23 results on '"Karlsson Linnér, R"'
Search Results
2. Cohort Profile: Genetic data in the German Socio-Economic Panel Innovation Sample (Gene-SOEP)
- Author
-
Koellinger, P., Okbay, A., Kweon, H., Schweinert, A., Karlsson Linnér, R., Goebel, J., Richter, D., Reiber, L., Zweck, B., Belsky, D., Biroli, P., Mata, R., Tucker-Drob, E., Harden, K., Wagner, G., https://orcid.org/0000-0002-5985-4073, Hertwig, R., and https://orcid.org/0000-0002-9908-9556
- Published
- 2021
3. Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction
- Author
-
Karlsson Linnér, R., Mallard, T.T., Barr, P.B., Sanchez-Roige, S., Madole, J.W., Driver, M.N., Pasman, J.A., Koellinger, P.D., Dick, D.M., Karlsson Linnér, R., Mallard, T.T., Barr, P.B., Sanchez-Roige, S., Madole, J.W., Driver, M.N., Pasman, J.A., Koellinger, P.D., and Dick, D.M.
- Abstract
Item does not contain fulltext, Behaviors and disorders related to self-regulation, such as substance use, antisocial behavior and attention-deficit/hyperactivity disorder, are collectively referred to as externalizing and have shared genetic liability. We applied a multivariate approach that leverages genetic correlations among externalizing traits for genome-wide association analyses. By pooling data from ~1.5 million people, our approach is statistically more powerful than single-trait analyses and identifies more than 500 genetic loci. The loci were enriched for genes expressed in the brain and related to nervous system development. A polygenic score constructed from our results predicts a range of behavioral and medical outcomes that were not part of genome-wide analyses, including traits that until now lacked well-performing polygenic scores, such as opioid use disorder, suicide, HIV infections, criminal convictions and unemployment. Our findings are consistent with the idea that persistent difficulties in self-regulation can be conceptualized as a neurodevelopmental trait with complex and far-reaching social and health correlates.
- Published
- 2021
4. Discovering the genetic architecture of the mind: (Epi-)genome-wide association studies on human psychology and behavior
- Author
-
Karlsson Linnér, R., Koellinger, Philipp, Posthuma, D, Amsterdam Neuroscience - Complex Trait Genetics, and Complex Trait Genetics
- Subjects
Behavior genetics ,Social-science genetics ,GWAS ,EWAS - Published
- 2019
5. Discovering the genetic architecture of the mind:(Epi-)genome-wide association studies on human psychology and behavior
- Author
-
Karlsson Linnér, R.
- Subjects
Behavior genetics ,Social-science genetics ,GWAS ,EWAS - Published
- 2019
6. Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences
- Author
-
Karlsson Linnér, R., Biroli, Pietro, Kong, E., Meddens, Fleur W., Wedow, R., Fontana, M.A., Hoen, P.A.C. 't, Galesloot, T.E., Leeuw, C.A. de, Kiemeney, B., Franke, B., Koellinger, P., Beauchamp, J.P., Karlsson Linnér, R., Biroli, Pietro, Kong, E., Meddens, Fleur W., Wedow, R., Fontana, M.A., Hoen, P.A.C. 't, Galesloot, T.E., Leeuw, C.A. de, Kiemeney, B., Franke, B., Koellinger, P., and Beauchamp, J.P.
- Abstract
Contains fulltext : 201141.pdf (publisher's version ) (Closed access)
- Published
- 2019
7. An epigenome-wide association study meta-analysis of educational attainment
- Author
-
Karlsson Linnér, R, Marioni, R E, Rietveld, C A, Simpkin, A J, Davies, N M, Watanabe, K, Armstrong, N J, Auro, K, Baumbach, C, Bonder, M J, Buchwald, J, Fiorito, G, Ismail, K, Iurato, S, Joensuu, A, Karell, P, Kasela, S, Lahti, J, McRae, A F, Mandaviya, P R, Seppälä, I, Wang, Y, Baglietto, L, Binder, E B, Harris, S E, Hodge, A M, Horvath, S, Hurme, M, Johannesson, M, Latvala, A, Mather, K A, Medland, S E, Metspalu, A, Milani, L, Milne, R L, Pattie, A, Pedersen, N L, Peters, A, Polidoro, S, Räikkönen, K, Severi, G, Starr, J M, Stolk, L, Waldenberger, M, Eriksson, J G, Esko, T, Franke, L, Gieger, C, Relton, C, Davey Smith, G, Groningen Institute for Gastro Intestinal Genetics and Immunology (3GI), Department of Health and Life Sciences, and Stem Cell Aging Leukemia and Lymphoma (SALL)
- Subjects
EPIGENETIC CLOCK ,AGE ,STRESS ,TISSUE ,MORTALITY ,PATTERNS ,SOCIOECONOMIC-STATUS ,MATERNAL SMOKING ,EXPOSURE ,DNA METHYLATION - Abstract
The epigenome is associated with biological factors, such as disease status, and environmental factors, such as smoking, alcohol consumption and body mass index. Although there is a widespread perception that environmental influences on the epigenome are pervasive and profound, there has been little evidence to date in humans with respect to environmental factors that are biologically distal. Here we provide evidence on the associations between epigenetic modifications-in our case, CpG methylation-and educational attainment (EA), a biologically distal environmental factor that is arguably among the most important life-shaping experiences for individuals. Specifically, we report the results of an epigenome-wide association study meta-analysis of EA based on data from 27 cohort studies with a total of 10 767 individuals. We find nine CpG probes significantly associated with EA. However, robustness analyses show that all nine probes have previously been found to be associated with smoking. Only two associations remain when we perform a sensitivity analysis in the subset of never-smokers, and these two probes are known to be strongly associated with maternal smoking during pregnancy, and thus their association with EA could be due to correlation between EA and maternal smoking. Moreover, the effect sizes of the associations with EA are far smaller than the known associations with the biologically proximal environmental factors alcohol consumption, body mass index, smoking and maternal smoking during pregnancy. Follow-up analyses that combine the effects of many probes also point to small methylation associations with EA that are highly correlated with the combined effects of smoking. If our findings regarding EA can be generalized to other biologically distal environmental factors, then they cast doubt on the hypothesis that such factors have large effects on the epigenome.Molecular Psychiatry advance online publication, 31 October 2017; doi:10.1038/mp.2017.210.
- Published
- 2017
- Full Text
- View/download PDF
8. An epigenome-wide association study meta-analysis of educational attainment
- Author
-
Karlsson Linnér, R., Marioni, R.E., Rietveld, C.A., Simpkin, A.J., Davies, N.M., Watanabe, K., Armstrong, N.J., Auro, K., Baumbach, C., Bonder, M.J., Buchwald, J., Fiorito, G., Ismail, K., Iurato, S., Joensuu, A., Karell, P., Kasela, S., Lahti, J., McRae, A.F., Mandaviya, P.R., Seppälä, I., Wang, Y., Baglietto, L., Binder, E.B., Harris, S.E., Hodge, A.M., Horvath, S., Hurme, M., Johannesson, M., Latvala, A., Mather, K.A., Medland, S.E., Metspalu, A., Milani, L., Milne, R.L., Pattie, A., Pedersen, N.L., Peters, A., Polidoro, S., Räikkönen, K., Severi, G., Starr, J.M., Stolk, L., Waldenberger, M., Eriksson, J.G., Esko, T., Franke, L., Gieger, C., Giles, G.G., Hägg, S., Jousilahti, P., Kaprio, J., Kähönen, M., Lehtimäki, T., Martin, N.G., van Meurs, J.B.C., Ollikainen, M., Perola, M., Posthuma, D., Raitakari, O.T., Sachdev, P.S., Taskesen, E., Uitterlinden, A.G., Vineis, P., Wijmenga, C., Wright, M.J., Relton, C., Davey Smith, G., Deary, I.J., Koellinger, P.D., Benjamin, D.J., Karlsson Linnér, R., Marioni, R.E., Rietveld, C.A., Simpkin, A.J., Davies, N.M., Watanabe, K., Armstrong, N.J., Auro, K., Baumbach, C., Bonder, M.J., Buchwald, J., Fiorito, G., Ismail, K., Iurato, S., Joensuu, A., Karell, P., Kasela, S., Lahti, J., McRae, A.F., Mandaviya, P.R., Seppälä, I., Wang, Y., Baglietto, L., Binder, E.B., Harris, S.E., Hodge, A.M., Horvath, S., Hurme, M., Johannesson, M., Latvala, A., Mather, K.A., Medland, S.E., Metspalu, A., Milani, L., Milne, R.L., Pattie, A., Pedersen, N.L., Peters, A., Polidoro, S., Räikkönen, K., Severi, G., Starr, J.M., Stolk, L., Waldenberger, M., Eriksson, J.G., Esko, T., Franke, L., Gieger, C., Giles, G.G., Hägg, S., Jousilahti, P., Kaprio, J., Kähönen, M., Lehtimäki, T., Martin, N.G., van Meurs, J.B.C., Ollikainen, M., Perola, M., Posthuma, D., Raitakari, O.T., Sachdev, P.S., Taskesen, E., Uitterlinden, A.G., Vineis, P., Wijmenga, C., Wright, M.J., Relton, C., Davey Smith, G., Deary, I.J., Koellinger, P.D., and Benjamin, D.J.
- Abstract
The epigenome is associated with biological factors, such as disease status, and environmental factors, such as smoking, alcohol consumption and body mass index. Although there is a widespread perception that environmental influences on the epigenome are pervasive and profound, there has been little evidence to date in humans with respect to environmental factors that are biologically distal. Here we provide evidence on the associations between epigenetic modifications—in our case, CpG methylation—and educational attainment (EA), a biologically distal environmental factor that is arguably among the most important life-shaping experiences for individuals. Specifically, we report the results of an epigenome-wide association study meta-analysis of EA based on data from 27 cohort studies with a total of 10 767 individuals. We find nine CpG probes significantly associated with EA. However, robustness analyses show that all nine probes have previously been found to be associated with smoking. Only two associations remain when we perform a sensitivity analysis in the subset of never-smokers, and these two probes are known to be strongly associated with maternal smoking during pregnancy, and thus their association with EA could be due to correlation between EA and maternal smoking. Moreover, the effect sizes of the associations with EA are far smaller than the known associations with the biologically proximal environmental factors alcohol consumption, body mass index, smoking and maternal smoking during pregnancy. Follow-up analyses that combine the effects of many probes also point to small methylation associations with EA that are highly correlated with the combined effects of smoking. If our findings regarding EA can be generalized to other biologically distal environmental factors, then they cast doubt on the hypothesis that such factors have large effects on the epigenome.
- Published
- 2017
9. An epigenome-wide association study meta-analysis of educational attainment
- Author
-
Karlsson Linnér, R. (R.), Marioni, R.E. (Riccardo), Rietveld, C.A. (Niels), Simpkin, A.J. (A. J.), Davies, N.M. (N. M.), Watanabe, K. (K.), Armstrong, N.J. (Nicola J.), Auro, K. (Kirsi), Baumbach, C. (Clemens), Bonder, M.J. (Marc), Buchwald, J. (J.), Fiorito, G. (G.), Ismail, K. (K.), Iurato, S. (S.), Joensuu, A. (Anni), Karell, P. (P.), Kasela, S. (Silva), Lahti, J. (Jari), McRae, A.F. (A. F.), Mandaviya, P.R. (Pooja), Seppälä, I. (Ilkka), Wang, Y. (Y.), Baglietto, L. (L.), Binder, E.B. (Elisabeth), Harris, S.E. (Sarah), Hodge, A.M. (A. M.), Horvath, S. (S.), Hurme, M. (M.), Johannesson, M. (Magnus), Latvala, A. (Antti), Mather, R., Medland, S.E. (Sarah), Metspalu, A. (A.), Milani, L. (Lili), Milne, R.L. (R. L.), Pattie, A. (Alison), Pedersen, N.L. (Nancy), Peters, A. (Annette), Polidoro, S. (Silvia), Räikkönen, K. (Katri), Severi, G. (Gianluca), Starr, J.M. (John), Stolk, L. (Lisette), Waldenberger, M. (M.), Hagen, K. (Knut), Esko, T. (Tõnu), Franke, L. (Lude), Gieger, C. (Christian), Giles, G.G. (G. G.), Hägg, S. (Sara), Jousilahti, P. (Pekka), Kaprio, J. (Jaakko), Kähönen, M. (Mika), Lehtimäki, T. (Terho), Martin, N.G. (N. G.), Meurs, J. (J.) van, Ollikainen, M. (M.), Perola, M. (M.), Posthuma, D. (Danielle), Raitakari, O.T. (O. T.), Sachdev, P.S. (Perminder), Taskesen, E. (Erdogan), Uitterlinden, A.G. (André), Vineis, P. (Paolo), Wijmenga, C. (Ciska), Wright, M.J. (M. J.), Relton, C.L. (Caroline), Davey Smith, G. (G.), Deary, I.J. (Ian), Koellinger, P.D. (P. D.), Benjamin, D.J. (D. J.), Karlsson Linnér, R. (R.), Marioni, R.E. (Riccardo), Rietveld, C.A. (Niels), Simpkin, A.J. (A. J.), Davies, N.M. (N. M.), Watanabe, K. (K.), Armstrong, N.J. (Nicola J.), Auro, K. (Kirsi), Baumbach, C. (Clemens), Bonder, M.J. (Marc), Buchwald, J. (J.), Fiorito, G. (G.), Ismail, K. (K.), Iurato, S. (S.), Joensuu, A. (Anni), Karell, P. (P.), Kasela, S. (Silva), Lahti, J. (Jari), McRae, A.F. (A. F.), Mandaviya, P.R. (Pooja), Seppälä, I. (Ilkka), Wang, Y. (Y.), Baglietto, L. (L.), Binder, E.B. (Elisabeth), Harris, S.E. (Sarah), Hodge, A.M. (A. M.), Horvath, S. (S.), Hurme, M. (M.), Johannesson, M. (Magnus), Latvala, A. (Antti), Mather, R., Medland, S.E. (Sarah), Metspalu, A. (A.), Milani, L. (Lili), Milne, R.L. (R. L.), Pattie, A. (Alison), Pedersen, N.L. (Nancy), Peters, A. (Annette), Polidoro, S. (Silvia), Räikkönen, K. (Katri), Severi, G. (Gianluca), Starr, J.M. (John), Stolk, L. (Lisette), Waldenberger, M. (M.), Hagen, K. (Knut), Esko, T. (Tõnu), Franke, L. (Lude), Gieger, C. (Christian), Giles, G.G. (G. G.), Hägg, S. (Sara), Jousilahti, P. (Pekka), Kaprio, J. (Jaakko), Kähönen, M. (Mika), Lehtimäki, T. (Terho), Martin, N.G. (N. G.), Meurs, J. (J.) van, Ollikainen, M. (M.), Perola, M. (M.), Posthuma, D. (Danielle), Raitakari, O.T. (O. T.), Sachdev, P.S. (Perminder), Taskesen, E. (Erdogan), Uitterlinden, A.G. (André), Vineis, P. (Paolo), Wijmenga, C. (Ciska), Wright, M.J. (M. J.), Relton, C.L. (Caroline), Davey Smith, G. (G.), Deary, I.J. (Ian), Koellinger, P.D. (P. D.), and Benjamin, D.J. (D. J.)
- Abstract
The epigenome is associated with biological factors, such as disease status, and environmental factors, such as smoking, alcohol consumption and body mass index. Although there is a widespread perception that environmental influences on the epigenome are pervasive and profound, there has been little evidence to date in humans with respect to environmental factors that are biologically distal. Here we provide evidence on the associations between epigenetic modifications - in our case, CpG methylation - and educational attainment (EA), a biologically distal environmental factor that is arguably among the most important life-shaping experiences for individuals. Specifically, we report the results of an epigenome-wide association study meta-analysis of EA based on data from 27 cohort studies with a total of 10 767 individuals. We find nine CpG probes significantly associated with EA. However, robustness analyses show that all nine probes have previously been found to be associated with smoking. Only two associations remain when we perform a sensitivity analysis in the subset of never-smokers, and these two probes are known to be strongly associated with maternal smoking during pregnancy, and thus their association with EA could be due to correlation between EA and maternal smoking. Moreover, the effect sizes of the associations with EA are far smaller than the known associations with the biologically proximal environmental factors alcohol consumption, body mass index, smoking and maternal smoking during pregnancy. Follow-up analyses that combine the effects of many probes also point to small methylation associations with EA that are highly correlated with the combined effects of smoking. If our findings regarding EA can be generalized to other biologically distal environmental factors, then they cast doubt on the hypothesis that such factors have large effects on the epigenome.
- Published
- 2017
- Full Text
- View/download PDF
10. The impact of common and rare genetic variants on bradyarrhythmia development.
- Author
-
Weng LC, Rämö JT, Jurgens SJ, Khurshid S, Chaffin M, Hall AW, Morrill VN, Wang X, Nauffal V, Sun YV, Beer D, Lee S, Nadkarni GN, Duong T, Wang B, Czuba T, Austin TR, Yoneda ZT, Friedman DJ, Clayton A, Hyman MC, Judy RL, Skanes AC, Orland KM, Treu TM, Oetjens MT, Alonso A, Soliman EZ, Lin H, Lunetta KL, van der Pals J, Issa TZ, Nafissi NA, May HT, Leong-Sit P, Roselli C, Choi SH, Khan HR, Knight S, Karlsson Linnér R, Bezzina CR, Ripatti S, Heckbert SR, Gaziano JM, Loos RJF, Psaty BM, Smith JG, Benjamin EJ, Arking DE, Rader DJ, Shah SH, Roden DM, Damrauer SM, Eckhardt LL, Roberts JD, Cutler MJ, Shoemaker MB, Haggerty CM, Cho K, Palotie A, Wilson PWF, Ellinor PT, and Lubitz SA
- Subjects
- Humans, Polymorphism, Single Nucleotide, Female, Sick Sinus Syndrome genetics, Cardiac Conduction System Disease genetics, Male, Phenotype, Pacemaker, Artificial, Bradycardia genetics, Genome-Wide Association Study, Genetic Predisposition to Disease, Genetic Variation
- Abstract
To broaden our understanding of bradyarrhythmias and conduction disease, we performed common variant genome-wide association analyses in up to 1.3 million individuals and rare variant burden testing in 460,000 individuals for sinus node dysfunction (SND), distal conduction disease (DCD) and pacemaker (PM) implantation. We identified 13, 31 and 21 common variant loci for SND, DCD and PM, respectively. Four well-known loci (SCN5A/SCN10A, CCDC141, TBX20 and CAMK2D) were shared for SND and DCD, while others were more specific for SND or DCD. SND and DCD showed a moderate genetic correlation (r
g = 0.63). Cardiomyocyte-expressed genes were enriched for contributions to DCD heritability. Rare-variant analyses implicated LMNA for all bradyarrhythmia phenotypes, SMAD6 and SCN5A for DCD and TTN, MYBPC3 and SCN5A for PM. These results show that variation in multiple genetic pathways (for example, ion channel function, cardiac developmental programs, sarcomeric structure and cellular homeostasis) appear critical to the development of bradyarrhythmias., Competing Interests: Competing interests: S.A.L. is employed by Novartis as of July 2022. S.A.L. received sponsored research support from Bristol Myers Squibb/Pfizer, Bayer AG, Boehringer Ingelheim, Fitbit, IBM, Medtronic and Premier and consulted for Bristol Myers Squibb/Pfizer, Bayer AG, Blackstone Life Sciences and Invitae. C.R. is a full-time employee at GSK as of July 2024. P.T.E. has received sponsored research support from Bayer AG, IBM Research, Bristol Myers Squibb, Pfizer and Novo Nordisk; he has also served on advisory boards or consulted for Bayer AG and MyoKardia. S.M.D. receives research support from RenalytixAI and Novo Nordisk, outside the scope of the current research. The FinnGen project is funded by two grants from Business Finland (HUS 4685/31/2016 and UH 4386/31/2016) and the following industry partners: AbbVie, AstraZeneca, Biogen, Bristol Myers Squibb (and Celgene and Celgene International II Sàrl), Genentech, Merck Sharp & Dohme, Pfizer, GlaxoSmithKline Intellectual Property Development, Sanofi US Services, Maze Therapeutics, Janssen Biotech, Novartis AG and Boehringer Ingelheim International GmbH. B.M.P. serves on the steering committee of the Yale Open Data Access Project funded by Johnson & Johnson. The remaining authors declare no competing interests., (© 2025. The Author(s).)- Published
- 2025
- Full Text
- View/download PDF
11. Author Correction: Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.
- Author
-
Karlsson Linnér R, Mallard TT, Barr PB, Sanchez-Roige S, Madole JW, Driver MN, Poore HE, de Vlaming R, Grotzinger AD, Tielbeek JJ, Johnson EC, Liu M, Rosenthal SB, Ideker T, Zhou H, Kember RL, Pasman JA, Verweij KJH, Liu DJ, Vrieze S, Kranzler HR, Gelernter J, Harris KM, Tucker-Drob EM, Waldman ID, Palmer AA, Harden KP, Koellinger PD, and Dick DM
- Published
- 2025
- Full Text
- View/download PDF
12. Meta-Analysis of Genome-Wide Association Studies Reveals Genetic Mechanisms of Supraventricular Arrhythmias.
- Author
-
Weng LC, Khurshid S, Hall AW, Nauffal V, Morrill VN, Sun YV, Rämö JT, Beer D, Lee S, Nadkarni G, Johnson R, Andreasen L, Clayton A, Pullinger CR, Yoneda ZT, Friedman DJ, Hyman MC, Judy RL, Skanes AC, Orland KM, Jordà P, Treu TM, Oetjens MT, Subbiah R, Hartmann JP, May HT, Kane JP, Issa TZ, Nafissi NA, Leong-Sit P, Dubé MP, Roselli C, Choi SH, Tardif JC, Khan HR, Knight S, Svendsen JH, Walker B, Karlsson Linnér R, Gaziano JM, Tadros R, Fatkin D, Rader DJ, Shah SH, Roden DM, Marcus GM, Loos RJF, Damrauer SM, Haggerty CM, Cho K, Palotie A, Olesen MS, Eckhardt LL, Roberts JD, Cutler MJ, Shoemaker MB, Wilson PWF, Ellinor PT, and Lubitz SA
- Subjects
- Humans, Genetic Predisposition to Disease, Tachycardia, Atrioventricular Nodal Reentry genetics, Polymorphism, Single Nucleotide, Connectin genetics, Transcriptome, Genome-Wide Association Study, Tachycardia, Supraventricular genetics
- Abstract
Background: Substantial data support a heritable basis for supraventricular tachycardias, but the genetic determinants and molecular mechanisms of these arrhythmias are poorly understood. We sought to identify genetic loci associated with atrioventricular nodal reentrant tachycardia (AVNRT) and atrioventricular accessory pathways or atrioventricular reciprocating tachycardia (AVAPs/AVRT)., Methods: We performed multiancestry meta-analyses of genome-wide association studies to identify genetic loci for AVNRT (4 studies) and AVAP/AVRT (7 studies). We assessed evidence supporting the potential causal effects of candidate genes by analyzing relations between associated variants and cardiac gene expression, performing transcriptome-wide analyses, and examining prior genome-wide association studies., Results: Analyses comprised 2384 AVNRT cases and 106 489 referents, and 2811 AVAP/AVRT cases and 1,483 093 referents. We identified 2 significant loci for AVNRT, which implicate NKX2-5 and TTN as disease susceptibility genes. A transcriptome-wide association analysis supported an association between reduced predicted cardiac expression of NKX2-5 and AVNRT. We identified 3 significant loci for AVAP/AVRT, which implicate SCN5A , SCN10A , and TTN/CCDC141 . Variant associations at several loci have been previously reported for cardiac phenotypes, including atrial fibrillation, stroke, Brugada syndrome, and electrocardiographic intervals., Conclusions: Our findings highlight gene regions associated with ion channel function (AVAP/AVRT), as well as cardiac development and the sarcomere (AVAP/AVRT and AVNRT) as important potential effectors of supraventricular tachycardia susceptibility., Competing Interests: Disclosures Dr Lubitz is a full-time employee of Novartis as of July 2022. Previously, Dr Lubitz received research support from Bristol Myers Squibb/Pfizer, Bayer AG, Boehringer Ingelheim, Fitbit, IBM, Medtronic, and Premier, Inc, and consulted for Bristol Myers Squibb/Pfizer, Bayer AG, Blackstone Life Sciences, and Invitae. Dr Ellinor receives research support from Bayer AG, IBM, and Bristol Myers Squibb/Pfizer and has consulted for Novartis, MyoKardia, and Bayer AG. Dr Damrauer receives research support for RenalytixAI and has consulted for Calico Labs. Dr Svendsen is a member of Medtronic advisory boards and has received speaker honoraria and research grants from Medtronic outside this work. Dr Cutler has consulted for Janssen Scientific. Dr Roselli is supported by a grant from Bayer AG to the Broad Institute focused on the development of therapeutics for cardiovascular disease. The other authors report no conflicts.
- Published
- 2024
- Full Text
- View/download PDF
13. Guidelines for Evaluating the Comparability of Down-Sampled GWAS Summary Statistics.
- Author
-
Williams CM, Poore H, Tanksley PT, Kweon H, Courchesne-Krak NS, Londono-Correa D, Mallard TT, Barr P, Koellinger PD, Waldman ID, Sanchez-Roige S, Harden KP, Palmer AA, Dick DM, and Karlsson Linnér R
- Subjects
- Phenotype, Genomics methods, Multifactorial Inheritance, Genome-Wide Association Study methods, Polymorphism, Single Nucleotide genetics
- Abstract
Proprietary genetic datasets are valuable for boosting the statistical power of genome-wide association studies (GWASs), but their use can restrict investigators from publicly sharing the resulting summary statistics. Although researchers can resort to sharing down-sampled versions that exclude restricted data, down-sampling reduces power and might change the genetic etiology of the phenotype being studied. These problems are further complicated when using multivariate GWAS methods, such as genomic structural equation modeling (Genomic SEM), that model genetic correlations across multiple traits. Here, we propose a systematic approach to assess the comparability of GWAS summary statistics that include versus exclude restricted data. Illustrating this approach with a multivariate GWAS of an externalizing factor, we assessed the impact of down-sampling on (1) the strength of the genetic signal in univariate GWASs, (2) the factor loadings and model fit in multivariate Genomic SEM, (3) the strength of the genetic signal at the factor level, (4) insights from gene-property analyses, (5) the pattern of genetic correlations with other traits, and (6) polygenic score analyses in independent samples. For the externalizing GWAS, although down-sampling resulted in a loss of genetic signal and fewer genome-wide significant loci; the factor loadings and model fit, gene-property analyses, genetic correlations, and polygenic score analyses were found robust. Given the importance of data sharing for the advancement of open science, we recommend that investigators who generate and share down-sampled summary statistics report these analyses as accompanying documentation to support other researchers' use of the summary statistics., (© 2023. The Author(s).)
- Published
- 2023
- Full Text
- View/download PDF
14. Genetic risk scores in life insurance underwriting.
- Author
-
Karlsson Linnér R and Koellinger PD
- Subjects
- Genetic Testing, Humans, Retirement, Risk Factors, Insurance, Insurance, Life
- Abstract
Genetic tests that predict the lifetime risk of common medical conditions are fast becoming more accurate and affordable. The life insurance industry is interested in using predictive genetic tests in the underwriting process, but more research is needed to establish whether this nascent form of genetic testing can refine the process over conventional underwriting factors. Here, we perform Cox regression of survival on a battery of genetic risk scores for common medical conditions and mortality risks in the Health and Retirement Study, without returning results to participants. Adjusted for covariates in a relevant insurance scenario, the scores could improve mortality risk classification by identifying 2.6 years shorter median lifespan in the highest decile of total genetic liability. We conclude that existing genetic risk scores can already improve life insurance underwriting, which stresses the urgency of policymakers to balance competing interests between stakeholders as this technology develops., (Copyright © 2021 The Author(s). Published by Elsevier B.V. All rights reserved.)
- Published
- 2022
- Full Text
- View/download PDF
15. Resource profile and user guide of the Polygenic Index Repository.
- Author
-
Becker J, Burik CAP, Goldman G, Wang N, Jayashankar H, Bennett M, Belsky DW, Karlsson Linnér R, Ahlskog R, Kleinman A, Hinds DA, Caspi A, Corcoran DL, Moffitt TE, Poulton R, Sugden K, Williams BS, Harris KM, Steptoe A, Ajnakina O, Milani L, Esko T, Iacono WG, McGue M, Magnusson PKE, Mallard TT, Harden KP, Tucker-Drob EM, Herd P, Freese J, Young A, Beauchamp JP, Koellinger PD, Oskarsson S, Johannesson M, Visscher PM, Meyer MN, Laibson D, Cesarini D, Benjamin DJ, Turley P, and Okbay A
- Subjects
- Data Analysis, Genome-Wide Association Study, Humans, Databases, Genetic, Multifactorial Inheritance, Polymorphism, Single Nucleotide
- Abstract
Polygenic indexes (PGIs) are DNA-based predictors. Their value for research in many scientific disciplines is growing rapidly. As a resource for researchers, we used a consistent methodology to construct PGIs for 47 phenotypes in 11 datasets. To maximize the PGIs' prediction accuracies, we constructed them using genome-wide association studies-some not previously published-from multiple data sources, including 23andMe and UK Biobank. We present a theoretical framework to help interpret analyses involving PGIs. A key insight is that a PGI can be understood as an unbiased but noisy measure of a latent variable we call the 'additive SNP factor'. Regressions in which the true regressor is this factor but the PGI is used as its proxy therefore suffer from errors-in-variables bias. We derive an estimator that corrects for the bias, illustrate the correction, and make a Python tool for implementing it publicly available., (© 2021. The Author(s), under exclusive licence to Springer Nature Limited.)
- Published
- 2021
- Full Text
- View/download PDF
16. Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction.
- Author
-
Karlsson Linnér R, Mallard TT, Barr PB, Sanchez-Roige S, Madole JW, Driver MN, Poore HE, de Vlaming R, Grotzinger AD, Tielbeek JJ, Johnson EC, Liu M, Rosenthal SB, Ideker T, Zhou H, Kember RL, Pasman JA, Verweij KJH, Liu DJ, Vrieze S, Kranzler HR, Gelernter J, Harris KM, Tucker-Drob EM, Waldman ID, Palmer AA, Harden KP, Koellinger PD, and Dick DM
- Subjects
- Attention Deficit Disorder with Hyperactivity genetics, Behavior, Addictive psychology, Behavioral Symptoms genetics, Behavioral Symptoms psychology, Computational Biology, Crime psychology, Genome-Wide Association Study, HIV Infections genetics, HIV Infections psychology, Humans, Meta-Analysis as Topic, Multifactorial Inheritance, Multivariate Analysis, Opioid-Related Disorders genetics, Opioid-Related Disorders psychology, Reproducibility of Results, Suicide, Unemployment, Behavior, Addictive genetics, Genetic Association Studies, Self-Control
- Abstract
Behaviors and disorders related to self-regulation, such as substance use, antisocial behavior and attention-deficit/hyperactivity disorder, are collectively referred to as externalizing and have shared genetic liability. We applied a multivariate approach that leverages genetic correlations among externalizing traits for genome-wide association analyses. By pooling data from ~1.5 million people, our approach is statistically more powerful than single-trait analyses and identifies more than 500 genetic loci. The loci were enriched for genes expressed in the brain and related to nervous system development. A polygenic score constructed from our results predicts a range of behavioral and medical outcomes that were not part of genome-wide analyses, including traits that until now lacked well-performing polygenic scores, such as opioid use disorder, suicide, HIV infections, criminal convictions and unemployment. Our findings are consistent with the idea that persistent difficulties in self-regulation can be conceptualized as a neurodevelopmental trait with complex and far-reaching social and health correlates., (© 2021. The Author(s), under exclusive licence to Springer Nature America, Inc.)
- Published
- 2021
- Full Text
- View/download PDF
17. Genetic underpinnings of risky behaviour relate to altered neuroanatomy.
- Author
-
Aydogan G, Daviet R, Karlsson Linnér R, Hare TA, Kable JW, Kranzler HR, Wetherill RR, Ruff CC, Koellinger PD, and Nave G
- Subjects
- Adult, Aged, Amygdala diagnostic imaging, Amygdala pathology, Female, Genome-Wide Association Study, Gray Matter pathology, Humans, Hypothalamus diagnostic imaging, Hypothalamus pathology, Male, Middle Aged, Multifactorial Inheritance, Prefrontal Cortex diagnostic imaging, Prefrontal Cortex pathology, Putamen diagnostic imaging, Putamen pathology, United Kingdom, Ventral Striatum diagnostic imaging, Ventral Striatum pathology, Alcohol Drinking, Automobile Driving, Gray Matter diagnostic imaging, Organ Size genetics, Risk-Taking, Sexual Behavior, Smoking
- Abstract
Previous research points to the heritability of risk-taking behaviour. However, evidence on how genetic dispositions are translated into risky behaviour is scarce. Here, we report a genetically informed neuroimaging study of real-world risky behaviour across the domains of drinking, smoking, driving and sexual behaviour in a European sample from the UK Biobank (N = 12,675). We find negative associations between risky behaviour and grey-matter volume in distinct brain regions, including amygdala, ventral striatum, hypothalamus and dorsolateral prefrontal cortex (dlPFC). These effects are replicated in an independent sample recruited from the same population (N = 13,004). Polygenic risk scores for risky behaviour, derived from a genome-wide association study in an independent sample (N = 297,025), are inversely associated with grey-matter volume in dlPFC, putamen and hypothalamus. This relation mediates roughly 2.2% of the association between genes and behaviour. Our results highlight distinct heritable neuroanatomical features as manifestations of the genetic propensity for risk taking.
- Published
- 2021
- Full Text
- View/download PDF
18. Penetrance and Pleiotropy of Polygenic Risk Scores for Schizophrenia in 106,160 Patients Across Four Health Care Systems.
- Author
-
Zheutlin AB, Dennis J, Karlsson Linnér R, Moscati A, Restrepo N, Straub P, Ruderfer D, Castro VM, Chen CY, Ge T, Huckins LM, Charney A, Kirchner HL, Stahl EA, Chabris CF, Davis LK, and Smoller JW
- Subjects
- Female, Humans, Male, Middle Aged, Delivery of Health Care statistics & numerical data, Genetic Pleiotropy genetics, Penetrance, Risk Factors, Genetic Predisposition to Disease genetics, Multifactorial Inheritance genetics, Schizophrenia genetics
- Abstract
Objective: Individuals at high risk for schizophrenia may benefit from early intervention, but few validated risk predictors are available. Genetic profiling is one approach to risk stratification that has been extensively validated in research cohorts. The authors sought to test the utility of this approach in clinical settings and to evaluate the broader health consequences of high genetic risk for schizophrenia., Methods: The authors used electronic health records for 106,160 patients from four health care systems to evaluate the penetrance and pleiotropy of genetic risk for schizophrenia. Polygenic risk scores (PRSs) for schizophrenia were calculated from summary statistics and tested for association with 1,359 disease categories, including schizophrenia and psychosis, in phenome-wide association studies. Effects were combined through meta-analysis across sites., Results: PRSs were robustly associated with schizophrenia (odds ratio per standard deviation increase in PRS, 1.55; 95% CI=1.4, 1.7), and patients in the highest risk decile of the PRS distribution had up to 4.6-fold higher odds of schizophrenia compared with those in the bottom decile (95% CI=2.9, 7.3). PRSs were also positively associated with other phenotypes, including anxiety, mood, substance use, neurological, and personality disorders, as well as suicidal behavior, memory loss, and urinary syndromes; they were inversely related to obesity., Conclusions: The study demonstrates that an available measure of genetic risk for schizophrenia is robustly associated with schizophrenia in health care settings and has pleiotropic effects on related psychiatric disorders as well as other medical syndromes. The results provide an initial indication of the opportunities and limitations that may arise with the future application of PRS testing in health care systems.
- Published
- 2019
- Full Text
- View/download PDF
19. Genome-wide association analyses of risk tolerance and risky behaviors in over 1 million individuals identify hundreds of loci and shared genetic influences.
- Author
-
Karlsson Linnér R, Biroli P, Kong E, Meddens SFW, Wedow R, Fontana MA, Lebreton M, Tino SP, Abdellaoui A, Hammerschlag AR, Nivard MG, Okbay A, Rietveld CA, Timshel PN, Trzaskowski M, Vlaming R, Zünd CL, Bao Y, Buzdugan L, Caplin AH, Chen CY, Eibich P, Fontanillas P, Gonzalez JR, Joshi PK, Karhunen V, Kleinman A, Levin RZ, Lill CM, Meddens GA, Muntané G, Sanchez-Roige S, Rooij FJV, Taskesen E, Wu Y, Zhang F, Auton A, Boardman JD, Clark DW, Conlin A, Dolan CC, Fischbacher U, Groenen PJF, Harris KM, Hasler G, Hofman A, Ikram MA, Jain S, Karlsson R, Kessler RC, Kooyman M, MacKillop J, Männikkö M, Morcillo-Suarez C, McQueen MB, Schmidt KM, Smart MC, Sutter M, Thurik AR, Uitterlinden AG, White J, Wit H, Yang J, Bertram L, Boomsma DI, Esko T, Fehr E, Hinds DA, Johannesson M, Kumari M, Laibson D, Magnusson PKE, Meyer MN, Navarro A, Palmer AA, Pers TH, Posthuma D, Schunk D, Stein MB, Svento R, Tiemeier H, Timmers PRHJ, Turley P, Ursano RJ, Wagner GG, Wilson JF, Gratten J, Lee JJ, Cesarini D, Benjamin DJ, Koellinger PD, and Beauchamp JP
- Subjects
- Case-Control Studies, Female, Genetics, Behavioral methods, Genome-Wide Association Study methods, Genotype, Humans, Male, Polymorphism, Single Nucleotide genetics, Behavior physiology, Genetic Loci genetics, Genetic Predisposition to Disease genetics
- Abstract
Humans vary substantially in their willingness to take risks. In a combined sample of over 1 million individuals, we conducted genome-wide association studies (GWAS) of general risk tolerance, adventurousness, and risky behaviors in the driving, drinking, smoking, and sexual domains. Across all GWAS, we identified hundreds of associated loci, including 99 loci associated with general risk tolerance. We report evidence of substantial shared genetic influences across risk tolerance and the risky behaviors: 46 of the 99 general risk tolerance loci contain a lead SNP for at least one of our other GWAS, and general risk tolerance is genetically correlated ([Formula: see text] ~ 0.25 to 0.50) with a range of risky behaviors. Bioinformatics analyses imply that genes near SNPs associated with general risk tolerance are highly expressed in brain tissues and point to a role for glutamatergic and GABAergic neurotransmission. We found no evidence of enrichment for genes previously hypothesized to relate to risk tolerance.
- Published
- 2019
- Full Text
- View/download PDF
20. Are Bigger Brains Smarter? Evidence From a Large-Scale Preregistered Study.
- Author
-
Nave G, Jung WH, Karlsson Linnér R, Kable JW, and Koellinger PD
- Subjects
- Adult, Aged, Brain diagnostic imaging, Female, Gray Matter anatomy & histology, Gray Matter diagnostic imaging, Humans, Magnetic Resonance Imaging, Male, Middle Aged, White Matter anatomy & histology, White Matter diagnostic imaging, Brain anatomy & histology, Educational Status, Intelligence physiology
- Abstract
A positive relationship between brain volume and intelligence has been suspected since the 19th century, and empirical studies seem to support this hypothesis. However, this claim is controversial because of concerns about publication bias and the lack of systematic control for critical confounding factors (e.g., height, population structure). We conducted a preregistered study of the relationship between brain volume and cognitive performance using a new sample of adults from the United Kingdom that is about 70% larger than the combined samples of all previous investigations on this subject ( N = 13,608). Our analyses systematically controlled for sex, age, height, socioeconomic status, and population structure, and our analyses were free of publication bias. We found a robust association between total brain volume and fluid intelligence ( r = .19), which is consistent with previous findings in the literature after controlling for measurement quality of intelligence in our data. We also found a positive relationship between total brain volume and educational attainment ( r = .12). These relationships were mainly driven by gray matter (rather than white matter or fluid volume), and effect sizes were similar for both sexes and across age groups.
- Published
- 2019
- Full Text
- View/download PDF
21. Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.
- Author
-
Lee JJ, Wedow R, Okbay A, Kong E, Maghzian O, Zacher M, Nguyen-Viet TA, Bowers P, Sidorenko J, Karlsson Linnér R, Fontana MA, Kundu T, Lee C, Li H, Li R, Royer R, Timshel PN, Walters RK, Willoughby EA, Yengo L, Alver M, Bao Y, Clark DW, Day FR, Furlotte NA, Joshi PK, Kemper KE, Kleinman A, Langenberg C, Mägi R, Trampush JW, Verma SS, Wu Y, Lam M, Zhao JH, Zheng Z, Boardman JD, Campbell H, Freese J, Harris KM, Hayward C, Herd P, Kumari M, Lencz T, Luan J, Malhotra AK, Metspalu A, Milani L, Ong KK, Perry JRB, Porteous DJ, Ritchie MD, Smart MC, Smith BH, Tung JY, Wareham NJ, Wilson JF, Beauchamp JP, Conley DC, Esko T, Lehrer SF, Magnusson PKE, Oskarsson S, Pers TH, Robinson MR, Thom K, Watson C, Chabris CF, Meyer MN, Laibson DI, Yang J, Johannesson M, Koellinger PD, Turley P, Visscher PM, Benjamin DJ, and Cesarini D
- Subjects
- Adult, Aged, Aged, 80 and over, Cohort Studies, Educational Status, Female, Genome-Wide Association Study methods, Humans, Male, Middle Aged, Phenotype, Polymorphism, Single Nucleotide, Multifactorial Inheritance
- Abstract
Here we conducted a large-scale genetic association analysis of educational attainment in a sample of approximately 1.1 million individuals and identify 1,271 independent genome-wide-significant SNPs. For the SNPs taken together, we found evidence of heterogeneous effects across environments. The SNPs implicate genes involved in brain-development processes and neuron-to-neuron communication. In a separate analysis of the X chromosome, we identify 10 independent genome-wide-significant SNPs and estimate a SNP heritability of around 0.3% in both men and women, consistent with partial dosage compensation. A joint (multi-phenotype) analysis of educational attainment and three related cognitive phenotypes generates polygenic scores that explain 11-13% of the variance in educational attainment and 7-10% of the variance in cognitive performance. This prediction accuracy substantially increases the utility of polygenic scores as tools in research.
- Published
- 2018
- Full Text
- View/download PDF
22. Social adversity and epigenetic aging: a multi-cohort study on socioeconomic differences in peripheral blood DNA methylation.
- Author
-
Fiorito G, Polidoro S, Dugué PA, Kivimaki M, Ponzi E, Matullo G, Guarrera S, Assumma MB, Georgiadis P, Kyrtopoulos SA, Krogh V, Palli D, Panico S, Sacerdote C, Tumino R, Chadeau-Hyam M, Stringhini S, Severi G, Hodge AM, Giles GG, Marioni R, Karlsson Linnér R, O'Halloran AM, Kenny RA, Layte R, Baglietto L, Robinson O, McCrory C, Milne RL, and Vineis P
- Subjects
- Aged, Cohort Studies, Female, Humans, Male, Middle Aged, Socioeconomic Factors, Aging genetics, DNA Methylation genetics, Epigenesis, Genetic genetics
- Abstract
Low socioeconomic status (SES) is associated with earlier onset of age-related chronic conditions and reduced life-expectancy, but the underlying biomolecular mechanisms remain unclear. Evidence of DNA-methylation differences by SES suggests a possible association of SES with epigenetic age acceleration (AA). We investigated the association of SES with AA in more than 5,000 individuals belonging to three independent prospective cohorts from Italy, Australia, and Ireland. Low SES was associated with greater AA (β = 0.99 years; 95% CI 0.39,1.59; p = 0.002; comparing extreme categories). The results were consistent across different SES indicators. The associations were only partially modulated by the unhealthy lifestyle habits of individuals with lower SES. Individuals who experienced life-course SES improvement had intermediate AA compared to extreme SES categories, suggesting reversibility of the effect and supporting the relative importance of the early childhood social environment. Socioeconomic adversity is associated with accelerated epigenetic aging, implicating biomolecular mechanisms that may link SES to age-related diseases and longevity.
- Published
- 2017
- Full Text
- View/download PDF
23. Meta-analysis of the serotonin transporter promoter variant (5-HTTLPR) in relation to adverse environment and antisocial behavior.
- Author
-
Tielbeek JJ, Karlsson Linnér R, Beers K, Posthuma D, Popma A, and Polderman TJ
- Subjects
- Aggression psychology, Alleles, Environment, Female, Gene-Environment Interaction, Genotype, Humans, Male, Polymorphism, Genetic, Promoter Regions, Genetic, Risk Factors, Social Behavior, Aggression physiology, Antisocial Personality Disorder genetics, Serotonin Plasma Membrane Transport Proteins genetics
- Abstract
Several studies have suggested an association between antisocial, aggressive, and delinquent behavior and the short variant of the serotonin transporter gene polymorphism (5-HTTLPR). Yet, genome wide and candidate gene studies in humans have not convincingly shown an association between these behaviors and 5-HTTLPR. Moreover, individual studies examining the effect of 5-HTTLPR in the presence or absence of adverse environmental factors revealed inconsistent results. We therefore performed a meta-analysis to test for the robustness of the potential interaction effect of the "long-short" variant of the 5-HTTLPR genotype and environmental adversities, on antisocial behavior. Eight studies, comprising of 12 reasonably independent samples, totaling 7,680 subjects with an effective sample size of 6,724, were included in the meta-analysis. Although our extensive meta-analysis resulted in a significant interaction effect between the 5-HTTLPR genotype and environmental adversities on antisocial behavior, the methodological constraints of the included studies hampered a confident interpretation of our results, and firm conclusions regarding the direction of effect. Future studies that aim to examine biosocial mechanisms that influence the etiology of antisocial behavior should make use of larger samples, extend to genome-wide genetic risk scores and properly control for covariate interaction terms, ensuring valid and well-powered research designs. © 2016 Wiley Periodicals, Inc., (© 2016 Wiley Periodicals, Inc.)
- Published
- 2016
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.