23 results on '"Lucie Dutil"'
Search Results
2. Chicken as Reservoir for Extraintestinal Pathogenic Escherichia coli in Humans, Canada
- Author
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Catherine Racicot Bergeron, Catharine Prussing, Patrick Boerlin, Danielle Daignault, Lucie Dutil, Richard J. Reid-Smith, George G. Zhanel, and Amee R. Manges
- Subjects
Escherichia coli ,molecular epidemiology ,urinary tract infections ,extraintestinal infections ,retail meat ,foodborne transmission ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
We previously described how retail meat, particularly chicken, might be a reservoir for extraintestinal pathogenic Escherichia coli (ExPEC) causing urinary tract infections (UTIs) in humans. To rule out retail beef and pork as potential reservoirs, we tested 320 additional E. coli isolates from these meats. Isolates from beef and pork were significantly less likely than those from chicken to be genetically related to isolates from humans with UTIs. We then tested whether the reservoir for ExPEC in humans could be food animals themselves by comparing geographically and temporally matched E. coli isolates from 475 humans with UTIs and from cecal contents of 349 slaughtered animals. We found genetic similarities between E. coli from animals in abattoirs, principally chickens, and ExPEC causing UTIs in humans. ExPEC transmission from food animals could be responsible for human infections, and chickens are the most probable reservoir.
- Published
- 2012
- Full Text
- View/download PDF
3. Ceftiofur Resistance in Salmonella enterica Serovar Heidelberg from Chicken Meat and Humans, Canada
- Author
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Lucie Dutil, Rebecca J. Irwin, Rita Finley, Lai King Ng, Brent P. Avery, Patrick Boerlin, Anne-Marie Bourgault, Linda Cole, Danielle Daignault, Andrea Desruisseau, Walter Demczuk, Linda Hoang, Greg B. Horsman, Johanne Ismail, Frances B. Jamieson, Anne Maki, Ana Pacagnella, and Dylan R. Pillai
- Subjects
Salmonella enterica serovar Heidelberg ,Escherichia coli ,antimicrobial resistance ,humans ,chickens ,Canada ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
The Canadian Integrated Program for Antimicrobial Resistance Surveillance describes a strong correlation (r = 0.9, p
- Published
- 2010
- Full Text
- View/download PDF
4. Food Reservoir for Escherichia coli Causing Urinary Tract Infections
- Author
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Caroline Vincent, Patrick Boerlin, Danielle Daignault, Charles M. Dozois, Lucie Dutil, Chrissi Galanakis, Richard J. Reid-Smith, Pierre-Paul Tellier, Patricia A. Tellis, Kim Ziebell, and Amee R. Manges
- Subjects
Escherichia coli ,molecular epidemiology ,urinary tract infections ,extraintestinal infections ,antimicrobial resistance ,retail meat ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
Closely related strains of Escherichia coli have been shown to cause extraintestinal infections in unrelated persons. This study tests whether a food reservoir may exist for these E. coli. Isolates from 3 sources over the same time period (2005–2007) and geographic area were compared. The sources comprised prospectively collected E. coli isolates from women with urinary tract infection (UTI) (n = 353); retail meat (n = 417); and restaurant/ready-to-eat foods (n = 74). E. coli were evaluated for antimicrobial drug susceptibility and O:H serotype and compared by using 4 different genotyping methods. We identified 17 clonal groups that contained E. coli isolates (n = 72) from >1 source. E. coli from retail chicken (O25:H4-ST131 and O114:H4-ST117) and honeydew melon (O2:H7-ST95) were indistinguishable from or closely related to E. coli from human UTIs. This study provides strong support for the role of food reservoirs or foodborne transmission in the dissemination of E. coli causing common community-acquired UTIs.
- Published
- 2010
- Full Text
- View/download PDF
5. Detection of Rare Antimicrobial Resistance Profiles by Active and Passive Surveillance Approaches.
- Author
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Alison E Mather, Richard Reeve, Dominic J Mellor, Louise Matthews, Richard J Reid-Smith, Lucie Dutil, Daniel T Haydon, and Stuart W J Reid
- Subjects
Medicine ,Science - Abstract
Antimicrobial resistance (AMR) surveillance systems are generally not specifically designed to detect emerging resistances and usually focus primarily on resistance to individual drugs. Evaluating the diversity of resistance, using ecological metrics, allows the assessment of sampling protocols with regard to the detection of rare phenotypes, comprising combinations of resistances. Surveillance data of phenotypic AMR of Canadian poultry Salmonella Heidelberg and swine Salmonella Typhimurium var. 5- were used to contrast active (representative isolates derived from healthy animals) and passive (diagnostic isolates) surveillance and assess their suitability for detecting emerging resistance patterns. Although in both datasets the prevalences of resistance to individual antimicrobials were not significantly different between the two surveillance systems, analysis of the diversity of entire resistance phenotypes demonstrated that passive surveillance of diagnostic isolates detected more unique phenotypes. Whilst the most appropriate surveillance method will depend on the relevant objectives, under the conditions of this study, passive surveillance of diagnostic isolates was more effective for the detection of rare and therefore potentially emerging resistance phenotypes.
- Published
- 2016
- Full Text
- View/download PDF
6. Antimicrobial Resistance among Salmonella and Shigella Isolates in Five Canadian Provinces (1997 to 2000)
- Author
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Leah J Martin, James Flint, André Ravel, Lucie Dutil, Kathryn Doré, Marie Louie, Frances Jamieson, and Sam Ratnam
- Subjects
Infectious and parasitic diseases ,RC109-216 ,Microbiology ,QR1-502 - Abstract
OBJECTIVE: To describe rates of antimicrobial resistance (AMR) among Salmonella and Shigella isolates reported in five Canadian provinces, focusing on clinically important antimicrobials.
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- 2006
- Full Text
- View/download PDF
7. Assessment of the impact of chitosan treatment on microorganisms in enology
- Author
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Cécile Miot-Sertier, Margot Paulin, Lucie Dutilh, Marine Lucas, Patricia Ballestra, Warren Albertin, Isabelle Masneuf-Pomarède, Joana Coulon, Virginie Moine, Amélie Vallet-Courbin, Julie Maupeu, and Marguerite Dols-Lafargue
- Subjects
Agriculture (General) ,S1-972 ,Plant culture ,SB1-1110 - Abstract
As part of the move to reduce SO2 in wines, the empirical use of chitosan to eliminate the spoilage yeast Brettanomyces bruxellensis is becoming a frequent alternative. Chitosan treatment has an effect on a number of microbial species, at least temporarily, but there is wide variability in response within strains of each species. In addition, the effectiveness of chitosan also depends on the physical and chemical parameters of the wine. However, when chitosan treatment is effective, it appears to be long-lasting.
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- 2023
- Full Text
- View/download PDF
8. Ciprofloxacin-Resistant Campylobacter spp. in Retail Chicken, Western Canada
- Author
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Carolee A. Carson, David F. Léger, Agnes Agunos, Lucie Dutil, Brent P. Avery, Anne E. Deckert, and E. Jane Parmley
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Microbiology (medical) ,Veterinary medicine ,medicine.medical_specialty ,Canada ,Veterinary Drugs ,Meat ,Epidemiology ,Population ,Campylobacteriosis ,lcsh:Medicine ,Biology ,medicine.disease_cause ,fluoroquinolone ,lcsh:Infectious and parasitic diseases ,Antibiotic resistance ,Ciprofloxacin ,Internal medicine ,Drug Resistance, Bacterial ,medicine ,Enrofloxacin ,Animals ,Humans ,lcsh:RC109-216 ,antimicrobial resistance ,education ,bacteria ,education.field_of_study ,British Columbia ,Campylobacter ,lcsh:R ,Dispatch ,retail chicken ,Tetracycline ,Antimicrobial ,medicine.disease ,Saskatchewan ,Anti-Bacterial Agents ,Infectious Diseases ,surveillance ,Food Microbiology ,Chickens ,medicine.drug - Abstract
Human campylobacteriosis, a notifiable disease in Canada, is the most common cause of bacterial enteric infections among persons in Canada; in 2005, the incidence rate of campylobacteriosis was 30.9 cases per 100,000 population(1). In chickens, Campylobacter spp. are not clinically relevant; however, the presence of these bacteria in poultry represents a potential threat to public health (2). Ciprofloxacin, a fluoroquinolone antimicrobial drug, is indicated for the treatment of respiratory, urinary, skin, and bone/joint infections and gastroenteritis in adults (3). In 2008 in Canada, fluoroquinolones were the fourth most frequently dispensed class of antimicrobial drug (dispensed for oral use by retail pharmacists; www.phac-aspc.gc.ca/cipars-picra/2008/4-eng.php#Hum0). A study investigating antimicrobial drug use and resistance in 2 health units in Ontario found that ciprofloxacin was the antimicrobial drug most frequently used to treat human campylobacteriosis (4). Fluoroquinolones are considered “critically” or “very” important to human medicine by the World Health Organization (5) and the Veterinary Drugs Directorate (VDD), Health Canada (6). The veterinary fluoroquinolones enrofloxacin and danofloxacin are VDD Category I antimicrobial drugs labeled for use in companion animals and beef cattle, but they are not labeled for use in poultry. The VDD has established a policy recommending against the extra-label use of Category I antimicrobial drugs in food-producing animals (7); however, Canada does not have legislation restricting this extra-label use.
- Published
- 2013
9. Antimicrobial Use and Resistance in Aquaculture: Findings of a Globally Administered Survey of Aquaculture-Allied Professionals
- Author
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Lucie Dutil, F. C. Uhland, Scott A. McEwen, Richard J. Reid-Smith, N. Tuševljak, Andrijana Rajić, Sophie St-Hilaire, and C. McClure
- Subjects
Antiinfective agent ,food.ingredient ,General Veterinary ,General Immunology and Microbiology ,Epidemiology ,business.industry ,Public Health, Environmental and Occupational Health ,Tilapia ,Drug resistance ,Biology ,Shrimp ,Biotechnology ,Infectious Diseases ,Antibiotic resistance ,food ,Aquaculture ,Environmental health ,Prawn ,business ,Catfish - Abstract
There is limited published information regarding antimicrobial use (AMU) and antimicrobial resistance (AMR) in aquaculture. Our objective was to determine the opinions of aquaculture-allied professionals around the world on the frequency of AMU and AMR in common aquatic species. The study questionnaire included five sections: respondent demographics, extent of AMU in aquaculture, frequency of observations of AMR in aquaculture, AMR monitoring and surveillance and antimicrobial susceptibility testing in various jurisdictions. It was administered in English and Spanish to 604 professionals in 25 countries and with varying expertise in aquaculture. The response rate was 33% (199/604). Over half of the participants had >10 years of experience in aquaculture: 70% (140/199) were involved in fish health/clinical work and their primary experience was with salmon, tilapia, trout, shrimp (including prawn) and/or catfish. Tetracycline use was reported by 28%, 46%, 18%, 37% and 9% of respondents working with catfish, salmon, tilapia, trout and shrimp, respectively. Resistance to tetracycline in one or more species of bacteria was reported as 'frequent-to-almost always' for the same aquaculture species by 39%, 28%, 17%, 52% and 36% of respondents, respectively. 'Frequent-to-almost always' use of quinolone was reported by 70% (32/46) and 67% (8/12) of respondents from the United States and Canada, respectively, where quinolone products are not approved for aquaculture, and extra-label fluoroquinolone use is either prohibited (United States) or discouraged (Canada). Similar frequencies of quinolone use were also reported by the majority of respondents from Europe [70% (7/10)] and Asia [90% (9/10)] where labelled indications exist. This baseline information can be used to prioritize research or surveillance for AMU and AMR in aquaculture.
- Published
- 2012
- Full Text
- View/download PDF
10. Chicken as Reservoir for Extraintestinal Pathogenic Escherichia coli in Humans, Canada
- Author
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George G. Zhanel, Catherine Bergeron, Catharine Prussing, Danielle Daignault, Lucie Dutil, Patrick Boerlin, Amee R. Manges, and Richard J. Reid-Smith
- Subjects
Disease reservoir ,Swine ,Epidemiology ,lcsh:Medicine ,medicine.disease_cause ,molecular epidemiology ,food animal reservoir ,retail meat ,bacteria ,Escherichia coli Infections ,0303 health sciences ,Extraintestinal Pathogenic Escherichia coli ,biology ,Transmission (medicine) ,food and beverages ,Middle Aged ,3. Good health ,extraintestinal infections ,Infectious Diseases ,sequence types ,Female ,Adult ,Microbiology (medical) ,Canada ,Meat ,Adolescent ,Urology ,chicken ,Microbial Sensitivity Tests ,Microbiology ,lcsh:Infectious and parasitic diseases ,Young Adult ,03 medical and health sciences ,Antibiotic resistance ,medicine ,Escherichia coli ,Animals ,Humans ,Food microbiology ,lcsh:RC109-216 ,antimicrobial resistance ,Disease Reservoirs ,030304 developmental biology ,Molecular epidemiology ,business.industry ,030306 microbiology ,Research ,lcsh:R ,food reservoir ,biology.organism_classification ,foodborne transmission ,Food Microbiology ,Cattle ,urinary tract infections ,business ,Chickens ,Bacteria - Abstract
Urinary tract infections can be difficult and expensive to treat. Most (85%) are caused by bacteria called E. coli. Historically, doctors have believed that these urinary tract E. coli came from the patient’s own intestines. But recently, Canadian researchers discovered that not only can these E. coli come from outside the patient’s intestines, they can actually come from outside the patient: from food. After comparing the genetic makeup of E. coli from human urinary tract infections with E. coli from retail meat (chicken, beef, and pork), they concluded that chickens are a likely source of E. coli and that the infections probably come directly from the chickens themselves, not from human contamination during food processing. Therefore, prevention of E. coli urinary tract infections in people might need to start on chicken farms., We previously described how retail meat, particularly chicken, might be a reservoir for extraintestinal pathogenic Escherichia coli (ExPEC) causing urinary tract infections (UTIs) in humans. To rule out retail beef and pork as potential reservoirs, we tested 320 additional E. coli isolates from these meats. Isolates from beef and pork were significantly less likely than those from chicken to be genetically related to isolates from humans with UTIs. We then tested whether the reservoir for ExPEC in humans could be food animals themselves by comparing geographically and temporally matched E. coli isolates from 475 humans with UTIs and from cecal contents of 349 slaughtered animals. We found genetic similarities between E. coli from animals in abattoirs, principally chickens, and ExPEC causing UTIs in humans. ExPEC transmission from food animals could be responsible for human infections, and chickens are the most probable reservoir.
- Published
- 2012
11. Ceftiofur Resistance in Salmonella enterica Serovar Heidelberg from Chicken Meat and Humans, Canada
- Author
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Andrea Desruisseau, Walter Demczuk, Lai King Ng, Rita Finley, Greg B. Horsman, Dylan R Pillai, Linda Cole, Frances B. Jamieson, Brent P. Avery, Rebecca Irwin, Johanne Ismail, Danielle Daignault, Linda Hoang, Lucie Dutil, Anne Maki, Patrick Boerlin, Ana Pacagnella, and Anne Marie Bourgault
- Subjects
Microbiology (medical) ,Serotype ,Veterinary medicine ,Salmonella ,Canada ,animal structures ,Meat ,Epidemiology ,lcsh:Medicine ,Drug resistance ,Microbial Sensitivity Tests ,medicine.disease_cause ,lcsh:Infectious and parasitic diseases ,Microbiology ,Antibiotic resistance ,Drug Resistance, Bacterial ,medicine ,polycyclic compounds ,Escherichia coli ,Animals ,Humans ,lcsh:RC109-216 ,antimicrobial resistance ,Salmonella enterica serovar Heidelberg ,expedited ,bacteria ,Poultry Diseases ,Cephalosporin Resistance ,Salmonella Infections, Animal ,biology ,Research ,lcsh:R ,Quebec ,Salmonella enterica ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,bacterial infections and mycoses ,Salmonella Food Poisoning ,Anti-Bacterial Agents ,Cephalosporins ,Infectious Diseases ,embryonic structures ,chickens ,sense organs ,Ceftiofur - Abstract
Use of this drug in chickens may limit effectiveness of cephalosporins in treating human infections., The Canadian Integrated Program for Antimicrobial Resistance Surveillance describes a strong correlation (r = 0.9, p
- Published
- 2010
12. Drug use and antimicrobial resistance among Escherichia coli and Enterococcus spp. isolates from chicken and turkey flocks slaughtered in Quebec, Canada
- Author
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Martine, Boulianne, Julie, Arsenault, Danielle, Daignault, Marie, Archambault, Ann, Letellier, and Lucie, Dutil
- Subjects
Turkeys ,animal structures ,animal diseases ,Quebec ,biochemical phenomena, metabolism, and nutrition ,Article ,Anti-Bacterial Agents ,Nova Scotia ,Surveys and Questionnaires ,Drug Resistance, Bacterial ,Escherichia coli ,Animals ,Humans ,New Brunswick ,Animal Husbandry ,Chickens ,Escherichia coli Infections ,Poultry Diseases - Abstract
An observational study was conducted of chicken and turkey flocks slaughtered at federal processing plants in the province of Quebec, Canada. The objectives were to estimate prevalence of drug use at hatchery and on farm and to identify antimicrobial resistance (AMR) in cecal Escherichia coli and Enterococcus spp. isolates and factors associated with AMR. Eighty-two chicken flocks and 59 turkey flocks were sampled. At the hatchery, the most used antimicrobial was ceftiofur in chickens (76% of flocks) and spectinomycin in turkeys (42% of flocks). Virginiamycin was the antimicrobial most frequently added to the feed in both chicken and turkey flocks. At least 1 E. coli isolate resistant to third-generation cephalosporins was present in all chicken flocks and in a third of turkey flocks. Resistance to tetracycline, streptomycin, and sulfisoxazole was detected in90% of flocks for E. coli isolates. Antimicrobial resistance (AMR) was observed to bacitracin, erythromycin, lincomycin, quinupristin-dalfopristin, and tetracycline in both chicken and turkey flocks for Enterococcus spp. isolates. No resistance to vancomycin was observed. The use of ceftiofur at hatchery was significantly associated with the proportion of ceftiofur-resistant E. coli isolates in chicken flocks. In turkey flocks, ceftiofur resistance was more frequent when turkeys were placed on litter previously used by chickens. Associations between drug use and resistance were observed with tetracycline (turkey) in E. coli isolates and with bacitracin (chicken and turkey), gentamicin (turkey), and tylosin (chicken) in Enterococcus spp. isolates. Further studies are needed to provide producers and veterinarians with alternative management practices and tools in order to reduce the use of antimicrobial feed additives in poultry.Une étude observationnelle portant sur des élevages de poulets et de dindons abattus dans des usines de transformation sous inspection fédérale situées dans la province de Québec (Canada) a été réalisée. Les objectifs étaient d’estimer la prévalence d’utilisation de médicaments au couvoir et en ferme, la prévalence de résistance aux antimicrobiens dans des isolats caecaux d’
- Published
- 2016
13. Detection of Rare Antimicrobial Resistance Profiles by Active and Passive Surveillance Approaches
- Author
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Richard Reeve, Stuart Reid, Alison E. Mather, Dominic J. Mellor, Richard J. Reid-Smith, Daniel T. Haydon, Louise Matthews, Lucie Dutil, and Apollo - University of Cambridge Repository
- Subjects
0301 basic medicine ,Bacterial Diseases ,Salmonella ,Epidemiology ,Swine ,Drug resistance ,medicine.disease_cause ,Pathology and Laboratory Medicine ,Poultry ,Medicine and Health Sciences ,Mammals ,Disease surveillance ,Multidisciplinary ,biology ,Ecology ,Resistance pattern ,Antimicrobials ,Drugs ,Salmonella enterica ,Agriculture ,3. Good health ,Bacterial Pathogens ,Anti-Bacterial Agents ,Infectious Diseases ,Medical Microbiology ,Population Surveillance ,Vertebrates ,Salmonella Typhimurium ,Medicine ,Pathogens ,Research Article ,Livestock ,Infectious Disease Control ,Ecological Metrics ,Science ,030106 microbiology ,Computational biology ,Microbial Sensitivity Tests ,Disease Surveillance ,Microbiology ,Birds ,03 medical and health sciences ,Antibiotic resistance ,Enterobacteriaceae ,Microbial Control ,Drug Resistance, Bacterial ,medicine ,Animals ,Microbial Pathogens ,Pharmacology ,Salmonella Infections, Animal ,Bacteria ,business.industry ,Ecology and Environmental Sciences ,Salmonella Heidelberg ,Organisms ,Biology and Life Sciences ,Species Diversity ,Models, Theoretical ,biology.organism_classification ,Biotechnology ,030104 developmental biology ,Infectious Disease Surveillance ,Amniotes ,Epidemiological surveillance ,Antimicrobial Resistance ,business - Abstract
Antimicrobial resistance (AMR) surveillance systems are generally not specifically designed to detect emerging resistances and usually focus primarily on resistance to individual drugs. Evaluating the diversity of resistance, using ecological metrics, allows the assessment of sampling protocols with regard to the detection of rare phenotypes, comprising combinations of resistances. Surveillance data of phenotypic AMR of Canadian poultry Salmonella Heidelberg and swine Salmonella Typhimurium var. 5- were used to contrast active (representative isolates derived from healthy animals) and passive (diagnostic isolates) surveillance and assess their suitability for detecting emerging resistance patterns. Although in both datasets the prevalences of resistance to individual antimicrobials were not significantly different between the two surveillance systems, analysis of the diversity of entire resistance phenotypes demonstrated that passive surveillance of diagnostic isolates detected more unique phenotypes. Whilst the most appropriate surveillance method will depend on the relevant objectives, under the conditions of this study, passive surveillance of diagnostic isolates was more effective for the detection of rare and therefore potentially emerging resistance phenotypes.
- Published
- 2016
14. Prevalence of zoonotic bacteria in wild and farmed aquatic species and seafood: a scoping study, systematic review, and meta-analysis of published research
- Author
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Judy Greig, Brent P. Avery, Nataša Tuševljak, Andrijana Rajić, Barbara Wilhelm, F. Carl Uhland, Lisa Waddell, Lucie Dutil, Scott A. McEwen, Natalia Cernicchiaro, Sarah C. Totton, and Wendy Wilkins
- Subjects
Risk ,Salmonella ,Zoology ,Animals, Wild ,Aquaculture ,medicine.disease_cause ,Applied Microbiology and Biotechnology ,Microbiology ,Foodborne Diseases ,Antibiotic resistance ,Salmon ,Decapoda ,Zoonoses ,medicine ,Escherichia coli ,Prevalence ,Animals ,Humans ,Shellfish ,Vibrio ,biology ,business.industry ,biology.organism_classification ,Food safety ,Shrimp ,Bivalvia ,Fishery ,Aeromonas ,Seafood ,Meta-analysis ,Prawn ,Animal Science and Zoology ,business ,Food Science - Abstract
Increased reliance on seafood has brought to light concerns regarding food safety, but the information to inform risk assessment or surveillance needs is lacking. A scoping study (ScS) was conducted to characterize published research investigating selected zoonotic bacteria and public health topics in various wild and farmed aquatic species and seafood. This was followed by a systematic review (SR) on selected bacteria (Aeromonas spp., generic Escherichia coli, Salmonella spp., and Vibrio spp.) and aquatic species (clams, mussels, oysters, salmon, and shrimp [including prawn]); a meta-analysis (MA) was conducted only at the retail level due to considerable variability among various pathogen/seafood combinations. The ScS revealed the most frequently investigated themes were farm-level prevalence and intervention research for Vibrio spp. and Aeromonas spp. Antimicrobial use (AMU) and the association between AMU and antimicrobial resistance were rarely investigated. The SR indicated a consistent lack of reporting regarding study methodology and results, precluding the use of many studies in and full benefits of MA. MA of Aeromonas, E. coli, and Salmonella prevalence in retail salmon resulted in pooled estimates of 13% (6-27%), 2% (0.1-11%), and 1% (0-5%), respectively. When MA of pathogen/seafood combination resulted in statistically significant heterogeneity (p0.1), median/range were reported at the region level. The results from our ScS, SR, and MA could be used for better design of future bacteriological surveys of seafood and as inputs for risk assessments or surveillance initiatives in this field.
- Published
- 2012
15. Zoonotic bacteria, antimicrobial use and antimicrobial resistance in ornamental fish: a systematic review of the existing research and survey of aquaculture-allied professionals
- Author
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Andrijana Rajić, F. C. Uhland, B. Mercier, N. Cernicchiaro, Lucie Dutil, N. Tuševljak, and M. Weir
- Subjects
Veterinary medicine ,Epidemiology ,Drug resistance ,Aquaculture ,Fish Diseases ,Antibiotic resistance ,Anti-Infective Agents ,Surveys and Questionnaires ,Zoonoses ,Drug Resistance, Bacterial ,medicine ,Animals ,Humans ,Mycobacterium marinum ,biology ,business.industry ,Zoonosis ,Fishes ,Outbreak ,Bacterial Infections ,Amoxicillin ,biology.organism_classification ,medicine.disease ,Antimicrobial ,Infectious Diseases ,business ,medicine.drug - Abstract
SUMMARYUsing systematic review methodology, global research reporting the frequency of zoonotic bacterial pathogens, antimicrobial use (AMU) and antimicrobial resistance (AMR) in ornamental fish, and human illness due to exposure to ornamental fish, was examined. A survey was performed to elicit opinions of aquaculture-allied personnel on the frequency of AMU and AMR in ornamental fish. The most commonly reported sporadic human infections were associated withMycobacterium marinum, whileSalmonellaParatyphi B var. Java was implicated in all reported outbreaks.Aeromonasspp. were most frequently investigated (n=10 studies) in 25 studies surveying ornamental fish from various sources. High levels of resistance were reported to amoxicillin, penicillin, tetracycline and oxytetracycline, which was also in agreement with the survey respondents' views. Studies on AMU were not found in our review. Survey respondents reported frequent use of quinolones, followed by tetracyclines, nitrofurans, and aminoglycosides. Recommendations for future surveillance and public education efforts are presented.
- Published
- 2011
16. CIPARS Farm Program: Surveillance of antimicrobial use and antimicrobial resistance in Canadian swine herds
- Author
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Lucie Dutil, Danielle Daignault, Rebecca Irwin, Sheryl P. Gow, Richard J. Reid-Smith, David F. Léger, Anne E. Deckert, and Brent P. Avery
- Subjects
Veterinary medicine ,Antibiotic resistance ,Antimicrobial use ,business.industry ,Herd ,Medicine ,business - Published
- 2009
- Full Text
- View/download PDF
17. Antimicrobial resistance among Salmonella and Shigella isolates in five Canadian provinces (1997 to 2000)
- Author
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James A Flint, Frances B. Jamieson, Marie Louie, Sam Ratnam, Leah J. Martin, Kathryn Doré, Lucie Dutil, and André Ravel
- Subjects
Microbiology (medical) ,Salmonella ,Drug resistance ,Infectious and parasitic diseases ,RC109-216 ,Biology ,medicine.disease_cause ,Antimicrobial ,Virology ,Microbiology ,QR1-502 ,Infectious Diseases ,Antibiotic resistance ,medicine ,Shigella ,Original Article - Abstract
OBJECTIVE:To describe rates of antimicrobial resistance (AMR) amongSalmonellaandShigellaisolates reported in five Canadian provinces, focusing on clinically important antimicrobials.METHODS:The authors retrospectively investigated AMR rates among 6219Salmonellaand 1673Shigellaisolates submitted to provincial public health laboratories in Alberta, Newfoundland and Labrador, Ontario, Prince Edward Island and Saskatchewan from 1997 to 2000; these isolates were estimated to represent 41% ofSalmonellacases and 72% ofShigellacases reported by the study provinces.RESULTS:AmongSalmonellaisolates, 27% (1704 of 6215) were resistant to ampicillin, 2.2% (135 of 6122) to trimethoprim/sulfamethoxazole, 1.5% (14 of 938) to nalidixic acid, 1.2% (one of 84) to lomafloxacin and 0.08% (five of 6163) to ciprofloxacin. AmongShigellaisolates, 70% (1144 of 1643) were resistant to trimethoprim/sulfamethoxazole, 65% (1079 of 1672) to ampicillin, 3.1% (eight of 262) to nalidixic acid, 0.49% (eight of 1636) to ciprofloxacin, 0.14% (one of 700) to ceftriaxone and 0.08% (one of 1292) to ceftazidime.CONCLUSIONS:Higher rates of resistance to clinically important antimicrobials (including ciprofloxacin) were observed among bothSalmonellaandShigellaisolates than has previously been reported. Current Canadian data on rates of AMR for these pathogens are required.
- Published
- 2006
18. L’identification des levures et bactéries œnologiques par spectrométrie de masse de type MALDI-TOF
- Author
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Amélie Vallet-Courbin, Marine Lucas, Lucie Dutilh, Cécile Miot-Sertier, Sara Windholtz, Patrick Lucas, Isabelle Masneuf-Pomarede, and Julie Maupeu
- Subjects
Agriculture (General) ,S1-972 ,Plant culture ,SB1-1110 - Abstract
La spectrométrie de masse de type MALDI-TOF a été adaptée afin d’être utilisée comme outil innovant d’identification au niveau de l’espèce des levures et bactéries isolées d’échantillons variés (moûts, vins, boissons). L’analyse d’un grand nombre de clones permet d’apprécier la diversité des espèces de levures, bactéries acétiques et lactiques présentes dès les phases pré-fermentaires, au cours des fermentations, pendant l’élevage ou après conditionnement. Dans le cas d’altération de produits, cet outil innovant participera à une meilleure maitrise des risques microbiologiques.
- Published
- 2022
19. Health status and risk factors associated with failure of passive transfer of immunity in newborn beef calves in Québec
- Author
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Virginie, Filteau, Emile, Bouchard, Gilles, Fecteau, Lucie, Dutil, and Denis, DuTremblay
- Subjects
Male ,Risk Factors ,Colostrum ,Health Status ,Immunoglobulin G ,Animals ,Cattle ,Female ,Scientific ,Immunity, Maternally-Acquired ,Physical Examination ,Animals, Suckling ,Bottle Feeding - Abstract
Risk factors associated with failure of passive transfer of immunity (FPT) were evaluated among newborn beef calves in Québec. Physical examination was performed on calves born of a normal calving and blood samples were collected for determination of health status and measurement of serum concentration of immunoglobulin (Ig) G1. Of 225 calves, from 45 herds, 19 % showed FPT (serum IgG1 concentration < 10.0 g/L). Calves born in a stanchion-stall were more likely to show FPT (OR: 10.2). Calves bottle-fed colostrum were less at risk for FPT (OR: 0.06). Calf gender, month of birth, dam parity, and dam body condition score were not associated with FPT. No association was detected between FPT and health status. Special care should be given to calves born from cows in a stanchion-stall to ensure adequate colostrum intake. Failure of passive transfer of immunity should be considered with other risk factors when investigating morbidity.
- Published
- 2003
20. Age-specific frequencies of antibodies to Escherichia coli verocytotoxins (Shiga toxins) 1 and 2 among urban and rural populations in southern Ontario
- Author
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Mariola Mascarenhas, Martin Petric, Jeff Wilson, Gerald S. Arbus, K. Rahn, Mohamed A. Karmali, Philip M. Sherman, Kerstin Ludwig, Pascal Michel, Lucie Dutil, Roger P. Johnson, and James B. Kaper
- Subjects
Adult ,Male ,Adolescent ,Immunoblotting ,Verocytotoxin ,Rural Health ,medicine.disease_cause ,Shiga Toxin 1 ,Shiga Toxin 2 ,chemistry.chemical_compound ,Shiga-like toxin ,medicine ,Immunology and Allergy ,Humans ,Child ,Escherichia coli ,Aged ,biology ,Incidence (epidemiology) ,Age Factors ,Urban Health ,Infant ,Middle Aged ,Age specific ,Antibodies, Bacterial ,Infectious Diseases ,chemistry ,VTEC ,Child, Preschool ,Immunology ,Hemolytic-Uremic Syndrome ,biology.protein ,Female ,Antibody ,Rural population ,Demography - Abstract
In 173 urban residents and 232 rural dairy-farm residents (age range, 0-70 years) who were stratified for age, the frequency of antiverocytotoxin 2 antibodies (VT2 Abs) (frequency in urban residents, 46%; frequency in rural residents, 65%) was significantly higher than that of antiverocytotoxin 1 antibodies (VT1 Abs) (frequency in urban residents, 12%; frequency in rural residents, 39%) (P< or =.001). The frequency of VT2 Abs (93%) was also significantly higher than that of VT1 Abs (50%) in 14 patients with hemolytic uremic syndrome (HUS) associated with verocytotoxin-producing Escherichia coli (VTEC) strains that expressed both toxins. In urban residents, the frequency of both antibodies tended to decrease between the first and the second decades of life, and it then increased until the fifth decade of life, before, in the case of VT2 Abs, decreasing again. This pattern, which inversely reflects the age-related incidence of HUS, is consistent with a role for antiverocytotoxin antibodies in protective immunity. In dairy-farm residents, peak frequencies of antibodies to both toxins occurred during the first decade of life and remained elevated for 3 decades before decreasing, a pattern consistent with frequent exposure to bovine VTEC from an early age.
- Published
- 2003
21. +Brettanomyces bruxellensis Displays Variable Susceptibility to Chitosan Treatment in Wine
- Author
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Margot Paulin, Cécile Miot-Sertier, Lucie Dutilh, Clément Brasselet, Cédric Delattre, Guillaume Pierre, Pascal Dubessay, Philippe Michaud, Thierry Doco, Patricia Ballestra, Warren Albertin, Isabelle Masneuf-Pomarède, Virginie Moine, Joana Coulon, Amélie Vallet-Courbin, Julie Maupeu, and Marguerite Dols-Lafargue
- Subjects
chitosan ,Brettanomyces bruxellensis ,antiseptic ,wine ,spoilage ,volatile phenols ,Microbiology ,QR1-502 - Abstract
Brettanomyces bruxellensis is the main spoilage microbial agent in red wines. The use of fungal chitosan has been authorized since 2009 as a curative treatment to eliminate this yeast in conventional wines and in 2018 in organic wines. As this species is known to exhibit great genetic and phenotypic diversity, we examined whether all the strains responded the same way to chitosan treatment. A collection of 53 strains of B. bruxellensis was used. In the conditions of the reference test, all were at least temporarily affected by the addition of chitosan to wine, with significant decrease of cultivable population. Some (41%) were very sensitive and no cultivable yeast was detected in wine or lees after 3 days of treatment, while others (13%) were tolerant and, after a slight drop in cultivability, resumed growth between 3 and 10 days and remained able to produce spoilage compounds. There were also many strains with intermediate behavior. The strain behavior was only partially linked to the strain genetic group. This behavior was little modulated by the physiological state of the strain or the dose of chitosan used (within the limits of the authorized doses). On the other hand, for a given strain, the sensitivity to chitosan treatment was modulated by the chitosan used and by the properties of the wine in which the treatment was carried out.
- Published
- 2020
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22. Population Dynamics and Yeast Diversity in Early Winemaking Stages without Sulfites Revealed by Three Complementary Approaches
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Sara Windholtz, Lucie Dutilh, Marine Lucas, Julie Maupeu, Amélie Vallet-Courbin, Laura Farris, Joana Coulon, and Isabelle Masneuf-Pomarède
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MALDI-TOF MS ,oenological laboratory specific database ,winemaking without SO2 ,bioprotection ,metabarcoding HTS ,quantitative-PCR ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Nowadays, the use of sulfur dioxide (SO2) during the winemaking process is a controversial societal issue. In order to reduce its use, various alternatives are emerging, in particular bioprotection by adding yeasts, with different impacts on yeast microbiota in early winemaking stages. In this study, quantitative-PCR and metabarcoding high-throughput sequencing (HTS) were combined with MALDI-TOF-MS to monitor yeast population dynamic and diversity in the early stages of red winemaking process without sulfites and with bioprotection by Torulaspora delbrueckii and Metschnikowia pulcherrima addition. By using standard procedures for yeast protein extraction and a laboratory-specific database of wine yeasts, identification at species level of 95% of the isolates was successfully achieved by MALDI-TOF-MS, thus confirming that it is a promising method for wine yeast identification. The different approaches confirmed the implantation and the niche occupation of bioprotection leading to the decrease of fungal communities (HTS) and Hanseniaspora uvarum cultivable population (MALDI-TOF MS). Yeast and fungi diversity was impacted by stage of maceration and, to a lesser extent, by bioprotection and SO2, resulting in a modification of the nature and abundance of the operational taxonomic units (OTUs) diversity.
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- 2021
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23. Two different Oenococcus oeni lineages are associated to either red or white wines in Burgundy: genomics and metabolomics insights
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Hugo Campbell-Sills, Mariette El Khoury, Marine Gammacurta, Cécile Miot-Sertier, Lucie Dutilh, Jochen Vestner, Vittorio Capozzi, David Sherman, Christophe Hubert, Olivier Claisse, Giuseppe Spano, Gilles de Revel, and Patrick Lucas
- Subjects
Oenococcus oeni ,malolactic fermentation ,comparative genomics ,metabolomics ,Agriculture ,Botany ,QK1-989 - Abstract
Oenococcus oeni is the bacterium most often associated with spontaneous malolactic fermentation (MLF) of wine. During MLF, malic acid is transformed into lactic acid and several metabolites are modified, modulating wine’s total acidity and improving its sensory properties. Previous works have suggested that certain genetic groups of O. oeni strains are associated to different kinds of products. In the present study we have spotted two groups of strains isolated mainly from Burgundy wines, one associated to red wines and the other to white wines. Sequencing 14 genomes of red and white wine strains revealed that they share a common ancestor that probably colonised two different substrates –red and white wine-associated environments–, diverging over time and disseminating to various regions. Their capacity to perform MLF and modify the volatile profile of wine was determined by fermenting a chardonnay wine and analysing its volatile fraction with a non-targeted metabolomics approach by GC-MS. The strains had a different impact on the volatile composition depending on their group of origin. These results show for the first time a correspondence between the product of origin of the strains and the volatile profile of the wines they produce. Furthermore, the genetic features that might be implied in these different phenotypes are examined.
- Published
- 2017
- Full Text
- View/download PDF
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