and number of eosinophils in the lung tissue. Endothelial cell deletion of TG2 did not alter expression of adhesion molecules, cytokines, or chemokines that regulate leukocyte recruitment, consistent with other studies, demonstrating that deletion of endothelial cell signals does not alter lung cytokines and chemokines during allergic inflammation. Taken together, the data indicate that endothelial cell TG2 is required for allergic inflammation by regulating the recruitment of eosinophils into OVA-challenged lungs. In summary, TG2 functions as a critical signal for allergic lung responses. These data identify potential novel targets for intervention in allergy/asthma., (Copyright © 2015 the American Physiological Society.)
- Published
- 2015
- Full Text
- View/download PDF
46. The heterogeneity of lung macrophages in the susceptibility to disease.
- Author
-
Morales-Nebreda L, Misharin AV, Perlman H, and Budinger GR
- Subjects
- Animals, Cell Differentiation, Cell Self Renewal, Disease Susceptibility, Epigenesis, Genetic, Humans, Lung Diseases diagnosis, Lung Diseases genetics, Lung Diseases immunology, Lung Diseases metabolism, Phenotype, Risk Factors, Cellular Microenvironment, Lung immunology, Lung metabolism, Lung pathology, Lung Diseases etiology, Macrophages, Alveolar immunology, Macrophages, Alveolar metabolism, Macrophages, Alveolar pathology
- Abstract
Alveolar macrophages are specialised resident phagocytes in the alveolus, constituting the first line of immune cellular defence in the lung. As the lung microenvironment is challenged and remodelled by inhaled pathogens and air particles, so is the alveolar macrophage pool altered by signals that maintain and/or replace its composition. The signals that induce the recruitment of circulating monocytes to the injured lung, as well as their distinct gene expression profile and susceptibility to epigenetic reprogramming by the local environment remain unclear. In this review, we summarise the unique characteristics of the alveolar macrophage pool ontogeny, phenotypic heterogeneity and plasticity during homeostasis, tissue injury and normal ageing. We also discuss new evidence arising from recent studies where investigators described how the epigenetic landscape drives the specific gene expression profile of alveolar macrophages. Altogether, new analysis of macrophages by means of "omic" technologies will allow us to identify key pathways by which these cells contribute to the development and resolution of lung disease in both mice and humans., (Copyright ©ERS 2015.)
- Published
- 2015
- Full Text
- View/download PDF
47. Driving pressure as a key ventilation variable.
- Author
-
Morales-Nebreda L, Jain M, and Corbridge TC
- Subjects
- Humans, Positive-Pressure Respiration methods, Respiratory Distress Syndrome mortality, Tidal Volume
- Published
- 2015
- Full Text
- View/download PDF
48. Vimentin regulates activation of the NLRP3 inflammasome.
- Author
-
dos Santos G, Rogel MR, Baker MA, Troken JR, Urich D, Morales-Nebreda L, Sennello JA, Kutuzov MA, Sitikov A, Davis JM, Lam AP, Cheresh P, Kamp D, Shumaker DK, Budinger GR, and Ridge KM
- Subjects
- Acute Lung Injury metabolism, Animals, Bleomycin chemistry, Bone Marrow Cells cytology, Bronchoalveolar Lavage Fluid, Cell Line, Cell Proliferation, Female, Fibrosis, Interleukin-1beta metabolism, Lung metabolism, Lung pathology, Macrophages metabolism, Male, Mice, Mice, Knockout, Microscopy, Atomic Force, NLR Family, Pyrin Domain-Containing 3 Protein, Protein Interaction Mapping, Carrier Proteins metabolism, Inflammasomes metabolism, Inflammation metabolism, Vimentin metabolism
- Abstract
Activation of the NLRP3 inflammasome and subsequent maturation of IL-1β have been implicated in acute lung injury (ALI), resulting in inflammation and fibrosis. We investigated the role of vimentin, a type III intermediate filament, in this process using three well-characterized murine models of ALI known to require NLRP3 inflammasome activation. We demonstrate that central pathophysiologic events in ALI (inflammation, IL-1β levels, endothelial and alveolar epithelial barrier permeability, remodelling and fibrosis) are attenuated in the lungs of Vim(-/-) mice challenged with LPS, bleomycin and asbestos. Bone marrow chimeric mice lacking vimentin have reduced IL-1β levels and attenuated lung injury and fibrosis following bleomycin exposure. Furthermore, decreased active caspase-1 and IL-1β levels are observed in vitro in Vim(-/-) and vimentin-knockdown macrophages. Importantly, we show direct protein-protein interaction between NLRP3 and vimentin. This study provides insights into lung inflammation and fibrosis and suggests that vimentin may be a key regulator of the NLRP3 inflammasome.
- Published
- 2015
- Full Text
- View/download PDF
49. Nitric oxide prevents alveolar senescence and emphysema in a mouse model.
- Author
-
Boe AE, Eren M, Morales-Nebreda L, Murphy SB, Budinger GR, Mutlu GM, Miyata T, and Vaughan DE
- Subjects
- Animals, Cellular Senescence, Emphysema chemically induced, Mice, Inbred C57BL, NG-Nitroarginine Methyl Ester, Pulmonary Alveoli metabolism, Emphysema metabolism, Nitric Oxide physiology, Pulmonary Alveoli pathology
- Abstract
Nω-nitro-L-arginine methyl ester (L-NAME) treatment induces arteriosclerosis and vascular senescence. Here, we report that the systemic inhibition of nitric oxide (NO) production by L-NAME causes pulmonary emphysema. L-NAME-treated lungs exhibited both the structural (alveolar tissue destruction) and functional (increased compliance and reduced elastance) characteristics of emphysema development. Furthermore, we found that L-NAME-induced emphysema could be attenuated through both genetic deficiency and pharmacological inhibition of plasminogen activator inhibitor-1 (PAI-1). Because PAI-1 is an important contributor to the development of senescence both in vitro and in vivo, we investigated whether L-NAME-induced senescence led to the observed emphysematous changes. We found that L-NAME treatment was associated with molecular and cellular evidence of premature senescence in mice, and that PAI-1 inhibition attenuated these increases. These findings indicate that NO serves to protect and defend lung tissue from physiological aging.
- Published
- 2015
- Full Text
- View/download PDF
50. The cardiac protein αT-catenin contributes to chemical-induced asthma.
- Author
-
Folmsbee SS, Morales-Nebreda L, Van Hengel J, Tyberghein K, Van Roy F, Budinger GR, Bryce PJ, and Gottardi CJ
- Subjects
- Animals, Asthma, Occupational chemically induced, Cells, Cultured, Female, Humans, Intercellular Junctions metabolism, Lung blood supply, Lung metabolism, Lung pathology, Mice, Inbred C57BL, Mice, Knockout, Myocytes, Cardiac metabolism, Pulmonary Veins metabolism, Pulmonary Veins pathology, Air Pollutants toxicity, Asthma, Occupational metabolism, Toluene 2,4-Diisocyanate toxicity, alpha Catenin metabolism
- Abstract
Ten to 25% of adult asthma is occupational induced, a subtype caused by exposure to workplace chemicals. A recent genomewide association study identified single-nucleotide polymorphisms in the cardiac protein αT-catenin (αT-cat) that correlated with the incidence and severity of toluene diisocyanate (TDI) occupational asthma. αT-cat is a critical mediator of cell-cell adhesion and is predominantly expressed in cardiomyocytes, but its connection to asthma remains unknown. Therefore, we sought to determine the primary αT-cat-expressing cell type in the lung and its contribution to lung physiology in a murine model of TDI asthma. We show that αT-cat is expressed in lung within the cardiac sheath of pulmonary veins. Mechanically ventilated αT-cat knockout (KO) mice exhibit a significantly increased pressure-volume curve area compared with wild-type (WT) mice, suggesting that αT-cat loss affects lung hysteresis. Using a murine model of TDI asthma, we find that αT-cat KO mice show increased airway hyperresponsiveness to methacholine compared with WT mice. Bronchoalveolar lavage reveals only a mild macrophage-dominant inflammation that is not significantly different between WT and KO mice. These data suggest that αT-cat may contribute to asthma through a mechanism independent of inflammation and related to heart and pulmonary vein dysfunction., (Copyright © 2015 the American Physiological Society.)
- Published
- 2015
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.