101 results on '"Joukhadar R"'
Search Results
2. Introduction of a student tutor-based basic obstetrical ultrasound screening in undergraduate medical education
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Hamza, A., Radosa, J. C., Solomayer, E.-F., Takacs, Z., Juhasz-Boess, I., Ströder, R., Joukhadar, R., Nourkami-Tutdibi, N., Tutdibi, E., Zemlin, M., and Meyberg-Solomayer, G.
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- 2019
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3. Robot-assisted pelvic floor reconstructive surgery: an international Delphi study of expert users
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Simoncini, T., Panattoni, A., Aktas, M., Ampe, J., Betschart, C., Bloemendaal, A. L. A., Buse, S., Campagna, Giuseppe, Caretto, M., Cervigni, Mauro, Consten, E. C. J., Davila, H. H., Dubuisson, J., Espin-Basany, E., Fabiani, B., Faucheron, J. -L., Giannini, A., Gurland, B., Hahnloser, D., Joukhadar, R., Mannella, P., Mereu, L., Martellucci, J., Meurette, G., Montt Guevara, M. M., Ratto, Carlo, O'Reilly, B. A., Reisenauer, C., Russo, Elisa, Schraffordt Koops, S., Siddiqi, S., Sturiale, A., Naldini, G., Campagna G., Cervigni M., Ratto C. (ORCID:0000-0002-0556-0037), Russo E., Simoncini, T., Panattoni, A., Aktas, M., Ampe, J., Betschart, C., Bloemendaal, A. L. A., Buse, S., Campagna, Giuseppe, Caretto, M., Cervigni, Mauro, Consten, E. C. J., Davila, H. H., Dubuisson, J., Espin-Basany, E., Fabiani, B., Faucheron, J. -L., Giannini, A., Gurland, B., Hahnloser, D., Joukhadar, R., Mannella, P., Mereu, L., Martellucci, J., Meurette, G., Montt Guevara, M. M., Ratto, Carlo, O'Reilly, B. A., Reisenauer, C., Russo, Elisa, Schraffordt Koops, S., Siddiqi, S., Sturiale, A., Naldini, G., Campagna G., Cervigni M., Ratto C. (ORCID:0000-0002-0556-0037), and Russo E.
- Abstract
Background: Robotic surgery has gained popularity for the reconstruction of pelvic floor defects. Nonetheless, there is no evidence that robot-assisted reconstructive surgery is either appropriate or superior to standard laparoscopy for the performance of pelvic floor reconstructive procedures or that it is sustainable. The aim of this project was to address the proper role of robotic pelvic floor reconstructive procedures using expert opinion. Methods: We set up an international, multidisciplinary group of 26 experts to participate in a Delphi process on robotics as applied to pelvic floor reconstructive surgery. The group comprised urogynecologists, urologists, and colorectal surgeons with long-term experience in the performance of pelvic floor reconstructive procedures and with the use of the robot, who were identified primarily based on peer-reviewed publications. Two rounds of the Delphi process were conducted. The first included 63 statements pertaining to surgeons’ characteristics, general questions, indications, surgical technique, and future-oriented questions. A second round including 20 statements was used to reassess those statements where borderline agreement was obtained during the first round. The final step consisted of a face-to-face meeting with all participants to present and discuss the results of the analysis. Results: The 26 experts agreed that robotics is a suitable indication for pelvic floor reconstructive surgery because of the significant technical advantages that it confers relative to standard laparoscopy. Experts considered these advantages particularly important for the execution of complex reconstructive procedures, although the benefits can be found also during less challenging cases. The experts considered the robot safe and effective for pelvic floor reconstruction and generally thought that the additional costs are offset by the increased surgical efficacy. Conclusion: Robotics is a suitable choice for pelvic reconstruction, but t
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- 2023
4. Safety and perioperative morbidity of laparoscopic sacropexy: a systematic analysis and a comparison with laparoscopic hysterectomy
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Joukhadar, R., Baum, S., Radosa, J., Gerlinger, C., Hamza, A., Juhasz-Böss, I., and Solomayer, E.-F.
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- 2017
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5. Introduction of basic obstetrical ultrasound screening in undergraduate medical education
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Hamza, A., Solomayer, E. -F., Takacs, Z., Juhasz-Boes, I., Joukhadar, R., Radosa, J. C., Mavrova, R., Marc, W., Volk, T., and Meyberg-Solomayer, G.
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- 2016
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6. Vorstellung des Designs einer prospektiven, multizentrischen Studie zur robotischen Sakropexie in der Therapie komplexer Beckenbodendefekte aller drei Kompartimente mit Vergleich der robotischen Implementierungs- vs. Konsolidierungsphase und deren Einfluss auf Patienten-bezogene Ergebnisvariablen
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Mothes, AR, Gabriel, B, Denschlag, D, Joukhadar, R, Runnebaum, IB, Mothes, AR, Gabriel, B, Denschlag, D, Joukhadar, R, and Runnebaum, IB
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- 2022
7. Genome-wide association mapping for five major pest resistances in wheat
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Joukhadar, R., El-Bouhssini, M., Jighly, A., and Ogbonnaya, F. C.
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- 2013
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8. P–350 Utilizing indocyanine green (ICG)-enhanced fluorescence to localize the ureter during robotic surgery for DIE and a concomitant crossed renal ectopia
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Joukhadar, R, primary, Woeckel, A, additional, Altides, A, additional, and Balafoutas, D, additional
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- 2021
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9. Die Wertigkeit von plazentaren Biomarker zur Prädiktion des postpartalen Verlaufes bei Präeklampsie
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Hamza, A, additional, Solomayer, EF, additional, Hagmann, J, additional, Takacs, Z, additional, Radosa, J, additional, Meyberg-Solomayer, G, additional, Joukhadar, R, additional, and Kasoha, M, additional
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- 2017
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10. Die Wertigkeit von sFlt-1 und PlGF zur Prädiktion des postpartalen Verlaufes bei Präeklampsie
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Hamza, A, additional, Solomayer, EF, additional, Hagmann, J, additional, Takacs, Z, additional, Radosa, J, additional, Meyberg-Solomayer, G, additional, Joukhadar, R, additional, and Kasoha, M, additional
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- 2017
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11. What Are the Advantages of 3D Cameras in Gynaecological Laparoscopy?
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Baum, S., additional, Sillem, M., additional, Ney, J., additional, Baum, A., additional, Friedrich, M., additional, Radosa, J., additional, Kramer, K., additional, Gronwald, B., additional, Gottschling, S., additional, Solomayer, E., additional, Rody, A., additional, and Joukhadar, R., additional
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- 2017
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12. Development of an online platform for registration and outcome measurement of urogynecological implants according to IDEAL-system
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Barski, D., primary, Gerullis, H., additional, Ecke, T., additional, Joukhadar, R., additional, Kranz, J., additional, Tahbaz, R., additional, Queissert, F., additional, Schneidewind, L., additional, Mühlstädt, S., additional, Grabbert, M., additional, Huppertz, N., additional, Pelzer, A.E., additional, Klinge, U., additional, Boros, M., additional, Bader, W., additional, Puppe, F., additional, and Otto, T., additional
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- 2016
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13. Safety and perioperative morbidity of laparoscopic sacropexy: a systematic analysis and a comparison with laparoscopic hysterectomy
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Joukhadar, R., primary, Baum, S., additional, Radosa, J., additional, Gerlinger, C., additional, Hamza, A., additional, Juhasz-Böss, I., additional, and Solomayer, E.-F., additional
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- 2016
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14. Sicherheit und Outcome von netzgestützten urogynäkologischen Eingriffen im hohen Alter
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Joukhadar, R, primary, Baum, S, additional, Solomayer, EF, additional, Radosa, J, additional, Paulus, V, additional, Bettin, S, additional, Rhein, D, additional, Pauli, F, additional, and Wöckel, A, additional
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- 2016
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15. Darstellung und laparoskopische Behandlung einer vesicovaginalen Fistel in zwei Fallbeispielen
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Joukhadar, R, primary, Wulff, C, additional, Solomayer, E, additional, Hamza, A, additional, and Baum, S, additional
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- 2016
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16. Diagnose und Management des retroflexio uteri gravidi mit akutem Harnverhalt in der Schwangerschaft in einer Fallserie von 6 Fällen
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Joukhadar, R, primary, Herr, D, additional, Hamza, A, additional, Meyberg-Solomayer, G, additional, Takacs, Z, additional, and Baum, S, additional
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- 2016
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17. Implementierung und Validierung eines postoperativen Schmerzprotokolls für laparoskopische Eingriffe
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Stotz, L, primary, Schweitzer, PA, additional, Hamza, A, additional, Joukhadar, R, additional, Juhasz-Böss, I, additional, Solomayer, EF, additional, Radosa, MP, additional, and Radosa, JC, additional
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- 2016
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18. Diagnostic Methods of Ectopic Pregnancy and Early Pregnancy Loss: a Review of the Literature
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Hamza, A., additional, Meyberg-Solomayer, G., additional, Juhasz-Böss, I., additional, Joukhadar, R., additional, Takacs, Z., additional, Solomayer, E.-F., additional, Baum, S., additional, Radosa, J., additional, Mavrova, L., additional, and Herr, D., additional
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- 2016
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19. Influence of the Preoperative Decision-Making Process on the Postoperative Outcome after Hysterectomy for Benign Uterine Pathologies
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Radosa, J., additional, Radosa, C., additional, Kastl, C., additional, Mavrova, R., additional, Gabriel, L., additional, Gräber, S., additional, Wagenpfeil, G., additional, Baum, S., additional, Hamza, A., additional, Joukhadar, R., additional, Juhasz-Böss, I., additional, Heimes, A.-S., additional, Meyberg-Solomayer, G., additional, Solomayer, E.-F., additional, and Radosa, M., additional
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- 2016
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20. Challenges of Longevity: Safety of Vaginal and Laparoscopic Urogynecological Procedures in Septuagenarians and Older Patients
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Joukhadar, R., primary, Wöckel, A., additional, Herr, D., additional, Paulus, V., additional, Radosa, J., additional, Hamza, A., additional, Solomayer, E., additional, and Baum, S., additional
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- 2016
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21. Einführung eines praktischen standardisierten Ultraschallkurses in der Medizinlehre
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Hamza, A, primary, Solomayer, EF, additional, Takacs, Z, additional, Juhasz-Boess, I, additional, Joukhadar, R, additional, Baum, S, additional, Radosa, J, additional, Mavrova, R, additional, Von Heesen, A, additional, Wagenpfeil, S, additional, and Meyberg-Solomayer, G, additional
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- 2015
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22. Deciding Factors for the Referral of a Female Patient to a Specific Hospital from the Viewpoint of Practice-Based Specialists
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Baum, S., additional, Meyberg-Solomayer, G., additional, Baum, A., additional, Radosa, J., additional, Hamza, A., additional, Gronwald, B., additional, Friedrich, M., additional, Solomayer, E., additional, and Joukhadar, R., additional
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- 2015
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23. Welche Vorteile bringt der Einsatz von 3-D-Kameras in der gynäkologischen Laparoskopie?
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Baum, S., Sillem, M., Ney, J. T., Baum, A., Friedrich, M., Radosa, J., Kramer, K. M., Gronwald, B., Gottschling, S., Solomayer, E. F., Rody, A., and Joukhadar, R.
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- 2017
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24. Zeigen HER2+ Mammakarzinome ein anderes Metastasierungsmuster im Vergleich zu HER2- Karzinomen?
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Baum, S, primary, Radosa, J, additional, Hamza, A, additional, Friedrich, M, additional, Solomayer, E, additional, and Joukhadar, R, additional
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- 2014
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25. Vergleich zweier Methoden zur Anlage eines Pneumoperitoneums bei gynäkologischen laparoskopischen Eingriffen
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Sklavounos, P, primary, Radosa, JC, additional, Joukhadar, R, additional, Hamza, A, additional, Solomayer, EF, additional, and Baum, S, additional
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- 2014
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26. Verwendung von Indocyaningrün zur Markierung von Wächterlymphknoten beim Zervix-, Endometrium- und Vulvakarzinom
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Baum, S, primary, Radosa, J, additional, Sklavounos, P, additional, Solomayer, E, additional, and Joukhadar, R, additional
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- 2014
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27. Influence of loop conization on patients' postoperative sexual function and quality of life
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Radosa, JC, primary, Nau, J, additional, Russalina, M, additional, Joukhadar, R, additional, Hamza, A, additional, Juhasz-Böss, I, additional, Baum, S, additional, and Solomayer, EF, additional
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- 2014
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28. Influence of laparoscopic myomectomy on patients' postoperative sexual function and quality of life
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Radosa, J, primary, Radosa, MP, additional, Kastl, C, additional, Baum, S, additional, Joukhadar, R, additional, Hamza, A, additional, Juhasz-Böss, I, additional, and Solomayer, EF, additional
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- 2014
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29. Microsatellites grant more stable flanking genes
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Joukhadar Reem and Jighly Abdulqader
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Microsatellite ,Polymerase Chain Reaction (PCR) ,Polymerase slippage ,Transformation ,Medicine ,Biology (General) ,QH301-705.5 ,Science (General) ,Q1-390 - Abstract
Abstract Background Microsatellites, or simple sequence repeats (SSRs), are DNA sequences that include tandem copies of specific sequences no longer than six bases. SSRs are ubiquitous in all genomes and highly mutable. Presentation of the hypothesis Results from previous studies suggest that flanking regions of SSR are exhibit high stability in a wide range of organisms. We hypothesized that the SSRs ability to discard weak DNA polymerases could be responsible for this unusual stability. . When the weak polymerases are being decayed over SSRs, the flanking sequences would have higher opportunity to be replicated by more stable DNA polymerases. We present evidence of the molecular basis of our hypothesis. Testing the hypothesis The hypothesis could be tested by examining the activity of DNA polymerase during and after a number of PCRs. The PCR reactions should be run with the same SSR locus possessing differences in the SSR length. The hypothesis could also be tested by comparing the mutational rate of a transferred gene between two transformations. The first one has a naked T-DNA (transferred DNA), while the second one has the same T-DNA flanked with two SSRs. Implications of the hypothesis In any transformation experiment, flanking the T-DNA fragment with SSR sequences would result in more stably transferred genes. This process would decrease the unpredictable risks that may occur because of the mutational pressure on this foreign segment.
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- 2012
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30. Durum wheat genome highlights past domestication signatures and future improvement targets
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Ron MacLachlan, Elisabetta Frascaroli, Nils Stein, Matteo Gnocchi, Sven Twardziok, Heidrun Gundlach, Daniela Marone, Arthur T. O. Melo, Marco Moscatelli, Gabriella Sonnante, Steven S. Xu, Roberto Tuberosa, Silvio Salvi, Sean Walkowiak, Raz Avni, Axel Himmelbach, E. Mica, Reem Joukhadar, Raj K. Pasam, Jasline Deek, Marco Maccaferri, Andrew G. Sharpe, Domenica Nigro, Aldo Ceriotti, Sezgi Biyiklioglu, Ron Knox, Paolo Cozzi, Curtis J. Pozniak, Gregory J. Taylor, Kevin Y. H. Liang, Caterina Marè, Hakan Özkan, Nicola Pecchioni, Anna M. Mastrangelo, Verena M. Prade, Alessandra Stella, Sara Giulia Milner, Martin Mascher, Iago Hale, Luigi Cattivelli, Krystalee Wiebe, Shiaoman Chao, Elisabetta Mazzucotelli, Klaus F. X. Mayer, Michael O. Pumphrey, Agata Gadaleta, Jennifer Ens, Pasquale De Vita, Assaf Distelfeld, Thomas Lux, Cristina Crosatti, Massimiliano Lauria, Chu Shin Koh, Luciano Milanesi, Neil S. Harris, Barbara Lazzari, Simona Corneti, Matthew J. Hayden, Paolo Bagnaresi, Benjamin Kilian, Justin D. Faris, John M. Clarke, Andrea Manconi, Manuel Spannagl, Francesca Desiderio, Primetta Faccioli, Danara Ormanbekova, Hikmet Budak, Çukurova Üniversitesi, Maccaferri M., Harris N.S., Twardziok S.O., Pasam R.K., Gundlach H., Spannagl M., Ormanbekova D., Lux T., Prade V.M., Milner S.G., Himmelbach A., Mascher M., Bagnaresi P., Faccioli P., Cozzi P., Lauria M., Lazzari B., Stella A., Manconi A., Gnocchi M., Moscatelli M., Avni R., Deek J., Biyiklioglu S., Frascaroli E., Corneti S., Salvi S., Sonnante G., Desiderio F., Mare C., Crosatti C., Mica E., Ozkan H., Kilian B., De Vita P., Marone D., Joukhadar R., Mazzucotelli E., Nigro D., Gadaleta A., Chao S., Faris J.D., Melo A.T.O., Pumphrey M., Pecchioni N., Milanesi L., Wiebe K., Ens J., MacLachlan R.P., Clarke J.M., Sharpe A.G., Koh C.S., Liang K.Y.H., Taylor G.J., Knox R., Budak H., Mastrangelo A.M., Xu S.S., Stein N., Hale I., Distelfeld A., Hayden M.J., Tuberosa R., Walkowiak S., Mayer K.F.X., Ceriotti A., Pozniak C.J., and Cattivelli L.
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Adenosine Triphosphatase ,Triticum turgidum ssp. durum ,Quantitative Trait Loci ,Locus (genetics) ,Biology ,Genome ,Polymorphism, Single Nucleotide ,Synteny ,Chromosomes, Plant ,Chromosomes ,Domestication ,03 medical and health sciences ,0302 clinical medicine ,Adenosine Triphosphatases ,Cadmium ,Genetic Variation ,Genome, Plant ,Phylogeny ,Plant Breeding ,Plant Proteins ,Selection, Genetic ,Tetraploidy ,Triticum ,Genetic ,Genetic variation ,Genetics ,Plant breeding ,Polymorphism ,Selection ,030304 developmental biology ,2. Zero hunger ,0303 health sciences ,Genetic diversity ,cadmium accumulation ,Plant Protein ,food and beverages ,Plant ,Single Nucleotide ,ddc ,Genetic divergence ,genome sequencing ,030217 neurology & neurosurgery - Abstract
PubMedID: 30962619 The domestication of wild emmer wheat led to the selection of modern durum wheat, grown mainly for pasta production. We describe the 10.45 gigabase (Gb) assembly of the genome of durum wheat cultivar Svevo. The assembly enabled genome-wide genetic diversity analyses revealing the changes imposed by thousands of years of empirical selection and breeding. Regions exhibiting strong signatures of genetic divergence associated with domestication and breeding were widespread in the genome with several major diversity losses in the pericentromeric regions. A locus on chromosome 5B carries a gene encoding a metal transporter (TdHMA3-B1) with a non-functional variant causing high accumulation of cadmium in grain. The high-cadmium allele, widespread among durum cultivars but undetected in wild emmer accessions, increased in frequency from domesticated emmer to modern durum wheat. The rapid cloning of TdHMA3-B1 rescues a wild beneficial allele and demonstrates the practical use of the Svevo genome for wheat improvement. © 2019, The Author(s), under exclusive licence to Springer Nature America, Inc. Western Grains Research Foundation Ministry of Agriculture - Saskatchewan Israel Science Foundation: 1137/17 031A536 FP7 Food, Agriculture and Fisheries, Biotechnology: DROPS ID244347 Natural Sciences and Engineering Research Council of Canada InterOmics PB05 Genome Prairie United States-Israel Binational Science Foundation: 2015409 Genome Canada Saskatchewan Canola Development Commission 2819103915 PIR01_00017 3060-21000-038-00-D We acknowledge the funding support of: the Italian Ministry of Education and Research with projects CNR Flagship InterOmics PB05 (L.M., A.C., G.S.), PON ELIXIR CNR-BiOmics PIR01_00017 (L.M., M.G., M.Mo.) and PON ISCOCEM (P.D.); CREA project Interomics (L.C.); Fondazione in rete per la ricerca agroalimentare AGER project From Seed to Pasta (R.T.); FP7-KBBE Project DROPS ID244347 (R.T.); Genome Canada (A.G.S., C.P.); the Western Grain Research Foundation (A.G.S., C.P.); the Manitoba Wheat and Barley Commission (A.G.S., C.P.); the Saskatchewan Wheat Development Commission (A.G.S., C.P.); the Alberta Wheat Development Commission (A.G.S., C.P.); the Saskatchewan Ministry of Agriculture (A.G.S., C.P.); the administrative support of Genome Prairie (A.G.S., C.P.); Canadian Triticum Applied Genomics -CTAG2-(A.G.S., C.P.); Binational Science Foundation grant no. 2015409 (I.H., A.D.); Israel Science Foundation grant no. 1137/17 (A.D.); USDA-Agricultural Research Service Current Research Information System project 3060-21000-038-00-D (J.D.F., S.S.X.); German Federal Ministry of Food and Agriculture grant no. 2819103915 (N.S., K.F.X.M.); German Ministry of Education and Research grant no. 031A536 (K.F.X.M.); and Natural Sciences and Engineering Council of Canada grant nos. SPG 336119-06 and RGPIN 92787 (G.J.T., C.P.). The authors are grateful to E. Elias (North Dakota State University) for providing nine DW cultivars, included in the Global Tetraploid Wheat Collection and E. Scarpella (University of Alberta, Edmonton, Canada) for assistance with confocal microscopy.
- Published
- 2019
31. Functional Nanostructured Lipid Carrier-Enriched Hydrogels Tailored to Repair Damaged Epidermal Barrier.
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Joukhadar R, Nižić Nodilo L, Lovrić J, Hafner A, Pepić I, and Jug M
- Abstract
In this study, a functional nanostructured lipid carriers (NLCs)-based hydrogel was developed to repair the damaged epidermal skin barrier. NLCs were prepared via a high-energy approach, using argan oil and beeswax as liquid and solid lipids, respectively, and were loaded with ceramides and cholesterol at a physiologically relevant ratio, acting as structural and functional compounds. Employing a series of surfactants and optimizing the preparation conditions, NLCs of 215.5 ± 0.9 nm in size and a negative zeta potential of -42.7 ± 0.9 were obtained, showing acceptable physical and microbial stability. Solid state characterization by differential scanning calorimetry and X-ray powder diffraction revealed the formation of imperfect crystal NLC-type. The optimized NLC dispersion was loaded into the gel based on sodium hyaluronate and xanthan gum. The gels obtained presented a shear thinning and thixotropic behavior, which is suitable for dermal application. Incorporating NLCs enhanced the rheological, viscoelastic, and textural properties of the gel formed while retaining the suitable spreadability required for comfortable application and patient compliance. The NLC-loaded gel presented a noticeable occlusion effect in vitro. It provided 2.8-fold higher skin hydration levels on the ex vivo porcine ear model than the NLC-free gel, showing a potential to repair the damaged epidermal barrier and nourish the skin actively.
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- 2024
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32. Optimising desired gain indices to maximise selection response.
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Joukhadar R, Li Y, Thistlethwaite R, Forrest KL, Tibbits JF, Trethowan R, and Hayden MJ
- Abstract
Introduction: In plant breeding, we often aim to improve multiple traits at once. However, without knowing the economic value of each trait, it is hard to decide which traits to focus on. This is where "desired gain selection indices" come in handy, which can yield optimal gains in each trait based on the breeder's prioritisation of desired improvements when economic weights are not available. However, they lack the ability to maximise the selection response and determine the correlation between the index and net genetic merit., Methods: Here, we report the development of an iterative desired gain selection index method that optimises the sampling of the desired gain values to achieve a targeted or a user-specified selection response for multiple traits. This targeted selection response can be constrained or unconstrained for either a subset or all the studied traits., Results: We tested the method using genomic estimated breeding values (GEBVs) for seven traits in a bread wheat ( Triticum aestivum ) reference breeding population comprising 3,331 lines and achieved prediction accuracies ranging between 0.29 and 0.47 across the seven traits. The indices were validated using 3,005 double haploid lines that were derived from crosses between parents selected from the reference population. We tested three user-specified response scenarios: a constrained equal weight (INDEX1), a constrained yield dominant weight (INDEX2), and an unconstrained weight (INDEX3). Our method achieved an equivalent response to the user-specified selection response when constraining a set of traits, and this response was much better than the response of the traditional desired gain selection indices method without iteration. Interestingly, when using unconstrained weight, our iterative method maximised the selection response and shifted the average GEBVs of the selection candidates towards the desired direction., Discussion: Our results show that the method is an optimal choice not only when economic weights are unavailable, but also when constraining the selection response is an unfavourable option., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The authors declare that this study received funding from Grains Research and Development Corporation. The funder was not involved in the study design, collection, analysis, interpretation of data, the writing of this article or the decision to submit it for publication., (Copyright © 2024 Joukhadar, Li, Thistlethwaite, Forrest, Tibbits, Trethowan and Hayden.)
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- 2024
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33. Identification of novel genes associated with herbicide tolerance in Lentil (Lens culinaris ssp. culinaris Medik.).
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Balech R, Maalouf F, Kaur S, Jighly A, Joukhadar R, Alsamman AM, Hamwieh A, Khater LA, Rubiales D, and Kumar S
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- Genome-Wide Association Study, Genes, Plant, Quantitative Trait Loci, Lens Plant genetics, Lens Plant drug effects, Lens Plant growth & development, Herbicides pharmacology, Herbicides toxicity, Polymorphism, Single Nucleotide, Herbicide Resistance genetics
- Abstract
Weeds pose a major constraint in lentil cultivation, leading to decrease farmers' revenues by reducing the yield and increasing the management costs. The development of herbicide tolerant cultivars is essential to increase lentil yield. Even though herbicide tolerant lines have been identified in lentils, breeding efforts are still limited and lack proper validation. Marker assisted selection (MAS) can increase selection accuracy at early generations. Total 292 lentil accessions were evaluated under different dosages of two herbicides, metribuzin and imazethapyr, during two seasons at Marchouch, Morocco and Terbol, Lebanon. Highly significant differences among accessions were observed for days to flowering (DF) and maturity (DM), plant height (PH), biological yield (BY), seed yield (SY), number of pods per plant (NP), as well as the reduction indices (RI) for PH, BY, SY and NP. A total of 10,271 SNPs markers uniformly distributed along the lentil genome were assayed using Multispecies Pulse SNP chip developed at Agriculture Victoria, Melbourne. Meta-GWAS analysis was used to detect marker-trait associations, which detected 125 SNPs markers associated with different traits and clustered in 85 unique quantitative trait loci. These findings provide valuable insights for initiating MAS programs aiming to enhance herbicide tolerance in lentil crop., (© 2024. The Author(s).)
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- 2024
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34. Robot-assisted pelvic floor reconstructive surgery: an international Delphi study of expert users.
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Simoncini T, Panattoni A, Aktas M, Ampe J, Betschart C, Bloemendaal ALA, Buse S, Campagna G, Caretto M, Cervigni M, Consten ECJ, Davila HH, Dubuisson J, Espin-Basany E, Fabiani B, Faucheron JL, Giannini A, Gurland B, Hahnloser D, Joukhadar R, Mannella P, Mereu L, Martellucci J, Meurette G, Montt Guevara MM, Ratto C, O'Reilly BA, Reisenauer C, Russo E, Schraffordt Koops S, Siddiqi S, Sturiale A, and Naldini G
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- Humans, Pelvic Floor surgery, Delphi Technique, Robotics, Surgery, Plastic, Robotic Surgical Procedures methods, Laparoscopy methods
- Abstract
Background: Robotic surgery has gained popularity for the reconstruction of pelvic floor defects. Nonetheless, there is no evidence that robot-assisted reconstructive surgery is either appropriate or superior to standard laparoscopy for the performance of pelvic floor reconstructive procedures or that it is sustainable. The aim of this project was to address the proper role of robotic pelvic floor reconstructive procedures using expert opinion., Methods: We set up an international, multidisciplinary group of 26 experts to participate in a Delphi process on robotics as applied to pelvic floor reconstructive surgery. The group comprised urogynecologists, urologists, and colorectal surgeons with long-term experience in the performance of pelvic floor reconstructive procedures and with the use of the robot, who were identified primarily based on peer-reviewed publications. Two rounds of the Delphi process were conducted. The first included 63 statements pertaining to surgeons' characteristics, general questions, indications, surgical technique, and future-oriented questions. A second round including 20 statements was used to reassess those statements where borderline agreement was obtained during the first round. The final step consisted of a face-to-face meeting with all participants to present and discuss the results of the analysis., Results: The 26 experts agreed that robotics is a suitable indication for pelvic floor reconstructive surgery because of the significant technical advantages that it confers relative to standard laparoscopy. Experts considered these advantages particularly important for the execution of complex reconstructive procedures, although the benefits can be found also during less challenging cases. The experts considered the robot safe and effective for pelvic floor reconstruction and generally thought that the additional costs are offset by the increased surgical efficacy., Conclusion: Robotics is a suitable choice for pelvic reconstruction, but this Delphi initiative calls for more research to objectively assess the specific settings where robotic surgery would provide the most benefit., (© 2023. The Author(s).)
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- 2023
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35. Predictors of Decreased Quality of Life in Breast Cancer Survivors Five Years After Diagnosis.
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Herbert SL, Flock F, Felberbaum R, Janni W, Löb S, Kiesel M, Schlaiß T, Diessner J, Curtaz C, Joukhadar R, Dayan D, Schwentner L, Singer S, and Wöckel A
- Abstract
Purpose: Due to improved therapy, early diagnosis, and growing incidence rates, the number of long-term breast cancer survivors is increasing. Survivors can still be affected by aftercare, resulting in reduced quality of life (QoL). Thus, in this study, we investigated possible predictors of decreased physical and social functioning in breast cancer survivors., Methods: In a German multicenter prospective study, we enrolled 759 female patients with breast cancer before surgery (t1), and contacted them again 5 years after surgery (t4). Data on QoL were assessed at t4 using the European Organization for Research and Treatment of Cancer QoL Core Questionnaire (EORTC QLQ-C30) and its breast cancer module EORTC QLQ-BR23. Predictors of decreased physical and social functioning were analyzed using logistic regression with odds ratios as effect estimates and 95% confidence intervals. Thresholds for the clinical importance of detrimental effects on QoL were defined according to Giesinger., Results: Questionnaires from 759 patients were retrieved at t1. Of these, 456 participated in the study at t4. Poor QoL 5 years after diagnosis was reported by 20%-50% of the participants. Age, mastectomy, chemotherapy, education, employment, cohabitation, psychiatric comorbidities at t1, anxiety, depression, and intensity of physical activity emerged as predictors of decreased physical and social functioning 5 years after diagnosis., Conclusion: Relief of symptoms and improvement in the QoL should be priorities in aftercare. Detecting patients with a decreased QoL is a rising challenge. Healthcare providers should take special care of patients aged 50-59 years, patients with psychiatric comorbidities and depression, and patients who have undergone mastectomy., Competing Interests: Prof. Singer has received speaker honorarium from Company Lilly and Pfizer. PD Dr. med. Schlaiß has received honorarium from Company Roche, Pfizer, AstraZeneca, Novartis and travel expenses from Celgene. Dr. med. Curtaz joined a mentee program from Novartis and Besins Health., (© 2023 Korean Breast Cancer Society.)
- Published
- 2023
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36. A 3D printed model of the female pelvis for practical education of gynecological pelvic examination.
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Kiesel M, Beyers I, Kalisz A, Joukhadar R, Wöckel A, Herbert SL, Curtaz C, and Wulff C
- Abstract
Background: Pelvic palpation is a core component of every Gynecologic examination. It requires vigorous training, which is difficult due to its intimate nature, leading to a need of simulation. Up until now, there are mainly models available for mere palpation which do not offer adequate visualization of the concerning anatomical structures. In this study we present a 3D printed model of the female pelvis. It can improve both the practical teaching of gynecological pelvic examination for health care professionals and the spatial understanding of the relevant anatomy., Methods: We developed a virtual, simplified model showing selected parts of the female pelvis. 3D printing was used to create a physical model., Results: The life-size 3D printed model has the ability of being physically assembled step by step by its users. Consequently, it improves teaching especially when combining it with commercial phantoms, which are built solely for palpation training. This is achieved by correlating haptic and visual sensations with the resulting feedback received., Conclusion: The presented 3D printed model of the female pelvis can be of aid for visualizing and teaching pelvic anatomy and examination to medical staff. 3D printing provides the possibility of creating, multiplying, adapting and sharing such data worldwide with little investment of resources. Thus, an important contribution to the international medical community can be made for training this challenging examination., (© 2022. The Author(s).)
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- 2022
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37. Introducing a novel model for simulating large loop excision of the transformation zone (LLETZ) using 3D printing technique.
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Kiesel M, Beyers I, Kalisz A, Wöckel A, Herbert SL, Curtaz C, Diessner J, Joukhadar R, and Wulff C
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- Colposcopy methods, Electrosurgery methods, Female, Humans, Pregnancy, Printing, Three-Dimensional, Uterine Cervical Dysplasia surgery, Uterine Cervical Neoplasms surgery
- Abstract
Purpose: Electrosurgery is the gold-standard procedure for the treatment of cervical dysplasia. The quality of the outcome depends on the accuracy of performance, which underlines the role of adequate training of surgeons, especially, as this procedure is often performed by novice surgeons. According to our knowledge, medical simulation has up until now lacked a model, which focuses on realistically simulating the treatment of cervical dysplasia with the concerning anatomy., Methods and Result: In our work, we present a model created using 3D printing for holistically simulating diagnostic, as well as surgical interventions of the cervix, as realistically as possible., Conclusion: This novel simulator is compared to an existing model and both are evaluated. By doing so, we aim to provide novice gynecologists with standardized and high-quality simulation models for practicing to improve their proficiency., (© 2021. The Author(s).)
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- 2022
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38. Data Integration, Imputation, and Meta-analysis for Genome-Wide Association Studies.
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Joukhadar R and Daetwyler HD
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- Genome, Genotype, Genotyping Techniques methods, Genome-Wide Association Study methods, Polymorphism, Single Nucleotide
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Growing genomic and phenotypic datasets require different groups around the world to collaborate and integrate these valuable resources to maximize their benefit and increase reference population sizes for genomic prediction and genome-wide association studies (GWAS). However, different studies use different genotyping techniques which requires a synchronizing step for the genotyped variants called "imputation" before combining them. Optimally, different GWAS datasets can be analysed within a meta-analysis, which recruits summary statistics instead of actual data. This chapter describes the general principles for genotypic imputation and meta-GWAS analysis with a description of study designs and command lines required for such analyses., (© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.)
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- 2022
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39. Genomic selection can accelerate the biofortification of spring wheat.
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Joukhadar R, Thistlethwaite R, Trethowan RM, Hayden MJ, Stangoulis J, Cu S, and Daetwyler HD
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- Chromosome Mapping methods, Quantitative Trait Loci, Biofortification methods, Chromosomes, Plant genetics, Genome, Plant, Plant Breeding, Selection, Genetic, Triticum genetics, Triticum growth & development
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Key Message: Genomic selection enabled accurate prediction for the concentration of 13 nutritional element traits in wheat. Wheat biofortification is one of the most sustainable strategies to alleviate mineral deficiency in human diets. Here, we investigated the potential of genomic selection using BayesR and Bayesian ridge regression (BRR) models to predict grain yield (YLD) and the concentration of 13 nutritional elements in grains (B, Ca, Co, Cu, Fe, K, Mg, Mn, Mo, Na, Ni, P and Zn) using a population of 1470 spring wheat lines. The lines were grown in replicated field trials with two times of sowing (TOS) at 3 locations (Narrabri-NSW, all lines; Merredin-WA and Horsham-VIC, 200 core lines). Narrow-sense heritability across environments (locations/TOS) ranged from 0.09 to 0.45. Co, K, Na and Ca showed low to negative genetic correlations with other traits including YLD, while the remaining traits were negatively correlated with YLD. When all environments were included in the reference population, medium to high prediction accuracy was observed for the different traits across environments. BayesR had higher average prediction accuracy for mineral concentrations (r = 0.55) compared to BRR (r = 0.48) across all traits and environments but both methods had comparable accuracies for YLD. We also investigated the utility of one or two locations (reference locations) to predict the remaining location(s), as well as the ability of one TOS to predict the other. Under these scenarios, BayesR and BRR showed comparable performance but with lower prediction accuracy compared to the scenario of predicting reference environments for new lines. Our study demonstrates the potential of genomic selection for enriching wheat grain with nutritional elements in biofortification breeding., (© 2021. Crown.)
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- 2021
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40. Meta-analysis of genome-wide association studies reveal common loci controlling agronomic and quality traits in a wide range of normal and heat stressed environments.
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Joukhadar R, Thistlethwaite R, Trethowan R, Keeble-Gagnère G, Hayden MJ, Ullah S, and Daetwyler HD
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- Australia, Edible Grain genetics, Edible Grain physiology, Gene-Environment Interaction, Genetic Association Studies, Genotype, Phenotype, Polymorphism, Single Nucleotide, Triticum physiology, Heat-Shock Response, Quantitative Trait Loci, Triticum genetics
- Abstract
Key Message: Several stable QTL were detected using metaGWAS analysis for different agronomic and quality traits under 26 normal and heat stressed environments. Heat stress, exacerbated by global warming, has a negative influence on wheat production worldwide and climate resilient cultivars can help mitigate these impacts. Selection decisions should therefore depend on multi-environment experiments representing a range of temperatures at critical stages of development. Here, we applied a meta-genome wide association analysis (metaGWAS) approach to detect stable QTL with significant effects across multiple environments. The metaGWAS was applied to 11 traits scored in 26 trials that were sown at optimal or late times of sowing (TOS1 and TOS2, respectively) at five locations. A total of 2571 unique wheat genotypes (13,959 genotypes across all environments) were included and the analysis conducted on TOS1, TOS2 and both times of sowing combined (TOS1&2). The germplasm was genotyped using a 90 k Infinium chip and imputed to exome sequence level, resulting in 341,195 single nucleotide polymorphisms (SNPs). The average accuracy across all imputed SNPs was high (92.4%). The three metaGWAS analyses revealed 107 QTL for the 11 traits, of which 16 were detected in all three analyses and 23 were detected in TOS1&2 only. The remaining QTL were detected in either TOS1 or TOS2 with or without TOS1&2, reflecting the complex interactions between the environments and the detected QTL. Eight QTL were associated with grain yield and seven with multiple traits. The identified QTL provide an important resource for gene enrichment and fine mapping to further understand the mechanisms of gene × environment interaction under both heat stressed and unstressed conditions.
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- 2021
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41. BRENDA-Score, a Highly Significant, Internally and Externally Validated Prognostic Marker for Metastatic Recurrence: Analysis of 10,449 Primary Breast Cancer Patients.
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Wischnewsky M, Schwentner L, Diessner JD, De Gregorio A, Joukhadar R, Davut D, Salmen J, Bekes I, Kiesel M, Müller-Reiter M, Blettner M, Wolters R, Janni W, Kreienberg R, Wöckel A, and Ebner F
- Abstract
Background Current research in breast cancer focuses on individualization of local and systemic therapies with adequate escalation or de-escalation strategies. As a result, about two-thirds of breast cancer patients can be cured, but up to one-third eventually develop metastatic disease, which is considered incurable with currently available treatment options. This underscores the importance to develop a metastatic recurrence score to escalate or de-escalate treatment strategies. Patients and methods Data from 10,499 patients were available from 17 clinical cancer registries (BRENDA-project [
1 ]. In total, 8566 were used to develop the BRENDA-Index. This index was calculated from the regression coefficients of a Cox regression model for metastasis-free survival (MFS). Based on this index, patients were categorized into very high, high, intermediate, low, and very low risk groups forming the BRENDA-Score. Bootstrapping was used for internal validation and an independent dataset of 1883 patients for external validation. The predictive accuracy was checked by Harrell's c-index. In addition, the BRENDA-Score was analyzed as a marker for overall survival (OS) and compared to the Nottingham prognostic score (NPS). Results : Intrinsic subtypes, tumour size, grading, and nodal status were identified as statistically significant prognostic factors in the multivariate analysis. The five prognostic groups of the BRENDA-Score showed highly significant ( p < 0.001) differences regarding MFS:low risk: hazard ratio (HR) = 2.4, 95%CI (1.7-3.3); intermediate risk: HR = 5.0, 95%CI.(3.6-6.9); high risk: HR = 10.3, 95%CI (7.4-14.3) and very high risk: HR = 18.1, 95%CI (13.2-24.9). The external validation showed congruent results. A multivariate Cox regression model for OS with BRENDA-Score and NPS as covariates showed that of these two scores only the BRENDA-Score is significant (BRENDA-Score p < 0.001; NPS p = 0.447). Therefore, the BRENDA-Score is also a good prognostic marker for OS. Conclusion: The BRENDA-Score is an internally and externally validated robust predictive tool for metastatic recurrence in breast cancer patients. It is based on routine parameters easily accessible in daily clinical care. In addition, the BRENDA-Score is a good prognostic marker for overall survival. Highlights: The BRENDA-Score is a highly significant predictive tool for metastatic recurrence of breast cancer patients. The BRENDA-Score is stable for at least the first five years after primary diagnosis, i.e., the sensitivities and specificities of this predicting system is rather similar to the NPI with AUCs between 0.76 and 0.81 the BRENDA-Score is a good prognostic marker for overall survival.- Published
- 2021
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42. Laparoscopic Management of a Heterotopic Pregnancy in the Tubal Stump.
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Balafoutas D, Diessner J, Kiesel M, Woeckel A, and Joukhadar R
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- Adult, Fallopian Tubes surgery, Female, Humans, Pregnancy, Salpingectomy, Laparoscopy, Pregnancy, Heterotopic diagnostic imaging, Pregnancy, Heterotopic surgery, Pregnancy, Tubal diagnostic imaging, Pregnancy, Tubal surgery
- Abstract
Study Objective: To demonstrate how a heterotopic tubal stump pregnancy can be safely managed with laparoscopy, preserving the intrauterine pregnancy., Design: Stepwise demonstration of the technique by means of a video tutorial., Setting: The management of pregnancies in the tubal stump after salpingectomy involves either a surgical intervention or systemic therapy. In case of a simultaneous intrauterine pregnancy, although the prognosis for the fetus remains good with live births in approximately 70% of the cases, the surgical management of the tubal stump pregnancy is challenging owing to the risk of bleeding from the uterine horn [1-5]. We present an effective and reproducible laparoscopic technique on the basis of a 31-year-old patient with 2 prior right fallopian tube pregnancies, which were later treated with salpingectomy. The patient is now presenting in the sixth week of gestation after transfer from 2 oocytes with a pregnancy in the tubal stump and a concomitant vital intrauterine pregnancy., Interventions: The key steps of laparoscopic surgery include (1) continuous absorbable monofilament suture on the uterine horn around the tubal stump to achieve hemostasis and exposure of the proximal part of the tube, (2) removal of ectopic pregnancy, and (3) closure of the excision site with continuous absorbable polyfilament suture. The instillation of vasoconstrictive substances and the use of electrical coagulation should be avoided., Conclusion: The demonstrated laparoscopic technique is a feasible method of removal of a tubal stump pregnancy without interfering with the vital intrauterine pregnancy. The blood loss can be minimized, and laparotomy can be avoided., (Copyright © 2020 AAGL. Published by Elsevier Inc. All rights reserved.)
- Published
- 2021
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43. Implementation of robotic gynecological surgery in a German University Hospital: patient safety after 110 procedures.
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Balafoutas D, Wöckel A, Wulff C, and Joukhadar R
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- Adult, Aged, Endometriosis surgery, Female, Germany, Hospitals, Humans, Hysterectomy methods, Middle Aged, Outcome Assessment, Health Care, Polyvinyls, Postoperative Complications etiology, Retrospective Studies, Salpingectomy methods, Genital Diseases, Female surgery, Gynecologic Surgical Procedures methods, Patient Safety, Robotic Surgical Procedures methods
- Abstract
Purpose: Robotic surgery represents the latest development in the field of minimally invasive surgery and offers many technical advantages. Despite the higher costs, this novel approach has been applied increasingly in gynecological surgery. Regarding the implementation of a new operative method; however, the most important factor to be aware of is patient safety. In this study, we describe our experience in implementing robotic surgery in a German University Hospital focusing on patient safety after 110 procedures., Methods: We performed a retrospective analysis of 110 consecutive robotic procedures performed in the University Hospital of Würzburg between June 2017 and September 2019. During this time, 37 patients were treated for benign general gynecological conditions, 27 patients for gynecological malignancies, and 46 patients for urogynecological conditions. We evaluated patient safety through standardized assessment of intra- and postoperative complications, which were categorized according to the Clavien-Dindo classification., Results: No complications were recorded in 90 (81.8%) operations. We observed Clavien-Dindo grade I complications in 8 (7.3%) cases, grade II complications in 5 (4.5%) cases, grade IIIa complications in 1 case (0.9%), and grade IIIb complications in 6 (5.5%) cases. No conversion to laparotomy or blood transfusion was needed., Conclusion: Robotic surgery could be implemented for complex gynecological operations without relevant problems and was accompanied by low complication rates.
- Published
- 2020
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44. Genome-wide association reveals a complex architecture for rust resistance in 2300 worldwide bread wheat accessions screened under various Australian conditions.
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Joukhadar R, Hollaway G, Shi F, Kant S, Forrest K, Wong D, Petkowski J, Pasam R, Tibbits J, Bariana H, Bansal U, Spangenberg G, Daetwyler H, Gendall T, and Hayden M
- Subjects
- Australia, Basidiomycota pathogenicity, Chromosome Mapping, Crosses, Genetic, Genetic Association Studies, Linkage Disequilibrium, Phenotype, Plant Diseases microbiology, Quantitative Trait Loci, Triticum microbiology, Disease Resistance genetics, Environment, Genetics, Population, Plant Diseases genetics, Triticum genetics
- Abstract
We utilized 2300 wheat accessions including worldwide landraces, cultivars and primary synthetic-derived germplasm with three Australian cultivars: Annuello, Yitpi and Correll, to investigate field-based resistance to leaf (Lr) rust, stem (Sr) rust and stripe (Yr) rust diseases across a range of Australian wheat agri-production zones. Generally, the resistance in the modern Australian cultivars, synthetic derivatives, South and North American materials outperformed other geographical subpopulations. Different environments for each trait showed significant correlations, with average r values of 0.53, 0.23 and 0.66 for Lr, Sr and Yr, respectively. Single-trait genome-wide association studies (GWAS) revealed several environment-specific and multi-environment quantitative trait loci (QTL). Multi-trait GWAS confirmed a cluster of Yr QTL on chromosome 3B within a 4.4-cM region. Linkage disequilibrium and comparative mapping showed that at least three Yr QTL exist within the 3B cluster including the durable rust resistance gene Yr30. An Sr/Lr QTL on chromosome 3D was found mainly in the synthetic-derived germplasm from Annuello background which is known to carry the Agropyron elongatum 3D translocation involving the Sr24/Lr24 resistance locus. Interestingly, estimating the SNP effects using a BayesR method showed that the correlation among the highest 1% of QTL effects across environments (excluding GWAS QTL) had significant correlations, with average r values of 0.26, 0.16 and 0.55 for Lr, Sr and Yr, respectively. These results indicate the importance of small effect QTL in achieving durable rust resistance which can be captured using genomic selection.
- Published
- 2020
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45. Population-dependent reproducible deviation from natural bread wheat genome in synthetic hexaploid wheat.
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Jighly A, Joukhadar R, Sehgal D, Singh S, Ogbonnaya FC, and Daetwyler HD
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- Bread, Chromosomes, Plant, Genetic Variation, Genetics, Population, Genome-Wide Association Study, Phylogeny, Polyploidy, Genome, Plant, Triticum genetics
- Abstract
Sequence elimination is one of the main mechanisms that increases the divergence among homoeologous chromosomes after allopolyploidization to enhance the stability of recently established lineages, but it can cause a loss of some economically important genes. Synthetic hexaploid wheat (SHW) is an important source of genetic variation to the natural hexaploid wheat (NHW) genepool that has low genetic diversity. Here, we investigated the change between SHW and NHW genomes by utilizing a large germplasm set of primary synthetics and synthetic derivatives. Reproducible segment elimination (RSE) was declared if a large chromosomal chunk (>5 cM) produced no aligned reads in more than five SHWs. RSE in five genomic regions was the major source of variation between SHW and NHW. One RSE eliminated almost the complete short arm of chromosome 1B, which contains major genes for flour quality, disease resistance and different enzymes. The occurrence of RSE was highly dependent on the choice of diploid and tetraploid parental lines, their ancestral subpopulation and admixture, e.g. SHWs derived from Triticum dicoccon or from one of two Aegilops tauschii subpopulations were almost free of RSE, while highly admixed parents had higher RSE rates. The rate of RSE in synthetic derivatives was almost double that in primary synthetics. Genome-wide association analysis detected four loci with minor effects on the occurrence of RSE, indicating that both parental lines and genetic factors were affecting the occurrence of RSE. Therefore, pre-pre-breeding strategies should be applied before introducing SHW into pre-breeding programs to ensure genomic stability and avoid undesirable gene loss., (© 2019 The Authors The Plant Journal © 2019 John Wiley & Sons Ltd.)
- Published
- 2019
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46. Influence of Patient's Age on the Outcome of Vaginal and Laparoscopic Procedures in Urogynaecology.
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Joukhadar R, Radosa J, Paulus V, Hamza A, Solomayer EF, Herr D, Wöckel A, and Baum S
- Abstract
Introduction In the treatment of prolapse and incontinence, the choice of surgical procedure often depends not only on the clinical findings but also on the age of the patient. Uncertainty exists at present regarding the effect of patient age on treatment outcomes for both vaginal and laparoscopic procedures. The aim of this study is therefore to compare both the anatomical outcome after prolapse surgery and the functional outcome after incontinence surgery in the context of the treatment of stress urinary incontinence in older and younger patients. Patients/Methods This is a retrospective single-centre study conducted at a university site. Over the study period, a total of 407 women underwent surgery, 278 of whom were < 70 and 129 ≥ 70 years of age. They were assigned to one of three treatment groups (prolapse surgery, incontinence surgery or a combination of both types of surgery) and were then subjected to statistical analysis after assessment of the anatomical and functional outcome after 3 - 6 months. Results The most common form of prolapse among the 407 evaluated patients was in the anterior and middle compartment, with a higher degree of severity being diagnosed in the older patients. Grade 4 prolapse according to the Baden-Walker system was thus present in the anterior compartment in 15.6 vs. 28.8% (p = 0.033) and in the middle compartment in 5.7 vs. 23.7% (p < 0.001) of cases. Younger women underwent vaginal mesh implantation less frequently and laparoscopic sacropexy more frequently for this overall. The proportion of cases of combined prolapse and incontinence surgery was the same in both groups. Overall, high success rates were observed in both younger and older patients following prolapse and incontinence surgery. These rates were 93.5 vs. 84.8% (p = 0.204) after prolapse surgery and 92.8 vs. 84.2% (p = 0.261) after incontinence surgery. A significant disadvantage for the older patients was the persistence of stress urinary incontinence after prolapse surgery alone (19.6 vs. 50%, p = 0.030) and the rate of occult (de novo) stress urinary incontinence (7.4 vs. 20%, p = 0.030). Conclusion Our data show that both pelvic organ prolapse and stress urinary incontinence can be treated with surgery with good results in women aged ≥ 70 years. It was thus possible to show for the first time in a large patient population that older women should not be denied appropriate surgery but can be offered the same range of surgical options as younger patients.
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- 2019
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47. Artificial selection causes significant linkage disequilibrium among multiple unlinked genes in Australian wheat.
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Joukhadar R, Daetwyler HD, Gendall AR, and Hayden MJ
- Abstract
Australia has one of the oldest modern wheat breeding programs worldwide although the crop was first introduced to the country in 1788. Breeders selected wheat with high adaptation to different Australian climates, while ensuring satisfactory yield and quality. This artificial selection left distinct genomic signatures that can be used to retrospectively understand breeding targets, and to detect economically important alleles. To study the effect of artificial selection on modern cultivars and cultivars released in different Australian states, we genotyped 482 Australian cultivars representing the history of wheat breeding in Australia since 1840. Computer simulation showed that 86 genomic regions were significantly affected by artificial selection. Characterization of 18 major genes known to affect wheat adaptation, yield, and quality revealed that many were affected by artificial selection and contained within regions under selection. Similarly, many reported QTL and genes for yield, quality, and adaptation were also contained in regions affected by artificial selection. These included TaCwi-A1, TaGw2-6A, Sus-2B, TaSus1-7A, TaSAP1-7A, Glu-A1, Glu-B1, Glu-B3, PinA, PinB, Ppo-D1, Psy-A1, Psy-A2, Rht-A1, Rht-B1, Ppd-D1, Vrn-A1, Vrn-B1 , and Cre8 . Interestingly, 17 regions affected by artificial selection were in moderate-to-high linkage disequilibrium with each other with an average r
2 value of 0.35 indicating strong simultaneous selection on specific alleles. These regions included Glu-B1, TaGw2-6A, Cre8, Ppd-D1, Rht-B1, Vrn-B1, TaSus1-7A, TaSAP1-7A , and Psy-A1 plus multiple QTL affecting wheat yield and yield components. These results highlighted the effects of the long-term artificial selection on Australian wheat germplasm and identified putative regions underlying important traits in wheat., Competing Interests: The authors declared no competing interests.- Published
- 2019
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48. Does chemotherapy improve survival in patients with nodal positive luminal A breast cancer? A retrospective Multicenter Study.
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Herr D, Wischnewsky M, Joukhadar R, Chow O, Janni W, Leinert E, Fink V, Stüber T, Curtaz C, Kreienberg R, Blettner M, Wollschläger D, and Wöckel A
- Subjects
- Aged, Chemotherapy, Adjuvant, Disease-Free Survival, Female, Humans, Lymph Nodes pathology, Lymphatic Metastasis, Middle Aged, Retrospective Studies, Survival Rate, Breast Neoplasms drug therapy, Breast Neoplasms mortality, Breast Neoplasms pathology
- Abstract
Background: In this study based on the BRENDA data, we investigated the impact of endocrine ± chemotherapy for luminal A, nodal positive breast cancer on recurrence free (RFS) and overall survival (OS). In addition, we analysed if tumor size of luminal A breast cancer influences survival in patients with the same number of positive lymph nodes., Methods: In this retrospective multi-centre cohort study data of 1376 nodal-positive patients with primary diagnosis of luminal A breast cancer during 2001-2008 were analysed. The results were stratified by therapy and adjusted by age, tumor size and number of affected lymph nodes., Results: In our study population, patients had a good to excellent prognosis (5-year RFS: 91% and tumorspecific 5-year OS 96.5%). There was no significant difference in RFS stratified by patients with only endocrine therapy and with endocrine plus chemo-therapy. Patients with 1-3 affected lymph nodes had no significant differences in OS treated only with endocrine therapy or with endocrine plus chemotherapy, independent of tumor size. Patients with large tumors and more than 3 affected lymph nodes had a significant worse survival as compared to the small tumors. However, despite the worse prognosis of those, adjuvant chemotherapy failed in order to improve RFS., Conclusions: According to our data, nodal positive patients with luminal A breast cancer have, if any, a limited benefit of adjuvant chemotherapy. Tumor size and nodal status seem to be of prognostic value in terms of survival, however both tumor size as well as nodal status were not predictive for a benefit of adjuvant chemotherapy., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2019
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49. Durum wheat genome highlights past domestication signatures and future improvement targets.
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Maccaferri M, Harris NS, Twardziok SO, Pasam RK, Gundlach H, Spannagl M, Ormanbekova D, Lux T, Prade VM, Milner SG, Himmelbach A, Mascher M, Bagnaresi P, Faccioli P, Cozzi P, Lauria M, Lazzari B, Stella A, Manconi A, Gnocchi M, Moscatelli M, Avni R, Deek J, Biyiklioglu S, Frascaroli E, Corneti S, Salvi S, Sonnante G, Desiderio F, Marè C, Crosatti C, Mica E, Özkan H, Kilian B, De Vita P, Marone D, Joukhadar R, Mazzucotelli E, Nigro D, Gadaleta A, Chao S, Faris JD, Melo ATO, Pumphrey M, Pecchioni N, Milanesi L, Wiebe K, Ens J, MacLachlan RP, Clarke JM, Sharpe AG, Koh CS, Liang KYH, Taylor GJ, Knox R, Budak H, Mastrangelo AM, Xu SS, Stein N, Hale I, Distelfeld A, Hayden MJ, Tuberosa R, Walkowiak S, Mayer KFX, Ceriotti A, Pozniak CJ, and Cattivelli L
- Subjects
- Adenosine Triphosphatases genetics, Adenosine Triphosphatases metabolism, Cadmium metabolism, Chromosomes, Plant genetics, Domestication, Genetic Variation, Genome, Plant, Phylogeny, Plant Breeding, Plant Proteins genetics, Plant Proteins metabolism, Polymorphism, Single Nucleotide, Quantitative Trait Loci, Selection, Genetic, Synteny, Tetraploidy, Triticum classification, Triticum metabolism, Triticum genetics
- Abstract
The domestication of wild emmer wheat led to the selection of modern durum wheat, grown mainly for pasta production. We describe the 10.45 gigabase (Gb) assembly of the genome of durum wheat cultivar Svevo. The assembly enabled genome-wide genetic diversity analyses revealing the changes imposed by thousands of years of empirical selection and breeding. Regions exhibiting strong signatures of genetic divergence associated with domestication and breeding were widespread in the genome with several major diversity losses in the pericentromeric regions. A locus on chromosome 5B carries a gene encoding a metal transporter (TdHMA3-B1) with a non-functional variant causing high accumulation of cadmium in grain. The high-cadmium allele, widespread among durum cultivars but undetected in wild emmer accessions, increased in frequency from domesticated emmer to modern durum wheat. The rapid cloning of TdHMA3-B1 rescues a wild beneficial allele and demonstrates the practical use of the Svevo genome for wheat improvement.
- Published
- 2019
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50. The Role of Deconstructive Teaching in the Training of Laparoscopy.
- Author
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Balafoutas D, Joukhadar R, Kiesel M, Häusler S, Loeb S, Woeckel A, and Herr D
- Subjects
- Adult, Clinical Competence, Female, Humans, Male, Curriculum, Gynecology education, Internship and Residency, Laparoscopy education, Obstetrics education, Suture Techniques education
- Abstract
Background and Objectives: Skills-lab training is crucial for the development of advanced laparoscopic skills. In this study, we examined whether a systematic deconstructive and comprehensive tutoring approach improves training results in laparoscopic suturing and intracorporeal knot tying., Methods: Sixteen residents in obstetrics and gynecology participating in structured skills-lab laparoscopy training were randomized in 2 equal-sized groups receiving 1-on-1 tutoring either in the traditional method or according to the Peyton's 4-step approach, involving an additional training step, with the trainees instructing the tutor to perform the exercises. A validated assessment tool (revised Objective Structured Assessment of Technical Skills) and the number of completed square knots per training session and the mean time per knot were used to assess the efficacy of training in both groups., Results: Trainees in Peyton's group achieved significantly higher revised Objective Structured Assessment of Technical Skills scores (28.6 vs 23.9 points; P = .05) and were able to improve their scores during autonomous training repetitions, in contrast to the trainees not in Peyton's group (difference +4.75 vs -4.29 points, P = .02). Additionally, they seemed to be able to perform a greater number of successful knots during the exercise and to complete each knot quicker with the later observations failing to reach the threshold of statistical significance., Conclusion: Peyton's 4-step approach seemed to be superior for teaching laparoscopic skills to obstetrics and gynecology residents in the skills-lab setting and can be therefore proposed for training curricula., Competing Interests: Conflicts of Interest: The authors declare that they have no conflict of interest. Informed consent: Dr. Balafoutas declares that written informed consent was obtained from the patient/s for publication of this study/report and any accompanying images.
- Published
- 2019
- Full Text
- View/download PDF
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