1. Heterogeneity of late endosome/lysosomes shown by multiplexed DNA-PAINT imaging.
- Author
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Bond C, Hugelier S, Xing J, Sorokina EM, and Lakadamyali M
- Subjects
- Humans, Niemann-Pick C1 Protein, Mitochondria metabolism, Lysosomal-Associated Membrane Protein 2 metabolism, Lysosomal-Associated Membrane Protein 2 genetics, Tetraspanin 30 metabolism, Tetraspanin 30 genetics, DNA metabolism, Cathepsin D metabolism, Cathepsin D genetics, Lysosomal-Associated Membrane Protein 1 metabolism, Lysosomal Membrane Proteins metabolism, Lysosomal Membrane Proteins genetics, Endosomes metabolism, Lysosomes metabolism
- Abstract
Late endosomes/lysosomes (LELs) are crucial for numerous physiological processes and their dysfunction is linked to many diseases. Proteomic analyses have identified hundreds of LEL proteins; however, whether these proteins are uniformly present on each LEL, or if there are cell-type-dependent LEL subpopulations with unique protein compositions is unclear. We employed quantitative, multiplexed DNA-PAINT super-resolution imaging to examine the distribution of seven key LEL proteins (LAMP1, LAMP2, CD63, Cathepsin D, TMEM192, NPC1, and LAMTOR4). While LAMP1, LAMP2, and Cathepsin D were abundant across LELs, marking a common population, most analyzed proteins were associated with specific LEL subpopulations. Our multiplexed imaging approach identified up to eight different LEL subpopulations based on their unique membrane protein composition. Additionally, our analysis of the spatial relationships between these subpopulations and mitochondria revealed a cell-type-specific tendency for NPC1-positive LELs to be closely positioned to mitochondria. Our approach will be broadly applicable to determining organelle heterogeneity with single organelle resolution in many biological contexts., (© 2024 Bond et al.)
- Published
- 2025
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