173 results on '"Mills KI"'
Search Results
2. Elevated Bcr-Abl expression levels are sufficient for a haematopoietic cell line to acquire a drug-resistant phenotype
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Keeshan, K, Mills, KI, Cotter, TG, and McKenna, SL
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- 2001
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3. HLA and Hogkin’s disease: reply to Taylor and Gokhale
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Dorak, MT, Mills, KI, Poynton, CH, and Burnett, AK
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- 1997
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4. S2. APPLICATION OF ARRAY-CGH FOR THE DETECTION OF SUBMICROSCOPIC CHROMOSOMAL IMBALANCES IN 400 CASES OF CHILDREN WITH IDIOPATHIC MENTAL RETARDATION AND CONGENITAL MALFORMATIONS
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Carty, Paula, Kelly, Johanna, McCabe, Sarah, Coen, Natasha, Bermingham, Claire, Morris, Thomas, Betts, David, Sharkey, Freddie, Wilkie, Nick, Maher, Eddy, FitzPatrick, David, O'Shea, Rosie, Treacy, Eileen, Murphy, Anne Marie, Lynch, Sally Ann, Lambert, Deborah, Kirk, Claire W, Morrison, Patrick J, Anney, Richard, Kenny, Elaine, O'Dushlaine, Colm, Su, Jessica, Franke, Barbara, Neale, Ben, Faraone, Steven, Gill, Michael, Meng, W, Hughes, A, Patterson, CC, Belton, C, Kee, F, McKeown, PP, Tansey, Katherine, Hill, Matthew, Gallagher, Louise, Willoughby, CE, O'Prey, D, Simpson, DAC, Morgan, CP, Allen, D, Kenna, PF, Humphries, P, Farrar, GJ, Murphy, TM, Perry, AS, O'Connor, L, Lawler, M, Shah, Naisha, Conroy, Judith, Regan, Regina, Ennis, Sean, Shields, Denis C, Carroll, Nicola, Pangilinan, Faith, Molloy, Anne M., Troendle, James, Mills, James L., Kirke, Peadar N., Brody, Lawrence C., Scott, John M., Parle-McDermott, Anne, Dagdan, E, McKeon, P, Roche, S, Bradley, L, Green, AJ, Lynch, SA, Magee, Alan, O'Brien, Kirsty, O'Marcaigh, Aengus, Enright, Helen, Fiedler, Christian, Dash, DP, George, Sonia, Silvestri, G, Jackson, J, Frazer, D, Hughes, AE, Laing, ME, Dicker, P, Conlon, PJ, Shields, D, Murphy, GM, Donnelly, Deirdre, McKee, Shane, Dunlop, Adam, Green, Andrew, Clarke, Gillian, McNerlan, SE, McGrattan, P, Logan, A, Humphreys, M, Stewart, Fiona, Tylee, Karen, Bradley, Aoife, Cooper, Alan, Wright, William T, Hart, Pádraig J, Heggarty, Shirley V, Young, Ian S, Nicholls, D Paul, Graham, Colin A, Ward, Alana, deBaroid, Cliona, Lynch, Sally-Ann, Magee, Alex, Beckett, A, Harper, A, Casey, F, Stewart, F, Russell, Miriam, Kilty, CA, O'Reilly, M, Millington-Ward, S, Chadderton, N, Palfi, A, McKee, Alex G, O'Sullivan, Niamh C, Chadderton, Naomi, Loscher, Jennifer S, O'Shea, Sean, Moran, Mary, McCabe, Olive, Fernández, Alfonso Blanco, Pangalos, Menelas N, Regan, Ciaran M, O'Connor, William T, Humphries, Peter, Farrar, G Jane, Murphy, Keith J, Cairns, C, Dempsey, SI, Humphreys, MW, Clark, GR, Muszynska, D, Alexander, S, Crowe, P, O'Neill, J, McKay, GJ, Mills, KI, Gilkes, AF, McMullin, MF, Gill, Micheal, McConnell, V, Smith, G, McCullough, S, Sweet, K, McIlhatton, B, Logan, P, Graham, C, Gilks, William P, Allott, Emma, Corvin, Aiden P, Morris, Derek W, Quinn, Emma, Morris, Derek, Corvin, Aiden, O'Dushlaine, Colm T, Anney, Richard JL, Pinto, Carlos, Hegarty, KG, Daly, M, Shanahan, F, Molloy, MG, Meehan, Maria, Watson, Jenny, Gallagher, Emma, Mc Goldrick, Alo, Harrison, Michèle, Kay, Elaine, Fitzpatrick, John, Dervan, Peter, Mc Cann, Amanda, Molloy, Niamh HN, Darlow, John M, Green, Andrew J, Puri, Prem, Barton, David E, Wong, Wei San, McGuinness, Claire, Kelly, SB, Parfrey, NA, Ryan, AM, Hand, CK, Ryan, Anthony W, Al-Jubury, Kutaiba, Turner, Graham, Gallagher, Phil, Irvine, Alan, Fitzgerald, Oliver, Kirby, Brian, McManus, Ross, and Harris, C
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Poster Presentations ,Abstracts ,Spoken Papers - Published
- 2009
5. Does the breakpoint within the major breakpoint cluster region (M-bcr) influence the duration of the chronic phase in chronic myeloid leukemia? An analytical comparison of current literature [see comments]
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Mills, KI, primary, Benn, P, additional, and Birnie, GD, additional
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- 1991
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6. bcr breakpoint and prognosis of chronic phase chronic myeloid leukemia [letter; comment]
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Benn, P, primary, Birnie, GD, additional, MacKenzie, E, additional, and Mills, KI, additional
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- 1990
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7. The site of the breakpoint within the bcr is a prognostic factor in Philadelphia-positive CML patients [see comments]
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Mills, KI, MacKenzie, ED, and Birnie, GD
- Abstract
The Philadelphia (Ph1) chromosome, characteristic of chronic myelogenous leukemia (CML), arises from a reciprocal translocation between chromosomes 9 and 22. The site of the breakpoint on chromosome 22 is within a small region called the breakpoint cluster region (bcr). We have mapped the breakpoint within the bcr in peripheral blood leukocyte DNA from 22 Ph1-positive CML patients. No correlation between the site of the breakpoint and the clinical phase of the disease was found. However, a striking correlation between the site of the breakpoint and the length of time between presentation and onset of acute phase was observed: on average, patients with a 5' break-point had a fourfold longer chronic phase (median, 203 weeks) than those with a 3' breakpoint (median, 52 weeks).
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- 1988
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8. Cryptic splicing events in the iron transporter ABCB7 and other key target genes in SF3B1-mutant myelodysplastic syndromes
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Dolatshad, H, Pellagatti, A, Liberante, FG, Llorian, M, Repapi, E, Steeples, V, Roy, S, Scifo, L, Armstrong, RN, Shaw, J, Yip, BH, Killick, S, Kušec, R, Taylor, S, Mills, KI, Savage, KI, Smith, CWJ, and Boultwood, J
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Base Sequence ,Iron ,RNA Splicing ,Hematopoietic Stem Cells ,Phosphoproteins ,3. Good health ,Mitochondria ,hemic and lymphatic diseases ,Myelodysplastic Syndromes ,Tumor Cells, Cultured ,Humans ,ATP-Binding Cassette Transporters ,RNA Splicing Factors ,Cycloheximide - Abstract
The splicing factor SF3B1 is the most frequently mutated gene in myelodysplastic syndromes (MDS), and is strongly associated with the presence of ring sideroblasts (RS). We have performed a systematic analysis of cryptic splicing abnormalities from RNA sequencing data on hematopoietic stem cells (HSCs) of SF3B1-mutant MDS cases with RS. Aberrant splicing events in many downstream target genes were identified and cryptic 3' splice site usage was a frequent event in SF3B1-mutant MDS. The iron transporter ABCB7 is a well-recognized candidate gene showing marked downregulation in MDS with RS. Our analysis unveiled aberrant ABCB7 splicing, due to usage of an alternative 3' splice site in MDS patient samples, giving rise to a premature termination codon in the ABCB7 mRNA. Treatment of cultured SF3B1-mutant MDS erythroblasts and a CRISPR/Cas9-generated SF3B1-mutant cell line with the nonsense-mediated decay (NMD) inhibitor cycloheximide showed that the aberrantly spliced ABCB7 transcript is targeted by NMD. We describe cryptic splicing events in the HSCs of SF3B1-mutant MDS, and our data support a model in which NMD-induced downregulation of the iron exporter ABCB7 mRNA transcript resulting from aberrant splicing caused by mutant SF3B1 underlies the increased mitochondrial iron accumulation found in MDS patients with RS.
9. Outcomes with intensive treatment for acute myeloid leukemia: an analysis of two decades of data from the HARMONY Alliance.
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Sobas MA, Turki AT, Ramiro AV, Hernández-Sánchez A, Elicegui JM, González T, Melchor RA, Abáigar M, Tur L, Dall'Olio D, Sträng E, Tettero JM, Castellani G, Benner A, Döhner K, Thiede C, Metzeler KH, Haferlach T, Damm F, Ayala R, Martínez-López J, Mills KI, Sierra J, Lehmann S, Porta MGD, Mayer J, Reinhardt D, Medina RV, Schulze-Rath R, Barbus M, Hernández-Rivas JM, Huntly BJP, Ossenkoppele G, Döhner H, and Bullinger L
- Abstract
Since 2017, targeted therapies combined with conventional intensive chemotherapy have started to improve outcome of patients with acute myeloid leukemia (AML). However, even before these innovations outcomes with intensive chemotherapy have improved, which has not yet been extensively studied. Thus, we used a large pan-European multicenter dataset of the HARMONY Alliance to evaluate treatment-time dependent outcomes over two decades. In 5359 AML patients, we compared the impact of intensive induction therapy on outcome over four consecutive 5-year calendar periods from 1997 to 2016. During that time, the 5- year survival of AML patients improved significantly, also across different genetic risk groups. In particular, the 60-day mortality rate has dropped from 13.0% to 4.7% over time. The independent effect of calendar periods on outcome was confirmed in multivariate models. Improvements were documented both for patients.
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- 2024
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10. Development of CD33-Targeted Dual Drug-Loaded Nanoparticles for the Treatment of Pediatric Acute Myeloid Leukemia.
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Carvalho AM, Greene MK, Smyth P, Mutch A, McLaughlin KM, Cairns LV, Mills KI, McCloskey KD, and Scott CJ
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- Humans, Sulfonamides chemistry, Sulfonamides pharmacology, Sulfonamides administration & dosage, Piperazines chemistry, Piperazines pharmacology, Piperazines administration & dosage, Biphenyl Compounds chemistry, Biphenyl Compounds pharmacology, Nitrophenols chemistry, Nitrophenols pharmacology, Cell Line, Tumor, Child, Polylactic Acid-Polyglycolic Acid Copolymer chemistry, Apoptosis drug effects, Drug Delivery Systems methods, Gemtuzumab chemistry, Gemtuzumab pharmacology, Drug Carriers chemistry, Sialic Acid Binding Ig-like Lectin 3, Leukemia, Myeloid, Acute drug therapy, Nanoparticles chemistry
- Abstract
Paediatric acute myeloid leukemia (AML) is a heterogeneous hematological malignancy still heavily reliant on traditional chemotherapeutic approaches. Combination treatments have shown to be a superior approach, but their success is often hindered by side effects and different drugs' pharmacokinetics. Here, we investigated ABT-737 and Purvalanol A as a potential drug pairing for pediatric AML and described the development of CD33-targeted polymeric nanoparticles (NPs) to enable their simultaneous targeted codelivery. Separate drug encapsulation within poly(lactic- co -glycolic acid) (PLGA) NPs was optimized prior to coencapsulation of both drugs at a synergistic ratio in PEGylated PLGA NPs. The therapeutic effects of formulations were evaluated in a panel of pediatric AML cells, and dual drug-loaded NPs (dual NPs) demonstrated significantly enhanced apoptotic cell death. Moreover, conjugation to gemtuzumab resulted in improved NP binding and internalization in CD33-positive cells. Finally, CD33-targeted dual-loaded NPs showed enhanced cytotoxicity to CD33-positive AML cells via CD33-mediated targeted drug delivery.
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- 2024
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11. Rearrangements involving 11q23.3/KMT2A in adult AML: mutational landscape and prognostic implications - a HARMONY study.
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Hernández-Sánchez A, González T, Sobas M, Sträng E, Castellani G, Abáigar M, Valk PJM, Villaverde Ramiro Á, Benner A, Metzeler KH, Azibeiro R, Tettero JM, Martínez-López J, Pratcorona M, Martínez Elicegui J, Mills KI, Thiede C, Sanz G, Döhner K, Heuser M, Haferlach T, Turki AT, Reinhardt D, Schulze-Rath R, Barbus M, Hernández-Rivas JM, Huntly B, Ossenkoppele G, Döhner H, and Bullinger L
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- Humans, Middle Aged, Prognosis, Adult, Female, Male, Aged, Young Adult, Translocation, Genetic, Gene Rearrangement, Adolescent, Aged, 80 and over, Survival Rate, High-Throughput Nucleotide Sequencing, Leukemia, Myeloid, Acute genetics, Leukemia, Myeloid, Acute mortality, Leukemia, Myeloid, Acute therapy, Myeloid-Lymphoid Leukemia Protein genetics, Histone-Lysine N-Methyltransferase genetics, Mutation, Chromosomes, Human, Pair 11 genetics
- Abstract
Balanced rearrangements involving the KMT2A gene (KMT2Ar) are recurrent genetic abnormalities in acute myeloid leukemia (AML), but there is lack of consensus regarding the prognostic impact of different fusion partners. Moreover, prognostic implications of gene mutations co-occurring with KMT2Ar are not established. From the HARMONY AML database 205 KMT2Ar adult patients were selected, 185 of whom had mutational information by a panel-based next-generation sequencing analysis. Overall survival (OS) was similar across the different translocations, including t(9;11)(p21.3;q23.3)/KMT2A::MLLT3 (p = 0.756). However, independent prognostic factors for OS in intensively treated patients were age >60 years (HR 2.1, p = 0.001), secondary AML (HR 2.2, p = 0.043), DNMT3A-mut (HR 2.1, p = 0.047) and KRAS-mut (HR 2.0, p = 0.005). In the subset of patients with de novo AML < 60 years, KRAS and TP53 were the prognostically most relevant mutated genes, as patients with a mutation of any of those two genes had a lower complete remission rate (50% vs 86%, p < 0.001) and inferior OS (median 7 vs 30 months, p < 0.001). Allogeneic hematopoietic stem cell transplantation in first complete remission was able to improve OS (p = 0.003). Our study highlights the importance of the mutational patterns in adult KMT2Ar AML and provides new insights into more accurate prognostic stratification of these patients., (© 2024. The Author(s).)
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- 2024
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12. Bithionol eliminates acute myeloid leukaemia stem-like cells by suppressing NF-κB signalling and inducing oxidative stress, leading to apoptosis and ferroptosis.
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Dias IRSB, Costa RGA, Rodrigues ACBDC, Silva SLR, Oliveira MS, Soares MBP, Dias RB, Valverde LF, Gurgel Rocha CA, Cairns LV, Mills KI, and Bezerra DP
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Acute myeloid leukaemia (AML) is a lethal bone marrow neoplasm caused by genetic alterations in blood cell progenitors. Leukaemic stem cells (LSCs) are responsible for the development of AML, drug resistance and relapse. Bithionol is an old anthelmintic drug with potential antibacterial, antiviral, antifungal, anti-Alzheimer, and antitumour properties. In this work, we focused on the anti-AML LSC properties of bithionol. This compound inhibited the viability of both solid and haematological cancer cells, suppressed AML stem-like cells, and inhibited AML growth in NSG mice at a dosage of 50 mg/kg, with tolerable systemic toxicity. Bithionol significantly reduced the levels of phospho-NF-κB p65 (Ser529) and phospho-NF-κB p65 (Ser536) and nuclear NF-κB p65 translocation in AML cells, indicating that this molecule can suppress NF-κB signalling. DNA fragmentation, nuclear condensation, cell shrinkage, phosphatidylserine externalisation, loss of transmembrane mitochondrial potential, caspase-3 activation and PARP-(Asp 214) cleavage were detected in bithionol-treated AML cells, indicating the induction of apoptosis. Furthermore, this compound increased mitochondrial superoxide levels, and bithionol-induced cell death was partially prevented by cotreatment with the selective ferroptosis inhibitor ferrostatin-1, indicating the induction of ferroptosis. In addition, bithionol synergised with venetoclax in AML cells, indicating the translational potential of bithionol to enhance the effects of venetoclax in patients with AML. Taken together, these data indicate that bithionol is a potential new anti-AML drug., (© 2024. The Author(s).)
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- 2024
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13. Nutrition Provision in Children with Heart Disease on Extracorporeal Membrane Oxygenation (ECMO).
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Kerstein JS, Pane CR, Sleeper LA, Finnan E, Thiagarajan RR, Mehta NM, and Mills KI
- Abstract
Nutrition provision for children with heart disease supported with extracorporeal membrane oxygenation (ECMO) involves nuanced decision making. We examined nutrition provision while on ECMO in the CICU and the relationship between energy and protein adequacy and end organ function as assessed by pediatric sequential organ failure assessment (pSOFA) scores in children with heart disease supported with ECMO. Children (≤ 21 years-old) with congenital or acquired heart disease who received ECMO in the cardiac intensive care unit were included. There were 259 ECMO runs in 252 patients over an 8-year study period (2013-2020). Median energy delivery and adequacy were 26.1 [8.4, 45.9] kcal/kg/day and 58.3 [19.8, 94.6]%, respectively. Median protein delivery and adequacy were 0.98 [0.36, 1.64] g/kg/day and 35.7 [13.4, 60.3]%, respectively. pSOFA increased by a median of four points during the ECMO run. Change in pSOFA score was not associated with energy or protein adequacy (p = 0.46 and p = 0.72, respectively). Higher energy and protein adequacy-from parenteral nutrition-correlated with increased hospital-acquired infections (HAIs, p = 0.031 and p = 0.003, respectively). Achieving nutritional adequacy was dependent on the use of parenteral nutrition. Similar clinical outcomes with regard to end organ function but with an increased incidence of HAIs suggests the need to explore the role of optimal enteral nutrition delivery on ECMO., (© 2024. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)
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- 2024
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14. TRIM33 loss in multiple myeloma is associated with genomic instability and sensitivity to PARP inhibitors.
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McAvera RM, Morgan JJ, Herrero AB, Mills KI, and Crawford LJ
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- Humans, DNA Repair, DNA Breaks, Double-Stranded, Genomic Instability, Transcription Factors, Poly(ADP-ribose) Polymerase Inhibitors pharmacology, Multiple Myeloma drug therapy, Multiple Myeloma genetics
- Abstract
Deletions of chromosome 1p (del(1p)) are a recurrent genomic aberration associated with poor outcome in Multiple myeloma (MM.) TRIM33, an E3 ligase and transcriptional co-repressor, is located within a commonly deleted region at 1p13.2. TRIM33 is reported to play a role in the regulation of mitosis and PARP-dependent DNA damage response (DDR), both of which are important for maintenance of genome stability. Here, we demonstrate that MM patients with loss of TRIM33 exhibit increased chromosomal instability and poor outcome. Through knockdown studies, we show that TRIM33 loss induces a DDR defect, leading to accumulation of DNA double strand breaks (DSBs) and slower DNA repair kinetics, along with reduced efficiency of non-homologous end joining (NHEJ). Furthermore, TRIM33 loss results in dysregulated ubiquitination of ALC1, an important regulator of response to PARP inhibition. We show that TRIM33 knockdown sensitizes MM cells to the PARP inhibitor Olaparib, and this is synergistic with the standard of care therapy bortezomib, even in co-culture with bone marrow stromal cells (BMSCs). These findings suggest that TRIM33 loss contributes to the pathogenesis of high-risk MM and that this may be therapeutically exploited through the use of PARP inhibitors., (© 2024. The Author(s).)
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- 2024
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15. Stress Ulcer Prophylaxis Versus Placebo-A Blinded Pilot Randomized Controlled Trial to Evaluate the Safety of Two Strategies in Critically Ill Infants With Congenital Heart Disease.
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Mills KI, Albert BD, Bechard LJ, Chu S, Duggan CP, Kaza A, Rakoff-Nahoum S, Sleeper LA, Newburger JW, Priebe GP, and Mehta NM
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- Humans, Critical Illness therapy, Gastrointestinal Hemorrhage prevention & control, Pilot Projects, Treatment Outcome, Ulcer complications, Infant, Heart Defects, Congenital complications, Peptic Ulcer prevention & control
- Abstract
Objectives: The routine use of stress ulcer prophylaxis (SUP) in infants with congenital heart disease (CHD) in the cardiac ICU (CICU) is controversial. We aimed to conduct a pilot study to explore the feasibility of performing a subsequent larger trial to assess the safety and efficacy of withholding SUP in this population (NCT03667703)., Design, Setting, Patients: Single-center, prospective, double-blinded, parallel group (SUP vs. placebo), pilot randomized controlled pilot trial (RCT) in infants with CHD admitted to the CICU and anticipated to require respiratory support for greater than 24 hours., Interventions: Patients were randomized 1:1 (stratified by age and admission type) to receive a histamine-2 receptor antagonist or placebo until respiratory support was discontinued, up to 14 days, or transfer from the CICU, if earlier., Measurements and Main Results: Feasibility was defined a priori by thresholds of screening rate, consent rate, timely drug allocation, and protocol adherence. The safety outcome was the rate of clinically significant upper gastrointestinal (UGI) bleeding. We screened 1,426 patients from February 2019 to March 2022; of 132 eligible patients, we gained informed consent in 70 (53%). Two patients did not require CICU admission after obtaining consent, and the remaining 68 patients were randomized to SUP (n = 34) or placebo (n = 34). Ten patients were withdrawn early, because of a change in eligibility (n = 3) or open-label SUP use (n = 7, 10%). Study procedures were completed in 58 patients (89% protocol adherence). All feasibility criteria were met. There were no clinically significant episodes of UGI bleeding during the pilot RCT. The percentage of patients with other nonserious adverse events did not differ between groups., Conclusions: Withholding of SUP in infants with CHD admitted to the CICU was feasible. A larger multicenter RCT designed to confirm the safety of this intervention and its impact on incidence of UGI bleeding, gastrointestinal microbiome, and other clinical outcomes is warranted., Competing Interests: Dr. Mills’ institution received funding from The Gerber Foundation. Dr. Duggan’s institution received funding from Takeda; he received funding from UpToDate. Drs. Duggan and Mehta received support for article research from the National Institutes of Health. Dr. Sleeper received funding from The Gerber Foundation and Tenaya Therapeutics. Dr. Newburger received funding from Pfizer, Daiichii-Sankyo, Bristol-Myer-Squibb, Novartis, and UpToDate. Dr. Priebe’s institution received funding from The Gerber Foundation’s National Research Grant (#5781) and the U.S. Department of Defense (grant # PR181874 and W81XWH-19-1-0208); he disclosed the off-label product use of famotidine and ranitidine. The remaining authors have disclosed that they do not have any potential conflicts of interest., (Copyright © 2023 by the Society of Critical Care Medicine and the World Federation of Pediatric Intensive and Critical Care Societies.)
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- 2024
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16. Risk Factors for Adverse Outcomes in Term Infants with CHD and Definitive Necrotising Enterocolitis.
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Deitch AM, Moynihan K, Przybylski R, Gauvreau K, Braudis NJ, Farr B, Modi B, Mills KI, Nathan M, and Levy PT
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- Infant, Female, Infant, Newborn, Humans, Child, Infant, Premature, Retrospective Studies, Risk Factors, Enterocolitis, Necrotizing complications, Enterocolitis, Necrotizing epidemiology, Enterocolitis, Necrotizing diagnosis, Fetal Diseases
- Abstract
Objectives: To define the incidence of definitive necrotising enterocolitis in term infants with CHD and identify risk factors for morbidity/mortality., Methods: We performed a 20-year (2000-2020) single-institution retrospective cohort study of term infants with CHD admitted to the Boston Children's Hospital cardiac ICU with necrotising enterocolitis (Bell's stage ≥ II). The primary outcome was a composite of in-hospital mortality and post-necrotising enterocolitis morbidity (need for extracorporeal membrane oxygenation, multisystem organ failure based on the paediatric sequential organ failure assessment score, and/or need for acute gastrointestinal intervention). Predictors included patient characteristics, cardiac diagnosis/interventions, feeding regimen, and severity measures., Results: Of 3933 term infants with CHD, 2.1% (n = 82) developed necrotising enterocolitis, with 67% diagnosed post-cardiac intervention. Thirty (37%) met criteria for the primary outcome. In-hospital mortality occurred in 14 infants (17%), of which nine (11%) deaths were attributable to necrotising enterocolitis. Independent predictors of the primary outcome included moderate to severe systolic ventricular dysfunction (odds ratio 13.4,confidence intervals 1.13-159) and central line infections pre-necrotising enterocolitis diagnosis (odds ratio 17.7, confidence intervals 3.21-97.0) and mechanical ventilation post-necrotising enterocolitis diagnosis (odds ratio 13.5, confidence intervals 3.34-54.4). Single ventricle, ductal dependency, and feeding related factors were not independently associated with the primary outcome., Conclusions: The incidence of necrotising enterocolitis was 2.1% in term infants with CHD. Adverse outcomes occurred in greater than 30% of patients. Presence of systolic dysfunction and central line infections prior to diagnosis and need for mechanical ventilation after diagnosis of necrotising enterocolitis can inform risk triage and prognostic counseling for families.
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- 2024
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17. Nutrition for critically ill children with congenital heart disease.
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Kerstein JS, Klepper CM, Finnan EG, and Mills KI
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- Infant, Newborn, Child, Humans, Nutritional Status, Nutrients, Nutrition Assessment, Critical Illness therapy, Heart Defects, Congenital therapy
- Abstract
Children with congenital heart disease often require admission to the cardiac intensive care unit at some point in their lives, either after elective surgical or catheter-based procedures or during times of acute critical illness. Meeting both the macronutrient and micronutrient needs of children in the cardiac intensive care unit requires complex decision-making when considering gastrointestinal perfusion, vasoactive support, and fluid balance goals. Although nutrition guidelines exist for critically ill children, these cannot always be extrapolated to children with congenital heart disease. Children with congenital heart disease may also suffer unique circumstances, such as chylothoraces, heart failure, and the need for mechanical circulatory support, which greatly impact nutrition delivery. Guidelines for neonates and children with heart disease continue to be developed. We provide a synthesized narrative review of current literature and considerations for nutrition evaluation and management of critically ill children with congenital heart disease., (© 2023 American Society for Parenteral and Enteral Nutrition.)
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- 2023
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18. Combination Therapies Targeting Apoptosis in Paediatric AML: Understanding the Molecular Mechanisms of AML Treatments Using Phosphoproteomics .
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Ali AA, Cairns LV, Clarke KM, Blayney JK, Lappin KM, and Mills KI
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- Child, Humans, Cell Line, Tumor, Myeloid Cell Leukemia Sequence 1 Protein metabolism, Proto-Oncogene Proteins c-bcl-2 metabolism, Apoptosis, Leukemia, Myeloid, Acute drug therapy, Leukemia, Myeloid, Acute metabolism
- Abstract
Paediatric acute myeloid leukaemia (AML) continues to present treatment challenges, as no "standard approach" exists to treat those young patients reliably and safely. Combination therapies could become a viable treatment option for treating young patients with AML, allowing multiple pathways to be targeted. Our in silico analysis of AML patients highlighted "cell death and survival" as an aberrant, potentially targetable pathway in paediatric AML patients. Therefore, we aimed to identify novel combination therapies to target apoptosis. Our apoptotic drug screening resulted in the identification of one potential "novel" drug pairing, comprising the Bcl-2 inhibitor ABT-737 combined with the CDK inhibitor Purvalanol-A, as well as one triple combination of ABT-737 + AKT inhibitor + SU9516, which showed significant synergism in a series of paediatric AML cell lines. Using a phosphoproteomic approach to understand the apoptotic mechanism involved, proteins related to apoptotic cell death and cell survival were represented, in agreement with further results showing differentially expressed apoptotic proteins and their phosphorylated forms among combination treatments compared to single-agent treated cells such upregulation of BAX and its phosphorylated form (Thr167), dephosphorylation of BAD (Ser 112), and downregulation of MCL-1 and its phosphorylated form (Ser159/Thr 163). Total levels of Bcl-2 were decreased but correlated with increased levels of phosphorylated Bcl-2, which was consistent with our phosphoproteomic analysis predictions. Bcl-2 phosphorylation was regulated by extracellular-signal-regulated kinase (ERK) but not PP2A phosphatase. Although the mechanism linking to Bcl-2 phosphorylation remains to be determined, our findings provide first-hand insights on potential novel combination treatments for AML.
- Published
- 2023
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19. Cardiovascular intensive care unit variables inform need for feeding tube utilization in infants with hypoplastic left heart syndrome.
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Milligan C, Mills KI, Ge S, Michalowski A, Braudis N, Mansfield L, Nathan M, Sleeper LA, and Teele SA
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- Child, Infant, Humans, Retrospective Studies, Length of Stay, Intensive Care Units, Palliative Care methods, Treatment Outcome, Hypoplastic Left Heart Syndrome diagnosis, Hypoplastic Left Heart Syndrome surgery, Hypoplastic Left Heart Syndrome complications, Vocal Cord Dysfunction complications
- Abstract
Objective: Feeding strategies in infants with hypoplastic left heart syndrome (HLHS) following stage 1 palliation (S1P) include feeding tube utilization (FTU). Timely identification of infants who will fail oral feeding could mitigate morbidity in this vulnerable population. We aimed to develop a novel clinical risk prediction score for FTU., Methods: This was a retrospective study of infants with HLHS admitted to the Boston Children's Hospital cardiovascular intensive care unit for S1P from 2009 to 2019. Infants discharged with feeding tubes were compared with those on full oral feeds. Variables from early (birth to surgery), mid (postsurgery to cardiovascular intensive care unit transfer), and late (inpatient transfer to discharge) hospitalization were analyzed in univariate and multivariable models., Results: Of 180 infants, 66 (36.7%) discharged with a feeding tube. In univariate analyses, presence of a genetic disorder (early variable, odds ratio, 3.25; P = .014) and nearly all mid and late variables were associated with FTU. In the mid multivariable model, abnormal head imaging, ventilation duration, and vocal cord dysfunction were independent predictors of FTU (c-statistic 0.87). Addition of late variables minimally improved the model (c-statistic 0.91). A risk score (the HV2 score) for FTU was developed based on the mid multivariable model with high specificity (93%)., Conclusions: Abnormal head imaging, duration of ventilation, and presence of vocal cord dysfunction were associated with FTU in infants with HLHS following S1P. The predictive HV2 risk score supports routine perioperative head imaging and vocal cord evaluation. Future application of the HV2 score may improve nutritional morbidity and hospital length of stay in this population., (Copyright © 2022 The American Association for Thoracic Surgery. Published by Elsevier Inc. All rights reserved.)
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- 2023
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20. Nutritional Considerations for the Neonate With Congenital Heart Disease.
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Mills KI, Kim JH, Fogg K, Goldshtrom N, Graham EM, Kataria-Hale J, Osborne SW, and Figueroa M
- Subjects
- Infant, Infant, Newborn, Humans, Parenteral Nutrition, Nutritional Requirements, Nutritional Support, Critical Illness therapy, Nutritional Status, Enteral Nutrition, Heart Defects, Congenital
- Abstract
The importance of nutrition in managing critically ill infants with congenital heart disease (CHD) is foundational to optimizing short- and long-term health outcomes. Growth failure and malnutrition are common in infants with CHD. The etiology of growth failure in this population is often multifactorial and may be related to altered metabolic demands, compromised blood flow to the intestine leading to nutrient malabsorption, cellular hypoxia, inadequate energy intake, and poor oral-motor skills. A dearth of high-quality studies and gaps in previously published guidelines have led to wide variability in nutrition practices that are locally driven. This review provides recommendations from the nutrition subgroup of the Neonatal Cardiac Care Collaborative for best evidence-based practices in the provision of nutritional support in infants with CHD. The review of evidence and recommendations focused on 6 predefined areas of clinical care for a target population of infants <6 months with CHD admitted to the ICU or inpatient ward. These areas include energy needs, nutrient requirements, enteral nutrition, feeding practice, parenteral nutrition, and outcomes. Future progress will be directed at quality improvement efforts to optimize perioperative nutrition management with an increasing emphasis on individualized care based on nutritional status, cardiorespiratory physiology, state of illness, and other vulnerabilities., (Copyright © 2022 by the American Academy of Pediatrics.)
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- 2022
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21. Identification of the Antigens Recognised by Colorectal Cancer Patients Using Sera from Patients Who Exhibit a Crohn's-like Lymphoid Reaction.
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Boncheva VB, Linnebacher M, Kdimati S, Draper H, Orchard L, Mills KI, O'Sullivan G, Tangney M, and Guinn BA
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- Carrier Proteins genetics, Gene Library, Humans, Immunoglobulin G genetics, Oncogene Proteins genetics, Colorectal Neoplasms, Crohn Disease genetics
- Abstract
A Crohn’s-like lymphoid reaction (CLR) is observed in about 15% of colorectal cancer (CRC) patients and is associated with favourable outcomes. To identify the immune targets recognised by CRC CLR patient sera, we immunoscreened a testes cDNA library with sera from three patients. Immunoscreening of the 18 antigens identified by SEREX with sera from normal donors showed that only the heavy chain of IgG3 (IGHG3) and a novel antigen we named UOB-COL-7, were solely recognised by sera from CRC CLR patients. ELISA showed an elevation in IgG3 levels in patients with CRC (p = 0.01). To extend our studies we analysed the expression of our SEREX-identified antigens using the RNA-sequencing dataset (GSE5206). We found that the transcript levels of multiple IGHG probesets were highly significant (p < 0.001) in their association with clinical features of CRC while above median levels of DAPK1 (p = 0.005) and below median levels of GTF2H5 (p = 0.004) and SH3RF2 (p = 0.02) were associated with improved overall survival. Our findings demonstrate the potential of SEREX-identified CRC CLR antigens to act as biomarkers for CRC and provide a rationale for their further characterization and validation., Competing Interests: The authors declare no conflict of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript, or in the decision to publish the results.
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- 2022
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22. Associations With Extubation Failure and Predictive Value of Risk Analytics Algorithms With Extubation Readiness Tests Following Congenital Cardiac Surgery.
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Hames DL, Sleeper LA, Bullock KJ, Feins EN, Mills KI, Laussen PC, and Salvin JW
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- Airway Extubation methods, Algorithms, Child, Humans, Male, Retrospective Studies, Risk Factors, Cardiac Surgical Procedures, Thoracic Surgery
- Abstract
Objectives: Extubation failure is associated with morbidity and mortality in children following cardiac surgery. Current extubation readiness tests (ERT) do not consider the nonrespiratory support provided by mechanical ventilation (MV) for children with congenital heart disease. We aimed to identify factors associated with extubation failure in children following cardiac surgery and assess the performance of two risk analytics algorithms for patients undergoing an ERT., Design: Retrospective cohort study., Setting: CICU at a tertiary-care children's hospital., Patients: Children receiving MV greater than 48 hours following cardiac surgery between January 1, 2017, and December 31, 2019., Interventions: None., Measurements and Main Results: Six hundred fifty encounters were analyzed with 49 occurrences (8%) of reintubation. Extubation failure occurred most frequently within 6 hours of extubation. On multivariable analysis, younger age (per each 3-mo decrease: odds ratio [OR], 1.06; 95% CI, 1.001-1.12), male sex (OR, 2.02; 95% CI, 1.03-3.97), Society of Thoracic Surgery-European Association for Cardiothoracic Surgery category 5 procedure (p equals to 0.005), and preoperative respiratory support (OR, 2.08; 95% CI, 1.09-3.95) were independently associated with unplanned reintubation. Our institutional ERT had low sensitivity to identify patients at risk for reintubation (23.8%; 95% CI, 9.7-47.6%). The addition of the inadequate delivery of oxygen (IDO2) index to the ERT increased the sensitivity by 19.0% (95% CI, -2.5 to 40.7%; p = 0.05), but the sensitivity remained low and the accuracy of the test dropped by 8.9% (95% CI, 4.7-13.1%; p < 0.01)., Conclusions: Preoperative respiratory support, younger age, and more complex operations are associated with postoperative extubation failure. IDO2 and IVCO2 provide unique cardiorespiratory monitoring parameters during ERTs but require further investigation before being used in clinical evaluation for extubation failure., (Copyright © 2022 by the Society of Critical Care Medicine and the World Federation of Pediatric Intensive and Critical Care Societies.)
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- 2022
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23. Cancer-Associated SF3B1 Mutations Confer a BRCA-Like Cellular Phenotype and Synthetic Lethality to PARP Inhibitors.
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Lappin KM, Barros EM, Jhujh SS, Irwin GW, McMillan H, Liberante FG, Latimer C, La Bonte MJ, Mills KI, Harkin DP, Stewart GS, and Savage KI
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- DNA Replication, Humans, Mutation, Phenotype, Synthetic Lethal Mutations, Neoplasms drug therapy, Neoplasms genetics, Phosphoproteins genetics, Poly(ADP-ribose) Polymerase Inhibitors pharmacology, Poly(ADP-ribose) Polymerase Inhibitors therapeutic use, RNA Splicing Factors genetics
- Abstract
Mutations in SF3B1 have been identified across several cancer types. This key spliceosome component promotes the efficient mRNA splicing of thousands of genes including those with crucial roles in the cellular response to DNA damage. Here, we demonstrate that depletion of SF3B1 specifically compromises homologous recombination (HR) and is epistatic with loss of BRCA1. More importantly, the most prevalent cancer-associated mutation in SF3B1, K700E, also affects HR efficiency and as a consequence, increases the cellular sensitivity to ionizing radiation and a variety of chemotherapeutic agents, including PARP inhibitors. In addition, the SF3B1 K700E mutation induced unscheduled R-loop formation, replication fork stalling, increased fork degradation, and defective replication fork restart. Taken together, these data suggest that tumor-associated mutations in SF3B1 induce a BRCA-like cellular phenotype that confers synthetic lethality to DNA-damaging agents and PARP inhibitors, which can be exploited therapeutically., Significance: The cancer-associated SF3B1K700E mutation induces DNA damage via generation of genotoxic R-loops and stalled replication forks, defective homologous recombination, and increased replication fork degradation, which can be targeted with PARP inhibitors., (©2022 The Authors; Published by the American Association for Cancer Research.)
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- 2022
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24. Fluid Restriction Contributes to Poor Nutritional Adequacy in Patients With Congenital Heart Disease Receiving Renal Replacement Therapy.
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Hames DL, Sleeper LA, Ferguson MA, Mehta NM, Salvin JW, and Mills KI
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- Child, Critical Illness, Humans, Intensive Care Units, Pediatric, Prospective Studies, Renal Replacement Therapy, Retrospective Studies, Acute Kidney Injury, Heart Defects, Congenital
- Abstract
Objectives: Critically ill patients receiving renal replacement therapy (RRT) in the pediatric cardiac intensive care unit (CICU) are at high risk for inadequate nutrition delivery. The objective of this study is to evaluate barriers to adequate energy and protein delivery in critically ill patients with congenital heart disease receiving RRT., Methods: This is a single-center retrospective cohort study of patients receiving RRT in the CICU from 2011 to 2019. Energy and protein adequacy was recorded over the first 7 days of RRT. Adequacy was defined as delivery of >80% of the energy and protein targets during this time period. Patients who achieved adequacy were compared to those who did not. Multivariable logistic regression models were constructed to determine factors independently associated with energy and protein adequacy while receiving RRT., Results: Sixty patients were included for analysis. Fifty-five patients (92%) achieved energy adequacy and 37 patients (62%) achieved protein adequacy. A higher weight-for-age z-score (WAZ) on admission to the CICU was the only independent predictor of inadequate energy intake (odds ratio 0.07, 95% confidence interval 0.01-0.58, P = .014); median WAZ was -1.17 versus +1.24 for those with adequate versus inadequate energy intake, respectively. Fluid restriction to <80% of maintenance fluid at the time of RRT initiation was more likely in patients with higher WAZ. Fluid restriction was the only independent predictor of inadequate protein intake (odds ratio 0.13, 95% confidence interval 0.02-0.7, P = .018); 5% versus 30% were fluid restricted in those with adequate versus inadequate protein intake, respectively. Azotemia was not associated with inadequate protein intake. Initiation of RRT did not allow for liberalization of fluid intake over the time period evaluated., Conclusions: Protein delivery was inadequate in 38% of children undergoing RRT in the CICU. Fluid restriction was associated with inadequate protein intake and higher WAZ was associated with inadequate energy intake., (Copyright © 2021 National Kidney Foundation, Inc. Published by Elsevier Inc. All rights reserved.)
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- 2022
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25. Survivin' Acute Myeloid Leukaemia-A Personalised Target for inv(16) Patients.
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Greiner J, Brown E, Bullinger L, Hills RK, Morris V, Döhner H, Mills KI, and Guinn BA
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- Disease-Free Survival, Female, Gene Expression Profiling, Humans, Leukemia, Myeloid, Acute genetics, Male, Neoplasm Proteins genetics, Oligonucleotide Array Sequence Analysis, Survival Rate, Survivin genetics, Databases, Nucleic Acid, Gene Expression Regulation, Leukemic, Leukemia, Myeloid, Acute metabolism, Leukemia, Myeloid, Acute mortality, Neoplasm Proteins biosynthesis, Survivin biosynthesis
- Abstract
Despite recent advances in therapies including immunotherapy, patients with acute myeloid leukaemia (AML) still experience relatively poor survival rates. The Inhibition of Apoptosis (IAP) family member, survivin, also known by its gene and protein name, Baculoviral IAP Repeat Containing 5 (BIRC5), remains one of the most frequently expressed antigens across AML subtypes. To better understand its potential to act as a target for immunotherapy and a biomarker for AML survival, we examined the protein and pathways that BIRC5 interacts with using the Kyoto Encyclopedia of Genes and Genomes (KEGG), search tool for recurring instances of neighbouring genes (STRING), WEB-based Gene Set Analysis Toolkit, Bloodspot and performed a comprehensive literature review. We then analysed data from gene expression studies. These included 312 AML samples in the Microarray Innovations In Leukemia (MILE) dataset. We found a trend between above median levels of BIRC5 being associated with improved overall survival (OS) but this did not reach statistical significance ( p = 0.077, Log-Rank). There was some evidence of a beneficial effect in adjusted analyses where above median levels of BIRC5 were shown to be associated with improved OS ( p = 0.001) including in Core Binding Factor (CBF) patients ( p = 0.03). Above median levels of BIRC5 transcript were associated with improved relapse free survival ( p < 0.0001). Utilisation of a second large cDNA microarray dataset including 306 AML cases, again showed no correlation between BIRC5 levels and OS, but high expression levels of BIRC5 correlated with worse survival in inv(16) patients ( p = 0.077) which was highly significant when datasets A and B were combined ( p = 0.001). In addition, decreased BIRC5 expression was associated with better clinical outcome ( p = 0.004) in AML patients exhibiting CBF mainly due to patients with inv(16) ( p = 0.007). This study has shown that BIRC5 expression plays a role in the survival of AML patients, this association is not apparent when we examine CBF patients as a cohort, but when those with inv(16) independently indicating that those patients with inv(16) would provide interesting candidates for immunotherapies that target BIRC5.
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- 2021
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26. Multiplex Screening for Interacting Compounds in Paediatric Acute Myeloid Leukaemia.
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Cairns LV, Lappin KM, Mutch A, Ali A, Matchett KB, and Mills KI
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- Antineoplastic Agents therapeutic use, Blotting, Western, Cell Line, Cell Line, Tumor, Cell Survival genetics, Drug Repositioning, Flow Cytometry, Humans, Leukemia, Myeloid, Acute drug therapy, Leukemia, Myeloid, Acute genetics, Mutation genetics, Cell Survival physiology, Leukemia, Myeloid, Acute metabolism
- Abstract
Paediatric acute myeloid leukaemia (AML) is a heterogeneous disease characterised by the malignant transformation of myeloid precursor cells with impaired differentiation. Standard therapy for paediatric AML has remained largely unchanged for over four decades and, combined with inadequate understanding of the biology of paediatric AML, has limited the progress of targeted therapies in this cohort. In recent years, the search for novel targets for the treatment of paediatric AML has accelerated in parallel with advanced genomic technologies which explore the mutational and transcriptional landscape of this disease. Exploiting the large combinatorial space of existing drugs provides an untapped resource for the identification of potential combination therapies for the treatment of paediatric AML. We have previously designed a multiplex screening strategy known as Multiplex Screening for Interacting Compounds in AML (MuSICAL); using an algorithm designed in-house, we screened all pairings of 384 FDA-approved compounds in less than 4000 wells by pooling drugs into 10 compounds per well. This approach maximised the probability of identifying new compound combinations with therapeutic potential while minimising cost, replication and redundancy. This screening strategy identified the triple combination of glimepiride, a sulfonylurea; pancuronium dibromide, a neuromuscular blocking agent; and vinblastine sulfate, a vinca alkaloid, as a potential therapy for paediatric AML. We envision that this approach can be used for a variety of disease-relevant screens allowing the efficient repurposing of drugs that can be rapidly moved into the clinic.
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- 2021
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27. Significance of NPM1 Gene Mutations in AML.
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Hindley A, Catherwood MA, McMullin MF, and Mills KI
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- DNA Methyltransferase 3A, Humans, Nucleophosmin, DNA (Cytosine-5-)-Methyltransferases genetics, Leukemia, Myeloid, Acute genetics, Mutation genetics, Nuclear Proteins genetics, fms-Like Tyrosine Kinase 3 genetics
- Abstract
The aim of this literature review is to examine the significance of the nucleophosmin 1 ( NPM1 ) gene in acute myeloid leukaemia (AML). This will include analysis of the structure and normal cellular function of NPM1, the type of mutations commonly witnessed in NPM1 , and the mechanism by which this influences the development and progression of AML. The importance of NPM1 mutation on prognosis and the treatment options available to patients will also be reviewed along with current guidelines recommending the rapid return of NPM1 mutational screening results and the importance of employing a suitable laboratory assay to achieve this. Finally, future developments in the field including research into new therapies targeting NPM1 mutated AML are considered.
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- 2021
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28. Erythropoietin in bone homeostasis-Implications for efficacious anemia therapy.
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Lappin KM, Mills KI, and Lappin TR
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- Animals, Erythropoiesis, Homeostasis, Humans, Mice, Osteoblasts, Osteoclasts, Receptors, Erythropoietin, Recombinant Proteins, Anemia drug therapy, Bone Remodeling, Erythropoietin
- Abstract
Bone homeostasis and hematopoiesis are irrevocably linked in the hypoxic environment of the bone marrow. Erythropoietin (Epo) regulates erythropoiesis by binding to its receptor, Epor, on erythroid progenitor cells. The continuous process of bone remodeling is achieved by the finely balanced activity of osteoblasts in bone synthesis and osteoclasts in bone resorption. Both osteoblasts and osteoclasts express functional Epors, but the underlying mechanism of Epo-Epor signaling in bone homeostasis is incompletely understood. Two recent publications have provided new insights into the contribution of endogenous Epo to bone homeostasis. Suresh et al examined Epo-Epor signaling in osteoblasts in bone formation in mice and Deshet-Unger et al investigated osteoclastogenesis arising from transdifferentiation of B cells. Both groups also studied bone loss in mice caused by exogenous human recombinant EPO-stimulated erythropoiesis. They found that either deletion of Epor in osteoblasts or conditional knockdown of Epor in B cells attenuates EPO-driven bone loss. These findings have direct clinical implications because patients on long-term treatment for anemia may have an increased risk of bone fractures. Phase 3 trials of small molecule inhibitors of the PHD enzymes (hypoxia inducible factor-prolyl hydroxylase inhibitors [HIF-PHIs]), such as Roxadustat, have shown improved iron metabolism and increased circulating Epo levels in a titratable manner, avoiding the supraphysiologic increases that often accompany intravenous EPO therapy. The new evidence presented by Suresh and Deshet-Unger and their colleagues on the effects of EPO-stimulated erythropoiesis on bone homeostasis seems likely to stimulate discussion on the relative merits and safety of EPO and HIF-PHIs., (© 2021 The Authors. STEM CELLS TRANSLATIONAL MEDICINE published by Wiley Periodicals LLC on behalf of AlphaMed Press.)
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- 2021
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29. The Impact of Epigenetic Modifications in Myeloid Malignancies.
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Venney D, Mohd-Sarip A, and Mills KI
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- Animals, Biomarkers, DNA Methylation, DNA Methyltransferase 3A, Disease Management, Disease Susceptibility, Epigenomics methods, Gene Expression Profiling, Histones metabolism, Humans, Molecular Targeted Therapy, Myelodysplastic Syndromes metabolism, Myelodysplastic Syndromes pathology, Myelodysplastic Syndromes therapy, Myeloproliferative Disorders metabolism, Myeloproliferative Disorders pathology, Myeloproliferative Disorders therapy, Epigenesis, Genetic, Gene Expression Regulation, Myelodysplastic Syndromes genetics, Myeloproliferative Disorders genetics
- Abstract
Myeloid malignancy is a broad term encapsulating myeloproliferative neoplasms (MPN), myelodysplastic syndrome (MDS) and acute myeloid leukaemia (AML). Initial studies into genomic profiles of these diseases have shown 2000 somatic mutations prevalent across the spectrum of myeloid blood disorders. Epigenetic mutations are emerging as critical components of disease progression, with mutations in genes controlling chromatin regulation and methylation/acetylation status. Genes such as DNA methyltransferase 3A ( DNMT3A ), ten eleven translocation methylcytosine dioxygenase 2 ( TET2 ), additional sex combs-like 1 ( ASXL1 ), enhancer of zeste homolog 2 ( EZH2 ) and isocitrate dehydrogenase 1/2 ( IDH1/2 ) show functional impact in disease pathogenesis. In this review we discuss how current knowledge relating to disease progression, mutational profile and therapeutic potential is progressing and increasing understanding of myeloid malignancies.
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- 2021
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30. Surgical Strategy for Truncus Arteriosus Repair and ECMO: Reply.
- Author
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Hames DL, Mills KI, and Teele SA
- Subjects
- Humans, Infant, Risk Factors, Truncus Arteriosus, Extracorporeal Membrane Oxygenation, Truncus Arteriosus, Persistent surgery
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- 2021
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31. NEMHESYS-European Perspective on the Implementation of Next-generation Sequencing Into Clinical Diagnostics.
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Serramito-Gómez I, Clarke KM, Rodríguez-Vicente AE, McGimpsey JE, Abáigar M, Díez CB, Benito R, Bullinger L, Mills KI, and Hernández Rivas JM
- Abstract
Competing Interests: The authors have no conflicts of interest to disclose.
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- 2021
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32. Extracorporeal Membrane Oxygenation in Infants Undergoing Truncus Arteriosus Repair.
- Author
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Hames DL, Mills KI, Thiagarajan RR, and Teele SA
- Subjects
- Female, Heart Defects, Congenital mortality, Heart Defects, Congenital surgery, Humans, Infant, Infant, Newborn, Male, Retrospective Studies, Risk Factors, Survival Rate, Extracorporeal Membrane Oxygenation, Truncus Arteriosus abnormalities, Truncus Arteriosus surgery
- Abstract
Background: Infants undergoing truncus arteriosus (TA) repair suffer one of the highest mortality rates of all congenital heart defects. Extracorporeal membrane oxygenation (ECMO) can support patients undergoing TA repair, but little is known about factors contributing to mortality in this cohort. The objective of this study was to identify risk factors for mortality in infants with TA requiring perioperative ECMO., Methods: Data from the Extracorporeal Life Support Organization from 2002 to 2017 for infants less than 60 days old undergoing TA repair were analyzed. Demographics, clinical characteristics, and ECMO characteristics and complications were compared between survivors and nonsurvivors. Multivariable logistic regression was used to evaluate independent risk factors for mortality., Results: Of 245 patients analyzed, 92 (37.6%) survived to discharge. Nonsurvivors had a lower weight and a longer ECMO duration. A higher proportion of nonsurvivors suffered complications on ECMO, including mechanical complications, circuit thrombus, bleeding, and need for renal replacement therapy. In multivariable analysis lower weight (odds ratio [OR], 0.56; 95% confidence interval [CI], 0.33-0.95), duration of ECMO (OR, 1.1; 95% CI, 1.02-1.18), need for renal replacement therapy (OR, 3.23; 95% CI, 1.68-6.2), cardiopulmonary resuscitation on ECMO (OR, 11.52; 95% CI, 1.3-102.33), and infection on ECMO (OR, 4.47; 95% CI, 1.2-16.64) were independently associated with mortality., Conclusions: Many factors associated with mortality for infants requiring perioperative ECMO with TA repair are related to complications suffered on ECMO. Thoughtful patient selection and meticulous ECMO management to prevent complications are essential in improving outcomes for these infants., (Copyright © 2021 The Society of Thoracic Surgeons. Published by Elsevier Inc. All rights reserved.)
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- 2021
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33. A compound combination screening approach with potential to identify new treatment options for paediatric acute myeloid leukaemia.
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Lappin KM, Davis L, Matchett KB, Ge Y, Mills KI, and Blayney JK
- Subjects
- Adolescent, Algorithms, Antineoplastic Agents pharmacology, Antineoplastic Combined Chemotherapy Protocols pharmacology, Biphenyl Compounds pharmacology, Cell Line, Tumor, Child, Child, Preschool, Databases, Genetic, Female, Humans, Leukemia, Myeloid, Acute metabolism, Male, Nitrophenols pharmacology, Piperazines pharmacology, Prognosis, Purines pharmacology, Remission Induction, Sulfonamides pharmacology, Drug Screening Assays, Antitumor methods, Leukemia, Myeloid, Acute drug therapy
- Abstract
Paediatric acute myeloid leukaemia (AML) is a heterogeneous disease characterised by genetics and morphology. The introduction of intensive chemotherapy treatments together with patient stratification and supportive therapy has resulted in a moderate improvement in patient prognosis. However, overall survival rates remain unacceptably poor, with only 65% of patients surviving longer than 5 years. Recently age-specific differences in AML have been identified, highlighting the need for tailored treatments for paediatric patients. Combination therapies have the potential to improve patient prognosis, while minimising harmful side-effects. In the laboratory setting, identifying key combinations from large drug libraries can be resource-intensive, prohibiting discovery and translation into the clinic. To minimise redundancy and maximise discovery, we undertook a multiplex screen of 80 apoptotic-inducing agents in paediatric AML pre-clinical models. The screen was designed using an all-pairs testing algorithm, which ensured that all pairs of compounds could be tested, while minimising the number of wells used. We identified a combination of ABT-737, a Bcl-2 family inhibitor and Purvalanol A, a CDK inhibitor, as a potential targeted therapy for AML patients with an MLL rearrangement and an FLT3-ITD. Our approach has the potential to reduce resource-intensity and time associated with the identification of novel combination therapies.
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- 2020
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34. Identification of Genes Whose Expression Overlaps Age Boundaries and Correlates with Risk Groups in Paediatric and Adult Acute Myeloid Leukaemia.
- Author
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Davis L, Mills KI, Orchard KH, and Guinn BA
- Abstract
Few studies have compared gene expression in paediatric and adult acute myeloid leukaemia (AML). In this study, we have analysed mRNA-sequencing data from two publicly accessible databases: (1) National Cancer Institute's Therapeutically Applicable Research to Generate Effective Treatments (NCI-TARGET), examining paediatric patients, and (2) The Cancer Genome Atlas (TCGA), examining adult patients with AML. With a particular focus on 144 known tumour antigens, we identified STEAP1 , SAGE1 , MORC4 , SLC34A2 and CEACAM3 as significantly different in their expression between standard and low risk paediatric AML patient subgroups, as well as between poor and good, and intermediate and good risk adult AML patient subgroups. We found significant differences in event-free survival (EFS) in paediatric AML patients, when comparing standard and low risk subgroups, and quartile expression levels of BIRC5 , MAGEF1 , MELTF , STEAP1 and VGLL4 . We found significant differences in EFS in adult AML patients when comparing intermediate and good, and poor and good risk adult AML patient subgroups and quartile expression levels of MORC4 and SAGE1 , respectively. When examining Kyoto Encyclopedia of Genes and Genomes (KEGG) (2016) pathway data, we found that genes altered in AML were involved in key processes such as the evasion of apoptosis ( BIRC5 , WNT1 ) or the control of cell proliferation ( SSX2IP , AML1-ETO ). For the first time we have compared gene expression in paediatric AML patients with that of adult AML patients. This study provides unique insights into the differences and similarities in the gene expression that underlies AML, the genes that are significantly differently expressed between risk subgroups, and provides new insights into the molecular pathways involved in AML pathogenesis.
- Published
- 2020
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35. Chronic loss of STAG2 leads to altered chromatin structure contributing to de-regulated transcription in AML.
- Author
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Smith JS, Lappin KM, Craig SG, Liberante FG, Crean CM, McDade SS, Thompson A, Mills KI, and Savage KI
- Subjects
- Cell Cycle Proteins genetics, Chromatin genetics, Humans, Mutation, Leukemia, Myeloid, Acute genetics, Myelodysplastic Syndromes
- Abstract
Background: The cohesin complex plays a major role in folding the human genome into 3D structural domains. Mutations in members of the cohesin complex are known early drivers of myelodysplastic syndromes (MDS) and acute myeloid leukaemia (AML), with STAG2 the most frequently mutated complex member., Methods: Here we use functional genomics (RNA-seq, ChIP-seq and HiChIP) to investigate the impact of chronic STAG2 loss on three-dimensional genome structure and transcriptional programming in a clinically relevant model of chronic STAG2 loss., Results: The chronic loss of STAG2 led to loss of smaller loop domains and the maintenance/formation of large domains that, in turn, led to altered genome compartmentalisation. These changes in genome structure resulted in altered gene expression, including deregulation of the HOXA locus and the MAPK signalling pathway, resulting in increased sensitivity to MEK inhibition., Conclusions: The altered genomic architecture driven by the chronic loss of STAG2 results in altered gene expression that may contribute to leukaemogenesis and may be therapeutically targeted.
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- 2020
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36. Stress ulcer prophylaxis versus placebo-a blinded randomized control trial to evaluate the safety of two strategies in critically ill infants with congenital heart disease (SUPPRESS-CHD).
- Author
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Mills KI, Albert BD, Bechard LJ, Duggan CP, Kaza A, Rakoff-Nahoum S, Vlamakis H, Sleeper LA, Newburger JW, Priebe GP, and Mehta NM
- Subjects
- Anti-Ulcer Agents adverse effects, Critical Illness, Cross Infection etiology, Double-Blind Method, Enterocolitis, Pseudomembranous etiology, Gastrointestinal Hemorrhage mortality, Histamine H2 Antagonists adverse effects, Humans, Infant, Intensive Care Units, Peptic Ulcer etiology, Peptic Ulcer mortality, Pilot Projects, Pneumonia etiology, Prospective Studies, Randomized Controlled Trials as Topic, Anti-Ulcer Agents administration & dosage, Gastrointestinal Hemorrhage prevention & control, Heart Defects, Congenital complications, Histamine H2 Antagonists administration & dosage, Peptic Ulcer prevention & control
- Abstract
Background: Critically ill infants with congenital heart disease (CHD) are often prescribed stress ulcer prophylaxis (SUP) to prevent upper gastrointestinal bleeding, despite the low incidence of stress ulcers and limited data on the safety and efficacy of SUP in infants. Recently, SUP has been associated with an increased incidence of hospital-acquired infections, community-acquired pneumonia, and necrotizing enterocolitis. The objective of this pilot study is to investigate the feasibility of performing a randomized controlled trial to assess the safety and efficacy of withholding SUP in infants with congenital heart disease admitted to the cardiac intensive care unit., Methods: A single center, prospective, double-blinded, randomized placebo-controlled pilot feasibility trial will be performed in infants with CHD admitted to the cardiac intensive care unit and anticipated to require respiratory support for > 24 h. Patients will be randomized to receive a histamine-2 receptor antagonist (H2RA) or placebo until they are discontinued from respiratory support. Randomization will be performed within 2 strata defined by admission type (medical or surgical) and age (neonate, age < 30 days, or infant, 1 month to 1 year). Allocation will be a 1:1 ratio using permuted blocks to ensure balanced allocations across the two treatment groups within each stratum. The primary outcomes include feasibility of screening, consent, timely allocation of study drug, and protocol adherence. The primary safety outcome is the rate of clinically significant upper gastrointestinal bleeding. The secondary outcomes are the difference in the relative and absolute abundance of the gut microbiota and functional microbial profiles between the two study groups. We plan to enroll 100 patients in this pilot study., Discussion: Routine use of SUP to prevent upper gastrointestinal bleeding in infants is controversial due to a low incidence of bleeding events and concern for adverse effects. The role of SUP in infants with CHD has not been examined, and there is equipoise on the risks and benefits of withholding this therapy. In addition, this therapy has been discontinued in other neonatal populations due to the concern for hospital-acquired infections and necrotizing enterocolitis. Furthermore, exploring changes to the microbiome after exposure to SUP may highlight the mechanisms by which SUP impacts potential microbial dysbiosis of the gut and its association with hospital-acquired infections. Assessment of the feasibility of a trial of withholding SUP in critically ill infants with CHD will facilitate planning of a larger multicenter trial of safety and efficacy of SUP in this vulnerable population., Trial Registration: ClinicalTrials.gov , NCT03667703. Registered 12 September 2018, https://clinicaltrials.gov/ct2/show/NCT03667703?term=SUPPRESS+CHD&draw=2&rank=1 . All WHO Trial Registration Data Set Criteria are met in this manuscript.
- Published
- 2020
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37. New targets for therapy: antigen identification in adults with B-cell acute lymphoblastic leukaemia.
- Author
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Jordaens S, Cooksey L, Freire Boullosa L, Van Tendeloo V, Smits E, Mills KI, Orchard KH, and Guinn BA
- Subjects
- Adult, Antigens, Neoplasm genetics, Antigens, Neoplasm isolation & purification, Antigens, Neoplasm metabolism, Antineoplastic Agents, Immunological therapeutic use, B-Lymphocytes drug effects, B-Lymphocytes immunology, B-Lymphocytes metabolism, Datasets as Topic, Gene Expression Profiling, Humans, Molecular Targeted Therapy methods, Oligonucleotide Array Sequence Analysis, Precursor B-Cell Lymphoblastic Leukemia-Lymphoma immunology, Remission Induction methods, Reverse Transcriptase Polymerase Chain Reaction, Treatment Outcome, Tumor Escape immunology, Antigens, Neoplasm immunology, Antineoplastic Agents, Immunological pharmacology, Immunotherapy methods, Precursor B-Cell Lymphoblastic Leukemia-Lymphoma therapy, Tumor Escape drug effects
- Abstract
Acute lymphoblastic leukaemia (ALL) in adults is a rare and difficult-to-treat cancer that is characterised by excess lymphoblasts in the bone marrow. Although many patients achieve remission with chemotherapy, relapse rates are high and the associated impact on survival devastating. Most patients receive chemotherapy and for those whose overall fitness supports it, the most effective treatment to date is allogeneic stem cell transplant that can improve overall survival rates in part due to a 'graft-versus-leukaemia' effect. However, due to the rarity of this disease, and the availability of mature B-cell antigens on the cell surface, few new cancer antigens have been identified in adult B-ALL that could act as targets to remove residual disease in first remission or provide alternative targets for escape variants if and when current immunotherapy strategies fail. We have used RT-PCR analysis, literature searches, antibody-specific profiling and gene expression microarray analysis to identify and prioritise antigens as novel targets for the treatment of adult B-ALL.
- Published
- 2020
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38. Serum profiling identifies ibrutinib as a treatment option for young adults with B-cell acute lymphoblastic leukaemia.
- Author
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Jordaens S, Cooksey L, Bonney S, Orchard L, Coutinho M, Van Tendeloo V, Mills KI, Orchard K, and Guinn BA
- Subjects
- Adenine pharmacology, Adenine therapeutic use, Adult, Female, Humans, Male, Middle Aged, Piperidines pharmacology, Young Adult, Adenine analogs & derivatives, Lymphoma, B-Cell drug therapy, Piperidines therapeutic use, Precursor B-Cell Lymphoblastic Leukemia-Lymphoma drug therapy
- Abstract
Acute lymphoblastic leukaemia (ALL) is a haematological malignancy that is characterized by the uncontrolled proliferation of immature lymphocytes. 80% of cases occur in children where ALL is well understood and treated. However it has a devastating affects on adults, where multi-agent chemotherapy is the standard of care with allogeneic stem cell transplantation for those who are eligible. New treatments are required to extend remission and prevent relapse to improve patient survival rates. We used serum profiling to compare samples from presentation adult B-ALL patients with age- and sex-matched healthy volunteer (HV) sera and identified 69 differentially recognised antigens (P ≤ 0·02). BMX, DCTPP1 and VGLL4 showed no differences in transcription between patients and healthy donors but were each found to be present at higher levels in B-ALL patient samples than HVs by ICC. BMX plays a crucial role in the Bruton's Tyrosine Kinase (BTK) pathway which is bound by the BTK inhibitor, ibrutinib, suggesting adult B-ALL would also be a worthy target patient group for future clinical trials. We have shown the utility of proto-array analysis of B-ALL patient sera, predominantly from young adults, to help characterise the B-ALL immunome and identified a new target patient population for existing small molecule therapy., (© 2020 British Society for Haematology and John Wiley & Sons Ltd.)
- Published
- 2020
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39. Pathways, Processes, and Candidate Drugs Associated with a Hoxa Cluster-Dependency Model of Leukemia.
- Author
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Kettyle LM, Lebert-Ghali CÉ, Grishagin IV, Dickson GJ, O'Reilly PG, Simpson DA, Bijl JJ, Mills KI, Sauvageau G, and Thompson A
- Abstract
High expression of the HOXA cluster correlates with poor clinical outcome in acute myeloid leukemias, particularly those harboring rearrangements of the mixed-lineage-leukemia gene ( MLLr ). Whilst decreased HOXA expression acts as a readout for candidate experimental therapies, the necessity of the HOXA cluster for leukemia maintenance has not been fully explored. Primary leukemias were generated in hematopoietic stem/progenitor cells from Cre responsive transgenic mice for conditional deletion of the Hoxa locus. Hoxa deletion resulted in reduced proliferation and colony formation in which surviving leukemic cells retained at least one copy of the Hoxa cluster, indicating dependency. Comparative transcriptome analysis of Hoxa wild type and deleted leukemic cells identified a unique gene signature associated with key pathways including transcriptional mis-regulation in cancer, the Fanconi anemia pathway and cell cycle progression. Further bioinformatics analysis of the gene signature identified a number of candidate FDA-approved drugs for potential repurposing in high HOXA expressing cancers including MLLr leukemias. Together these findings support dependency for an MLLr leukemia on Hoxa expression and identified candidate drugs for further therapeutic evaluation.
- Published
- 2019
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40. Methylation age as a correlate for allele burden, disease status, and clinical response in myeloproliferative neoplasm patients treated with vorinostat.
- Author
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McPherson S, Greenfield G, Andersen C, Grinfeld J, Hasselbalch HC, Nangalia J, Mills KI, and McMullin MF
- Subjects
- Adult, Aged, Aged, 80 and over, Cell Line, Tumor, DNA Methylation genetics, DNA, Neoplasm genetics, Female, Humans, Male, Middle Aged, Neoplasm Proteins genetics, DNA Methylation drug effects, DNA, Neoplasm metabolism, Epigenesis, Genetic drug effects, Gene Expression Regulation, Neoplastic drug effects, Neoplasm Proteins biosynthesis, Polycythemia Vera drug therapy, Polycythemia Vera genetics, Polycythemia Vera metabolism, Polycythemia Vera pathology, Thrombocythemia, Essential drug therapy, Thrombocythemia, Essential genetics, Thrombocythemia, Essential metabolism, Thrombocythemia, Essential pathology, Vorinostat administration & dosage
- Abstract
The myeloproliferative neoplasms (MPNs) are a heterogeneous group of clonal neoplastic disorders. Driver mutations in JAK2, CALR, and MPL genes have been identified in the majority of cases. Alongside these, an increasing number of genes are repeatedly identified as mutated in MPN. These, including ASXL1, TET2, DMNT3A, and EZH2, have key roles in epigenetic regulation. Dysregulation of epigenetic processes is therefore a key feature of MPN. Vorinostat is a pan histone deacetylase inhibitor (HDACi) that has been investigated in MPN. DNA methylation (DNAm) is a well-defined epigenetic mechanism of transcription modification. It is known to be affected by ageing, lifestyle, and disease. Epigenetic ageing signatures have been previously described allowing calculation of a methylation age (MA). In this study we examined the effect of vorinostat on MA in MPN cell lines and in patients with polycythaemia vera (PV) and essential thrombocythaemia (ET) treated with vorinostat as part of a clinical trial. An older MA was observed in patients with a higher JAK2 V617F allele burden and those with a longer duration of disease. PV patients had a MA older than that predicted whilst MA was younger than predicted in ET. Treatment with vorinostat resulted in a younger MA in PV patients and older MA in ET patients, in both cases a trend towards the normal chronological age. When MA change was compared against response, nonresponse was associated with a younger than predicted MA in ET patients and a higher than predicted MA in PV patients. The link between MA and JAK2 mutant allele burden implies that allele burden has a role not only in clinical phenotype and disease evolution in MPN patients, but also in the overall methylation landscape of the mutated cells., (Copyright © 2019 ISEH -- Society for Hematology and Stem Cells. Published by Elsevier Inc. All rights reserved.)
- Published
- 2019
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41. Altered splicing and cytoplasmic levels of tRNA synthetases in SF3B1-mutant myelodysplastic syndromes as a therapeutic vulnerability.
- Author
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Liberante FG, Lappin K, Barros EM, Vohhodina J, Grebien F, Savage KI, and Mills KI
- Subjects
- Amino Acyl-tRNA Synthetases metabolism, Cell Line, Tumor, Gene Editing methods, Gene Expression Profiling methods, HEK293 Cells, Humans, K562 Cells, Myelodysplastic Syndromes metabolism, Myelodysplastic Syndromes therapy, Phosphoproteins metabolism, Protein Biosynthesis genetics, Proteome genetics, Proteome metabolism, Proteomics methods, RNA Splicing Factors metabolism, Amino Acyl-tRNA Synthetases genetics, Cytoplasm enzymology, Mutation, Myelodysplastic Syndromes genetics, Phosphoproteins genetics, RNA Splicing, RNA Splicing Factors genetics
- Abstract
Myelodysplastic syndromes (MDS) are haematopoietic malignancies that are characterised by a heterogeneous clinical course. In recent years, sequencing efforts have uncovered recurrent somatic mutations within RNA splicing factors, including SF3B1, SRSF2, U2AF1 and ZRSR2. The most frequently mutated gene is SF3B1, mutated in 17% of MDS patients. While SF3B1 mutations and their effects on splicing have been well characterised, much remains to be explored about their more far-reaching effects on cellular homeostasis. Given that mRNA splicing and nuclear export are coordinated processes, we hypothesised that SF3B1 mutation might also affect export of certain mRNAs and that this may represent a targetable pathway for the treatment of SF3B1-mutant MDS. We used CRISPR/Cas9-genome editing to create isogenic cellular models. Comprehensive transcriptome and proteome profiling of these cells identified alterations in the splicing and export of components of the translational machinery, primarily tRNA synthetases, in response to the SF3B1 K700E mutation. While steady-state protein synthesis was unaffected, SF3B1 mutant cells were more sensitive to the clinically-relevant purine analogue, 8-azaguanine. In this study, we also demonstrated that 8-azaguanine affects splicing. Our results suggest that the simultaneous targeting of RNA metabolism and splicing by 8-azaguanine represents a therapeutic opportunity for SF3B1-mutant myelodysplastic syndromes.
- Published
- 2019
- Full Text
- View/download PDF
42. Physiologic effects of delayed sternal closure following stage 1 palliation.
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Mills KI, van den Bosch SJ, Gauvreau K, Allan CK, Thiagarajan RR, Hoganson DM, Baird CW, Nathan M, DiNardo JA, and Kheir JN
- Subjects
- Boston epidemiology, Female, Heart Defects, Congenital mortality, Hemodynamics, Hospitals, Pediatric, Humans, Infant, Infant, Newborn, Length of Stay, Male, Postoperative Complications mortality, Postoperative Complications prevention & control, Postoperative Period, Retrospective Studies, Sternotomy mortality, Sternotomy statistics & numerical data, Sternum surgery, Surgical Wound physiopathology, Treatment Outcome, Cardiac Surgical Procedures methods, Heart Defects, Congenital surgery, Postoperative Complications physiopathology, Sternotomy adverse effects
- Abstract
Background: Following stage 1 palliation, delayed sternal closure may be used as a technique to enhance thoracic compliance but may also prolong the length of stay and increase the risk of infection., Methods: We reviewed all neonates undergoing stage 1 palliation at our institution between 2010 and 2017 to describe the effects of delayed sternal closure., Results: During the study period, 193 patients underwent stage 1 palliation, of whom 12 died before an attempt at sternal closure. Among the 25 patients who underwent primary sternal closure, 4 (16%) had sternal reopening within 24 hours. Among the 156 infants who underwent delayed sternal closure at 4 [3,6] days post-operatively, 11 (7.1%) had one or more failed attempts at sternal closure. Patients undergoing primary sternal closure had a shorter duration of mechanical ventilation and intensive care unit length of stay. Patients who failed delayed sternal closure had a longer aortic cross-clamp time (123±42 versus 99±35 minutes, p=0.029) and circulatory arrest time (39±28 versus 19±17 minutes, p=0.0009) than those who did not fail. Failure of delayed sternal closure was also closely associated with Technical Performance Score: 1.3% of patients with a score of 1 failed sternal closure compared with 18.9% of patients with a score of 3 (p=0.0028). Among the haemodynamic and ventilatory parameters studied, only superior caval vein saturation following sternal closure was different between patients who did and did not fail sternal closure (30±7 versus 42±10%, p=0.002). All patients who failed sternal closure did so within 24 hours owing to hypoxaemia, hypercarbia, or haemodynamic impairment., Conclusion: When performed according to our current clinical practice, sternal closure causes transient and mild changes in haemodynamic and ventilatory parameters. Monitoring of SvO2 following sternal closure may permit early identification of patients at risk for failure.
- Published
- 2018
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43. Compositional analysis gives insight into leukaemia cell lines expression profiles compared to those within patient sub-groups.
- Author
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Blayney JK and Mills KI
- Subjects
- Cell Line, Tumor, Female, Humans, Leukemia genetics, Leukemia metabolism, Leukemia pathology, Male, Gene Expression Profiling, Gene Expression Regulation, Leukemic
- Published
- 2018
- Full Text
- View/download PDF
44. Identification of survivin as a promising target for the immunotherapy of adult B-cell acute lymphoblastic leukemia.
- Author
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Boullosa LF, Savaliya P, Bonney S, Orchard L, Wickenden H, Lee C, Smits E, Banham AH, Mills KI, Orchard K, and Guinn BA
- Abstract
B-cell acute lymphoblastic leukemia (B-ALL) is a rare heterogeneous disease characterized by a block in lymphoid differentiation and a rapid clonal expansion of immature, non-functioning B cells. Adult B-ALL patients have a poor prognosis with less than 50% chance of survival after five years and a high relapse rate after allogeneic haematopoietic stem cell transplantation. Novel treatment approaches are required to improve the outcome for patients and the identification of B-ALL specific antigens are essential for the development of targeted immunotherapeutic treatments. We examined twelve potential target antigens for the immunotherapy of adult B-ALL. RT-PCR indicated that only survivin and WT1 were expressed in B-ALL patient samples (7/11 and 6/11, respectively) but not normal donor control samples (0/8). Real-time quantitative (RQ)-PCR showed that survivin was the only antigen whose transcript exhibited significantly higher expression in the B-ALL samples ( n = 10) compared with healthy controls ( n = 4)( p = 0.015). Immunolabelling detected SSX2, SSX2IP, survivin and WT1 protein expression in all ten B-ALL samples examined, but survivin was not detectable in healthy volunteer samples. To determine whether these findings were supported by the analyses of a larger cohort of patient samples, we performed metadata analysis on an already published microarray dataset. We found that only survivin was significantly over-expressed in B-ALL patients ( n = 215) compared to healthy B-cell controls ( n = 12)( p = 0.013). We have shown that survivin is frequently transcribed and translated in adult B-ALL, but not healthy donor samples, suggesting this may be a promising target patient group for survivin-mediated immunotherapy., Competing Interests: CONFLICTS OF INTEREST None.
- Published
- 2017
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45. Polycomb protein RING1A limits hematopoietic differentiation in myelodysplastic syndromes.
- Author
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Palau A, Garz AK, Diesch J, Zwick A, Malinverni R, Valero V, Lappin K, Casquero R, Lennartsson A, Zuber J, Navarro T, Mills KI, Götze KS, and Buschbeck M
- Abstract
Genetic lesions affecting epigenetic regulators are frequent in myelodysplastic syndromes (MDS). Polycomb proteins are key epigenetic regulators of differentiation and stemness that act as two multimeric complexes termed polycomb repressive complexes 1 and 2, PRC1 and PRC2, respectively. While components and regulators of PRC2 such as ASXL1 and EZH2 are frequently mutated in MDS and AML, little is known about the role of PRC1. To analyze the role of PRC1, we have taken a functional approach testing PRC1 components in loss- and gain-of-function experiments that we found overexpressed in advanced MDS patients or dynamically expressed during normal hematopoiesis. This approach allowed us to identify the enzymatically active component RING1A as the key PRC1 component in hematopoietic stem cells and MDS. Specifically, we found that RING1A is expressed in CD34
+ bone marrow progenitor cells and further overexpressed in high-risk MDS patients. Knockdown of RING1A in an MDS-derived AML cell line facilitated spontaneous and retinoic acid-induced differentiation. Similarly, inactivation of RING1A in primary CD34+ cells augmented erythroid differentiation. Treatment with a small compound RING1 inhibitor reduced the colony forming capacity of CD34+ cells from MDS patients and healthy controls. In MDS patients higher RING1A expression associated with an increased number of dysplastic lineages and blasts. Our data suggests that RING1A is deregulated in MDS and plays a role in the erythroid development defect., Competing Interests: CONFLICTS OF INTEREST The authors declare no competing financial interests.- Published
- 2017
- Full Text
- View/download PDF
46. A molecular signature of dormancy in CD34 + CD38 - acute myeloid leukaemia cells.
- Author
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Al-Asadi MG, Brindle G, Castellanos M, May ST, Mills KI, Russell NH, Seedhouse CH, and Pallis M
- Abstract
Dormant leukaemia initiating cells in the bone marrow niche are a crucial therapeutic target for total eradication of acute myeloid leukaemia. To study this cellular subset we created and validated an in vitro model employing the cell line TF-1a, treated with Transforming Growth Factor β1 (TGFβ1) and a mammalian target of rapamycin inhibitor. The treated cells showed decreases in total RNA, Ki-67 and CD71, increased aldehyde dehydrogenase activity, forkhead box 03A (FOX03A) nuclear translocation and growth inhibition, with no evidence of apoptosis or differentiation. Using human genome gene expression profiling we identified a signature enriched for genes involved in adhesion, stemness/inhibition of differentiation and tumour suppression as well as canonical cell cycle regulation. The most upregulated gene was the osteopontin-coding gene SPP1. Dormant cells also demonstrated significantly upregulated beta 3 integrin (ITGB3) and CD44, as well as increased adhesion to their ligands vitronectin and hyaluronic acid as well as to bone marrow stromal cells. Immunocytochemistry of bone marrow biopsies of AML patients confirmed the positive expression of osteopontin in blasts near the para-trabecular bone marrow, whereas osteopontin was rarely detected in mononuclear cell isolates. Unsupervised hierarchical clustering of the dormancy gene signature in primary acute myeloid leukaemia samples from the Cancer Genome Atlas identified a cluster enriched for dormancy genes associated with poor overall survival., Competing Interests: CONFLICTS OF INTEREST The authors declare no conflicts of interest.
- Published
- 2017
- Full Text
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47. GATA2 regulates the erythropoietin receptor in t(12;21) ALL.
- Author
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Gaine ME, Sharpe DJ, Smith JS, Colyer HAA, Hodges VM, Lappin TR, and Mills KI
- Abstract
The t(12;21) (p13;q22) chromosomal translocation resulting in the ETV6/RUNX1 fusion gene is the most frequent structural cytogenetic abnormality in children with acute lymphoblastic leukemia (ALL). The erythropoietin receptor (EPOR), usually associated with erythroid progenitor cells, is highly expressed in ETV6/RUNX1 positive cases compared to other B-lineage ALL subtypes. Gene expression analysis of a microarray database and direct quantitative analysis of patient samples revealed strong correlation between EPOR and GATA2 expression in ALL, and higher expression of GATA2 in t(12;21) patients. The mechanism of EPOR regulation was mainly investigated using two B-ALL cell lines: REH, which harbor and express the ETV6/RUNX1 fusion gene; and NALM-6, which do not. Expression of EPOR was increased in REH cells compared to NALM-6 cells. Moreover, of the six GATA family members only GATA2 was differentially expressed with substantially higher levels present in REH cells. GATA2 was shown to bind to the EPOR 5'-UTR in REH, but did not bind in NALM-6 cells. Overexpression of GATA2 led to an increase in EPOR expression in REH cells only, indicating that GATA2 regulates EPOR but is dependent on the cellular context. Both EPOR and GATA2 are hypomethylated and associated with increased mRNA expression in REH compared to NALM-6 cells. Decitabine treatment effectively reduced methylation of CpG sites in the GATA2 promoter leading to increased GATA2 expression in both cell lines. Although Decitabine also reduced an already low level of methylation of the EPOR in NALM-6 cells there was no increase in EPOR expression. Furthermore, EPOR and GATA2 are regulated post-transcriptionally by miR-362 and miR-650, respectively. Overall our data show that EPOR expression in t(12;21) B-ALL cells, is regulated by GATA2 and is mediated through epigenetic, transcriptional and post-transcriptional mechanisms, contingent upon the genetic subtype of the disease.
- Published
- 2017
- Full Text
- View/download PDF
48. Integrated analysis of the molecular action of Vorinostat identifies epi-sensitised targets for combination therapy.
- Author
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Hay JF, Lappin K, Liberante F, Kettyle LM, Matchett KB, Thompson A, and Mills KI
- Abstract
Several histone deacetylase inhibitors including Vorinostat have received FDA approval for the treatment of haematological malignancies. However, data from these trials indicate that Vorinostat has limited efficacy as a monotherapy, prompting the need for rational design of combination therapies. A number of epi-sensitised pathways, including sonic hedgehog (SHH), were identified in AML cells by integration of global patterns of histone H3 lysine 9 (H3K9) acetylation with transcriptomic analysis following Vorinostat-treatment. Direct targeting of the SHH pathway with SANT-1, following Vorinostat induced epi-sensitisation, resulted in synergistic cell death of AML cells. In addition, xenograft studies demonstrated that combination therapy induced a marked reduction in leukemic burden compared to control or single agents. Together, the data supports epi-sensitisation as a potential component of the strategy for the rational development of combination therapies in AML., Competing Interests: CONFLICTS OF INTEREST The authors declare no conflicts of interest in relation to the work described in this manuscript.
- Published
- 2017
- Full Text
- View/download PDF
49. Erythropoietin drives breast cancer progression by activation of its receptor EPOR.
- Author
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Chan KK, Matchett KB, Coulter JA, Yuen HF, McCrudden CM, Zhang SD, Irwin GW, Davidson MA, Rülicke T, Schober S, Hengst L, Jaekel H, Platt-Higgins A, Rudland PS, Mills KI, Maxwell P, El-Tanani M, and Lappin TR
- Subjects
- Animals, Apoptosis drug effects, Apoptosis physiology, Breast Neoplasms metabolism, Cell Line, Tumor, Cell Proliferation drug effects, Cell Proliferation physiology, Disease Progression, Erythropoietin metabolism, Female, Heterografts, Humans, Mice, Mice, Nude, Signal Transduction drug effects, Signal Transduction physiology, Breast Neoplasms pathology, Erythropoietin pharmacology, Receptors, Erythropoietin metabolism
- Abstract
Breast cancer is a leading cause of cancer-related deaths. Anemia is common in breast cancer patients and can be treated with blood transfusions or with recombinant erythropoietin (EPO) to stimulate red blood cell production. Clinical studies have indicated decreased survival in some groups of cancer patients treated with EPO. Numerous tumor cells express the EPO receptor (EPOR), posing a risk that EPO treatment would enhance tumor growth, but the mechanisms involved in breast tumor progression are poorly understood.Here, we have examined the functional role of the EPO-EPOR axis in pre-clinical models of breast cancer. EPO induced the activation of PI3K/AKT and MAPK pathways in human breast cancer cell lines. EPOR knockdown abrogated human tumor cell growth, induced apoptosis through Bim, reduced invasiveness, and caused downregulation of MYC expression. EPO-induced MYC expression is mediated through the PI3K/AKT and MAPK pathways, and overexpression of MYC partially rescued loss of cell proliferation caused by EPOR downregulation. In a xenotransplantation model, designed to simulate recombinant EPO therapy in breast cancer patients, knockdown of EPOR markedly reduced tumor growth.Thus, our experiments in vitro and in vivo demonstrate that functional EPOR signaling is essential for the tumor-promoting effects of EPO and underline the importance of the EPO-EPOR axis in breast tumor progression.
- Published
- 2017
- Full Text
- View/download PDF
50. Decitabine-Vorinostat combination treatment in acute myeloid leukemia activates pathways with potential for novel triple therapy.
- Author
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Young CS, Clarke KM, Kettyle LM, Thompson A, and Mills KI
- Abstract
Despite advancements in cancer therapeutics, acute myeloid leukemia patients over 60 years old have a 5-year survival rate of less than 8%. In an attempt to improve this, epigenetic modifying agents have been combined as therapies in clinical studies. In particular combinations with Decitabine and Vorinostat have had varying degrees of efficacy. This study therefore aimed to understand the underlying molecular mechanisms of these agents to identify potential rational epi-sensitized combinations. Combined Decitabine-Vorinostat treatment synergistically decreased cell proliferation, induced apoptosis, enhanced acetylation of histones and further decreased DNMT1 protein with HL-60 cells showing a greater sensitivity to the combined treatment than OCI-AML3. Combination therapy led to reprogramming of unique target genes including AXL , a receptor tyrosine kinase associated with cell survival and a poor prognosis in AML, which was significantly upregulated following treatment. Therefore targeting AXL following epi-sensitization with Decitabine and Vorinostat may be a suitable triple combination. To test this, cells were treated with a novel triple combination therapy including BGB324, an AXL specific inhibitor. Triple combination increased the sensitivity of OCI-AML3 cells to Decitabine and Vorinostat as shown through viability assays and significantly extended the survival of mice transplanted with pretreated OCI-AML3 cells, while bioluminescence imaging showed the decrease in disease burden following triple combination treatment. Further investigation is required to optimize this triple combination, however, these results suggest that AXL is a potential marker of response to Decitabine-Vorinostat combination treatment and offers a new avenue of epigenetic combination therapies for acute myeloid leukemia., Competing Interests: CONFLICTS OF INTEREST The authors declare no conflicts of interest in relation to the work described in this manuscript.
- Published
- 2017
- Full Text
- View/download PDF
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