409 results on '"Lepailleur A"'
Search Results
2. Structure Studies of $^{13}\text{Be}$ from the $^{12}$Be(d,p) reaction in inverse kinematics on a solid deuteron target
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Kovoor, J., Jones, K. L., Hooker, J., Vostinar, M., Kanungo, R., Pain, S. D., Alcorta, M., Allen, J., Andreoiu, C., Atar, L., Bardayan, D. W., Bhattacharjee, S. S., Blankstein, D., Burbadge, C., Burcher, S., Catford, W. N., Cha, S., Chae, K., Connolly, D., Davids, B., Esker, N. E., Garcia, F. H., Gillespie, S., Ghimire, R., Gula, A., Hackman, G., Hallam, S., Hellmich, M., Henderson, J., Holl, M., Jassal, P., King, S., Knight, T., Kruecken, R., Lepailleur, A., Liang, J., Morrison, L., O'Malley, P. D., Pereira-Lopez, X., Psaltis, A., Radich, A., Refsgaard, J., Shotter, A. C., Williams, M., and Workman, O.
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Nuclear Experiment - Abstract
The low-lying structure of $^{13}$Be has remained an enigma for decades. Despite numerous experimental and theoretical studies, large inconsistencies remain. Being both unbound, and one neutron away from $^{14}$Be, the heaviest bound beryllium nucleus, $^{13}$Be is difficult to study through simple reactions with weak radioactive ion beams or more complex reactions with stable-ion beams. Here, we present the results of a study using the $^{12}$Be(d,p)$^{13}$Be reaction in inverse kinematics using a 9.5~MeV per nucleon $^{12}$Be beam from the ISAC-II facility. The solid deuteron target of IRIS was used to achieve an increased areal thickness compared to conventional deuterated polyethylene targets. The Q-value spectrum below -4.4~MeV was analyzed using a Bayesian method with GEANT4 simulations. A three-point angular distribution with the same Q-value gate was fit with a mixture of $s$- and $p$-wave, $s$- and $d$-wave, or pure $p$-wave transfer. The Q-value spectrum was also compared with GEANT simulations obtained using the energies and widths of states reported in four previous works. It was found that our results are incompatible with works that revealed a wide $5/2^+$ resonance but shows better agreement with ones that reported a narrower width., Comment: 10 pages, 5 figures
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- 2023
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3. Dynamic microfluidic single-cell screening identifies pheno-tuning compounds to potentiate tuberculosis therapy
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Maxime Mistretta, Mena Cimino, Pascal Campagne, Stevenn Volant, Etienne Kornobis, Olivier Hebert, Christophe Rochais, Patrick Dallemagne, Cédric Lecoutey, Camille Tisnerat, Alban Lepailleur, Yann Ayotte, Steven R. LaPlante, Nicolas Gangneux, Monika Záhorszká, Jana Korduláková, Sophie Vichier-Guerre, Frédéric Bonhomme, Laura Pokorny, Marvin Albert, Jean-Yves Tinevez, and Giulia Manina
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Science - Abstract
Abstract Drug-recalcitrant infections are a leading global-health concern. Bacterial cells benefit from phenotypic variation, which can suggest effective antimicrobial strategies. However, probing phenotypic variation entails spatiotemporal analysis of individual cells that is technically challenging, and hard to integrate into drug discovery. In this work, we develop a multi-condition microfluidic platform suitable for imaging two-dimensional growth of bacterial cells during transitions between separate environmental conditions. With this platform, we implement a dynamic single-cell screening for pheno-tuning compounds, which induce a phenotypic change and decrease cell-to-cell variation, aiming to undermine the entire bacterial population and make it more vulnerable to other drugs. We apply this strategy to mycobacteria, as tuberculosis poses a major public-health threat. Our lead compound impairs Mycobacterium tuberculosis via a peculiar mode of action and enhances other anti-tubercular drugs. This work proves that harnessing phenotypic variation represents a successful approach to tackle pathogens that are increasingly difficult to treat.
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- 2024
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4. X-ray burst studies with the JENSA gas jet target
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Schmidt Konrad, Chipps Kelly A., Ahn Sunghoon, Allen Jacob M., Ayoub Sara, Bardayan Daniel W., Blackmon Jeffrey C., Blankstein Drew, Browne Justin, Cha Soomi, Chae Kyung YUK, Cizewski Jolie, Deibel Catherine M., Deleeuw Eric, Gomez Orlando, Greife Uwe, Hager Ulrike, Hall Matthew R., Jones Katherine L., Kontos Antonios, Kozub Raymond L., Lee Eunji, Lepailleur Alex, Linhardt Laura E., Matos Milan, Meisel Zach, Montes Fernando, O’Malley Patrick D., Ong Wei Jia, Pain Steven D., Sachs Alison, Schatz Hendrik, Schmitt Kyle T., Smith Karl, Smith Michael S., Soares de Bem Natã F., Thompson Paul J., Toomey Rebecca, and Walter David
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Physics ,QC1-999 - Abstract
When a neutron star accretes hydrogen and helium from the outer layers of its companion star, thermonuclear burning enables the αp-process as a break out mechanism from the hot CNO cycle. Model calculations predict (α, p) reaction rates significantly affect both the light curves and elemental abundances in the burst ashes. The Jet Experiments in Nuclear Structure and Astrophysics (JENSA) gas jet target enables the direct measurement of previously inaccessible (α,p) reactions with radioactive beams provided by the rare isotope re-accelerator ReA3 at the National Superconducting Cyclotron Laboratory (NSCL), USA. JENSA is going to be the main target for the Recoil Separator for Capture Reactions (SECAR) at the Facility for Rare Isotope Beams (FRIB). Commissioning of JENSA and first experiments at Oak Ridge National Laboratory (ORNL) showed a highly localized, pure gas target with a density of ∼1019 atoms per square centimeter. Preliminary results are presented from the first direct cross section measurement of the 34Ar(α, p)37 K reaction at NSCL.
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- 2017
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5. Informing neutron capture nucleosynthesis on short-lived nuclei with (d,p) reactions
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Cizewski Jolie A., Ratkiewicz Andrew, Escher Jutta E., Lepailleur Alexandre, Pain Steven D., and Potel Gregory
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Physics ,QC1-999 - Abstract
Neutron capture on unstable nuclei is important in understanding abundances in r-process nucleosynthesis. Previously, the non-elastic breakup of the deuteron in the (d,p) reaction has been shown to provide a neutron that can be captured by the nucleus and the gamma-ray decay of the subsequent compound nucleus can be modelled to predict the gamma-ray decay of the compound nucleus in the (n,γ) reaction. Preliminary results from the 95Mo(d,pγ) reaction in normal kinematics support the (d,pγ) reaction as a valid surrogate for neutron capture. The techniques to measure the (d,pγ) reaction in inverse kinematics have been developed.
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- 2017
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6. Use of Bayesian Optimization to Understand the Structure of Nuclei
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Hooker, J., Kovoor, J., Jones, K. L., Kanungo, R., Alcorta, M., Allen, J., Andreoiu, C., Atar, L., Bardayan, D. W., Bhattacharjee, S. S., Blankstein, D., Burbadge, C., Burcher, S., Catford, W. N., Cha, S., Chae, K., Connolly, D., Davids, B., Esker, N., Garcia, F. H., Gillespie, S., Ghimire, R., Gula, A., Hackman, G., Hallam, S., Hellmich, M., Henderson, J., Holl, M., Jassal, P., King, S., Knight, T., Kruecken, R., Lepailleur, A., Liang, J., Morrison, L., O'Malley, P. D., Pain, S. D., Pereira-Lopez, X., Psaltis, A., Radich, A., Shotter, A. C., Vostinar, M., Williams, M., and Workman, O.
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Physics - Computational Physics ,Nuclear Experiment - Abstract
Monte Carlo simulations are widely used in nuclear physics to model experimental systems. In cases where there are significant unknown quantities, such as energies of states, an iterative process of simulating and fitting is often required to describe experimental data. We describe a Bayesian approach to fitting experimental data, designed for data from a $^{12}$Be(d,p) reaction measurement, using simulations made with GEANT4. Q-values from the $^{12}$C(d,p) reaction to well-known states in $^{13}$C are compared with simulations using BayesOpt. The energies of the states were not included in the simulation to reproduce the situation for $^{13}$Be where the states are poorly known. Both cases had low statistics and significant resolution broadening owing to large proton energy losses in the solid deuterium target. Excitation energies of the lowest three excited states in $^{13}$C were extracted to better than 90 keV, paving a way for extracting information on $^{13}$Be., Comment: 8 pages, 6 figures
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- 2021
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7. Coulomb and nuclear excitations of $^{70}$Zn and $^{68}$Ni at intermediate energy
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Calinescu, S., Sorlin, O., Matea, I., Carstoiu, F., Dao, D., Nowacki, F., de Angelis, G., Astabatyan, R., Bagchi, S., Borcea, C., Borcea, R., Cáceres, L., Ciemála, M., Clément, E., Dombrádi, Z., Franchoo, S., Gottardo, A., Grévy, S., Guerin, H., Harakeh, M. N., Harca, I. M., Kamalou, O., Kmiecik, M., Krasznahorkay, A., Krzysiek, M., Kuti, I., Lepailleur, A., Lukyanov, S., Maj, A., Maslov, V., Mazurek, K., Morfouace, P., Mrazek, J., Negoita, F., Niikura, M., Olivier, L., Penionzhkevich, Y., Perrot, L., Petrone, C., Podolyák, Z., Rigollet, C, Roger, T., Rotaru, F., Sohler, D., Stanoiu, M., Stefan, I., Stuhl, L., Thomas, J. C., Vajta, Z., Vandebrouck, M., and Wieland, O.
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Nuclear Experiment ,Nuclear Theory - Abstract
The reduced transition probabilities $B(E2; 0^+_{g.s.}\rightarrow2_1^+,2^+_2)$ in $^{70}$Zn and the full $B(E2; 0^+_{g.s.}\rightarrow2^+)$ strength up to S$_n$=7.79 MeV in $^{68}$Ni have been determined at the LISE/GANIL facility using the Coulomb-excitation technique at intermediate beam energy on a $^{208}$Pb target. The $\gamma$ rays emitted in-flight were detected with an array of 46 BaF$_2$ crystals. The angles of the deflected nuclei were determined in order to disentangle and extract the Coulomb and nuclear contributions to the excitation of the 2$^+$ states. The measured $B(E2; 0^+_{g.s.}\rightarrow2_1^+)$ of 1432(124) e$^2$fm$^4$ for $^{70}$Zn falls in the lower part of the published values which clustered either around 1600 or above 2000 e$^2$fm$^4$, while the $B(E2; 0^+_{g.s.}\rightarrow2^+_2)$ of 53(7) e$^2$fm$^4$ agrees very well with the two published values. The relatively low $B(E2; 0^+_{g.s.}\rightarrow2_1^+)$ of 301(38) e$^2$fm$^4$ for $^{68}$Ni agrees with previous studies and confirms a local magicity at $Z=28, N=40$. Combining the results of the low-energy spectra of $^{68}$Ni and $^{70}$Zn and their shell-model interpretations, it is interesting to notice that four different shapes (spherical, oblate, prolate and triaxial) are present. Finally, a summed $E2$ strength of only about 150 e$^2$fm$^4$ has been found experimentally at high excitation energy, likely due to proton excitations across the $Z=28$ gap. The experimental distribution of this high-energy $E2$ excitation agrees with SM calculations, but its strength is about two times weaker.
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- 2021
8. Towards a partial order graph for interactive pharmacophore exploration: extraction of pharmacophores activity delta
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Etienne Lehembre, Johanna Giovannini, Damien Geslin, Alban Lepailleur, Jean-Luc Lamotte, David Auber, Abdelkader Ouali, Bruno Cremilleux, Albrecht Zimmermann, Bertrand Cuissart, and Ronan Bureau
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Hasse diagram ,Partial order graph ,Pharmacophore ,BCR-ABL ,Siblings ,Activity delta ,Information technology ,T58.5-58.64 ,Chemistry ,QD1-999 - Abstract
Abstract This paper presents a novel approach called Pharmacophore Activity Delta for extracting outstanding pharmacophores from a chemogenomic dataset, with a specific focus on a kinase target known as BCR-ABL. The method involves constructing a Hasse diagram, referred to as the pharmacophore network, by utilizing the subgraph partial order as an initial step, leading to the identification of pharmacophores for further evaluation. A pharmacophore is classified as a ‘Pharmacophore Activity Delta’ if its capability to effectively discriminate between active vs inactive molecules significantly deviates (by at least δ standard deviations) from the mean capability of its related pharmacophores. Among the 1479 molecules associated to BCR-ABL binding data, 130 Pharmacophore Activity Delta were identified. The pharmacophore network reveals distinct regions associated with active and inactive molecules. The study includes a discussion on representative key areas linked to different pharmacophores, emphasizing structure–activity relationships.
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- 2023
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9. Use of Bayesian Optimization to understand the structure of nuclei
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Hooker, J, Kovoor, J, Jones, KL, Kanungo, R, Alcorta, M, Allen, J, Andreoiu, C, Atar, L, Bardayan, DW, Bhattacharjee, SS, Blankstein, D, Burbadge, C, Burcher, S, Catford, WN, Cha, S, Chae, K, Connolly, D, Davids, B, Esker, N, Garcia, FH, Gillespie, S, Ghimire, R, Gula, A, Hackman, G, Hallam, S, Hellmich, M, Henderson, J, Holl, M, Jassal, P, King, S, Knight, T, Kruecken, R, Lepailleur, A, Liang, J, Morrison, L, O’Malley, PD, Pain, SD, Pereira-Lopez, X, Psaltis, A, Radich, A, Shotter, AC, Vostinar, M, Williams, M, and Workman, O
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Affordable and Clean Energy ,Bayesian optimization ,Geant4 simulation ,Low-energy reactions ,Stable ion beam ,Radioactive ion beam ,Transfer reaction ,Direct reaction ,Atomic ,Molecular ,Nuclear ,Particle and Plasma Physics ,Geochemistry ,Interdisciplinary Engineering ,Applied Physics - Abstract
Monte Carlo simulations are widely used in nuclear physics to model experimental systems. In cases where there are significant unknown quantities, such as energies of states, an iterative process of simulating and fitting is often required to describe experimental data. We describe a Bayesian approach to fitting experimental data, designed for data from a 12Be(d,p) reaction measurement, using simulations made with GEANT4. Q-values from the 12C(d,p) reaction to well-known states in 13C are compared with simulations using BayesOpt. The energies of the states were not included in the simulation to reproduce the situation for 13Be where the states are poorly known. Both cases had low statistics and significant resolution broadening owing to large proton energy losses in the solid deuterium target. Excitation energies of the lowest three excited states in 13C were extracted to better than 90 keV, paving a way for extracting information on 13Be.
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- 2022
10. The Structure of $^{33}$Si and the magicity of the N=20 gap at Z=14
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Jongile, S., Lemasson, A., Sorlin, O., Wiedeking, M., Papka, P., Bazin, D., Borcea, C., Borcea, R., Gade, A., Iwasaki, H., Khan, E., Lepailleur, A., Mutschler, A., Nowacki, F., Recchia, F., Roger, T., Rotaru, F., Stanoiu, M., Stroberg, S. R., Tostevin, J. A., Vandebrouck, M., Weisshaar, D., and Wimmer, K.
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Nuclear Experiment - Abstract
The structure of $^{33}$Si was studied by a one-neutron knockout reaction from a $^{34}$Si beam at 98.5 MeV/u incident on a $^{9}$Be target. The prompt $\gamma$-rays following the de-excitation of $^{33}$Si were detected using the GRETINA $\gamma$-ray tracking array while the reaction residues were identified on an event-by-event basis in the focal plane of the S800 spectrometer at NSCL (National Superconducting Cyclotron Laboratory). The presently derived spectroscopic factor values, $C^2S$, for the 3/2$^+$ and 1/2$^+$ states, corresponding to a neutron removal from the $0d_{3/2}$ and $1s_{1/2}$ orbitals, agree with shell model calculations and point to a strong $N=20$ shell closure. Three states arising from the more bound $0d_{5/2}$ orbital are proposed, one of which is unbound by about 930 keV. The sensitivity of this experiment has also confirmed a weak population of 9/2$^-$ and 11/2$_{1,2}^-$ final states, which originate from a higher-order process. This mechanism may also have populated, to some fraction, the 3/2$^-$ and 7/2$^-$ negative-parity states, which hinders a determination of the $C^2S$ values for knockout from the normally unoccupied $1p_{3/2}$ and $0f_{7/2}$ orbits.
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- 2020
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11. Towards a partial order graph for interactive pharmacophore exploration: extraction of pharmacophores activity delta
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Lehembre, Etienne, Giovannini, Johanna, Geslin, Damien, Lepailleur, Alban, Lamotte, Jean-Luc, Auber, David, Ouali, Abdelkader, Cremilleux, Bruno, Zimmermann, Albrecht, Cuissart, Bertrand, and Bureau, Ronan
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- 2023
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12. New $\gamma$-ray Transitions Observed in $^{19}$Ne with Implications for the $^{15}$O($\alpha$,$\gamma$)$^{19}$Ne Reaction Rate
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Hall, M. R., Bardayan, D. W., Baugher, T., Lepailleur, A., Pain, S. D., Ratkiewicz, A., Ahn, S., Allen, J. M., Anderson, J. T., Ayangeakaa, A. D., Blackmon, J. C., Burcher, S., Carpenter, M. P., Cha, S. M., Chae, K. Y., Chipps, K. A., Cizewski, J. A., Febbraro, M., Hall, O., Hu, J., Jiang, C. L., Jones, K. L., Lee, E. J., O'Malley, P. D., Ota, S., Rasco, B. C., Santiago-Gonzalez, D., Seweryniak, D., Sims, H., Smith, K., Tan, W. P., Thompson, P., Thornsberry, C., Varner, R. L., Walter, D., Wilson, G. L., and Zhu, S.
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Nuclear Experiment - Abstract
The $^{15}$O($\alpha$,$\gamma$)$^{19}$Ne reaction is responsible for breakout from the hot CNO cycle in Type I x-ray bursts. Understanding the properties of resonances between $E_x = 4$ and 5 MeV in $^{19}$Ne is crucial in the calculation of this reaction rate. The spins and parities of these states are well known, with the exception of the 4.14- and 4.20-MeV states, which have adopted spin-parities of 9/2$^-$ and 7/2$^-$, respectively. Gamma-ray transitions from these states were studied using triton-$\gamma$-$\gamma$ coincidences from the $^{19}$F($^{3}$He,$t\gamma$)$^{19}$Ne reaction measured with GODDESS (Gammasphere ORRUBA Dual Detectors for Experimental Structure Studies) at Argonne National Laboratory. The observed transitions from the 4.14- and 4.20-MeV states provide strong evidence that the $J^\pi$ values are actually 7/2$^-$ and 9/2$^-$, respectively. These assignments are consistent with the values in the $^{19}$F mirror nucleus and in contrast to previously accepted assignments.
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- 2019
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13. Key $^{19}$Ne states identified affecting $\gamma$-ray emission from $^{18}$F in novae
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Hall, M. R., Barbadian, D. W., Baugher, T., Lepailleur, A., Pain, S. D., Ratkiewicz, A., Ahn, S., Allen, J. M., Anderson, J. T., Ayangeakaa, A. D., Blackmon, J. C., Burcher, S., Carpenter, M. P., Cha, S. M., Chae, K. Y., Chipps, K. A., Cizewski, J. A., Febbraro, M., Hall, O., Hu, J., Jiang, C. L., Jones, K. L., Lee, E. J., O'Malley, P. D., Ota, S., Rasco, B. C., Santiago-Gonzalez, D., Seweryniak, D., Sims, H., Smith, K., Tan, W. P., Thompson, P., Thornsberry, C., Varner, R. L., Walter, D., Wilson, G. L., and Zhu, S.
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Nuclear Experiment - Abstract
Detection of nuclear-decay $\gamma$ rays provides a sensitive thermometer of nova nucleosynthesis. The most intense $\gamma$-ray flux is thought to be annihilation radiation from the $\beta^+$ decay of $^{18}$F, which is destroyed prior to decay by the $^{18}$F($p$,$\alpha$)$^{15}$O reaction. Estimates of $^{18}$F production had been uncertain, however, because key near-threshold levels in the compound nucleus, $^{19}$Ne, had yet to be identified. This Letter reports the first measurement of the $^{19}$F($^{3}$He,$t\gamma$)$^{19}$Ne reaction, in which the placement of two long-sought 3/2$^+$ levels is suggested via triton-$\gamma$-$\gamma$ coincidences. The precise determination of their resonance energies reduces the upper limit of the rate by a factor of $1.5-17$ at nova temperatures and reduces the average uncertainty on the nova detection probability by a factor of 2.1., Comment: 6 pages, 4 figures
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- 2019
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14. Selecting Outstanding Patterns Based on Their Neighbourhood.
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Etienne Lehembre, Ronan Bureau, Bruno Crémilleux, Bertrand Cuissart, Jean Luc Lamotte, Alban Lepailleur, Abdelkader Ouali, and Albrecht Zimmermann
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- 2022
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15. Selecting Outstanding Patterns Based on Their Neighbourhood
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Lehembre, Etienne, Bureau, Ronan, Cremilleux, Bruno, Cuissart, Bertrand, Lamotte, Jean-Luc, Lepailleur, Alban, Ouali, Abdelkader, Zimmermann, Albrecht, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Woeginger, Gerhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Bouadi, Tassadit, editor, Fromont, Elisa, editor, and Hüllermeier, Eyke, editor
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- 2022
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16. Development of the (d,n) proton-transfer reaction in inverse kinematics for structure studies
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Jones, K. L., Thornsberry, C., Allen, J., Atencio, A., Bardayan, D. W., Blankstein, D., Burcher, S., Carter, A. B., Chipps, K. A., Cizewski, J. A., Cox, I., Elledge, Z., Febbraro, M., Fijalkowska, A., Grzywacz, R., Hall, M. R., King, T. T., Lepailleur, A., Madurga, M., Marley, S. T., O'Malley, P. D., Paulauskas, S. V., Pain, S. D., Peters, W. A., Reingold, C., Smith, K., Taylor, S., Tan, W., Vostinar, M., and Walter, D.
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Nuclear Experiment - Abstract
Transfer reactions have provided exciting opportunities to study the structure of exotic nuclei and are often used to inform studies relating to nucleosynthesis and applications. In order to benefit from these reactions and their application to rare ion beams (RIBs) it is necessary to develop the tools and techniques to perform and analyze the data from reactions performed in inverse kinematics, that is with targets of light nuclei and heavier beams. We are continuing to expand the transfer reaction toolbox in preparation for the next generation of facilities, such as the Facility for Rare Ion Beams (FRIB), which is scheduled for completion in 2022. An important step in this process is to perform the (d,n) reaction in inverse kinematics, with analyses that include Q-value spectra and differential cross sections. In this way, proton-transfer reactions can be placed on the same level as the more commonly used neutron-transfer reactions, such as (d,p), (9Be,8Be), and (13C,12C). Here we present an overview of the techniques used in (d,p) and (d,n), and some recent data from (d,n) reactions in inverse kinematics using stable beams of 12C and 16O., Comment: 9 pages, 4 figures, presented at the XXXV Mazurian Lakes Conference on Physics, Piaski, Poland
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- 2017
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17. Effective proton-neutron interaction near the drip line from unbound states in $^{25,26}$F
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Vandebrouck, M., Lepailleur, A., Sorlin, O., Aumann, T., Caesar, C., Holl, M., Panin, V., Wamers, F., Stroberg, S. R., Holt, J. D., Santos, F. De Oliveira, Alvarez-Pol, H., Atar, L., Avdeichikov, V., Beceiro-Novo, S., Bemmerer, D., Benlliure, J., Bertulani, C. A., Bogner, S. K., Boillos, J. M., Boretzky, K., Borge, M. J. G., Caamano, M., Casarejos, E., Catford, W., Cederkäll, J., Chartier, M., Chulkov, L., Cortina-Gil, D., Cravo, E., Crespo, R., Pramanik, U. Datta, Fernandez, P. Diaz, Dillmann, I., Elekes, Z., Enders, J., Ershova, O., Estrade, A., Farinon, F., Fraile, L. M., Freer, M., Galaviz, D., Geissel, H., Gernhauser, R., Gibelin, J., Golubev, P., Göbel, K., Hagdahl, J., Heftrich, T., Heil, M., Heine, M., Heinz, A., Henriques, A., Hergert, H., Hufnagel, A., Ignatov, A., Johansson, H. T., Jonson, B., Kahlbow, J., Kalantar-Nayestanaki, N., Kanungo, R., Kelic-Heil, A., Knyazev, A., Kröll, T., Kurz, N., Labiche, M., Langer, C., Bleis, T. Le, Lemmon, R., Lindberg, S., Machado, J., Marganiec, J., Marques, F. M., Movsesyan, A., Nacher, E., Najafi, M., Nikolskii, E., Nilsson, T., Nociforo, C., Paschalis, S., Perea, A., Petri, M., Pietri, S., Plag, R., Reifarth, R., Ribeiro, G., Rigollet, C., Röder, M., Rossi, D., Savran, D., Scheit, H., Schwenk, A., Simon, H., Syndikus, I., Taylor, J., Tengblad, O., Thies, R., Togano, Y., Velho, P., Volkov, V., Wagner, A., Weick, H., Wheldon, C., Wilson, G., Winfield, J. S., Woods, P., Yakorev, D., Zhukov, M., Zilges, A., and Zuber, K.
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Nuclear Experiment - Abstract
Background: Odd-odd nuclei, around doubly closed shells, have been extensively used to study proton-neutron interactions. However, the evolution of these interactions as a function of the binding energy, ultimately when nuclei become unbound, is poorly known. The $^{26}$F nucleus, composed of a deeply bound $\pi0d\_{5/2}$ proton and an unbound $\nu0d\_{3/2}$ neutron on top of an $^{24}$O core, is particularly adapted for this purpose. The coupling of this proton and neutron results in a $J^{\pi} = 1^{+}\_1 - 4^{+}\_1$ multiplet, whose energies must be determined to study the influence of the proximity of the continuum on the corresponding proton-neutron interaction. The $J^{\pi} = 1^{+}\_1, 2^{+}\_1,4^{+}\_1$ bound states have been determined, and only a clear identification of the $J^{\pi} =3^{+}\_1$ is missing.Purpose: We wish to complete the study of the $J^{\pi} = 1^{+}\_1 - 4^{+}\_1$ multiplet in $^{26}$F, by studying the energy and width of the $J^{\pi} =3^{+}\_1$ unbound state. The method was firstly validated by the study of unbound states in $^{25}$F, for which resonances were already observed in a previous experiment.Method: Radioactive beams of $^{26}$Ne and $^{27}$Ne, produced at about $440A$\,MeV by the FRagment Separator at the GSI facility, were used to populate unbound states in $^{25}$F and $^{26}$F via one-proton knockout reactions on a CH$\_2$ target, located at the object focal point of the R$^3$B/LAND setup. The detection of emitted $\gamma$-rays and neutrons, added to the reconstruction of the momentum vector of the $A-1$ nuclei, allowed the determination of the energy of three unbound states in $^{25}$F and two in $^{26}$F. Results: Based on its width and decay properties, the first unbound state in $^{25}$F is proposed to be a $J^{\pi} = 1/2^-$ arising from a $p\_{1/2}$ proton-hole state. In $^{26}$F, the first resonance at 323(33)~keV is proposed to be the $J^{\pi} =3^{+}\_1$ member of the $J^{\pi} = 1^{+}\_1 - 4^{+}\_1$ multiplet. Energies of observed states in $^{25,26}$F have been compared to calculations using the independent-particle shell model, a phenomenological shell-model, and the ab initio valence-space in-medium similarity renormalization group method.Conclusions: The deduced effective proton-neutron interaction is weakened by about 30-40\% in comparison to the models, pointing to the need of implementing the role of the continuum in theoretical descriptions, or to a wrong determination of the atomic mass of $^{26}$F., Comment: 14 pages, 7 figures, 3 tables, submitted to PRC
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- 2017
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18. A proton density bubble in the doubly magic $^{34}$Si nucleus
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Mutschler, A., Lemasson, A., Sorlin, O., Bazin, D., Borcea, C., Borcea, R., Dombradi, Z., Ebran, J. P., Gade, A., Iwasaki, H., Khan, E., Lepailleur, A., Recchia, F., Roger, T., Rotaru, F., Sohler, D., Stanoiu, M., Stroberg, S. R., Tostevin, J. A., Vandebrouck, M., Weisshaar, D., and Wimmer, K.
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Nuclear Experiment - Abstract
Many properties of the atomic nucleus, such as vibrations, rotations and incompressibility, can be interpreted as due to a two component quantum liquid of protons and neutrons. Electron scattering measurements on stable nuclei demonstrate that their central densities are saturated, as for liquid drops. In exotic nuclei near the limits of mass and charge, with large imbalances in their proton and neutron numbers, the possibility of a depleted central density, or a 'bubble' structure, has been discussed in a recurrent manner since the 1970s. Here we report first experimental evidence that points to a depletion of the central density of protons in the short-lived nucleus 34Si. The proton-to-neutron density asymmetry in 34Si offers the possibility to place constraints on the density and isospin dependence of the spin--orbit force-on which nuclear models have disagreed for decades-and on its stabilizing effect towards limits of nuclear existence., Comment: 6 pages, 3 figures
- Published
- 2017
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- View/download PDF
19. Use of Bayesian Optimization to understand the structure of nuclei
- Author
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Hooker, J., Kovoor, J., Jones, K.L., Kanungo, R., Alcorta, M., Allen, J., Andreoiu, C., Atar, L., Bardayan, D.W., Bhattacharjee, S.S., Blankstein, D., Burbadge, C., Burcher, S., Catford, W.N., Cha, S., Chae, K., Connolly, D., Davids, B., Esker, N., Garcia, F.H., Gillespie, S., Ghimire, R., Gula, A., Hackman, G., Hallam, S., Hellmich, M., Henderson, J., Holl, M., Jassal, P., King, S., Knight, T., Kruecken, R., Lepailleur, A., Liang, J., Morrison, L., O’Malley, P.D., Pain, S.D., Pereira-Lopez, X., Psaltis, A., Radich, A., Shotter, A.C., Vostinar, M., Williams, M., and Workman, O.
- Published
- 2022
- Full Text
- View/download PDF
20. Deciphering a Pharmacophore Network: A Case Study Using BCR-ABL Data.
- Author
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Damien Geslin, Alban Lepailleur, Jean-Luc Manguin, Nhat-Vinh Vo, Jean Luc Lamotte, Bertrand Cuissart, and Ronan Bureau
- Published
- 2022
- Full Text
- View/download PDF
21. Prospects for Surrogate Neutron Capture Measurements with Radioactive Ion Beams and GODDESS
- Author
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Cizewski, Jolie A., Ratkiewicz, Andrew, Lepailleur, Alexandre, Pain, Steven D., Garland, Heather, Sims, Harrison, Walter, David, Escher, Jutta, editor, Alhassid, Yoram, editor, Bernstein, Lee A., editor, Brown, David, editor, Fröhlich, Carla, editor, Talou, Patrick, editor, and Younes, Walid, editor
- Published
- 2021
- Full Text
- View/download PDF
22. Spectroscopy of $^{35}$P using the one-proton knockout reaction
- Author
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Mutschler, A., Sorlin, O., Lemasson, A., Bazin, D., Borcea, C., Borcea, R., Gade, A., Iwasaki, H., Khan, E., Lepailleur, A., Recchia, F., Roger, T., Rotaru, F., Stanoiu, M., Stroberg, R., Tostevin, J. A., Vandebrouck, M., Weisshaar, D., and Wimmer, K.
- Subjects
Nuclear Experiment - Abstract
The structure of $^{35}$P was studied with a one-proton knockout reaction at88~MeV/u from a $^{36}$S projectile beam at NSCL. The $\gamma$ rays from thedepopulation of excited states in $^{35}$P were detected with GRETINA, whilethe $^{35}$P nuclei were identified event-by-event in the focal plane of theS800 spectrograph. The level scheme of $^{35}$P was deduced up to 7.5 MeV using$\gamma-\gamma$ coincidences. The observed levels were attributed to protonremovals from the $sd$-shell and also from the deeply-bound $p\_{1/2}$ orbital.The orbital angular momentum of each state was derived from the comparisonbetween experimental and calculated shapes of individual ($\gamma$-gated)parallel momentum distributions. Despite the use of different reactions andtheir associate models, spectroscopic factors, $C^2S$, derived from the$^{36}$S $(-1p)$ knockout reaction agree with those obtained earlier from$^{36}$S($d$,\nuc{3}{He}) transfer, if a reduction factor $R\_s$, as deducedfrom inclusive one-nucleon removal cross sections, is applied to the knockout transitions.In addition to the expected proton-hole configurations, other states were observedwith individual cross sections of the order of 0.5~mb. Based on their shiftedparallel momentum distributions, their decay modes to negative parity states,their high excitation energy (around 4.7~MeV) and the fact that they were notobserved in the ($d$,\nuc{3}{He}) reaction, we propose that they may resultfrom a two-step mechanism or a nucleon-exchange reaction with subsequent neutronevaporation. Regardless of the mechanism, that could not yet be clarified, thesestates likely correspond to neutron core excitations in \nuc{35}{P}. Thisnewly-identified pathway, although weak, offers the possibility to selectivelypopulate certain intruder configurations that are otherwise hard to produceand identify., Comment: 5 figures, 1 table, accepted for publication in Physical Review C
- Published
- 2016
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- View/download PDF
23. Spectroscopy of $^{28}$Na: shell evolution toward the drip line
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Lepailleur, A., Wimmer, K., Mutschler, A., Sorlin, O., Bader, V., Bancroft, C., Barofsky, D., Bastin, B., Baugher, T., Bazin, D., Bildstein, V., Borcea, C., Borcea, R., Brown, B. A., Caceres, L., Gade, A., Gaudefroy, L., Grévy, S., Grinyer, G. F., Iwasaki, H., Khan, E., Kröll, T., Langer, C., Lemasson, A., Llidoo, O., Lloyd, J., Negoita, F., Santos, F. de Oliveira, Perdikakis, G., Recchia, F., Redpath, T., Roger, T., Rotaru, F., Saenz, S., Saint-Laurent, M. -G., Smalley, D., Sohler, D., Stanoiu, M., Stroberg, S. R., Thomas, J. C., Vandebrouck, M., Weisshaar, D., and Westerberg, A.
- Subjects
Nuclear Experiment - Abstract
Excited states in $^{28}$Na have been studied using the $\beta$-decay of implanted $^{28}$Ne ions at GANIL/LISE as well as the in-beam $\gamma$-ray spectroscopy at the NSCL/S800 facility. New states of positive (J$^{\pi}$=3,4$^+$) and negative (J$^{\pi}$=1-5$^-$) parity are proposed. The former arise from the coupling between 0d$\_{5/2}$ protons and a 0d$\_{3/2}$ neutron, while the latter are due to couplings with 1p$\_{3/2}$ or 0f$\_{7/2}$ neutrons. While the relative energies between the J$^{\pi}$=1-4$^+$ states are well reproduced with the USDA interaction in the N=17 isotones, a progressive shift in the ground state binding energy (by about 500 keV) is observed between $^{26}$F and $^{30}$Al. This points to a possible change in the proton-neutron 0d$\_{5/2}$-0d$\_{3/2}$ effective interaction when moving from stability to the drip line. The presence of J$^{\pi}$=1-4$^-$ negative parity states around 1.5 MeV as well as of a candidate for a J$^{\pi}$=5$^-$ state around 2.5 MeV give further support to the collapse of the N=20 gap and to the inversion between the 0f$\_{7/2}$ and 1p$\_{3/2}$ levels below Z=12. These features are discussed in the framework of Shell Model and EDF calculations, leading to predicted negative parity states in the low energy spectra of the $^{26}$F and $^{25}$O nuclei., Comment: Exp\'erience GANIL/LISE et NSCL/S800
- Published
- 2015
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- View/download PDF
24. Navigating pharmacophore space to identify activity discontinuities: A case study with BCR‐ABL.
- Author
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Lejmi, Maroua, Geslin, Damien, Bureau, Ronan, Cuissart, Bertrand, Ben Slima, Ilef, Meddouri, Nida, Borgi, Amel, Lamotte, Jean‐Luc, and Lepailleur, Alban
- Subjects
MOLECULAR structure ,PHARMACOPHORE ,PROTEIN-tyrosine kinases ,STRUCTURE-activity relationships ,CLASSROOM activities - Abstract
The exploration of chemical space is a fundamental aspect of chemoinformatics, particularly when one explores a large compound data set to relate chemical structures with molecular properties. In this study, we extend our previous work on chemical space visualization at the pharmacophoric level. Instead of using conventional binary classification of affinity (active vs inactive), we introduce a refined approach that categorizes compounds into four distinct classes based on their activity levels: super active, very active, active, and inactive. This classification enriches the color scheme applied to pharmacophore space, where the color representation of a pharmacophore hypothesis is driven by the associated compounds. Using the BCR‐ABL tyrosine kinase as a case study, we identified intriguing regions corresponding to pharmacophore activity discontinuities, providing valuable insights for structure‐activity relationships analysis. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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- View/download PDF
25. hERG toxicity assessment: Useful guidelines for drug design
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Garrido, Amanda, Lepailleur, Alban, Mignani, Serge M., Dallemagne, Patrick, and Rochais, Christophe
- Published
- 2020
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- View/download PDF
26. Nuclear structure studies of $^{24}$F
- Author
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Caceres, L., Lepailleur, A., Sorlin, O., Stanoiu, M., Sohler, D., Dombradi, Zs., Bogner, S. K., Brown, B. A., Hergert, H., Holt, J. D., Schwenk, A., Azaiez, F., Bastin, B., Borcea, C., Borcea, R., Bourgeois, C., Elekes, Z., Fülöp, Zs., Grévy, S., Gaudefroy, L., Grinyer, G. F., Guillemaud-Mueller, D., Ibrahim, F., Kerek, A., Krasznahorkay, A., Lewitowicz, M., Lukyanov, S. M., Mrazek, J., Negoita, F., De Oliveira, F., Penionzhkevich, Yu. -E., Podolyak, Zs., Porquet, M. G., Rotaru, F., Roussel-Chomaz, P., Saint-Laurent, M. G., Savajols, H., Sletten, G., Thomas, J. C., Timar, J., Timis, C., and Vajta, Zs.
- Subjects
Nuclear Experiment ,Nuclear Theory - Abstract
The structure of the $^{24}$F nucleus has been studied at GANIL using the $\beta$ decay of $^{24}$O and the in-beam $\gamma$-ray spectroscopy from the fragmentation of projectile nuclei. Combining these complementary experimental techniques, the level scheme of $^{24}$F has been constructed up to 3.6 Mev by means of particle-$\gamma$ and particle-$\gamma\gamma$ coincidence relations. Experimental results are compared to shell-model calculations using the standard USDA and USDB interactions as well as ab-initio valence-space Hamiltonians calculated from the in-medium similarity renormalization group based on chiral two- and three-nucleon forces. Both methods reproduce the measured level spacings well, and this close agreement allows unidentified spins and parities to be consistently assigned., Comment: 5 figures, 2 tables
- Published
- 2015
27. Experimental study of the two-body spin-orbit force
- Author
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Burgunder, G., Sorlin, O., Nowacki, F., Giron, S., Hammache, F., Moukaddam, M., eville, N. De S er, Beaumel, D., aceres, L. C, ément, E. Cl, Duchêne, G., Ebran, J. P., Fernandez-Dominguez, B., Flavigny, F., Franchoo, S., Gibelin, J., Gillibert, A., évy, S. Gr, Guillot, J., Lapoux, V., Lepailleur, A., Matea, I., Matta, A., Nalpas, L., Obertelli, A., Otsuka, T., Pancin, J., Poves, A., Raabe, R., Scarpaci, J. A., Stefan, I., Stodel, C., Suzuki, T., and Thomas, J. C.
- Subjects
Nuclear Experiment - Abstract
Energies and spectroscopic factors of the first $7/2^-$, $3/2^-$, $1/2^-$ and $5/2^-$ states in the $^{35}$Si$_{21}$ nucleus were determined by means of the (d,p) transfer reaction in inverse kinematics at GANIL using the MUST2 and EXOGAM detectors. By comparing the spectroscopic information on the $^{35}$Si and $^{37}$S isotones, a reduction of the $p_{3/2} - p_{1/2}$ spin-orbit splitting by about 25% is proposed, while the $f_{7/2} -f_{5/2}$ spin-orbit splitting seems to remain constant. These features, derived after having unfolded nuclear correlations using shell model calculations, have been attributed to the properties of the 2-body spin-orbit interaction, the amplitude of which is derived for the first time in an atomic nucleus. The present results, remarkably well reproduced by using several realistic nucleon-nucleon forces, provide a unique touchstone for the modeling of the spin-orbit interaction in atomic nuclei., Comment: 5 pages, 3 figures, accepted for publication in Physical Review Letters
- Published
- 2014
- Full Text
- View/download PDF
28. Spectroscopy of $^{26}$F to probe proton-neutron forces close to the drip line
- Author
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Lepailleur, A., Sorlin, O., Caceres, L., Bastin, B., Borcea, C., Borcea, R., Brown, B. A., Gaudefroy, L., évy, S. Gr, Grinyer, G. F., Hagen, G., Hjorth-Jensen, M., Jansen, G. R., Llidoo, O., Negoita, F., de Oliveira, F., Porquet, M. -G., Rotaru, F., Saint-Laurent, M. -G., Sohler, D., Stanoiu, M., and Thomas, J. C.
- Subjects
Nuclear Experiment - Abstract
A long-lived $J^{\pi}=4_1^+$ isomer, $T_{1/2}=2.2(1)$ms, has been discovered at 643.4(1) keV in the weakly-bound $^{26}_{9}$F nucleus. It was populated at GANIL in the fragmentation of a $^{36}$S beam. It decays by an internal transition to the $J^{\pi}=1_1^+$ ground state (82(14)%), by $\beta$-decay to $^{26}$Ne, or beta-delayed neutron emission to $^{25}$Ne. From the beta-decay studies of the $J^{\pi}=1_1^+$ and $J^{\pi}=4_1^+$ states, new excited states have been discovered in $^{25,26}$Ne. Gathering the measured binding energies of the $J^{\pi}=1_1^+-4_1^+$ multiplet in $^{26}_{9}$F, we find that the proton-neutron $\pi 0d_{5/2} \nu 0d_{3/2}$ effective force used in shell-model calculations should be reduced to properly account for the weak binding of $^{26}_{9}$F. Microscopic coupled cluster theory calculations using interactions derived from chiral effective field theory are in very good agreement with the energy of the low-lying $1_1^+,2_1^+,4_1^+$ states in $^{26}$F. Including three-body forces and coupling to the continuum effects improve the agreement between experiment and theory as compared to the use of two-body forces only., Comment: 5 pages, 3 figures, accepted for publication in Physical Review Letters
- Published
- 2013
- Full Text
- View/download PDF
29. Structure-activity relationships of serotonin 5-HT7 receptors ligands: A review
- Author
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Thirumaran, Sangeetha-Laura, Lepailleur, Alban, and Rochais, Christophe
- Published
- 2019
- Full Text
- View/download PDF
30. Search for Superscreening effect in Superconductor
- Author
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Ujic, P., Santos, F. de Oliveira, Lewitowicz, M., Achouri, L., Assié, M., Bastin, B., Borcea, C., Borcea, R., Buta, A., Coc, A., De France, G., Kamalou, O., Kiener, J., Lepailleur, A., Meot, V., Pautrat, A., Laurent, M. G. Saint, Sorlin, O., Stanoiu, M., and Tatischef, V.
- Subjects
Nuclear Experiment - Abstract
The decay of $^{19}$O($\beta^-$) and $^{19}$Ne($\beta^+$) implanted in niobium in its superconducting and metallic phase was measured using purified radioactive beams produced by the SPIRAL/GANIL facility. Half-lives and branching ratios measured in the two phases are consistent within one-sigma error bar. This measurement casts strong doubts on the predicted strong electron screening in superconductor, the so-called superscreening. The measured difference in screening potential energy is 110(90) eV for $^{19}$Ne and 400(320) eV for $^{19}$O. Precise determinations of the half-lives were obtained for $^{19}$O: 26.476(9) s and $^{19}$Ne: 17.254(5) s., Comment: 4 pages, 3 figures, accepted for publication in Physical Review Letters
- Published
- 2012
- Full Text
- View/download PDF
31. Prospects for Surrogate Neutron Capture Measurements with Radioactive Ion Beams and GODDESS
- Author
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Cizewski, Jolie A., primary, Ratkiewicz, Andrew, additional, Lepailleur, Alexandre, additional, Pain, Steven D., additional, Garland, Heather, additional, Sims, Harrison, additional, and Walter, David, additional
- Published
- 2021
- Full Text
- View/download PDF
32. Structure studies of Be13 from the Be12(d,p) reaction in inverse kinematics on a solid deuteron target
- Author
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Kovoor, J., primary, Jones, K. L., additional, Hooker, J., additional, Vostinar, M., additional, Kanungo, R., additional, Pain, S. D., additional, Alcorta, M., additional, Allen, J., additional, Andreoiu, C., additional, Atar, L., additional, Bardayan, D. W., additional, Bhattacharjee, S. S., additional, Blankstein, D., additional, Burbadge, C., additional, Burcher, S., additional, Catford, W. N., additional, Cha, S., additional, Chae, K., additional, Connolly, D., additional, Davids, B., additional, Esker, N. E., additional, Garcia, F. H., additional, Gillespie, S., additional, Ghimire, R., additional, Gula, A., additional, Hackman, G., additional, Hallam, S., additional, Hellmich, M., additional, Henderson, J., additional, Holl, M., additional, Jassal, P., additional, King, S., additional, Knight, T., additional, Kruecken, R., additional, Lepailleur, A., additional, Liang, J., additional, Morrison, L., additional, O'Malley, P. D., additional, Pereira-Lopez, X., additional, Psaltis, A., additional, Radich, A., additional, Refsgaard, J., additional, Shotter, A. C., additional, Williams, M., additional, and Workman, O., additional
- Published
- 2023
- Full Text
- View/download PDF
33. Skypattern mining: From pattern condensed representations to dynamic constraint satisfaction problems
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Ugarte, Willy, Boizumault, Patrice, Crémilleux, Bruno, Lepailleur, Alban, Loudni, Samir, Plantevit, Marc, Raïssi, Chedy, and Soulet, Arnaud
- Published
- 2017
- Full Text
- View/download PDF
34. Direct Reaction Measurements Using GODDESS
- Author
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Pain, S.D., Ratkiewicz, A., Baugher, T., Febbraro, M., Lepailleur, A., Ayangeakaa, A.D., Allen, J., Anderson, J.T., Bardayan, D.W., Blackmon, J.C., Blanchard, R., Burcher, S., Carpenter, M.P., Cha, S.M., Chae, K.Y., Chipps, K.A., Cizewski, J.A., Engelhardt, A., Garland, H., Jones, K.L., Kozub, R.L., Lee, E.J., Hall, M.R., Hall, O., Hu, J., O’Malley, P.D., Marsh, I., Rasco, B.C., Santiago-Gonzales, D., Seweryniak, D., Shadrick, S., Sims, H., Smith, K., Smith, M.S., Tai, P.-L., Thompson, P., Thornsberry, C., Varner, R.L., Walter, D., Wilson, G.L., and Zhu, S.
- Published
- 2017
- Full Text
- View/download PDF
35. Mining (Soft-) Skypatterns Using Constraint Programming
- Author
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Ugarte, Willy, Boizumault, Patrice, Loudni, Samir, Crémilleux, Bruno, Lepailleur, Alban, Kacprzyk, Janusz, Series editor, Guillet, Fabrice, editor, Pinaud, Bruno, editor, Venturini, Gilles, editor, and Zighed, Djamel Abdelkader, editor
- Published
- 2016
- Full Text
- View/download PDF
36. Skypattern mining: From pattern condensed representations to dynamic constraint satisfaction problems.
- Author
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Willy Ugarte, Patrice Boizumault, Bruno Crémilleux, Alban Lepailleur, Samir Loudni, Marc Plantevit, Chedy Raïssi, and Arnaud Soulet
- Published
- 2017
- Full Text
- View/download PDF
37. Conformation and Dynamics of Human Urotensin II and Urotensin Related Peptide in Aqueous Solution.
- Author
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Elke Haensele, Nawel Mele, Marija Miljak, Christopher M. Read, David C. Whitley, Lee Banting, Carla Delépée, Jana Sopkova-de Oliveira Santos, Alban Lepailleur, Ronan Bureau, Jonathan W. Essex, and Timothy Clark
- Published
- 2017
- Full Text
- View/download PDF
38. Automated detection of toxicophores and prediction of mutagenicity using PMCSFG algorithm
- Author
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Schietgat, Leander, primary, Cuissart, Bertrand, additional, De Grave, Kurt, additional, Efthymiadis, Kyriakos, additional, Bureau, Ronan, additional, Crémilleux, Bruno, additional, Ramon, Jan, additional, and Lepailleur, Alban, additional
- Published
- 2023
- Full Text
- View/download PDF
39. Dynamic microfluidic single-cell screening identifies pheno-tuning compounds to potentiate tuberculosis therapy
- Author
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Maxime Mistretta, Mena Cimino, Pascal Campagne, Stevenn Volant, Etienne Kornobis, Olivier Hebert, Christophe Rochais, Patrick Dallemagne, Cédric Lecoutey, Camille Tisnerat, Alban Lepailleur, Yann Ayotte, Steven R. LaPlante, Nicolas Gangneux, Monika Záhorszká, Jana Korduláková, Sophie Vichier-Guerre, Frédéric Bonhomme, Laura Pokorny, Marvin Albert, Jean-Yves Tinevez, and Giulia Manina
- Abstract
Drug-recalcitrant infections are a leading global-health concern. Bacterial cells benefit from phenotypic variation, which can suggest effective anti-microbial strategies. However, probing phenotypic variation entails spatiotemporal analysis of individual cells that is technically challenging, and hard to integrate into drug discovery. To address this, we developed a flow-controlled multi-condition microfluidic platform suitable for imaging two-dimensional growth of bacterial cells, compressed inside separate microchambers by a soft hydro-pneumatic membrane. With this platform, we implemented a dynamic single-cell screening for compounds that induce a phenotypic change while decreasing cell-to-cell variation, aiming to undermine the bacterial population, making it more vulnerable to other drugs. We first applied this strategy to mycobacteria, as tuberculosis poses a major public-health threat. Our top hit impairsMycobacterium tuberculosisvia a peculiar mode of action and enhances other anti-tubercular drugs. This work proves that pheno-tuning compounds represent a successful approach to tackle pathogens that are increasingly difficult to treat.
- Published
- 2023
- Full Text
- View/download PDF
40. Mining (Soft-) Skypatterns Using Dynamic CSP.
- Author
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Willy Ugarte Rojas, Patrice Boizumault, Samir Loudni, Bruno Crémilleux, and Alban Lepailleur
- Published
- 2014
- Full Text
- View/download PDF
41. Mining (Soft-) Skypatterns Using Dynamic CSP
- Author
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Ugarte Rojas, Willy, Boizumault, Patrice, Loudni, Samir, Crémilleux, Bruno, Lepailleur, Alban, Hutchison, David, Editorial Board Member, Kanade, Takeo, Editorial Board Member, Kittler, Josef, Editorial Board Member, Gao, Wen, Editorial Board Member, Kleinberg, Jon M., Editorial Board Member, Kobsa, Alfred, Editorial Board Member, Mattern, Friedemann, Editorial Board Member, Mitchell, John C., Editorial Board Member, Naor, Moni, Editorial Board Member, Nierstrasz, Oscar, Editorial Board Member, Pandu Rangan, C., Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Terzopoulos, Demetri, Editorial Board Member, Tygar, Doug, Editorial Board Member, Weikum, Gerhard, Editorial Board Member, and Simonis, Helmut, editor
- Published
- 2014
- Full Text
- View/download PDF
42. Mining (Soft-) Skypatterns Using Constraint Programming.
- Author
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Willy Ugarte, Patrice Boizumault, Samir Loudni, Bruno Crémilleux, and Alban Lepailleur
- Published
- 2013
- Full Text
- View/download PDF
43. Découverte des soft-skypatterns avec une approche PPC.
- Author
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Willy Ugarte, Patrice Boizumault, Samir Loudni, Bruno Crémilleux, and Alban Lepailleur
- Published
- 2013
44. Evolution of single-particle strength in neutron-rich 71Cu
- Author
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P. Morfouace, S. Franchoo, K. Sieja, I. Matea, L. Nalpas, M. Niikura, A.M. Sánchez-Benítez, I. Stefan, M. Assié, F. Azaiez, D. Beaumel, S. Boissinot, C. Borcea, R. Borcea, G. Burgunder, L. Cáceres, N. De Séréville, Zs. Dombrádi, J. Elseviers, B. Fernández-Domínguez, A. Gillibert, S. Giron, S. Grévy, F. Hammache, O. Kamalou, V. Lapoux, L. Lefebvre, A. Lepailleur, C. Louchart, G. Marquinez-Duran, I. Martel, A. Matta, D. Mengoni, D.R. Napoli, F. Recchia, J.-A. Scarpaci, D. Sohler, O. Sorlin, M. Stanoiu, C. Stodel, J.-C. Thomas, and Zs. Vajta
- Subjects
Physics ,QC1-999 - Abstract
The strength functions of the πf5/2, πp3/2 and πf7/2 orbitals in neutron-rich 71Cu were obtained in a 72Zn(d,3He)71Cu proton pick-up reaction in inverse kinematics using a radioactive beam of 72Zn at 38 MeV/u. A dedicated set-up was developed to overcome the experimental challenges posed by the low cross section of the reaction and the low energy of the outgoing 3He particles. The excitation-energy spectrum was reconstructed and spectroscopic factors were obtained after analysis of the angular distributions with the finite-range Distorted-Wave Born Approximation (DWBA). The results show that unlike for the πf5/2 orbital and contrary to earlier interpretation, the πf7/2 single-particle strength distribution is not appreciably affected by the addition of neutrons beyond N=40.
- Published
- 2015
- Full Text
- View/download PDF
45. New Pharmacophore Fingerprints and Weight‐matrix Learning for Virtual Screening. Application to Bcr‐Abl Data
- Author
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Rehioui, Hajar, primary, Cuissart, Bertrand, additional, Ouali, Abdelkader, additional, Lepailleur, Alban, additional, Lamotte, Jean‐Luc, additional, Bureau, Ronan, additional, and Zimmermann, Albrecht, additional
- Published
- 2022
- Full Text
- View/download PDF
46. Acute toxicity of 8 antidepressants: What are their modes of action?
- Author
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Minguez, Laetitia, Farcy, Emilie, Ballandonne, Céline, Lepailleur, Alban, Serpentini, Antoine, Lebel, Jean-Marc, Bureau, Ronan, and Halm-Lemeille, Marie-Pierre
- Published
- 2014
- Full Text
- View/download PDF
47. Soft constraints for pattern mining.
- Author
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Willy Ugarte, Patrice Boizumault, Samir Loudni, Bruno Crémilleux, and Alban Lepailleur
- Published
- 2015
- Full Text
- View/download PDF
48. Discovering Structural Alerts for Mutagenicity Using Stable Emerging Molecular Patterns.
- Author
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Jean-Philippe Métivier, Alban Lepailleur, Aleksey Buzmakov 0002, Guillaume Poezevara, Bruno Crémilleux, Sergei O. Kuznetsov, Jérémie Le Goff, Amedeo Napoli, Ronan Bureau, and Bertrand Cuissart
- Published
- 2015
- Full Text
- View/download PDF
49. New Pharmacophore Fingerprints and Weight-matrix Learning for Virtual Screening. Application to Bcr-Abl Data
- Author
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Hajar Rehioui, Bertrand Cuissart, Abdelkader Ouali, Alban Lepailleur, Jean‐Luc Lamotte, Ronan Bureau, and Albrecht Zimmermann
- Subjects
Structural Biology ,Organic Chemistry ,Drug Discovery ,Molecular Medicine ,Computer Science Applications - Abstract
In this work, we propose to analyze the potential of a new type of pharmacophoric descriptors coupled to a novel feature transformation technique, called Weight-Matrix Learning (WML, based on a feed-forward neural network). The application concerns virtual screening on a tyrosine kinase named BCR-ABL. First, the compounds were described using three different families of descriptors: our new pharmacophoric descriptors, and two circular fingerprints, ECFP4 and FCFP4. Afterwards, each of these original molecular representations were transformed using either an unsupervised WML method or a supervised one. Finally, using these transformed representations, K-Means clustering algorithm was applied to automatically partition the molecules. Combining our pharmacophoric descriptors with supervised Weight-Matrix Learning (SWML
- Published
- 2022
50. Dual Histamine H3R/Serotonin 5-HT4R Ligands with Antiamnesic Properties: Pharmacophore-Based Virtual Screening and Polypharmacology.
- Author
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Alban Lepailleur, Thomas Freret, Stéphane Lemaître, Michel Boulouard, François Dauphin, Antoine Hinschberger, Fabienne Dulin, Aurélien Lesnard, Ronan Bureau, and Sylvain Rault
- Published
- 2014
- Full Text
- View/download PDF
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