90 results on '"Kalam, K."'
Search Results
2. Thermal effects on TiN/Ti/HfO2/Pt memristors charge conduction.
- Author
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Jiménez-Molinos, F., Vinuesa, G., García, H., Tarre, A., Tamm, A., Kalam, K., Kukli, K., Dueñas, S., Castán, H., González, M. B., Campabadal, F., and Roldán, J. B.
- Subjects
MEMRISTORS ,TITANIUM nitride ,CURRENT-voltage curves ,CURRENT-voltage characteristics ,VALENCE fluctuations - Abstract
TiN/Ti/HfO
2 /Pt resistive switching devices have been fabricated, measured, and modeled. After programming the devices in the low resistance state, the current–voltage characteristic below the reset switching voltage was measured at different temperatures (from 90 to 350 K). A weak but complex temperature dependence was obtained for several voltage regimes. These memristors belong to a wider set known as valence change memories, whose conductance is determined by the formation of conductive filaments (CFs) linked to a high density of oxygen vacancies in a dielectric sandwiched between two metal electrodes. This usually leads to ohmic conduction in the low resistance state. However, a non-linear current dependence has been also observed in the measured devices, in addition to symmetric current–voltage curves for positive and negative biases in the 0–0.6 V voltage range. Three different thermal dependences have been considered for explaining the whole set of experimental data. Two of them are linked to ohmic filamentary conduction; the CF shows a conductivity enhancement due to thermally activated mechanisms at low temperatures; on the contrary, a CF conductivity degradation is observed at the higher temperatures. Finally, an additional slightly higher value for the non-linear current component as the temperature rises has also been taken into account. A semiempirical compact model has been implemented including these conduction mechanisms and their corresponding temperature dependences, the device has been simulated in LT-Spice and the experimental currents have been correctly reproduced. [ABSTRACT FROM AUTHOR]- Published
- 2022
- Full Text
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3. Cybug – The Malicious File Detecting Software
- Author
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K R, Saradha, primary, T, Kavin, additional, G, Udayakumar, additional, A, Abdul Kalam K U, additional, S, Gayathri, additional, and Macriga, G. Adiline, additional
- Published
- 2023
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4. IoT Based Vehicle Tracking and Monitoring System Using Smart Application
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Jebamani, S Anitha, primary, D, Devi, additional, V, Saraswathi, additional, N, Aishwarya, additional, N, Rajesh, additional, and Abdul Kalam, K U A, additional
- Published
- 2023
- Full Text
- View/download PDF
5. Thermal Dependence of the Resistance of TiN/Ti/HfO2/Pt Memristors
- Author
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Jiménez-Molinos, F., primary, Vinuesa, G., additional, García, H., additional, Tarre, A., additional, Tamm, A., additional, Kalam, K., additional, Kukli, K., additional, Dueñas, S., additional, Castán, H., additional, González, M.B., additional, Campabadal, F., additional, Maldonado, D., additional, Cantudo, A., additional, and Roldán, J.B., additional
- Published
- 2023
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- View/download PDF
6. Effect of Temperature on the Multilevel Properties and Set and Reset Transitions in HfO2-Based Resistive Switching Devices
- Author
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Vinuesa, G., primary, García, H., additional, Ossorio, Ó. G., additional, García-Ochoa, E., additional, González, M.B., additional, Kalam, K., additional, Kukli, K., additional, Tamm, A., additional, Campabadal, F., additional, Castán, H., additional, and Dueñas, S., additional
- Published
- 2023
- Full Text
- View/download PDF
7. Thermal effects on TiN/Ti/HfO2/Pt memristors charge conduction
- Author
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Jiménez-Molinos, F., primary, Vinuesa, G., additional, García, H., additional, Tarre, A., additional, Tamm, A., additional, Kalam, K., additional, Kukli, K., additional, Dueñas, S., additional, Castán, H., additional, González, M. B., additional, Campabadal, F., additional, and Roldán, J. B., additional
- Published
- 2022
- Full Text
- View/download PDF
8. Books Tracking and Review Application
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S. Anitha Jebamani, R. Punitha, Rajesh N, Kavin T, and Abdul Kalam K U A
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- 2022
- Full Text
- View/download PDF
9. Renal allograft aspergilloma after renal transplantation treated with antifungal therapy with a favorable outcome: a case report
- Author
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Kalam K, Alsaeed M, and Albadani A
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Antifungal ,medicine.medical_specialty ,medicine.drug_class ,business.industry ,urologic and male genital diseases ,medicine.disease ,Surgery ,Transplantation ,Text mining ,medicine ,Renal allograft ,Favorable outcome ,business ,Aspergilloma - Abstract
Renal allograft aspergillus is a rare entity with a high mortality due to life-threatening complications. We report a case of renal aspergilloma causing obstructive uropathy after two months of transplantation in a 64 -year- old patient who was managed successfully with antifungal therapy without surgical intervention.
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- 2021
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10. Analysis of the Characteristic Current Fluctuations in the High Resistance State of HfO2-based Memristors
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Gonzalez, M. B., primary, Zabala, M., additional, Kalam, K., additional, Tamm, A., additional, Jimenez-Molinos, F., additional, Roldan, J. B., additional, and Campabadal, F., additional
- Published
- 2021
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11. In vivo Effect of Insulin to Decrease Matrix Metalloproteinase-2 and -9 Activity after Arterial Injury
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Guo, June, Dhaliwall, Jiwanjeet K., Chan, Kalam K., Ghanim, Husam, Al Koudsi, Nael, Lam, Loretta, Madadi, Golnaz, Dandona, Paresh, Giacca, Adria, and Bendeck, Michelle P.
- Published
- 2013
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12. Insulin Inhibits and Oral Sucrose Increases Neointimal Growth after Arterial Injury in Rats
- Author
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Breen, Danna M., Dhaliwall, Jiwanjeet K., Chan, Kalam K., Guo, June, Lam, Loretta, Bendeck, Michelle P., and Giacca, Adria
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- 2010
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13. Anti-Atherogenic Effect of Insulin in vivo
- Author
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Kim, Tony, Chan, Kalam K., Dhaliwall, Jiwanjeet K., Huynh, Nghia, Suen, Renee, Uchino, Hiroshi, Naigamwalla, Dinaz, Bendeck, Michelle P., and Giacca, Adria
- Published
- 2005
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14. Resistive Switching Properties of Atomic Layer Deposited ZrO2-HfO2 Thin Films
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Ossorio, O. G., primary, Duenas, S., additional, Castan, H., additional, Tamm, A., additional, Kalam, K., additional, Seemen, H., additional, and Kukli, K., additional
- Published
- 2018
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15. Insulin Inhibits and Oral Sucrose Increases Neointimal Growth after Arterial Injury in Rats
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Danna M. Breen, Michelle P. Bendeck, Loretta Lam, Adria Giacca, Jiwanjeet K. Dhaliwall, Kalam K. Chan, and June Guo
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Male ,Neointima ,Sucrose ,medicine.medical_specialty ,Physiology ,medicine.medical_treatment ,Administration, Oral ,Hypoglycemia ,Biology ,Lesion ,chemistry.chemical_compound ,Internal medicine ,medicine ,Hyperinsulinemia ,Animals ,Insulin ,Pancreatic hormone ,Dyslipidemias ,Fasting ,medicine.disease ,Rats ,stomatognathic diseases ,Glucose ,Endocrinology ,chemistry ,Circulatory system ,medicine.symptom ,Carotid Artery Injuries ,Tunica Intima ,Tunica Media ,Cardiology and Cardiovascular Medicine ,Angioplasty, Balloon - Abstract
Background/Aims: In our previous studies, rats on insulin treatment (5 U/day) and oral glucose to avoid hypoglycemia had reduced neointimal growth after arterial injury. However, plasma glucose in the insulin-treated rats was lower than normal and the effect of oral glucose remained undetermined. In this study, the effects of normoglycemic hyperinsulinemia and oral glucose or sucrose were investigated in the same model. Methods: Rats were divided into 6 groups: (1) control implants and tap water; (2) insulin implants (5 U/day) and oral glucose + i.p. glucose to avoid any glucose lowering; (3) insulin implants (4 U/day) and oral glucose; (4) insulin implants (4 U/day) and oral sucrose; (5) control implants and oral glucose, and (6) control implants and oral sucrose. Results: Insulin treatment at both doses reduced neointimal area (p < 0.001) 14 days after injury in rats receiving oral glucose but not in those receiving oral sucrose. Oral glucose, without insulin, had no effect on neointimal formation, whereas oral sucrose increased neointimal growth (p < 0.05). Oral sucrose (p < 0.05) but not oral glucose decreased insulin sensitivity measured with hyperinsulinemic clamps. Conclusions: (1) Insulin decreases neointimal growth after arterial injury independent of glucose-lowering or oral glucose administration and (2) oral sucrose per se affects neointimal growth.
- Published
- 2010
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16. Insulin Increases Reendothelialization and Inhibits Cell Migration and Neointimal Growth After Arterial Injury
- Author
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Paresh Dandona, Danna M. Breen, Michael R. Ward, Loretta Lam, Nael Al Koudsi, Duncan J. Stewart, Kalam K. Chan, Adria Giacca, Jiwanjeet K. Dhaliwall, Melissa De Souza, Husam Ghanim, and Michelle P. Bendeck
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Carotid Artery Diseases ,Male ,Neointima ,medicine.medical_specialty ,Endothelium ,medicine.medical_treatment ,Myocytes, Smooth Muscle ,Muscle, Smooth, Vascular ,Coronary Restenosis ,Cell Movement ,In vivo ,Internal medicine ,medicine ,Animals ,Insulin ,Myocyte ,Angioplasty, Balloon, Coronary ,Progenitor cell ,Pancreatic hormone ,business.industry ,Balloon catheter ,Rats ,Endocrinology ,medicine.anatomical_structure ,Endothelium, Vascular ,Insulin Resistance ,Tunica Intima ,Cardiology and Cardiovascular Medicine ,business - Abstract
Objective— Insulin has both growth-promoting and protective vascular effects in vitro, however the predominant effect in vivo is unclear. We investigated the effects of insulin in vivo on neointimal growth after arterial injury. Methods and Results— Rats were given subcutaneous control (C) or insulin implants (3U/d;I) 3 days before arterial (carotid or aortic) balloon catheter injury. Normoglycemia was maintained by oral glucose and, after surgery, by intraperitoneal glucose infusion (saline in C). Insulin decreased intimal area ( P P P P P Conclusions— These results are the first demonstration that insulin has a protective effect on both SMC and endothelium in vivo, resulting in inhibition of neointimal growth after vessel injury.
- Published
- 2009
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17. Admittance memory cycles of Ta2O5-ZrO2-based RRAM devices
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Duenas, S., primary, Castan, H., additional, Ossorio, O. G., additional, Dominguez, L. A., additional, Garcia, H., additional, Kalam, K., additional, Kukli, K., additional, Ritala, M., additional, and Leskela, M., additional
- Published
- 2017
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18. Contents Vol. 42, 2005
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Paolo Silacci, Demetrios A. Spandidos, Tony Kim, Marcia L. Ripley, Christian Rask-Madsen, Camilla Spohr, Gabriela Montorzi, Christian Torp-Pedersen, Lisa M. Geddis, Efstathios Papalambros, Thomas Steffen Hermann, Fragiska Sigala, Dimitrios Panutsopulos, Mercedes Ferrer, Nikolaj Ihlemann, J. Randall Moorman, Stephanie E. Wölfle, Joseph Y. Cheung, Jie Xu, Nghia Huynh, Hiroshi Uchino, Melissa K. Meeks, Adria Giacca, Michelle P. Bendeck, Christos Tsatsanis, Dimitrios L. Arvanitis, Dinaz Naigamwalla, Jill Reckless, Jiwanjeet K. Dhaliwall, Christopher M. Rembold, Sybille Wilbert, David J. Grainger, Renee Suen, Allan Vaag, Daping Yang, Gloria Balfagón, Helena Dominguez, Laurie Tatalick, Veronica Gambillara, Heidi Storgaard, Jian He, Christelle Haziza-Pigeon, Cor de Wit, Howard C. Kutchai, Elaine McKilligin, Haiyan Ge, Lars Køber, James T. Willerson, Javier Blanco-Rivero, Edward T.H. Yeh, Qing Li, Zhenhong Hao, Stephen Safe, Kalam K. Chan, Paolo Calabrò, Nikos Stergiopulos, Dorthe Baunbjerg Nielsen, Xiaolin Zhou, Ismael Samudio, Francesca M. Marassi, and Tiefang Guo
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Physiology ,Cardiology and Cardiovascular Medicine - Published
- 2005
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19. In vivo effect of insulin to decrease matrix metalloproteinase-2 and -9 activity after arterial injury
- Author
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Nael Al Koudsi, Golnaz Madadi, Jiwanjeet K. Dhaliwall, Adria Giacca, Loretta Lam, Michelle P. Bendeck, Paresh Dandona, Kalam K. Chan, June Guo, and Husam Ghanim
- Subjects
Blood Glucose ,Male ,medicine.medical_specialty ,Physiology ,Carotid Artery, Common ,medicine.medical_treatment ,Proteolysis ,Cell ,Administration, Oral ,Down-Regulation ,Matrix metalloproteinase ,Gene Expression Regulation, Enzymologic ,Extracellular matrix ,Rats, Sprague-Dawley ,In vivo ,Internal medicine ,medicine ,Hyperinsulinemia ,Matrix Metalloproteinase 14 ,Animals ,Insulin ,RNA, Messenger ,Drug Implants ,medicine.diagnostic_test ,Chemistry ,Tissue Inhibitor of Metalloproteinases ,Vascular System Injuries ,medicine.disease ,Rats ,Disease Models, Animal ,medicine.anatomical_structure ,Endocrinology ,Glucose ,Matrix Metalloproteinase 9 ,Matrix Metalloproteinase 2 ,Metabolic syndrome ,Cardiology and Cardiovascular Medicine ,Carotid Artery Injuries ,Angioplasty, Balloon - Abstract
In vitro, insulin has both growth-promoting and vasculoprotective effects. In vivo, the effect of insulin is mainly protective. Insulin treatment (3 U/day) decreases smooth muscle cell (SMC) migration and neointimal growth after carotid angioplasty in normal rats maintained at normoglycemia by oral glucose. SMC migration requires limited proteolysis of the extracellular matrix, which is mediated by matrix metalloproteinases (MMPs). In this study, we investigated the effects of normoglycemic hyperinsulinemia on MMP activity after balloon angioplasty. Rats were divided into three groups: (1) control implants and tap water; (2) control implants and oral glucose, and (3) insulin implants (3 U/day) and oral glucose. Results: Gelatin zymography revealed that insulin reduced the gelatinolytic activity of pro-MMP-2 by 46% (p < 0.05), MMP-2 by 44% (p < 0.05) and MMP-9 by 51% (p < 0.05) compared to controls after arterial injury. Insulin also reduced mRNA levels of MMP-2 (p < 0.05) and MMP-9 (p < 0.05) and protein levels of MMP-2 (p < 0.05). In contrast, there were no significant changes in membrane-type 1 MMP protein and tissue inhibitors of MMP activity after insulin treatment. Thus, these results suggest a mechanism by which insulin inhibits SMC migration and supports a vasculoprotective role for insulin in vivo.
- Published
- 2013
20. Effects of changes in estimated left ventricular filling pressure on functional and structural reverse remodelling of the left atrium
- Author
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Huynh, Q., primary, Kalam, K., additional, Iannaccone, A., additional, Negishi, K., additional, Thomas, L., additional, and Marwick, T., additional
- Published
- 2015
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21. Anti-atherogenic effect of insulin in vivo
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Jiwanjeet K. Dhaliwall, Michelle P. Bendeck, Kalam K. Chan, Hiroshi Uchino, Renee Suen, Tony Kim, Nghia Huynh, Adria Giacca, and Dinaz Naigamwalla
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Male ,medicine.medical_specialty ,Physiology ,medicine.medical_treatment ,Hyperlipidemias ,Biology ,Catheterization ,Rats, Sprague-Dawley ,Insulin resistance ,In vivo ,Internal medicine ,Hyperinsulinism ,Hyperlipidemia ,medicine ,Hyperinsulinemia ,Animals ,Insulin ,Pancreatic hormone ,Drug Implants ,Dose-Response Relationship, Drug ,medicine.disease ,Atherosclerosis ,Dietary Fats ,Rats ,Endocrinology ,Carotid Arteries ,Metabolic syndrome ,Cardiology and Cardiovascular Medicine ,Carotid Artery Injuries ,Tunica Intima ,Cell Division - Abstract
Metabolic syndrome is a risk factor for atherosclerosis and restenosis. In metabolic syndrome, insulin resistance coexists with hyperinsulinemia and hyperlipidemia. Hyperlipidemia has growth-promoting effects, whereas insulin has both growth-promoting and growth-inhibitory effects on vascular smooth muscle cells in vitro. The objective of this study was to investigate the effects of hyperlipidemia and hyperinsulinemia on vascular cell growth in vivo after arterial injury. Rats fed a low-fat diet were treated with either subcutaneous blank (LFC) or insulin (LFI) implants. Rats fed a high-fat diet also received blank (HFC) or insulin (HFI) implants. After 3 days, rats received balloon carotid injury, and 14 days later they were sacrificed to measure neointimal area and proliferation. Hyperinsulinemia was present in LFI and HFI and hyperlipidemia was present in HFC and HFI. Neointimal area was higher in HFC (0.153 ± 0.009 mm2, p < 0.05) but lower in LFI (0.098 ± 0.005, p < 0.01) than LFC (0.127 ± 0.005). In HFI (0.142 ± 0.008, p < 0.05) neointimal area was not different from HFC or LFC. In conclusion, insulin reduced neointimal growth, but the effect of insulin was diminished by the high-fat diet. Thus, our results demonstrate an anti-atherogenic effect of insulin in vivo and suggest that in metabolic syndrome insulin resistance rather than hyperinsulinemia is the atherogenic risk factor.
- Published
- 2004
22. HIV awareness of outgoing female migrant workers of Bangladesh: A pilot study
- Author
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Islam, Md Mofizul, Conigrave, Katherine, Miah, Md. Shahjahan, Kalam, K. A., Islam, Md Mofizul, Conigrave, Katherine, Miah, Md. Shahjahan, and Kalam, K. A.
- Abstract
Female migrant workers face a growing scale of unsafe migration, which increases their risk of HIV. Despite this, increasing numbers of women are migrating from Bangladesh to other countries as contractual workers. The aim of the study is to establish a baseline for the socio-demographic status of female migrant workers and the extent of their HIV/AIDS awareness along with the factors that determine it, and to discuss the need for effective HIV awareness programmes. During June-July 2008 data were collected by a questionnaire from 123 participants by approaching a cross section of women at the airport who were ready to fly to take up an overseas job. A total of 87% had heard of HIV/AIDS. Participants who had completed an education level of year ≥8 were more likely to have been informed about HIV than others. The average score in correct identification of modes of HIV infection was 1.6 (out of 4) and for preventive measures 1.8 (out of 5). Television and health workers were the major sources of HIV related knowledge. HIV-knowledge among the potential female migrant workers seems to be poor. As growing numbers of female workers are moving overseas for work, government and other concerned agencies must take a pro-active role to raise their awareness of HIV/AIDS infection and of effective preventive measures.
- Published
- 2010
23. Efficacy of cardioprotective agents in reduction of chemotherapy related cardiotoxicity
- Author
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Kalam, K., primary and Marwick, T., additional
- Published
- 2013
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24. Subject Index Vol. 42, 2005
- Author
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Dorthe Baunbjerg Nielsen, Adria Giacca, Joseph Y. Cheung, Marcia L. Ripley, Helena Dominguez, Christopher M. Rembold, Demetrios A. Spandidos, Dinaz Naigamwalla, Jiwanjeet K. Dhaliwall, Thomas Steffen Hermann, Ismael Samudio, Paolo Silacci, Qing Li, Tony Kim, Stephanie E. Wölfle, J. Randall Moorman, Gabriela Montorzi, Stephen Safe, Xiaolin Zhou, Jill Reckless, Heidi Storgaard, Cor de Wit, Lars Køber, Fragiska Sigala, Christian Rask-Madsen, Jian He, Sybille Wilbert, Kalam K. Chan, Paolo Calabrò, Howard Kutchai, Nikos Stergiopulos, Nghia Huynh, Christos Tsatsanis, Haiyan Ge, Melissa K. Meeks, Mercedes Ferrer, Allan Vaag, Dimitrios Panutsopulos, James T. Willerson, Laurie Tatalick, Christian Torp-Pedersen, Francesca M. Marassi, Efstathios Papalambros, Renee Suen, Tiefang Guo, Nikolaj Ihlemann, Hiroshi Uchino, Javier Blanco-Rivero, Dimitrios L. Arvanitis, Elaine McKilligin, Edward T.H. Yeh, Lisa M. Geddis, Zhenhong Hao, Camilla Spohr, David J. Grainger, Daping Yang, Gloria Balfagón, Veronica Gambillara, Jie Xu, Michelle P. Bendeck, and Christelle Haziza-Pigeon
- Subjects
Index (economics) ,Physiology ,Statistics ,Subject (documents) ,Cardiology and Cardiovascular Medicine ,Mathematics - Published
- 2005
- Full Text
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25. Tanks to the Reviewers
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Christos Tsatsanis, Adria Giacca, Demetrios A. Spandidos, Ismael Samudio, Joseph Y. Cheung, Marcia L. Ripley, Gloria Balfagón, Veronica Gambillara, Laurie Tatalick, Qing Li, Francesca M. Marassi, Christopher M. Rembold, Jill Reckless, Melissa K. Meeks, Mercedes Ferrer, Christian Torp-Pedersen, Stephanie E. Wölfle, Dimitrios L. Arvanitis, Gabriela Montorzi, Howard Kutchai, Lisa M. Geddis, Efstathios Papalambros, Elaine McKilligin, Sybille Wilbert, Tony Kim, Dinaz Naigamwalla, Jiwanjeet K. Dhaliwall, Dorthe Baunbjerg Nielsen, James T. Willerson, Allan Vaag, Dimitrios Panutsopulos, Javier Blanco-Rivero, Christian Rask-Madsen, Thomas Steffen Hermann, Cor de Wit, Edward T.H. Yeh, Stephen Safe, Paolo Calabrò, Nghia Huynh, Paolo Silacci, J. Randall Moorman, Nikolaj Ihlemann, Kalam K. Chan, Renee Suen, Heidi Storgaard, Lars Køber, Camilla Spohr, David J. Grainger, Jian He, Tiefang Guo, Christelle Haziza-Pigeon, Haiyan Ge, Nikos Stergiopulos, Helena Dominguez, Daping Yang, Jie Xu, Michelle P. Bendeck, Fragiska Sigala, Hiroshi Uchino, Xiaolin Zhou, and Zhenhong Hao
- Subjects
Physiology ,Cardiology and Cardiovascular Medicine - Published
- 2005
- Full Text
- View/download PDF
26. INSULIN INHIBITS INTIMAL THICKENING BY DECREASING VASCULAR SMOOTH MUSCLE CELL MIGRATION IN VIVO
- Author
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Nael Al Koudsi, Loretta Lam, Jiwanjeet K. Dhaliwall, Adria Giacca, Kalam K. Chan, Melissa De Souza, and Michelle P. Bendeck
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Pathology ,medicine.medical_specialty ,In vivo ,business.industry ,Vascular smooth muscle cell migration ,Medicine ,General Medicine ,Thickening ,Cardiology and Cardiovascular Medicine ,business ,Mural cell ,Pathology and Forensic Medicine - Published
- 2004
- Full Text
- View/download PDF
27. Is Stent Length Still a Major Predictor of Outcomes in the DES Era?
- Author
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Chandrasekhar, J., primary, Kalam, K., additional, Marley, P., additional, and Farshid, A., additional
- Published
- 2012
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28. Insulin Increases Reendothelialization and Inhibits Cell Migration and Neointimal Growth After Arterial Injury
- Author
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Breen, Danna M., primary, Chan, Kalam K., additional, Dhaliwall, Jiwanjeet K., additional, Ward, Michael R., additional, Al Koudsi, Nael, additional, Lam, Loretta, additional, De Souza, Melissa, additional, Ghanim, Husam, additional, Dandona, Paresh, additional, Stewart, Duncan J., additional, Bendeck, Michelle P., additional, and Giacca, Adria, additional
- Published
- 2009
- Full Text
- View/download PDF
29. Efficacy of Cardioprotective Agents in Reduction of Chemotherapy Related Cardiotoxicity
- Author
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Kalam, K. and Marwick, T.
- Published
- 2013
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30. INSULIN INHIBITS INTIMAL THICKENING BY DECREASING VASCULAR SMOOTH MUSCLE CELL MIGRATION IN VIVO
- Author
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Chan, Kalam K, Dhaliwall, Jiwanjeet, Koudsi, Nael Al, De Souza, Melissa, Lam, Loretta, Bendeck, Michelle P, and Giacca, Adria
- Published
- 2004
- Full Text
- View/download PDF
31. NeoDesign: a computational tool for optimal selection of polyvalent neoantigen combinations.
- Author
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Yu W, Yu H, Zhao J, Zhang H, Ke K, Hu Z, and Huang S
- Subjects
- Humans, RNA, Messenger genetics, Immunotherapy methods, Neoplasms therapy, Neoplasms immunology, Computational Biology methods, Antigens, Neoplasm immunology, Antigens, Neoplasm genetics, Software, Cancer Vaccines immunology
- Abstract
Motivation: Tumor polyvalent neoantigen mRNA vaccines are gaining prominence in immunotherapy. The design of sequences in vaccine development is crucial for enhancing both the immunogenicity and safety of vaccines. However, a major challenge lies in selecting the optimal sequences from the large pools generated by multiple peptide combinations and synonymous codons., Results: We introduce NeoDesign, a computational tool designed to tackle the challenge of sequence design. NeoDesign comprises four modules: Library Construction, Optimal Path Filtering, Linker Addition, and λ-Evaluation. It aims to identify the optimal protein sequence for tumor polyvalent neoantigen vaccines by minimizing linker usage, avoiding unexpected neoantigens and functional domains, and simplifying the structure. It also provides a preference scheme to balance mRNA stability and protein expression when designing mRNA sequences for the optimal protein sequence. This tool can potentially improve the sequence design of tumor polyvalent neoantigen mRNA vaccines, thereby significantly advancing immunotherapy strategies., Availability and Implementation: NeoDesign is freely available on https://github.com/HuangLab-Fudan/neoDesign and https://figshare.com/projects/NeoDesign/221704., (© The Author(s) 2024. Published by Oxford University Press.)
- Published
- 2024
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32. Tongue coating metabolic profiles of intra-oral halitosis patients.
- Author
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Lo K, Liman AN, Zhang Y, and Ye W
- Abstract
Objective: This study focused on the metabolic characteristics of tongue coating in patients with intra-oral halitosis (IOH) to investigate potential diagnostic biomarkers for IOH., Methods: Oral healthy participants were enrolled in this study. Halitosis was evaluated with an organoleptic assessment, a Halimeter®, and an OralChroma™. Tongue coating samples were collected from 18 halitosis patients and 18 healthy controls. Liquid chromatography-mass spectrometry was conducted to reveal the IOH-related metabolic variations in tongue coating., Results: A total of 2214 metabolites were obtained. Most metabolites were shared between the two groups. A total of 274 upregulated metabolites, such as paramethasone acetate and indole-3-acetic acid, and 43 downregulated metabolites, including deoxyadenosine and valyl-arginine, were detected in the halitosis group. Functional analysis indicated that several metabolic pathways, including arginine biosynthesis, arginine and proline metabolism, histidine metabolism, and lysine degradation were significantly enriched in the IOH group. The least absolute shrinkage and selection operator logistic regression analysis revealed that paramethasone acetate, {1-[2-(4-carbamimidoyl-benzoylamino)-propionyl]-piperidin-4-yloxy}-acetic acid, indole-3-acetic acid, and valyl-arginine were remarkably associated with IOH., Conclusions: This study revealed the metabolites present in tongue coating and identified effective biomarkers, providing essential insights into the prediction, pathogenesis, and diagnosis of IOH., (© 2024 Wiley Periodicals LLC.)
- Published
- 2024
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33. Premature termination of inpatient eating disorder treatment: Does timing matter?
- Author
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Smith S, Sutandar K, and Woodside B
- Abstract
Background: Premature termination of treatment is a serious problem in the treatment of eating disorders. Prior research attempting to differentiate patients who are able to complete treatment from those who terminate early has yielded mixed results. One proposed explanation for this is a failure to examine the time course of treatment termination. This study was designed to explore associations between baseline patient characteristics and timing of treatment termination., Methods: Participants were 124 eating disorder patients admitted voluntarily to the inpatient program at Toronto General Hospital between 2009 and 2015. At admission, all patients completed measures of eating disorder symptoms, eating disorder cognitions, depressive symptoms and emotional dysregulation. Body weight was measured weekly. Data analyses were completed using one-way ANOVAs and Chi Square tests., Results: Results showed significant associations between timing of treatment termination and eating disorder diagnosis, severity of eating disorder cognitions and severity of depressive symptoms. Post-hoc analyses revealed that patients who left treatment early had more severe depressive symptoms, eating disorder cognitions related to eating and difficulties engaging in goal directed behaviors when emotionally dysregulated., Conclusions: Patients who terminated inpatient treatment early in their admissions differ from patients who terminated later and those who completed treatment. These differences have potential clinical implications for the clinical management of patients with severe eating disorders requiring inpatient admission. Trial registration This paper is not associated with a clinical trial., (© 2023. The Author(s).)
- Published
- 2023
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34. Properties of tin oxide films grown by atomic layer deposition from tin tetraiodide and ozone.
- Author
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Kalam K, Ritslaid P, Käämbre T, Tamm A, and Kukli K
- Abstract
Polycrystalline SnO
2 thin films were grown by atomic layer deposition (ALD) on SiO2 /Si(100) substrates from SnI4 and O3 . Suitable evaporation temperatures for the SnI4 precursor as well as the relationship between growth per cycle and substrate temperature were determined. Crystal growth in the films in the temperature range of 225-600 °C was identified. Spectroscopic analyses revealed low amounts of residual iodine and implied the formation of single-phase oxide in the films grown at temperatures above 300 °C. Appropriateness of the mentioned precursor system to the preparation of SnO2 films was established., (Copyright © 2023, Kalam et al.)- Published
- 2023
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35. Memory Effects in Nanolaminates of Hafnium and Iron Oxide Films Structured by Atomic Layer Deposition.
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Kalam K, Otsus M, Kozlova J, Tarre A, Kasikov A, Rammula R, Link J, Stern R, Vinuesa G, Lendínez JM, Dueñas S, Castán H, Tamm A, and Kukli K
- Abstract
HfO
2 and Fe2 O3 thin films and laminated stacks were grown by atomic layer deposition at 350 °C from hafnium tetrachloride, ferrocene, and ozone. Nonlinear, saturating, and hysteretic magnetization was recorded in the films. Magnetization was expectedly dominated by increasing the content of Fe2 O3 . However, coercive force could also be enhanced by the choice of appropriate ratios of HfO2 and Fe2 O3 in nanolaminated structures. Saturation magnetization was observed in the measurement temperature range of 5-350 K, decreasing towards higher temperatures and increasing with the films' thicknesses and crystal growth. Coercive force tended to increase with a decrease in the thickness of crystallized layers. The films containing insulating HfO2 layers grown alternately with magnetic Fe2 O3 exhibited abilities to both switch resistively and magnetize at room temperature. Resistive switching was unipolar in all the oxides mounted between Ti and TiN electrodes.- Published
- 2022
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36. Long-term follow-up of deep brain stimulation for anorexia nervosa.
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De Vloo P, Lam E, Elias GJ, Boutet A, Sutandar K, Giacobbe P, Woodside DB, Lipsman N, and Lozano A
- Subjects
- Anorexia Nervosa physiopathology, Follow-Up Studies, Humans, Prospective Studies, Treatment Outcome, Anorexia Nervosa therapy, Deep Brain Stimulation, Gyrus Cinguli physiopathology
- Abstract
Competing Interests: Competing interests: Dr. De Vloo has received grants from Research Fund-Flanders, the European Society for Stereotactic and Functional Neurosurgery, the Helaers Foundation, Medtronic, Boston Scientific, and St Jude-Abbott. Dr. Sutandar has received grants from the Klarman Family Foundation and the Canadian Institutes of Health Research. Dr. Lozano has received personal fees from Medtronic, Boston Scientific, St Jude-Abbott, and Functional Neuromodulation.
- Published
- 2021
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37. The Ethical Defensibility of Harm Reduction and Eating Disorders.
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Bianchi A, Stanley K, and Sutandar K
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- Harm Reduction, Humans, Morals, Anorexia Nervosa therapy, Feeding and Eating Disorders therapy, Substance-Related Disorders
- Abstract
Eating disorders are mental illnesses that can have a significant and persistent physical impact, especially for those who are not treated early in their disease trajectory. Although many persons with eating disorders may make a full recovery, some may not; this is especially the case when it comes to persons with severe and enduring anorexia nervosa (SEAN), namely, those who have had anorexia for between 6 and 12 years or more. Given that persons with SEAN are less likely to make a full recovery, a different treatment philosophy might be ethically warranted. One potential yet scarcely considered way to treat persons with SEAN is that of a harm reduction approach. A harm reduction philosophy is deemed widely defensible in certain contexts (e.g. in the substance use and addictions domain), and in this paper we argue that it may be similarly ethically defensible for treating persons with SEAN in some circumstances.
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- 2021
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38. Atomic layer deposited nanolaminates of zirconium oxide and manganese oxide from manganese(III)acetylacetonate and ozone.
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Kalam K, Rammula R, Ritslaid P, Käämbre T, Link J, Stern R, Vinuesa G, Dueñas S, Castán H, Tamm A, and Kukli K
- Abstract
Atomic layer deposition method was used to grow thin films consisting of ZrO
2 and MnOx layers. Magnetic and electric properties were studied of films deposited at 300 °C. Some deposition characteristics of the manganese(III)acetylacetonate and ozone process were investigated, such as the dependence of growth rate on the deposition temperature and film crystallinity. All films were partly crystalline in their as-deposited state. Zirconium oxide contained cubic and tetragonal phases of ZrO2 , while the manganese oxide was shown to consist of cubic Mn2 O3 and tetragonal Mn3 O4 phases. All the films exhibited nonlinear saturative magnetization with hysteresis, as well as resistive switching characteristics., (Creative Commons Attribution license.)- Published
- 2021
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39. Experimental investigation of high alcohol low viscous renewable fuel in DI diesel engine.
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Wang S, Viswanathan K, Esakkimuthu S, and Azad K
- Subjects
- Biofuels, Esterification, Ethanol, Gasoline, Vehicle Emissions
- Abstract
This study offered a comprehensive investigation on engine performance and emission characteristics of Kirloskar make tangentially vertical (TV1) model single-cylinder direct injection diesel engine fuelled with diesel as a benchmark fuel. Steam distilled orange oil was converted into orange oil methyl ester (OME) by means of transesterification process. The physical and chemical properties of fuels were measured and conformed to ASTM biodiesel standards and compared with diesel. Likewise, the chemical compositions of the prepared biodiesel were estimated by using GC-MS analysis. OME comprises of 86.37% of (E)-3-propylidenecyclopentene (C
8 H12 ) in the maximum range. The presence of free fatty acids such as linoleic acid, palmitic acid and myristic acid in OME permits it to be the acceptable renewable resource for the production of biodiesel. Further, the work was progressed with the addition of oxygenated additives like ethanol and diethyl ether to OME to attain the improved fuel properties. Five and 10% volume of ethanol and diethyl ether were added to OME as oxygenated additives respectively. OME10DEE showed higher performance characteristics than diesel and OME blends. Further, a significant reduction in HC, NOx and smoke emission was noticed with OME10DEE. The present work recommended the application of OME10DEE as an alternative fuel on account of its better engine performance and emission characteristics than other fuel blends.- Published
- 2021
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40. Mucormycosis: An 8-year experience of a tertiary care centre in Saudi Arabia.
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Elzein F, Albarrag A, Kalam K, Arafah M, Al-Baadani A, Eltayeb N, Aloteibi F, Alrashed A, Abdullah RA, and Alasiri S
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- Adolescent, Adult, Aged, Antifungal Agents therapeutic use, Debridement, Female, Humans, Male, Middle Aged, Retrospective Studies, Saudi Arabia epidemiology, Tertiary Care Centers, Young Adult, Mucormycosis diagnosis, Mucormycosis epidemiology, Mucormycosis therapy
- Abstract
Mucormycosis is a rare fungal infection with an extremely high morbidity and mortality. Data on the burden of the disease in the Arab world is lacking. The aim of this study is to highlight the incidence and outcome of this infection in a tertiary care center in the Kingdom of Saudi Arabia (KSA). In this retrospective study we included all mucormycosis cases admitted to our center between January 2013 and December 2019. A total of 18 proven patients with a median age of 43.5 years (range 13-72 years, 72% males) were identified. The most common presentation was cutaneous and rhino-orbito-cerebral, followed by gastrointestinal mucormycosis. Apophysomyces variabilisRhizopus oryzae) were the main fungal isolates on molecular testing. Trauma was the chief underlying etiology (41.0%) with motor vehicle accident (MVCs) being the predominant type (43.0%). For this reason, most of our patients were young with cutaneous disease and had a better prognosis. All patients received liposomal amphotericin B alone or in combination with other antifungal agents. Repeated aggressive debridement and reversal of the underlying factor was attempted in all patients. This underscores the lower mortality (27.8%) seen in this group. The diagnosis of Mucorales infection is challenging. A high index of suspicion with prompt treatment is required to improve the high mortality of this aggressive disease. Further studies are needed to understand the epidemiology and outcome of this disease in Saudi Arabia., (Copyright © 2020 The Author(s). Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2020
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41. Design, Synthesis and Pharmacological Evaluation of Some C 3 Heterocyclic-Substituted Ciprofloxacin Derivatives as Chimeric Antitubercular Agents.
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Niveditha N, Begum M, Prathibha D, Sirisha K, Mahender P, Chitra C, Rao VR, Reddy VM, and Achaiah G
- Subjects
- Antitubercular Agents chemical synthesis, Antitubercular Agents chemistry, Ciprofloxacin chemical synthesis, Ciprofloxacin chemistry, Dose-Response Relationship, Drug, Drug Resistance, Bacterial drug effects, Heterocyclic Compounds chemical synthesis, Heterocyclic Compounds chemistry, Microbial Sensitivity Tests, Molecular Structure, Structure-Activity Relationship, Antitubercular Agents pharmacology, Ciprofloxacin pharmacology, Drug Design, Heterocyclic Compounds pharmacology, Mycobacterium tuberculosis drug effects
- Abstract
A series of new C
3 heterocyclic-substituted ciprofloxacin derivatives were prepared from ciprofloxacin acid hydrazide as possible chimeric molecules. They were evaluated for their possible in vitro antibacterial (agar cup/bore diffusion method) and antitubercular (Lowenstein-Jensen (LJ) slant method) activities. The results indicated that all the test compounds are highly effective against all the bacterial strains and have shown excellent anti-tubercular activity against normal, multidrug resistant and extensively drug resistant strains of Mycobacterium tuberculosis. They were found to be more potent antibacterial and antitubercular agents than the standard, ciprofloxacin. The minimum inhibitory concentration (MIC)'s of all the compounds against M. tuberculosis were found to be 0.0625 µg/mL as compared to ciprofloxacin (MIC = 2 to > 8 µg/mL). Molecular docking studies were performed by using AUTODOCK 4.2 on the new ciprofloxacin derivatives at the active site of crystal structure of fluoroquinolones target enzyme Mtb DNA gyrase GyrA N-terminal domain (PDB ID: 3ILW) and also on the active site of crystal structure of chosen heterocyclics target enzyme enoyl-acyl carrier protein (ACP) reductase enzyme (PDB ID: 4TZK). Interestingly, almost all the compounds have shown relatively greater binding affinity at both the active sites than ciprofloxacin. Compound 6 exhibited the highest affinity for 3ILW and 4TZK.- Published
- 2020
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42. Miliary tuberculosis presenting as bilateral superficial femoral artery mycotic aneurysm in an immunocompetent patient.
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Elzein F, Qatan N, Alghamdi A, Albarrak A, and Kalam K
- Abstract
Mycotic tuberculous aneurysm is extremely rare. The aorta is the main affected artery however; iliac and less commonly femoral arteries can also be affected. In 75% of the cases a contagious focus leads to infection through erosion of the vessel wall; on the other hand direct seeding of the blood vessel wall via the vasa vasorum may occur in 25%. In a large number of patients it may be a manifestation of miliary tuberculosis. In this case report we describe an immunocompetent patient who presented with bilateral superficial femoral artery aneurysms, followed by bilateral testicular swellings and inferior mesenteric artery aneurysm, as a presentation of military tuberculosis. Early diagnosis of such patients is essential for initiation of both medical and surgical treatment in order to avoid catastrophic outcome of rupture and bleeding.
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- 2019
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43. Treatment of cerebral mucormycosis with drug therapy alone: A case report.
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Elzein F, Kalam K, Mohammed N, Elzein A, Alotaibi FZ, Khan M, and Albadani A
- Abstract
We report on an elderly male patient with headache and right-side weakness. Imaging studies revealed multiple space-occupying lesions in the parietal and occipital cerebral regions. Biopsy revealed broad aseptate ribbon-like structures branching at right angles, suggestive of mucormycosis. Improvement was observed after medical therapy with 20 weeks of liposomal amphotericin B (5 mg/kg/day) combined with posaconazole, followed by posaconazole (400 mg twice a day) alone for 1 month. The patient recovered without neurological deficits; however, multidrug-resistant bacteraemia and hospital-acquired pneumonia occurred, resulting in death. Nevertheless, our report shows that this lethal fungal infection can sometimes show favourable progress with drug therapy alone.
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- 2018
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44. Atomic layer deposition and properties of ZrO 2 /Fe 2 O 3 thin films.
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Kalam K, Seemen H, Ritslaid P, Rähn M, Tamm A, Kukli K, Kasikov A, Link J, Stern R, Dueñas S, Castán H, and García H
- Abstract
Thin solid films consisting of ZrO
2 and Fe2 O3 were grown by atomic layer deposition (ALD) at 400 °C. Metastable phases of ZrO2 were stabilized by Fe2 O3 doping. The number of alternating ZrO2 and Fe2 O3 deposition cycles were varied in order to achieve films with different cation ratios. The influence of annealing on the composition and structure of the thin films was investigated. Additionally, the influence of composition and structure on electrical and magnetic properties was studied. Several samples exhibited a measurable saturation magnetization and most of the samples exhibited a charge polarization. Both phenomena were observed in the sample with a Zr/Fe atomic ratio of 2.0.- Published
- 2018
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45. Magnetic and Electrical Performance of Atomic Layer Deposited Iron Erbium Oxide Thin Films.
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Tamm A, Kalam K, Seemen H, Kozlova J, Kukli K, Aarik J, Link J, Stern R, Dueñas S, and Castán H
- Abstract
Mixed films of a high-permittivity oxide, Er
2 O3 , and a magnetic material, Fe2 O3 , were grown by atomic layer deposition on silicon and titanium nitride at 375 °C using erbium diketonate, ferrocene, and ozone as precursors. Crystalline phases of erbium and iron oxides were formed. Growth into three-dimensional trenched structures was demonstrated. A structure deposited using tens to hundreds subsequent cycles for both constituent metal oxide layers promoted both charge polarization and saturative magnetization compared to those in the more homogeneously mixed films., Competing Interests: The authors declare no competing financial interest.- Published
- 2017
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46. Deep brain stimulation of the subcallosal cingulate for treatment-refractory anorexia nervosa: 1 year follow-up of an open-label trial.
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Lipsman N, Lam E, Volpini M, Sutandar K, Twose R, Giacobbe P, Sodums DJ, Smith GS, Woodside DB, and Lozano AM
- Subjects
- Adult, Anxiety therapy, Body Mass Index, Brain diagnostic imaging, Deep Brain Stimulation adverse effects, Depression therapy, Female, Follow-Up Studies, Glucose metabolism, Humans, Magnetic Resonance Imaging, Male, Middle Aged, Ontario, Prospective Studies, Psychiatric Status Rating Scales, Quality of Life, Recurrence, Treatment Outcome, Young Adult, Anorexia Nervosa psychology, Anorexia Nervosa therapy, Brain pathology, Deep Brain Stimulation methods
- Abstract
Background: Anorexia nervosa is a life-threatening illness. Brain circuits believed to drive anorexia nervosa symptoms can be accessed with surgical techniques such as deep brain stimulation (DBS). Initial results suggest that DBS of the subcallosal cingulate is safe and associated with improvements in mood and anxiety. Here, we investigated the safety, clinical, and neuroimaging outcomes of DBS of the subcallosal cingulate in a group of patients during 12 months of active stimulation., Methods: We did this prospective open-label trial at the Department of Surgery of the University of Toronto (Toronto, ON, Canada). Patients were eligible to participate if they were aged 20-60 years and had a diagnosis of anorexia nervosa (restricting or binge-purging subtype) and a demonstrated history of chronicity or treatment resistance. Following a period of medical stabilisation, patients underwent surgery for DBS and received open-label continuous stimulation for the entire 1 year study duration. The primary outcome was safety and acceptability of the procedure. The secondary outcomes were body-mass index (BMI), mood, anxiety, affective regulation, and anorexia nervosa-specific behaviours at 12 months after surgery, as well as changes in neural circuitry (measured with PET imaging of cerebral glucose metabolism at baseline and at 6 and 12 months after surgery). This trial was registered with ClinicalTrials.gov, number NCT01476540., Findings: 16 patients with treatment-refractory anorexia nervosa were enrolled between September, 2011, and January, 2014, and underwent DBS of the subcallosal cingulate between November, 2011, and April, 2014. Patients had a mean age of 34 years (SD 8) and average illness duration of 18 years (SD 6). Two patients requested that their devices be removed or deactivated during the study, although their reasons for doing so were poorly defined. The most common adverse event was pain related to surgical incision or positioning that required oral analgesics for longer than 3-4 days after surgery (five [31%] of 16 patients). Seven (44%) of 16 patients had serious adverse events, most of which were related to the underlying illness, including electrolyte disturbances. Average BMI at surgery was 13·83 (SD 1·49) and 14 (88%) of the 16 patients had comorbid mood disorders, anxiety disorders, or both. Mean BMI after 12 months of stimulation was 17·34 (SD 3·40; p=0·0009 vs baseline). DBS was associated with significant improvements in measures of depression (mean Hamilton Depression Rating Scale scores 19·40 [SD 6·76] at baseline vs 8·79 [7·64] at 12 months; p=0·00015), anxiety (mean Beck Anxiety Inventory score 38·00 [15·55] vs 27·14 [18·39]; p=0·035), and affective regulation (mean Dysfunction in Emotional Regulation Scale score 131·80 [22·04] vs 104·36 [31·27]; p=0·019). We detected significant changes in cerebral glucose metabolism in key anorexia nervosa-related structures at both 6 months and 12 months of ongoing brain stimulation., Interpretation: In patients with chronic treatment-refractory anorexia nervosa, DBS is well tolerated and is associated with significant and sustained improvements in affective symptoms, BMI, and changes in neural circuitry at 12 months after surgery., Funding: Klarman Family Foundation Grants Program in Eating Disorders Research and Canadian Institutes of Health Research., (Copyright © 2017 Elsevier Ltd. All rights reserved.)
- Published
- 2017
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47. Borrelia burgdorferi Induces TLR2-Mediated Migration of Activated Dendritic Cells in an Ex Vivo Human Skin Model.
- Author
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Mason LM, Wagemakers A, van 't Veer C, Oei A, van der Pot WJ, Ahmed K, van der Poll T, Geijtenbeek TB, and Hovius JW
- Subjects
- Biomarkers, Cell Survival, Cytokines metabolism, Humans, Lyme Disease immunology, Lyme Disease metabolism, Lyme Disease microbiology, Skin immunology, Skin metabolism, Skin microbiology, Borrelia burgdorferi physiology, Cell Movement immunology, Dendritic Cells immunology, Dendritic Cells metabolism, Toll-Like Receptor 2 metabolism
- Abstract
Borrelia burgdorferi is transmitted into the skin of the host where it encounters and interacts with two dendritic cell (DC) subsets; Langerhans cells (LCs) and dermal DCs (DDCs). These cells recognize pathogens via pattern recognition receptors, mature and migrate out of the skin into draining lymph nodes, where they orchestrate adaptive immune responses. In order to investigate the response of skin DCs during the early immunopathogenesis of Lyme borreliosis, we injected B. burgdorferi intradermally into full-thickness human skin and studied the migration of DCs out of the skin, the activation profile and phenotype of migrated cells. We found a significant increase in the migration of LCs and DDCs in response to B. burgdorferi. Notably, migration was prevented by blocking TLR2. DCs migrated from skin inoculated with higher numbers of spirochetes expressed significantly higher levels of CD83 and produced pro-inflammatory cytokines. No difference was observed in the expression of HLA-DR, CD86, CD38, or CCR7. To conclude, we have established an ex vivo human skin model to study DC-B. burgdorferi interactions. Using this model, we have demonstrated that B. burgdorferi-induced DC migration is mediated by TLR2. Our findings underscore the utility of this model as a valuable tool to study immunity to spirochetal infections., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2016
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48. Paradonghicola geojensis gen. nov., sp. nov., isolated from seawater, Geoje-si, South Korea.
- Author
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Lee K, Srinivasan S, and Lee SS
- Subjects
- Base Composition, DNA, Bacterial genetics, Fatty Acids analysis, Molecular Typing, Phosphatidylethanolamines analysis, Phosphatidylglycerols analysis, Phylogeny, RNA, Ribosomal, 16S genetics, Republic of Korea, Rhodobacteraceae isolation & purification, Sequence Analysis, DNA, Ubiquinone analysis, Rhodobacteraceae classification, Rhodobacteraceae genetics, Seawater microbiology
- Abstract
A Gram-negative, non-motile, non-spore-forming and aerobic bacterium, designated FJ12(T), was isolated from seawater, Geoje-si, South Korea. Strain FJ12(T) was catalase and oxidase positive. Growth of strain FJ12(T) was optimally observed at 30 °C and pH 6 and grew in the presence of 0-11 % (w/v) NaCl (optimum 2-3 % NaCl). The phylogenic analysis based on 16S rRNA gene sequence of strains FJ12(T) showed the highest sequence similarity to those of Doghicola eburneus KCTC 12735(T) (95.4 %), Aestuariihabitans beolgyonensis KTCT 32324(T) (95.3 %), Sulfitobacter pontiacus KCTC 32185(T) (94.9 %), Roseisalinus antarcticus DSM 11466(T) (94.8 %) and Loktanella soesokkaensis KCTC 32425(T) (94.7 %). The major polar lipids of FJ12(T) were phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, an unidentified aminolipid and unidentified lipids. It contained Q-10 as the predominant ubiquinone, and major fatty acid is C18:1 ω7c (51.7 %), C16:0 (24.0 %). The DNA G+C content of the strain FJ12(T) was 60 mol%. Based on physiological and chemotaxonomic characteristics, strain FJ12(T) should be regarded as the type species of a novel genus in the family Rhodobacteraceae for which the name Paradonghicola geojensis sp. nov. is proposed. The type strain FJ12(T) (=KEMB 3001-336(T)=JCM 30384(T)).
- Published
- 2016
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49. Aneurinibacillus humi sp. nov., Isolated from Soil Collected in Ukraine.
- Author
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Lee K and Lee SS
- Subjects
- Aerobiosis, Bacillales genetics, Bacillales physiology, Bacterial Typing Techniques, Base Composition, Cell Wall chemistry, Cluster Analysis, Cytosol chemistry, DNA, Bacterial chemistry, DNA, Bacterial genetics, DNA, Ribosomal chemistry, DNA, Ribosomal genetics, Diaminopimelic Acid analysis, Fatty Acids analysis, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Peptidoglycan analysis, Phylogeny, RNA, Ribosomal, 16S genetics, Sequence Analysis, DNA, Sodium Chloride metabolism, Spores, Bacterial growth & development, Temperature, Ukraine, Vitamin K 2 analysis, Bacillales classification, Bacillales isolation & purification, Soil Microbiology
- Abstract
A novel bacterium, designated U33(T), was isolated from a soil sample collected in Mykhailyky, Poltavs'ka oblast, Ukraine. The bacterium was aerobic, Gram-positive, spore-forming, and consists of motile rods. The taxonomic position of strain U33(T) was studied by a polyphasic approach, and the results clearly showed that the phenotypic and chemotaxonomic properties are consistent with those of the genus Aneurinibacillus. The phylogenic analysis with 16S rRNA gene sequence of strains U33(T) showed the highest sequence similarity to those of Aneurinibacillus aneuriniticus ATCC 12856(T) (96.7 %), Aneurinibacillus migulanus DSM 2895(T) (96.7 %), Aneurinibacillus danicus NCIMB 13288(T) (95.8 %), and lower sequence similarity with other members of the genus Aneurinibacillus. Growth was observed at 20-55 °C (optimum, 37 °C) at pH 5.0-9.0 (optimum, pH 7) and with 0-5 % (w/v) NaCl (optimum, 2 % NaCl). The predominant menaquinone was MK-7 and the cell wall peptidoglycan consist of meso-diaminopimelic acid. The major cellular fatty acids are iso-C15:0 (58.0 %) and anteiso-C15:0 (13.2 %). The DNA G+C content of the strain U33(T) was 45.8 %. The physiological and chemotaxonomic characteristics distinguish strain U33(T) from the validly published species of genus Aneurinibacillus, and therefore, we consider this strain to represent a novel species of the genus Aneurinibacillus. The name Aneurinibaciilus humi sp. nov. is proposed with strain U33(T) (= KEMC7305-119(T) = JCM19865(T)) as the type strain.
- Published
- 2016
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50. Functional and Anatomic Responses of the Left Atrium to Change in Estimated Left Ventricular Filling Pressure.
- Author
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Huynh QL, Kalam K, Iannaccone A, Negishi K, Thomas L, and Marwick TH
- Subjects
- Female, Follow-Up Studies, Heart Atria diagnostic imaging, Humans, Male, Middle Aged, Retrospective Studies, Stroke Volume physiology, Time Factors, Ventricular Dysfunction, Left diagnostic imaging, Ventricular Function, Left physiology, Atrial Function, Left physiology, Atrial Remodeling physiology, Echocardiography, Doppler, Pulsed methods, Heart Atria physiopathology, Ventricular Dysfunction, Left physiopathology, Ventricular Pressure physiology
- Abstract
Background: Left atrial (LA) remodeling and dysfunction reflect chronic exposure to elevated left ventricular (LV) filling pressures. The aim of this longitudinal cohort study was to define the effect of reducing LV filling pressures on reverse remodeling of LA volume (LAV) and function., Methods: This retrospective cohort included 195 patients (52% men; mean age, 64 ± 14 years) in sinus rhythm with LA dilatation and sequential echocardiograms (median interval, 1 year; interquartile range, 0.5-2.0 years). One hundred seventy-four patients underwent medical therapy (82 with reduced E/e' ratios), and 21 underwent surgery for valvular heart disease. Biplane LAV (normal value, ≤ 68 mL for men, ≤ 62 mL for women), LA strain (ε) (normal value, >32%) and LV filling pressures (assessed as E/e' ratio; normal value, <13) were measured., Results: Although LAV at baseline and follow-up were 88 ± 27 and 81 ± 24 mL, LA ε and E/e' ratio remained stable at 26 ± 11% and 14 ± 7, respectively. Changes in E/e' ratio were associated with changes in LAV (r = 0.37, P < .001) and LA ε (r = -0.51 P < .001). Although reduced E/e' ratio or improved LA ε at follow-up occurred in about 50% of the patients, only 26% (51 of 195) had normalized LAV. Compared with surgery, successful reduction of E/e' with medical therapy was less effective in reducing LAV (P < .001) but produced similar improvement in LA ε. Having normal or improved E/e' ratio at follow-up was not associated with normalization of LAV (relative risk, 1.29 [P = .326] and 1.22 [P = .421], respectively) but was associated with normalized LA ε (relative risk, 2.04 [P = .011] and 1.86 [P = .017], respectively) independently of LAV., Conclusions: Reduction in LV filling pressures reduces but rarely normalizes LAV. The strong association of reduced LV filling pressure with improved LA function indicated by LA longitudinal ε supports the increasing interest of LA ε measurement., (Copyright © 2015 American Society of Echocardiography. Published by Elsevier Inc. All rights reserved.)
- Published
- 2015
- Full Text
- View/download PDF
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