156 results on '"John T. Reilly"'
Search Results
2. Crystal structure of a methimazole-based ionic liquid
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Jamie C. Gaitor, Manuel Sanchez Zayas, Darrel J. Myrthil, Frankie White, Jeffrey M. Hendrich, Richard E. Sykora, Richard A. O'Brien, John T. Reilly, and Arsalan Mirjafari
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crystal structure ,ionic liquids ,methimazole ,S-allylation ,nitrogen heterocycle ,Crystallography ,QD901-999 - Abstract
The structure of 1-methyl-2-(prop-2-en-1-ylsulfanyl)-1H-imidazol-3-ium bromide, C7H11N2S+·Br−, has monoclinic (P21/c) symmetry. In the crystal, the components are linked by N—H...Br and C—H...Br hydrogen bonds. The crystal structure of the title compound undeniably proves that methimazole reacts through the thione tautomer, rather than the thiol tautomer in this system.
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- 2015
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3. Molecular mechanisms associated with leukemic transformation of MPL-mutant myeloproliferative neoplasms
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Philip A. Beer, Christina A. Ortmann, Frank Stegelmann, Paola Guglielmelli, John T. Reilly, Thomas S. Larsen, Hans C. Hasselbalch, Alessandro M. Vannucchi, Peter Möller, Konstanze Döhner, and Anthony R. Green
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Somatic activating mutations in MPL, the thrombopoietin receptor, occur in the myeloproliferative neoplasms, although virtually nothing is known about their role in evolution to acute myeloid leukemia. In this study, the MPL T487A mutation, identified in de novo acute myeloid leukemia, was not detected in 172 patients with a myeloproliferative neoplasm. In patients with a prior MPL W515L-mutant myeloproliferative neoplasm, leukemic transformation was accompanied by MPL-mutant leukemic blasts, was seen in the absence of prior cytoreductive therapy and often involved loss of wild-type MPL by mitotic recombination. Moreover, clonal analysis of progenitor colonies at the time of leukemic transformation revealed the presence of multiple genetically distinct but phylogenetically-related clones bearing different TP53 mutations, implying a mutator-phenotype and indicating that leukemic transformation may be preceded by the parallel expansion of diverse hematopoietic clones.
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- 2010
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4. Methylation of the suppressor of cytokine signaling 3 gene (SOCS3) in myeloproliferative disorders
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Nasios Fourouclas, Juan Li, Daniel C. Gilby, Peter J. Campbell, Philip A. Beer, Elaine M. Boyd, Anne C. Goodeve, David Bareford, Claire N. Harrison, John T. Reilly, Anthony R. Green, and Anthony J. Bench
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Background The JAK2 V617F mutation can be found in patients with polycythemia vera, essential thrombocythemia and idiopathic myelofibrosis. Mutation or methylation of other components of JAK/STAT signaling, such as the negative regulators suppressor of cytokine signaling 1 (SOCS1) and SOCS3, may contribute to the pathogenesis of both JAK2 V617F positive and negative myeloproliferative disorders.Design and Methods A cohort of patients with myeloproliferative disorders was assessed for acquired mutations, aberrant expression and/or CpG island hypermethylation of SOCS1 and SOCS3.Results No mutations were identified within the coding region of either gene in 73 patients with myeloproliferative disorders. No disease-specific CpG island methylation of SOCS1 was observed. SOCS1 expression was raised in myeloproliferative disorder granulocytes but the level was independent of JAK2 V617F status. Hypermethylation of the SOCS3 promoter was identified in 16 of 50 (32%) patients with idiopathic myelofibrosis but not in patients with essential thrombocythemia, polycythemia vera or myelofibrosis preceded by another myeloproliferative disorder. Confirmation of methylation status was validated by nested polymerase chain reaction and/or bisulphite sequencing. SOCS3 transcript levels were highest in patients with polycythemia vera and other JAK2 V617F positive myeloproliferative disorders, consistent with SOCS3 being a target gene of JAK2/STAT5 signaling. There was a trend towards an association between SOCS3 methylation and lower SOCS3 expression in JAK2 V617F negative patients with idiopathic myelofibrosis but not in JAK2 V617F positive ones. Finally, SOCS3 methylation was not significantly correlated with survival or other clinical variables.Conclusions SOCS3 promoter methylation was detected in 32% of patients with idiopathic myelofibrosis suggesting a possible role for SOCS3 methylation in this disorder. The pathogenetic consequences of SOCS3 methylation in idiopathic myelofibrosis remain to be fully elucidated.
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- 2008
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5. Low-dose thalidomide in myelofibrosis
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Robert Weinkove, John T. Reilly, Mary Frances McMullin, Natasha J. Curtin, Deepti Radia, and Claire N. Harrison
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Published
- 2008
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6. The frequency of JAK2 exon 12 mutations in idiopathic erythrocytosis patients with low serum erythropoietin levels
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Melanie J. Percy, Linda M. Scott, Wendy N. Erber, Claire N. Harrison, John T. Reilly, Frank G.C. Jones, Anthony R. Green, and Mary Frances McMullin
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Background and Objectives Idiopathic erythrocytosis (IE) is characterized by erythrocytosis in the absence of megakaryocytic or granulocytic hyperplasia, and is associated with variable serum erythropoietin (Epo) levels. Most patients with IE lack the JAK2 V617F mutation that occurs in the majority of polycythemia vera patients. Four novel JAK2 mutant alleles have recently been described in patients with V617F-negative myeloproliferative disorders presenting with erythrocytosis. The aims of this study were to assess the prevalence of JAK2 exon 12 mutations in IE patients, and to determine the associated clinicopathological features.Design and Methods A cohort of 58 IE patients with low to normal serum Epo levels and no known causative mutation were identified from 181 individuals diagnosed with IE. Patients’ DNA samples were screened for the presence of a JAK2 exon 12 mutation by allele-specific polymerase chain reaction and sequencing. Bone marrow trephines were examined for morphological abnormalities and the erythroid activity assessed immunohistochemically.Results Eight mutation-positive cases were identified, including one with a previously undescribed mutant JAK2 exon 12 allele and another with biallelic involvement. The hematologic features of mutation-positive and mutation-negative patients were similar, although Epo-hypersensitive erythroid progenitors occurred exclusively in patients with an exon 12 mutation (p=0.0002; n=15). Patients’ bone marrows were moderately hypercellular, as the result of erythroid hyperplasia, and several had mild megakaryocyte atypia.Interpretation and Conclusions JAK2 exon 12 mutations were detected in 27% of patients with low serum Epo levels, all of whom had Epo-independent erythroid progenitors. Consequently, IE patients presenting with either of these features should be tested for the presence of a JAK2 mutation.
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- 2007
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7. Spliceosome mutations are common in persons with myeloproliferative neoplasm-associated myelofibrosis with RBC-transfusion-dependence and correlate with response to pomalidomide
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Sonja Zweegman, Shanti Natarajan-Amé, Francesco Passamonti, Raajit K. Rampal, Moshe Talpaz, Daobin Zhou, Kelly McCaul, Mary Frances McMullin, Candido E. Rivera, Hiroshi Kawabata, Günther Gastl, H. Joachim Deeg, Heinz Gisslinger, Angela Hamblin, Vincent Ribrag, Reinier Raymakers, John Catalano, P. Mineur, Fabrizio Pane, Giuseppe Saglio, Jean Loup Demory, Josef T. Prchal, Qian Jiang, Kudrat Abdulkadyrov, Emmanuel C. Besa, Richard F. Schlenk, Gary J. Schiller, John T. Reilly, Adam J. Mead, Robert Peter Gale, William Stevenson, Gemma Buck, Kazuma Ohyashiki, Dominique Bordessoule, Mark Drummond, Jianyong Li, Ayalew Tefferi, Ting Liu, Tomoko Hata, Jianhua Zhong, Juan Carlos Hernandez Boluda, Damiano Rondelli, Norio Komatsu, John Mascarenhas, Zhixiang Shen, Timothy Devos, Alessandro M. Vannucchi, Katsuto Takenaka, Randall Brown, Haifa K. Al-Ali, Thomas J. Nevill, Jen Chin Wang, Daniel Tesfa, Jennifer O'Sullivan, Andrew Turner, Guanlin Wang, Galina Salogub, Claire N. Harrison, Dragana Milojkovic, Giovanni Barosi, James W. Vardiman, Peter A. W. te Boekhorst, Ruben A. Mesa, Jan Van Droogenbroeck, Manana Sokolova, Vikas Gupta, Lennart Nilsson, Andrey Zaritskiy, Nikolaos Barkas, Werner Linkesch, Mario Cazzola, Jean-Jacques Kiladjian, Ramon V. Tiu, Kiyoshi Ando, Onima Chowdhury, Emilio Ojeda, Martin Griesshammer, Christian Recher, Alessandro Rambaldi, Francisco Cervantes, Giorgina Specchia, Hematology, and CCA - Cancer biology and immunology
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Cancer Research ,Spliceosome ,Treatment outcome ,medicine.disease_cause ,Article ,Disease susceptibility ,SDG 3 - Good Health and Well-being ,Humans ,Medicine ,Myelofibrosis ,Myeloproliferative neoplasm ,Rbc transfusion ,Mutation ,Myeloproliferative Disorders ,business.industry ,Disease Management ,Hematology ,medicine.disease ,Pomalidomide ,Thalidomide ,Treatment Outcome ,Oncology ,Primary Myelofibrosis ,Spliceosomes ,Cancer research ,Disease Susceptibility ,Erythrocyte Transfusion ,business ,medicine.drug - Published
- 2021
8. Book Reviews
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Stephen Kneeshaw, Richard Harvey, D'Ann Campbell, Robert W. Dubay, John T. Reilly, James F. Marran, Ann W. Ellis, Thomas T. Lewis, Howard A. Barnes, Richard D. Schubart, Richard Selcer, Abraham D. Kriegel, Raymond J. Jirran, Fred R. Van Hartesveldt, Dan Levinson, and Sanford J. Gutman
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Robert William Fogel and G. R. Elton. Which Road to the Past? Two Views of History. New Haven and London: Yale University Press, 1983. Pp. vii, 136. Cloth, $14.95. Review by Stephen Kneeshaw of The School of the Ozarks. Emmanuel LeRoy Ladurie. The Mind and Method of the Historian. Translated by Sian Reynolds and Ben Reynolds. Chicago: University of Chicago Press, 1981. Pp. v, 310. Paper, $9.95. Review by Richard Harvey of Ohio University. John E. O'Connor, ed. American History/ American Television: Interpreting the Video Past. New York: Frederick Ungar Publishing Company, 1983. Pp. 463. Cloth, $17.50; Paper, $8.95. Review by D' Ann Campbell of Indiana University. Foster Rhea Dulles & Melvyn Dubofsky. Labor in America: A History. Arlington Heights, Illinois: Harlan Davidson, Inc., 1984. 4th edition. Pp. ix, 425. Cloth, $25.95. Paper, $15.95. Review by Robert W. Dubay of Bainbridge Junior College. Karen Ordahl Kupperman. Roanoke: The Abandoned Colony. Totowa, New Jersey: Rowman & Allanheld, 1984. Pp. viii, 182. Cloth, $24.95; Paper, $12.50. Review by John T. Reilly of Mount Saint Mary College. Kevin O'Reilly. Critical Thinking in American History: Exploration to Constitution. South Hamilton, Massachusetts: Hamilton-Wenham Regional High School, 1983. Pp. 86. Paper, $2.95. Teacher's Guides: Pp. 180. Paper, $12.95; Kevin O'Reilly. Critical Thinking in American History: New Republic to Civil War. South Hamilton, Massachusetts: Hamilton-Wenham Regional High School, 1984. Pp. 106. Paper, $2.95. Teacher's Guide: Pp. 190. Paper, $12.95. Review by James F. Marran of New Trier Township High School, Winnetka, Illinois. Michael J. Cassity, ed. Chains of Fear: American Race Relations Since Reconstruction. Westport, Connecticut: Greenwood Press, 1984. Pp. xxxv, 253. Cloth, $35.00. Review by Ann W. Ellis of Kennesaw College. L. P. Morris. Eastern Europe Since 1945. London and Exeter, New Hampshire: Heinemann Educational Books, 1984. Pp. 211. Paper, $10.00. Review by Thomas T. Lewis, Mount Senario College. John Marks. Science and the Making of the Modern World. Portsmouth, New Hampshire: Heinemann Educational Books, Inc., 1983. Pp. xii, 507. Paper, $25.00. Review by Howard A. Barnes of Winston-Salem State University. Kenneth G. Alfers, Cecil Larry Pool, William F. Mugleston, eds. American's Second Century: Topical Readings, 1865-Present. Dubuque, Iowa: Kendall/ Hunt Publishing Co., 1984. Pp. viii, 381. Paper, $8.95. Review by Richard D. Schubart of Phillips Exeter Academy. Sam C. Sarkesian. America's Forgotten Wars: The Counterrevoltuionary Past and Lessons for the Future. Westport, Connecticut: Greenwood Press, 1984. Pp. xiv, 265. Cloth, $29.95. Review by Richard Selcer of Mountain View College. Edward Wagenknecht. Daughters of the Covenant: Portraits of Six Jewish Women. Amherst: University of Massachusetts, 1983. Pp. viii, 192. Cloth, $17.50. Review by Abraham D. Kriegel of Memphis State University. Morton Borden. Jews, Turks, and Infidels. Chapel Hill and London: University of North Carolina Press, 1984. Pp. x, 163. Cloth, $17.95. Review by Raymond J. Jirran of Thomas Nelson Community College. Richard Schlatter, ed. Recent Views on British History: Essays on Historical Writing Since 1966. New Brunswick: Rutgers University Press, 1984. Pp. xiii, 524. Cloth, $50.00. Review by Fred R. van Hartesveldt of Fort Valley State College. Simon Hornblower. The Greek World, 479-323 B.C. London and New York: Methuen, 1983. Pp. xi, 354. Cloth, $24.00; Paper, $11.95. Review by Dan Levinson of Thayer Academy, Braintree, Massachusetts. H. R. Kedward. Resistance in Vichy France. New York: Oxford University Press, 1978. Paper edition 1983. Pp. ix, 311. Paper, $13.95. Review by Sanford J. Gutman of the State University of New York at Cortland.
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- 2020
9. Study of biocatalytic activity of histidine ammonia lyase in protic ionic liquids
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Michael A. Coats, Arsalan Mirjafari, Melissa M. Reardon, and John T. Reilly
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chemistry.chemical_classification ,Hofmeister series ,010405 organic chemistry ,010402 general chemistry ,Condensed Matter Physics ,01 natural sciences ,Atomic and Molecular Physics, and Optics ,0104 chemical sciences ,Electronic, Optical and Magnetic Materials ,Ion ,Catalysis ,Chaotropic agent ,chemistry.chemical_compound ,Enzyme ,chemistry ,Ionic liquid ,Materials Chemistry ,Organic chemistry ,Physical and Theoretical Chemistry ,Spectroscopy ,Histidine ammonia-lyase - Abstract
The effect of a series of protic ionic liquids on the catalytic activity of histidase (EC 4.3.1.3) using an enzymatic assay that monitored the growth of the trans-urocanic acid peak at 277 nm was studied. Results of the inhibition experiments indicated the that the ionic liquids with chaotropic bis(trifluoromethane)sulfonimide anion [NTf2−] had a significant stabilizing effect on the catalytic activity, which is reverse of the Hofmeister series.
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- 2017
10. Monitoring of chimerism following allogeneic haematopoietic stem cell transplantation (HSCT): Technical recommendations for the use of Short Tandem Repeat (STR) based techniques, on behalf of the United Kingdom National External Quality Assessment Service
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Jordan Clark, John A. Snowden, David Barnett, Karen Molloy, Helena Lee, Laurence Pearce, Stuart Scott, Najeem'deen Folarin, Liam Whitby, Hazel J. Clouston, Leigh Keen, Geoffrey I. Carter, Joanne Mason, Sproul Am, Andrea L. Jack, Tony Jackson, and John T. Reilly
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Transplantation Chimera ,medicine.medical_specialty ,business.industry ,Hematopoietic Stem Cell Transplantation ,Early detection ,Data interpretation ,Hematology ,Chimerism ,Transplantation ,Clinical trial ,surgical procedures, operative ,Immunophenotyping ,Immunology ,External quality assessment ,Humans ,Transplantation, Homologous ,Medicine ,Genetic Testing ,Stem cell ,Watchful Waiting ,business ,Intensive care medicine ,DISEASE RELAPSE ,Microsatellite Repeats - Abstract
Analysis of short tandem repeats (STR) is the predominant method for post-transplant monitoring of donor engraftment. It can enable early detection of disease relapse, level of engraftment and provide useful information on the graft-versus-host disease (GVHD)/graft-versus-tumour (GVT) effect, facilitating therapeutic intervention. Harmonization and standardization of techniques and result interpretation is essential to reduce the impact of laboratory variability on both clinical management and the results of multi-centre clinical trials. However, the United Kingdom National External Quality Assessment Service for Leucocyte Immunophenotyping (UK NEQAS LI) has highlighted significant issues inherent in STR testing that impact upon inter- and intra- laboratory variation. We present here consensus best practice guidelines and recommendations for STR chimerism testing, data interpretation and reporting that have been drawn up and agreed by a consortium of 11 UK and Eire clinical laboratories. This document uses data obtained from the UK NEQAS LI Post-Stem Cell Transplant (SCT) Chimerism Monitoring Programme.
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- 2014
11. Standardizing leucocyte PNH clone detection: An international study
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D. Robert Sutherland, Michael Keeney, Alison Whitby, David Barnett, Liam Whitby, Erica Acton, John T. Reilly, Michael J. Borowitz, Stephen J. Richards, Andrea Illingworth, and Matthew Fletcher
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medicine.medical_specialty ,education.field_of_study ,Histology ,business.industry ,Operating procedures ,Population ,Clone (cell biology) ,Cell Biology ,medicine.disease ,Laboratory results ,Pathology and Forensic Medicine ,Interquartile range ,hemic and lymphatic diseases ,Internal medicine ,Immunology ,External quality assessment ,Paroxysmal nocturnal hemoglobinuria ,Medicine ,Detection rate ,business ,education - Abstract
Background: Consensus and Practical Guidelines for robust high-sensitivity detection of glycophosphatidylinostitol-deficient structures on red blood cells and white blood cells in paroxysmal nocturnal hemoglobinuria (PNH) were recently published. Methods: UK NEQAS LI issued three stabilized samples manufactured to contain no PNH cells (normal), approximately 0.1% and 8% PNH leucocyte populations, together with instrument-specific Standard Operating Procedures (SOPs) and pretitered antibody cocktails to 19 international laboratories experienced in PNH testing. Samples were tested using both standardized protocol/reagents and in-house protocols. Additionally, samples were issued to all participants in the full PNH External Quality Assessment (EQA) programs. Results: Expert laboratory results showed no difference in PNH clone detection rates when using standardized and their “in-house” methods, though lower variation around the median was found for the standardized approach compared to in-house methods. Neutrophil analysis of the sample containing an 8% PNH population, for example, showed an interquartile range of 0.48% with the standardized approach compared with 1.29% for in-house methods. Results from the full EQA group showed the greatest variation with an interquartile range of 1.7% and this was demonstrated to be significantly different (P < 0.001) to the standardized cohort. Conclusions: The results not only demonstrate that stabilized whole PNH blood samples are suitable for use with currently recommended high-sensitivity reagent cocktails/protocols but also highlight the importance of using carefully selected conjugates alongside the standardized protocols. While much more variation was seen among the full UK NEQAS LI EQA group, the standardized approach lead to reduced variation around the median even for the experienced laboratories. V C 2014 Clinical Cytometry Society
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- 2014
12. Analysis of the Self-Association of Aliphatic Alcohols Using Fourier Transform Infrared (FT-IR) Spectroscopy
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John T. Reilly, Marc D. Donohue, Arun Thomas, Chi Y. Luebehusen, and Aileen R. Gibson
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Chemistry ,Infrared ,Hydrogen bond ,General Chemical Engineering ,Thermodynamics ,General Chemistry ,Industrial and Manufacturing Engineering ,symbols.namesake ,chemistry.chemical_compound ,Fourier transform ,Monomer ,symbols ,Molecule ,Organic chemistry ,Chemical equilibrium ,Spectroscopy ,Equilibrium constant - Abstract
A number of industrially important systems contain molecules, such as alcohols, that form hydrogen bonds. To correlate the thermodynamic properties of such systems, assumptions must be made in modeling the chemical equilibrium. It has been found that the data can be fit to a high degree of accuracy if it is assumed that the system contains monomers, dimers, and trimers or tetramers. Alcohols are often modeled by an infinite equilibrium model that takes into account associated species of all sizes. In this model and in others as well, an additional assumption must be made concerning the values of the various equilibrium constants; it usually is assumed that all of the equilibrium constants for a given species are equal. In this work, Fourier transform infrared (FT-IR) spectroscopy has been used to study the chemical association of aliphatic alcohols. Analysis of FT-IR spectroscopic data was used to determine the species present in a mixture and the corresponding equilibrium constants and also to evaluate t...
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- 2013
13. Comparison of methodological data measurement limits in CD4+T lymphocyte flow cytometric enumeration and their clinical impact on HIV management
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Matthew Fletcher, John T. Reilly, Liam Whitby, David Barnett, Alison Whitby, and Matthew Helbert
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Oncology ,medicine.medical_specialty ,Histology ,business.industry ,Hiv management ,Cell Biology ,T lymphocyte ,Confidence interval ,Pathology and Forensic Medicine ,Immunophenotyping ,T-Lymphocyte Count ,Internal medicine ,Immunology ,External quality assessment ,Enumeration ,Proficiency testing ,Medicine ,business - Abstract
UK NEQAS for Leucocyte Immunophenotyping, an ILAC G13:2000 accredited External Quality Assessment (EQA) organization, with over 3000 international laboratories participating in 14 programmes, issues 2 proficiency testing samples of stabilized whole blood to 824 participants in the Immune Monitoring (lymphocyte subset) programme every two months. We have undertaken a study of 58,626 flow cytometric absolute CD4⁺ T lymphocyte count data sets from these laboratories over a 12-year-period (2001-2012) to determine counting method variation in data measurement limits and how this could influence the clinical management of HIV patients. Comparison of relative error and 99.9% confidence limits for absolute CD4⁺ T lymphocyte values was undertaken using dual platform (DP) and single platform (SP) data and showed that the SP consistently outperformed DP, giving lower relative errors and confidence limits at clinically significant absolute CD4⁺ T lymphocyte counts. Our data shows that absolute CD4⁺ T lymphocyte counts should be obtained using single platform technology to reduce the variability at clinically relevant levels. On data where results (irrespective of platform) were below the international treatment threshold of 350 cells/μl, there was no significant misclassification between either SP or DP techniques meaning most patients would receive the correct treatment at the correct time. However, results that were above the treatment level of 350 cells/μl had a significant difference (P = 0.04) between DP and SP platforms, suggesting patients monitored using DP technology were 20% more likely to start therapy prematurely than those monitored with SP technology.
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- 2013
14. Modification of British committee for standards in haematology diagnostic criteria for essential thrombocythaemia
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Nauman Butt, John T. Reilly, Adam J. Mead, Eibhlin Conneally, Anthony R. Green, Richard Murrin, Mary Frances McMullin, Claire N. Harrison, Deepti Radia, Mark Drummond, Peter J. Campbell, and Nicholas C.P. Cross
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medicine.medical_specialty ,Diagnosis, Differential ,Internal medicine ,Correspondence ,medicine ,Humans ,In patient ,Myelofibrosis ,Hematology ,medicine.diagnostic_test ,Thrombocytosis ,Platelet Count ,business.industry ,Bone Marrow Examination ,medicine.disease ,Dermatology ,Bone marrow examination ,Mutation ,Practice Guidelines as Topic ,Immunology ,Differential diagnosis ,business ,Megakaryocytes ,Algorithms ,Calreticulin Gene ,Thrombocythemia, Essential - Abstract
The diagnosis of the myeloproliferative neoplasms (MPN)‒ essential thrombocythaemia (ET) and primary myelofibrosis (PMF) ‒ in patients lacking a molecular marker is challenging. Recently, mutations in exon 9 of the calreticulin gene (CALR) have been described in around one-third of ET and MF patients (Klampfl et al, 2013a; Nangalia et al, 2013). Notably, these mutations are almost always seen in JAK2 V617F-negative and MPL-non-mutated patients and account for the majority of these cases. Such is the prevalence of these mutations we suggest that they are added to the British Committee for Standards in Haematology criteria for the diagnosis of ET and also PMF (Harrison et al, 2010; Reilly et al, 2012) (evidence grade 1A). The modified diagnostic criteria and algorithms are shown in
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- 2016
15. STAT1 activation in association with JAK2 exon 12 mutations
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Carlos Besses, Konstanze Döhner, Francesca Pagano, Fontanet Bijou, Charles E. Massie, Paola Guglielmelli, John T. Reilly, Jean-Michel Boiron, Frank Stegelmann, Anthony R. Green, Alessandro M. Vannucchi, Eric Lippert, Claire N. Harrison, Edwin Chen, Yvonne Silber, Anna L. Godfrey, Beatriz Bellosillo, Massie, Charles [0000-0003-2314-4843], Green, Tony [0000-0002-9795-0218], and Apollo - University of Cambridge Repository
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0301 basic medicine ,Adult ,Male ,missense ,essential ,education ,Mutation, Missense ,Biology ,Chronic Myeloproliferative Disorders ,Hematopoiesis ,JAK2 ,03 medical and health sciences ,Exon ,Polycythemia vera ,STAT1 ,Downregulation and upregulation ,hemic and lymphatic diseases ,Gene expression ,80 and over ,medicine ,Humans ,Letters to the Editor ,Gene ,health care economics and organizations ,Aged ,Aged, 80 and over ,Janus kinase 2 ,Hematology ,Exons ,thrombocythemia ,Janus Kinase 2 ,Middle Aged ,medicine.disease ,mutations ,Molecular biology ,Haematopoiesis ,030104 developmental biology ,STAT1 Transcription Factor ,Amino Acid Substitution ,Cancer research ,biology.protein ,JAK2 exon 12 ,activation ,Female ,adult ,aged ,aged, 80 and over ,amino acid substitution ,female ,humans ,male ,middle aged ,exons ,janus kinase 2 ,mutation, missense ,stat1 transcription factor ,thrombocythemia, essential ,hematology ,mutation ,Thrombocythemia, Essential - Abstract
JAK2 exon 12 mutations are associated with more marked and isolated erythrocytosis than JAK2V617F. We analyzed expression profiles of JAK2 exon 12-mutant and wild-type erythroid colonies from patients with polycythemia vera (PV). Exon 12 mutations were associated with interferon-target gene upregulation, STAT1 activation and additional gene expression changes that were quantitatively and qualitatively similar to those in JAK2V617F-heterozygous cells from essential thrombocythemia (ET) patients. These results demonstrate that JAK2 exon 12-mutated PV does not reflect attenuated STAT1 signaling, and that transcriptional consequences of JAK2 mutations are remarkably similar in JAK2 exon 12-mutated PV and JAK2V617F-positive ET.
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- 2016
16. JAK2V617F homozygosity arises commonly and recurrently in PV and ET, but PV is characterized by expansion of a dominant homozygous subclone
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Christina A. Ortmann, Anna L. Godfrey, Paola Guglielmelli, Claire N. Harrison, Frank Stegelmann, John T. Reilly, Carlos Besses, Anthony R. Green, Fontanet Bijou, Francesca Pagano, Eric Lippert, Alessandro M. Vannucchi, Jean-Michel Boiron, Edwin Chen, Beatriz Bellosillo, Yvonne Silber, Konstanze Döhner, Peter J. Campbell, and Mary Frances McMullin
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Heterozygote ,Immunology ,Polycythemia ,Biology ,Polymerase Chain Reaction ,Biochemistry ,Article ,Exon ,Essential ,Polycythemia vera ,Recurrence ,hemic and lymphatic diseases ,medicine ,Humans ,Dominant ,Thrombocythemia ,Polycythemia Vera ,Genes, Dominant ,Genetics ,Janus kinase 2 ,Janus Kinase 2 ,Microsatellite Repeats ,Mutation ,Prognosis ,Thrombocythemia, Essential ,Homozygote ,Hematology ,Cell Biology ,Essential thrombocythemia ,Breakpoint ,Heterozygote advantage ,medicine.disease ,Molecular biology ,Genes ,Mutation (genetic algorithm) ,biology.protein ,Microsatellite - Abstract
Subclones homozygous for JAK2V617F are more common in polycythemia vera (PV) than essential thrombocythemia (ET), but their prevalence and significance remain unclear. The JAK2 mutation status of 6495 BFU-E, grown in low erythropoietin conditions, was determined in 77 patients with PV or ET. Homozygous-mutant colonies were common in patients with JAK2V617F-positive PV and were surprisingly prevalent in JAK2V617F-positive ET and JAK2 exon 12-mutated PV. Using microsatellite PCR to map loss-of-heterozygosity breakpoints within individual colonies, we demonstrate that recurrent acquisition of JAK2V617F homozygosity occurs frequently in both PV and ET. PV was distinguished from ET by expansion of a dominant homozygous subclone, the selective advantage of which is likely to reflect additional genetic or epigenetic lesions. Our results suggest a model in which development of a dominant JAK2V617F-homzygous subclone drives erythrocytosis in many PV patients, with alternative mechanisms operating in those with small or undetectable homozygous-mutant clones.
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- 2012
17. Improving Survival Trends in Primary Myelofibrosis: An International Study
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Jean Loup Demory, John T. Reilly, Francesco Passamonti, Enrica Morra, Elisa Rumi, Ayalew Tefferi, Elisa Roncoroni, Brigitte Dupriez, Arturo Pereira, Alessandro M. Vannucchi, Paola Guglielmelli, and Francisco Cervantes
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Adult ,Male ,Risk ,Cancer Research ,medicine.medical_specialty ,Pediatrics ,survival ,myelofibrosis ,Constitutional symptoms ,Anemia ,Young Adult ,Sex Factors ,Risk distribution ,Internal medicine ,medicine ,Humans ,Leukocytosis ,Young adult ,Myelofibrosis ,Aged ,Aged, 80 and over ,Relative survival ,business.industry ,Age Factors ,Middle Aged ,medicine.disease ,Europe ,Survival Rate ,Oncology ,Primary Myelofibrosis ,Female ,medicine.symptom ,business ,Median survival - Abstract
Purpose Despite the lack of major improvements in the treatment of primary myelofibrosis (PMF), there are recent indications that the survival of patients might have increased over the years. This study was aimed at ascertaining whether survival prolongation has actually occurred in PMF. Patients and Methods A total of 802 patients diagnosed with PMF in four European countries were compared for the presentation of features and survival according to the diagnostic periods 1980 to 1995 (n = 434) and 1996 to 2007 (n = 368); relative survival was estimated for the two groups. Results Patients diagnosed between 1996 and 2007 more often had constitutional symptoms (31% v 23%) but a lower incidence of marked anemia (31% v 39%), leukocytosis greater than 25 × 109/L (9% v 13%), and blood blasts (27% v 33%); risk distribution was comparable between the two groups. Median survival was 4.6 years (95% CI, 4.0 to 5.1) for patients from 1980 to 1995 and 6.5 years (95% CI, 5.5 to 7.4) for patients from 1996 to 2007 (P < .001). The latter group of patients showed improved relative survival, especially for women, patients younger than age 65 years, and patients with low or intermediate-1–risk disease. Rates of PMF-attributable mortality at 5 and 10 years were significantly lower in the second period; this reduction in disease-specific mortality occurred across all patient subgroups, except in intermediate-2–risk or high-risk patients. Conclusion Survival of PMF is steadily improving, except in patients in poor-risk categories. This observation must be taken into account at the time of evaluating the survival impact of newer therapies for PMF, which are currently being tested in these patient subpopulations.
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- 2012
18. VERITAS?: A Time for VERIQAS™ and a new approach to training, education, and the quality assessment of CD4+ T lymphocyte counting (I)
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John Wong, Raul Louzao, David Barnett, Liam Whitby, Thomas N. Denny, and John T. Reilly
- Subjects
CD4-Positive T-Lymphocytes ,Quality Control ,Laboratory Proficiency Testing ,medicine.medical_specialty ,Histology ,business.industry ,Quality assessment ,Training education ,Cell Biology ,Troubleshooting ,Article ,CD4 Lymphocyte Count ,Pathology and Forensic Medicine ,Internal quality ,Proof of concept ,External quality assessment ,Humans ,Medicine ,Snapshot (computer storage) ,Medical physics ,business - Abstract
Background: The aim of clinical laboratories is to produce accurate and reproducible results to enable effective and reliable clinical practice and patient management. The standard approach is to use both internal quality control (IQC) and external quality assessment (EQA). IQC serves, in many instances, as a “go, no go” tool to provide real time assurance that instruments and reagent or test systems are performing within defined specifications. EQA however, takes a snapshot at a specific point in time of the full testing process, results are compared to other laboratories performing similar testing but inevitably has some built in delay from sample issue to performance data review. In addition, if IQC or EQA identify areas of concern it can be difficult to determine the exact nature of the problem. In an attempt to address this problem, we have developed an instant QA panel that we have termed VERIQAS™, specifically for CD4+ T lymphocyte counting, and have undertaken a “proof of principle” pilot study to examine how the use of VERIQAS™ could result in improvement of laboratory performance. In addition, we have examined how this approach could be used as a training and education tool (in a domestic/international setting) and potentially be of value in instrument validation/switch studies (a switch study being defined as a laboratory changing from one method/instrument to a new method/instrument with the VERIQAS™ panel being used as an adjunct to their standard switch study protocol). Methods: The basic panel consists of 20 stabilized samples, with predefined CD4+ T lymphocyte counts, that span low clinically relevant to normal counts, including some blinded replicates (singlet up to quadruplicate combinations). The CD4+ T lymphocyte target values for each specimen is defined as the trimmed mean ± 2 trimmed standard deviations, where the trimmed values are derived from the CD4+ T lymphocyte counts reported by the participating centers (∼780 laboratories) that receive each UK NEQAS for Leucocyte Immunophenotyping send out. Results for the VERIQAS™ panel were returned online, via a specially designed website, and the participant was provided with an immediate assessment (pass or fail). Results: To date, the panel has been preliminary trialed by eight laboratories to (i) assess pre-EQA qualification (two laboratories); (ii) address performance issues (two laboratories); or (iii) validate new instruments or techniques (four laboratories). Interestingly, even in this pilot study, the panel has been instrumental in identifying specific technical problems in laboratories with EQA performance issues as well as confirming that implementation of new techniques or instruments have been successful. Conclusion: We report here a new and novel “proof of principle” pilot study to quality assessment, that we have termed VERIQAS™, designed to provide instant feedback on performance. Participating laboratories receive 20 “blinded” samples that are in singlet up to quadruplicate combinations. Once a centre reports its results via a website, immediate feedback is provided to both the participant and the EQA organizers, enabling, if required, the initiation of targeted remedial action. We have also shown that this approach has the potential to be used as a tool for prequalification, troubleshooting, training and instrument verification. Pilot phase field trials with VERIQAS™ have shown that the panel can highlight laboratory performance problems, such as suboptimal instrument set up, pipetting and gating strategies, in a rapid and efficient manner. VERIQAS™ will now be introduced, where appropriate, as a second phase study within UK NEQAS for Leucocyte Immunophenotyping to assist those laboratories that have performance issues and also made available to laboratories for training and education of staff and instrument validation studies. © 2011 International Clinical Cytometry Society.
- Published
- 2011
19. ISHAGE protocol: Are we doing it correctly?
- Author
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John T. Reilly, Matthew Fletcher, Alison Whitby, Liam Whitby, David Barnett, D. Robert Sutherland, and Michael Keeney
- Subjects
Quality Control ,Pathology ,medicine.medical_specialty ,Histology ,Quality Assurance, Health Care ,Cell Survival ,Antigens, CD34 ,Immunophenotyping ,Pathology and Forensic Medicine ,Leukocyte Count ,Humans ,Medicine ,Medical physics ,Leukapheresis ,Cell survival ,Retrospective Studies ,business.industry ,Quality assessment ,Reproducibility of Results ,Cell Biology ,Flow Cytometry ,Hematopoietic Stem Cells ,Peripheral blood ,Blood Component Removal ,business ,Quality assurance - Abstract
Background: Flow cytometric CD34+ stem cell enumeration is routinely performed to optimize timing of peripheral blood stem cell collections and assess engraftment capability of the apheresis product. While a number of different flow methodologies have been described, the highly standardized ISHAGE protocol is currently the most widely employed, with 204/255 (81%) international participants in the UK NEQAS CD34+ stem cell enumeration program indicating their use of this method. Recently, two laboratories were identified as persistent poor performers, a fact attributed to incorrect ISHAGE protocol usage/setup. This prompted UK NEQAS to question whether other laboratories were making similar errors and, if so, how this might affect individual EQA performance. Methods and Results: In send out 0801, where two stabilized samples were issued, the EQA center surveyed 255 participants with flow analysis data and subsequent results collected. One hundred and ninety-six laboratories returned results with 103 returning dot plots. Eighty-three out of one hundred and three stated that they used the ISHAGE protocol gating strategy but 43% (36/83) were incorrectly set-up. Analysis of the data showed those incorrectly using single platform ISHAGE gating strategy were twice as likely to fail an EQA exercise compared to those using the protocol correctly. This failure rate increased two fold when incorrect ISHAGE protocol was used in a dual platform setting. Conclusion: This study suggests a widespread fundamental lack of understanding of the ISHAGE protocol and the need to deploy it correctly, potentially having significant clinical implications and highlights the need to monitor participants rigorously in their deployment of the ISHAGE protocol. It is hoped that once these findings have been disseminated, performance can be improved. © 2011 International Clinical Cytometry Society
- Published
- 2011
20. Inhibition of Histidine Ammonia Lyase by 8-Methoxypsoralen and Psoralen-oxidized Photoproducts
- Author
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John T. Reilly, Dominick A. Vitale, Tiffiany R. Risher, Kyle A. Troester, and Trista T. Tyner
- Subjects
chemistry.chemical_classification ,Ethanol ,biology ,medicine.medical_treatment ,General Medicine ,Photochemistry ,Biochemistry ,Enzyme assay ,chemistry.chemical_compound ,Enzyme ,Non-competitive inhibition ,chemistry ,PUVA therapy ,biology.protein ,medicine ,sense organs ,Physical and Theoretical Chemistry ,Psoralen ,Histidine ammonia-lyase ,Histidine - Abstract
The effect of 8-methoxypsoralen-UVA therapy on the catalysis of histidine to trans-urocanic acid by histidine ammonia lyase (HAL, EC 4.3.1.3) was examined using an enzymatic assay from Sigma-Aldrich where the growth of the trans-urocanic acid peak at 277 nm was monitored. A Rayonet Photochemical Mini Reactor (Model RMR-600) equipped with eight, 3500 A light sources and a custom UVA filter (Model S-BAL3 2.9 mm), from the Solar Light Company, were used to expose various reaction mixtures to broadband UVA light and UVA/UVB light. A UV-Vis spectrophotometer (Model Shimadzu UV 2540) with a temperature-controlled cell holder (Model TCC240) was used to monitor the growth of the trans-urocanic peak. Results of dark-binding experiments of 8-methoxypsoralen in denatured ethanol indicate no inhibition of enzyme activity due to ethanol but noncompetitive inhibition due to 8-methoxypsoralen. The effects of preirradiated 8-methoxypsoralen, with both broadband UVA and UVA/UVB, indicate that inhibition was due to psoralen-oxidized photoproducts. Inhibition of HAL was found when exposed to broadband UVA/UVB and to a lesser extent when exposed to broadband UVA.
- Published
- 2010
21. Tribbles-1 and -2 are tumour suppressors, down-regulated in human acute myeloid leukaemia
- Author
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Endre Kiss-Toth, P. R. Winship, Anne Goodeve, Hye Youn Sung, John T. Reilly, and Daniel C. Gilby
- Subjects
Adult ,Male ,MAPK/ERK pathway ,NPM1 ,Myeloid ,Adolescent ,Microarray ,Blotting, Western ,Immunology ,Protein Array Analysis ,Down-Regulation ,Protein Serine-Threonine Kinases ,Biology ,Young Adult ,Cell Line, Tumor ,Gene expression ,medicine ,Humans ,Immunology and Allergy ,RNA, Messenger ,Cells, Cultured ,Gene knockdown ,Cell growth ,Intracellular Signaling Peptides and Proteins ,Infant ,Leukemia, Myeloid, Acute ,medicine.anatomical_structure ,Apoptosis ,Child, Preschool ,Calcium-Calmodulin-Dependent Protein Kinases ,Cancer research ,Female ,Nucleophosmin - Abstract
Constitutive MAPK signalling is observed in approximately 50% of acute myeloid leukaemia (AML) cases. JNK activation in particular is associated with treatment failure in AML. Tribbles proteins (trb-1, trb-2 and trb-3) are potent negative regulators of MAPK pathways influencing apoptosis, differentiation and cell-cycle progression. Here we aimed to examine tribbles gene expression in AML and to characterise their role in leukaemic cells. A microarray dataset was interrogated for tribbles expression levels in AML cases and healthy controls. Myeloid cell proliferation and apoptosis were assayed in response to trb-1/trb-2 gene knockdown and overexpression, as well as a physical and functional interaction between trb and C/EBPalpha. Trb-2 expression was reduced in AML compared to healthy controls (correlating with nucleophosmin (NPM1) mutations), while low trb-1 expression was associated with inactive C/EBPalpha. In vitro assays indicated that trb-1/trb-2 are growth restrictive and pro-apoptotic in Me-1 cells, each capable of inhibiting JNK activation. JNK inactivation was itself associated with reduced Bcl-2 Ser70 phosphorylation, a residue which, when phosphorylated, maintains the anti-apoptotic activity of Bcl-2. Consistent with this, tribbles-mediated dephosphorylation of Bcl-2 Ser70 was associated with subsequent apoptosis. Trb-1/trb-2 transcription appeared to be moderately C/EBPalpha-responsive, and physical interaction between C/EBPalpha and trb-1/trb-2 was observed, suggesting a potential for auto-regulation of trb-1 and trb-2 transcription. In conclusion, we propose that trb-1 and trb-2 tumour suppressor activity may be abrogated in a proportion of AML patients. This may lead to enhanced cell survival, and therefore contribute to pathogenesis of the disease. Trb-1/trb-2 may, therefore, represent useful therapeutic targets for the treatment of AML in patients with dys-regulated trb activity.
- Published
- 2010
22. Anagrelide for the treatment of essential thrombocythemia: a survey among European hematologists/oncologists
- Author
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John T. Reilly
- Subjects
Adult ,medicine.medical_specialty ,Adolescent ,Anagrelide Hydrochloride ,Hydroxycarbamide ,Young Adult ,Internal medicine ,Epidemiology ,Humans ,Medicine ,Jak2v617f mutation ,Practice Patterns, Physicians' ,Aged ,Aged, 80 and over ,Aspirin ,business.industry ,Essential thrombocythemia ,Data Collection ,Hematology ,Anagrelide ,Janus Kinase 2 ,Middle Aged ,medicine.disease ,Surgery ,Europe ,Current management ,Quinazolines ,business ,Platelet Aggregation Inhibitors ,Thrombocythemia, Essential ,medicine.drug - Abstract
Two hundred and fifty hematologists and oncologists (50 each from France, Germany, Italy, Spain and the United Kingdom) participated in this survey to assess the current management of essential thrombocythemia (ET), with particular reference to the use of anagrelide. Data were collected between October 9 and November 2, 2006 on 2000 patients with ET. Thirty-eight per cent of patients had been tested for the Janus kinase 2 (JAK2) mutation (JAK2V617F), of whom 54% tested positive. JAK2V617F mutation status was not influenced by age, gender or cardiovascular risk. Overall, 297 patients (14.9%) were receiving anagrelide hydrochloride; 16.8% of these patients were aged 18-40 years, 43.1% aged 41-60 years and 40.1% aged over 60 years. Hydroxycarbamide, alone or in combination with aspirin, was the most commonly prescribed treatment in 136/191 (71.2%) patients prior to switching to anagrelide. In conclusion, this survey provides a useful insight into the epidemiology of ET and current prescribing patterns for anagrelide in Europe.
- Published
- 2009
23. Long-term stabilized blood samples as controls for flow cytometric HLA-B27 screening: A feasibility study
- Author
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Herbert Hooijkaas, Kees Sintnicolaas, Vivian Granger, David Barnett, Wilfried H. B. M. Levering, Jan W. Gratama, Henk Wind, John T. Reilly, Medical Oncology, and Immunology
- Subjects
Quality Control ,Pathology ,medicine.medical_specialty ,Histology ,Heart Diseases ,Negative control ,Cross Reactions ,Stain ,Immunophenotyping ,Pathology and Forensic Medicine ,External quality assessment ,Humans ,Medicine ,Alleles ,HLA-B27 Antigen ,Whole blood ,HLA-B27 ,Chromatography ,business.industry ,Histocompatibility Testing ,Antibodies, Monoclonal ,Cell Biology ,Reference Standards ,Flow Cytometry ,Peripheral blood ,Blood Preservation ,HLA-B Antigens ,Spondylarthropathies ,business ,Cytometry - Abstract
Background: Long-term stabilized blood samples are potentially useful as positive or negative procedure controls for flow cytometric HLA-B27 screening, and could serve as test samples in an external quality assessment (EQA) scheme. We evaluated long-term stabilized whole blood specimens as prepared for the UK NEQAS for Leucocyte Immunophenotyping EQA scheme (Sheffield, UK). Methods: Peripheral blood samples were obtained from nine blood bank donors with known HLA-B typing. Short-term stabilization with Trans-FIX™ was performed before shipment to Sheffield. Thereafter, long-term stabilization was performed. Commercially available HLA-B27 mAb were tested periodically between 1 week and 12 months on (i) fresh, (ii) short-term stabilized, and (iii) long-term stabilized blood samples using a stain, lyse, and wash technique. We compared the forward scatter (FSC), sideward scatter (SSC), and fluorescence signals of lymphocytes as a function of time. Furthermore, a pilot send-out with stabilized blood samples of four blood bank donors was distributed among the participants to the Benelux EQA scheme for HLA-B27 screening, and results were compared with historical EQA data obtained using nonstabilized blood samples from the same donors. Results: There were no major effects on FSC and SSC characteristics of lymphocytes. Background fluorescence of stabilized samples increased and specific fluorescence of stabilized HLA-B27 positive samples decreased as compared with fresh samples. However, discrimination between the investigated HLA-B27 positive and HLA-B27 negative samples remained feasible poststabilization. In the pilot send-out, the results obtained with stabilized samples were less concordant than with the corresponding fresh samples due to variable quality of the stabilized samples. Conclusion: Long-term stabilized whole blood samples are potentially useful as true HLA-B27 positive and true HLA-B27 negative control cells for daily and longitudinal quality control of flow cytometric HLA-B27 screening. In the same way, long-term stabilized samples may be used for EQA purposes. However, these samples are currently not feasible for reagent validation purposes. Extensive quality control of long-term stabilized samples is necessary before distribution in multicenter surveys. © 2008 Clinical Cytometry Society
- Published
- 2008
24. The frequency of JAK2 exon 12 mutations in idiopathic erythrocytosis patients with low serum erythropoietin levels
- Author
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Linda M. Scott, Claire N. Harrison, Mary Frances McMullin, Anthony R. Green, Wendy N. Erber, John T. Reilly, Melanie J. Percy, and Frank G C Jones
- Subjects
medicine.medical_specialty ,Polycythemia ,Biology ,Gastroenterology ,Cohort Studies ,Exon ,Polycythemia vera ,Megakaryocyte ,Bone Marrow ,hemic and lymphatic diseases ,Internal medicine ,Prevalence ,medicine ,Humans ,Erythropoietin ,Polycythemia Vera ,Alleles ,Erythroid Precursor Cells ,Hematology ,Essential thrombocythemia ,Erythroid Hyperplasia ,Exons ,Janus Kinase 2 ,medicine.disease ,United Kingdom ,medicine.anatomical_structure ,Amino Acid Substitution ,Immunology ,Ireland ,medicine.drug - Abstract
Background and Objectives Idiopathic erythrocytosis (IE) is characterized by erythrocytosis in the absence of megakaryocytic or granulocytic hyperplasia, and is associated with variable serum erythropoietin (Epo) levels. Most patients with IE lack the JAK2 V617F mutation that occurs in the majority of polycythemia vera patients. Four novel JAK2 mutant alleles have recently been described in patients with V617F-negative myeloproliferative disorders presenting with erythrocytosis. The aims of this study were to assess the prevalence of JAK2 exon 12 mutations in IE patients, and to determine the associated clinicopathological features. Design and Methods A cohort of 58 IE patients with low to normal serum Epo levels and no known causative mutation were identified from 181 individuals diagnosed with IE. Patients’ DNA samples were screened for the presence of a JAK2 exon 12 mutation by allele-specific polymerase chain reaction and sequencing. Bone marrow trephines were examined for morphological abnormalities and the erythroid activity assessed immunohistochemically. Results Eight mutation-positive cases were identified, including one with a previously undescribed mutant JAK2 exon 12 allele and another with biallelic involvement. The hematologic features of mutation-positive and mutation-negative patients were similar, although Epo-hypersensitive erythroid progenitors occurred exclusively in patients with an exon 12 mutation ( p =0.0002; n=15). Patients’ bone marrows were moderately hypercellular, as the result of erythroid hyperplasia, and several had mild megakaryocyte atypia. Interpretation and Conclusions JAK2 exon 12 mutations were detected in 27% of patients with low serum Epo levels, all of whom had Epo-independent erythroid progenitors. Consequently, IE patients presenting with either of these features should be tested for the presence of a JAK2 mutation.
- Published
- 2007
25. Specialist integrated haematological malignancy diagnostic services: an Activity Based Cost (ABC) analysis of a networked laboratory service model
- Author
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A Dalton, Josh Wright, P Thokula, N R Porter, Christopher D. Dalley, David Barnett, P Talley, Hasan Basarir, D Pearson, G. Wilson, John A. Snowden, M Fernando, A Krishnankutty, John T. Reilly, David J. Hughes, and Sue Ward
- Subjects
ABC analysis ,Pathology ,medicine.medical_specialty ,Service delivery framework ,media_common.quotation_subject ,Cost-Benefit Analysis ,Medical Oncology ,Regional Health Planning ,State Medicine ,Pathology and Forensic Medicine ,Workflow ,Laboratory service ,Predictive Value of Tests ,Information system ,Medicine ,Humans ,Quality (business) ,Operations management ,Activity-based costing ,media_common ,Estimation ,business.industry ,Clinical Laboratory Techniques ,Delivery of Health Care, Integrated ,General Medicine ,Health Care Costs ,Hematology ,Prognosis ,United Kingdom ,Models, Economic ,Hematologic Neoplasms ,Models, Organizational ,Critical Pathways ,business ,Laboratories ,Haematological malignancy ,Program Evaluation - Abstract
AimsSpecialist Integrated Haematological Malignancy Diagnostic Services (SIHMDS) were introduced as a standard of care within the UK National Health Service to reduce diagnostic error and improve clinical outcomes. Two broad models of service delivery have become established: ‘co-located’ services operating from a single-site and ‘networked’ services, with geographically separated laboratories linked by common management and information systems. Detailed systematic cost analysis has never been published on any established SIHMDS model.MethodsWe used Activity Based Costing (ABC) to construct a cost model for our regional ‘networked’ SIHMDS covering a two-million population based on activity in 2011.ResultsOverall estimated annual running costs were £1 056 260 per annum (£733 400 excluding consultant costs), with individual running costs for diagnosis, staging, disease monitoring and end of treatment assessment components of £723 138, £55 302, £184 152 and £94 134 per annum, respectively. The cost distribution by department was 28.5% for haematology, 29.5% for histopathology and 42% for genetics laboratories. Costs of the diagnostic pathways varied considerably; pathways for myelodysplastic syndromes and lymphoma were the most expensive and the pathways for essential thrombocythaemia and polycythaemia vera being the least.ConclusionsABC analysis enables estimation of running costs of a SIHMDS model comprised of ‘networked’ laboratories. Similar cost analyses for other SIHMDS models covering varying populations are warranted to optimise quality and cost-effectiveness in delivery of modern haemato-oncology diagnostic services in the UK as well as internationally.
- Published
- 2015
26. A unified definition of clinical resistance/intolerance to hydroxyurea in essential thrombocythemia: results of a consensus process by an international working group
- Author
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Giovanni Barosi, Carlos Besses, John T. Reilly, Francisco Cervantes, T Barbui, J. J. Michiels, Gunnar Birgegård, Eva Lengfelder, J Brière, Martin Griesshammer, Guido Finazzi, Heinz Gisslinger, Hans Carl Hasselbalch, Luigi Gugliotta, and Claire N. Harrison
- Subjects
Cancer Research ,medicine.medical_specialty ,Consensus Development Conferences as Topic ,Drug Resistance ,Antineoplastic Agents ,Drug resistance ,Body weight ,Hydroxycarbamide ,Internal medicine ,otorhinolaryngologic diseases ,medicine ,Humans ,Hydroxyurea ,In patient ,Thrombocythemia, Hemorrhagic ,Essential thrombocythemia ,business.industry ,Patient Selection ,food and beverages ,Reproducibility of Results ,Hematology ,International working group ,medicine.disease ,Group discussion ,Oncology ,Human medicine ,Hidroxicarbamida ,business ,Thrombocythemia, Essential ,medicine.drug - Abstract
Udgivelsesdato: 2007-Feb BACKGROUND: Three main problems hamper the identification of wheat food allergens: (1) lack of a standardized procedure for extracting all of the wheat protein fractions; (2) absence of double-blind, placebo-controlled food challenge studies that compare the allergenic profile of Osborne's three protein fractions in subjects with real wheat allergy, and (3) lack of data on the differences in IgE-binding capacity between raw and cooked wheat. METHODS: Sera of 16 wheat-challenge-positive patients and 6 patients with wheat anaphylaxis, recruited from Italy, Denmark and Switzerland, were used for sodium dodecyl sulfate-polyacrylamide gel electrophoresis/immunoblotting of the three Osborne's protein fractions (albumin/globulin, gliadins and glutenins) of raw and cooked wheat. Thermal sensitivity of wheat lipid transfer protein (LTP) was investigated by spectroscopic approaches. IgE cross-reactivity between wheat and grass pollen was studied by blot inhibition. RESULTS: The most important wheat allergens were the alpha-amylase/trypsin inhibitor subunits, which were present in all three protein fractions of raw and cooked wheat. Other important allergens were a 9-kDa LTP in the albumin/globulin fraction and several low-molecular-weight (LMW) glutenin subunits in the gluten fraction. All these allergens showed heat resistance and lack of cross-reactivity to grass pollen allergens. LTP was a major allergen only in Italian patients. CONCLUSIONS: The alpha-amylase inhibitor was confirmed to be the most important wheat allergen in food allergy and to play a role in wheat-dependent exercise-induced anaphylaxis, too. Other important allergens were LTP and the LMW glutenin subunits.
- Published
- 2006
27. International Working Group (IWG) consensus criteria for treatment response in myelofibrosis with myeloid metaplasia, for the IWG for Myelofibrosis Research and Treatment (IWG-MRT)
- Author
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D. Gary Gilliland, H. Joachim Deeg, Richard T. Silver, Pierre Noel, Nicholas C.P. Cross, Ronald Hoffman, Francisco Cervantes, Giovanni Barosi, Heinz Gisslinger, James W. Vardiman, Srdan Verstovsek, Ayalew Tefferi, Olatoyosi Odenike, Juergen Thiele, John K. Camoriano, Ruben A. Mesa, Hagop M. Kantarjian, Jorge E. Cortes, John T. Reilly, Martha Wadleigh, Brigitte Dupriez, and Lawrence A. Solberg
- Subjects
Ineffective erythropoiesis ,Oncology ,medicine.medical_specialty ,Myeloid ,medicine.medical_treatment ,Immunology ,Hematopoietic stem cell transplantation ,medicine.disease_cause ,Biochemistry ,Proto-Oncogene Proteins ,Internal medicine ,medicine ,Humans ,Myelofibrosis ,Cytopenia ,business.industry ,Cell Biology ,Hematology ,Janus Kinase 2 ,Protein-Tyrosine Kinases ,medicine.disease ,Extramedullary hematopoiesis ,Treatment Outcome ,medicine.anatomical_structure ,Pacritinib ,Primary Myelofibrosis ,Mutation ,Disease Progression ,Bone marrow ,business - Abstract
Myelofibrosis with myeloid metaplasia (MMM) is a clinicopathologic entity characterized by stem cell-derived clonal myeloproliferation, ineffective erythropoiesis, extramedullary hematopoiesis, and bone marrow fibrosis and osteosclerosis. Patients with MMM have shortened survival and their quality of life is compromised by progressive anemia, marked hepatosplenomegaly, and severe constitutional symptoms including cachexia. After decades of frustration with ineffective therapy, patients are now being served by promising treatment approaches that include allogeneic hematopoietic stem cell transplantation and immunomodulatory drugs. Recent information regarding disease pathogenesis, including a contribution to the myeloproliferative disorder phenotype by a gain-of-function JAK2 mutation (JAK2(V617F)), has revived the prospect of targeted therapeutics as well as molecular monitoring of treatment response. Such progress calls for standardization of response criteria to accurately assess the value of new treatment modalities, to allow accurate comparison between studies, and to ensure that the definition of response reflects meaningful health outcome. Accordingly, an international panel of experts recently convened and delineated 3 response categories: complete remission (CR), partial remission (PR), and clinical improvement (CI). Bone marrow histologic and hematologic remissions characterize CR and CR/PR, respectively. The panel agreed that the CI response category is applicable only to patients with moderate to severe cytopenia or splenomegaly.
- Published
- 2006
28. Flow rate calibration. III. The use of stabilized biostandards to calibrate the flow rate and calculate absolute CD4+ T-cell counts
- Author
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Viv Granger, John T. Reilly, Clare L. Walker, David Barnett, Liam Whitby, and Ian Storie
- Subjects
CD4-Positive T-Lymphocytes ,Quality Control ,Latex beads ,Histology ,Chromatography ,Cd4 t cell ,Chemistry ,Sample (material) ,Reproducibility of Results ,Cell Biology ,Reference Standards ,Flow Cytometry ,Microspheres ,CD4 Lymphocyte Count ,Pathology and Forensic Medicine ,Volumetric flow rate ,Matrix (chemical analysis) ,Viscosity ,Calibration ,External quality assessment ,Humans ,Algorithms - Abstract
Background: We have previously reported a flow rate calibration method for the determination of absolute CD4+ T-lymphocyte counts that removes the need for the addition of latex beads to each sample. However, a limitation with this approach is that a calibration factor (CF) needs to be applied to adjust for differences in viscosity between latex bead suspensions and biological specimens. We have also demonstrated the value of using stabilized whole blood samples in external quality assessment (EQA) studies; such samples have a stable absolute lymphocyte count for over 1 year, at 4°C. It was successfully demonstrated that this material can be used as a flow rate biocalibration (FRB) material for use as a flow cytometric control to provide a sample with a known CD4+ T-lymphocyte count. Such material has advantages over latex bead technology as it can act as a full process control as well as having the same matrix and viscosity characteristics as the test material, thus removing the need for a CF. Methods: In this study, we have analyzed 268 consecutive normal, abnormal, and HIV+ samples using FRB, incorporating the PanLeucoGating approach and compared this to the MultiSet method, defined as the predicate. Results: Percentage similarity statistics revealed the following: 0–3,000 CD4+ cells/μl mean percentage difference (MPD; bias) 1.2%, 95% CI of 5.6–8%; 0–200 CD4+ cells/μl MPD of 1.25%, 95% CI of 11.63–14.13%; 201–500 CD4+ cells/μl MPD of 1%, 95% CI of 4.6–6.6%. Discussion: This study demonstrates that stabilized whole blood can be used for FRB. It has the advantage of being a full process control, in addition to costing less than latex beads with highly comparable results. As bench top flow cytometers are extremely stable, this is a low cost and robust alternative to bead based methods for generating absolute CD4 counts. © 2006 International Society for Analytical Cytology
- Published
- 2006
29. Idiopathic myelofibrosis: pathogenesis to treatment
- Author
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John T. Reilly
- Subjects
Oncology ,Cancer Research ,medicine.medical_specialty ,Stromal cell ,Idiopathic myelofibrosis ,medicine.medical_treatment ,Splenectomy ,Disease ,Pathogenesis ,Internal medicine ,Humans ,Medicine ,Myelofibrosis ,business.industry ,Anemia ,Hematology ,General Medicine ,Prognosis ,medicine.disease ,Thalidomide ,Haematopoiesis ,Primary Myelofibrosis ,Growth Hormone ,Immunology ,Cytokines ,business ,medicine.drug - Abstract
Idiopathic myelofibrosis (IMF) is the least common of the chronic myeloproliferative disorders and carries the worst prognosis with a median survival of 4 years. It is a clonal haematopoietic stem-cell disorder and, although the pathogenesis remains unclear, approximately 50% of cases are known to possess an activating JAK2 V617F mutation. In contrast, the characteristic stromal proliferation is a reactive, or secondary, event that results from the aberrant release of a variety of growth factors from megakaryocytes and monocytes. Treatment for most cases is supportive, although androgens, recombinant erythropoietin, steroids and thalidomide are effective modalities for the amelioration of anaemia. Myelosuppression, splenectomy and irradiation are valuable therapeutic modalities for specific clinical situations. Prognostic scores are available to aid the identification of cases for whom bone marrow transplantation should be considered. Recently, the use of reduced intensity conditioning has resulted in prolonged survival and lower transplant-related mortality. This review summarises the recent advances in the disease's pathogenesis and discusses the role of the various therapeutic options.
- Published
- 2006
30. Der(6)t(1;6)(q21-23;p21.3): a specific cytogenetic abnormality in myelofibrosis with myeloid metaplasia
- Author
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Ayalew Tefferi, Gordon W. Dewald, Fiona M. Ross, Nicholas C.P. Cross, Ann E. Watmore, D. Dingli, John T. Reilly, Francis H. Grand, Victor Mahaffey, and Jack L. Spurbeck
- Subjects
Adult ,Male ,Pathology ,medicine.medical_specialty ,Myeloid ,Chromosomal translocation ,Biology ,Translocation, Genetic ,Metaplasia ,medicine ,Humans ,Prospective Studies ,Myelofibrosis ,Aged ,medicine.diagnostic_test ,Cytogenetics ,Chromosome Breakage ,Karyotype ,Hematology ,Middle Aged ,medicine.disease ,medicine.anatomical_structure ,Chromosomes, Human, Pair 1 ,Primary Myelofibrosis ,Karyotyping ,Chromosomes, Human, Pair 6 ,Female ,Chromosome breakage ,medicine.symptom ,Fluorescence in situ hybridization - Abstract
Chromosome anomalies are detected in approximately half of patients with myelofibrosis with myeloid metaplasia (MMM) although none of the most prevalent lesions are specific to the disease. In a prospective cytogenetic study of 81 patients with MMM, we encountered three with an unbalanced translocation between chromosomes 1 and 6 with specific breakpoints; der(6)t(1;6)(q21-23;p21.3). A subsequent Mayo Clinic cytogenetic database search identified 12 patients with this chromosome anomaly among 17 791 consecutive patients. A similar database search from Royal Hallamshire Hospital in Sheffield, UK revealed two additional patients among 8000 cases. The clinical phenotype and survival for each of these 14 patients was typical of MMM. These findings suggested that der(6)t(1;6)(q21-23;p21.3) is a highly specific cytogenetic anomaly that may harbour gene(s) specifically associated with MMM. In a preliminary fluorescence in situ hybridization study, the breakpoints on chromosome 6 in two additional cases were found to be telomeric to the gene for 51 kDa FK506-binding protein (FKBP51).
- Published
- 2005
31. Chronic neutrophilic leukemia with plasma cell dyscrasia: friends or relatives?
- Author
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John T. Reilly and Wendy N. Erber
- Subjects
Cancer Research ,Leukemia ,Oncology ,business.industry ,Immunology ,Chronic neutrophilic leukemia ,Plasma cell dyscrasia ,Medicine ,Hematology ,business ,medicine.disease ,Myeloproliferative neoplasm - Abstract
Chronic neutrophilic leukemia (CNL) is a rare clonal myeloproliferative neoplasm that was first described in 1920 by Tuohy [1]. It typically occurs in elderly patients, equally in males and females...
- Published
- 2013
32. Diagnostic pathway for the investigation of thrombocytosis
- Author
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Deepti Radia, Eibhlean Conneally, Nauman M. Butt, Mary Frances McMullin, Mark Drummond, Richard Murrin, Claire N. Harrison, John T. Reilly, Peter J. Campbell, and Anthony R. Green
- Subjects
Thrombocytosis ,Oncology ,medicine.medical_specialty ,business.industry ,MEDLINE ,Hematology ,medicine.disease ,Chronic myeloid leukaemia ,Bcr abl1 ,Internal medicine ,medicine ,Humans ,business ,Algorithms - Published
- 2013
33. Evaluation of leukocyte stabilisation in TransFix®-treated blood samples by flow cytometry and transmission electron microscopy
- Author
-
Vivian Granger, Sabrina Burattini, Loris Zamai, Barbara Canonico, Elisabetta Falcieri, Ferdinando Mannello, Stefano Papa, John T. Reilly, C. Felici, David Barnett, and Pietro Gobbi
- Subjects
Adult ,Pathology ,medicine.medical_specialty ,Tissue Fixation ,Membrane permeability ,Lymphocyte ,Immunology ,Population ,Cell Count ,Biology ,Permeability ,Immunophenotyping ,Flow cytometry ,Cell membrane ,Fixatives ,chemistry.chemical_compound ,Microscopy, Electron, Transmission ,Leukocytes ,medicine ,Humans ,Immunology and Allergy ,Propidium iodide ,education ,education.field_of_study ,medicine.diagnostic_test ,Cell Membrane ,Flow Cytometry ,Cell counting ,Molecular biology ,medicine.anatomical_structure ,chemistry - Abstract
In this report, we have evaluated the effects of a TransFixR-based stabilisation technique on leukocyte scatter characteristics, immunophenotyping, membrane permeability, absolute cell counting and morphology to extend previously reported flow cytometric data focused on the lymphocyte population. We show that scatter characteristics, immunophenotyping and absolute cell counting are well preserved, particularly in the lymphocyte population. Nevertheless, a general increase in membrane permeability, evaluated by propidium iodide (PI) uptake, was observed in TransFixR-treated leukocyte subsets. Ultrastructural observations show selective morphological preservation (up to 10 days of storage) of lymphocytes and, to a lesser extent, of monocytes. In contrast, granulocytes have necrosis-like features, although the plasma membrane seems well preserved. Therefore, electron microscopy observations reflect modifications induced in different cell populations as evidenced by flow cytometry (FC). The data indicate that this short-term stabilisation method is particularly suitable for the analysis of human lymphocytes and it is a good procedure for quality control programmes for inter- and intra-laboratory performance evaluation; good results are obtained with respect to antigen definition and absolute cell counting procedures. Any apoptotic pathways in leukocyte subsets are blocked for at least 10 days.
- Published
- 2004
34. Receptor tyrosine kinases in normal and malignant haematopoiesis
- Author
-
John T. Reilly
- Subjects
Mutation ,Leukemia ,medicine.medical_treatment ,Receptor Protein-Tyrosine Kinases ,Hematology ,RTK class III ,Biology ,medicine.disease_cause ,Receptor tyrosine kinase ,Hematopoiesis ,Targeted therapy ,Haematopoiesis ,Transmembrane domain ,Oncology ,Cancer research ,biology.protein ,medicine ,Humans ,Enzyme Inhibitors ,Receptor ,Tyrosine kinase - Abstract
Haematopoiesis is controlled by a number of growth factors and cytokines, a number of which act through binding to high-affinity receptor tyrosine kinases (RTKs). Approximately 20 different RTK classes have been identified, all of which share a similar structure that includes a ligand binding extracellular domain, a single transmembrane domain and an intracellular tyrosine kinase domain. Recent studies have linked an increasing number of mutations in the RTKs to the pathogenesis of both acute and chronic leukaemia. For example, the FLT3 receptor, a RTK class III, is the most commonly mutated gene in acute myeloid leukaemia, while c-kit mutations are strongly linked to the development of mast cell malignancy. This review summarizes the RTK classes that are known to be expressed on normal haematopoietic tissue and highlights the many 'gain-of-function' mutations involved in leukaemogenesis. It is to be hoped that this knowledge will provide important new insights for targeted therapy in leukaemia.
- Published
- 2003
35. Flow rate calibration II: A clinical evaluation study using PanLeucoGating as a single-platform protocol
- Author
-
Vivian Granger, David Barnett, Karen Goodfellow, John T. Reilly, Ian Storie, Liam Whitby, and Alex Sawle
- Subjects
CD4-Positive T-Lymphocytes ,Quality Control ,Accuracy and precision ,Calibration (statistics) ,Biophysics ,Human immunodeficiency virus (HIV) ,HIV Infections ,Biology ,medicine.disease_cause ,Sensitivity and Specificity ,Pathology and Forensic Medicine ,Endocrinology ,medicine ,Enumeration ,Animals ,Humans ,Protocol (science) ,Disease progression ,Cell Biology ,Hematology ,Flow Cytometry ,CD4 Lymphocyte Count ,Evaluation Studies as Topic ,Calibration ,Immunology ,Algorithm ,Cytometry ,Clinical evaluation - Abstract
Background CD4+ T-lymphocyte enumeration is vital for monitoring disease progression in individuals positive for the human immunodeficiency virus (HIV), and as a result, there is a need to develop cost-effective protocols that provide accuracy, precision, and affordability. Recently, PanLeucoGating has been shown to fulfill these requirements; however, although comparable to state-of-the-art single-platform protocols (SP), there is still a requirement for an accurate total white cell count. To overcome this limitation, we recently developed a flow-rate based calibration method that enables the PanLeucoGating protocol to be used as a SP approach, and in this study show that this approach can be used for CD4+ T-lymphocyte enumeration. Methods A total of 113 HIV samples were analyzed using three protocols: (a) state-of-the art SP bead-based method (MultiSet; predicate protocol), (b) PanLeucoGating protocol used as a dual-platform (DP) approach, and (c) the newly developed flow rate–based SP approach. We demonstrate that flow rate calibration can be achieved easily and that the method is highly comparable to the state-of-the-art SP method. Results A high correlation was observed between the predicate protocol and the SP PanLeucoGating approach over the whole range of CD4 counts tested (r2 = 0.9928; bias 8 cells/μl), including the clinically relevant range (e.g., 0–200 CD4 cells/μl; bias 0 cells/μl). For batched samples, the cost of providing a CD4+ T-lymphocyte count was reduced to approximately US $1. Conclusions The SP PanLeucoGating is a cost-effective approach to CD4+ T-lymphocyte enumeration that maintains accuracy and precision. Cytometry Part B (Clin. Cytometry) 55B:8–13, 2003. © 2003 Wiley-Liss, Inc.
- Published
- 2003
36. Mutational analysis of class III receptor tyrosine kinases (C-KIT, C-FMS, FLT3) in idiopathic myelofibrosis
- Author
-
G. Wilson, Ian R. Peake, Faisel M. Abu-Duhier, Mamdooh Gari, Rory S. Care, Anne Goodeve, and John T. Reilly
- Subjects
Genetics ,Mutation ,hemic and immune systems ,Hematology ,RTK class III ,Biology ,medicine.disease_cause ,Molecular biology ,law.invention ,Exon ,genomic DNA ,law ,embryonic structures ,DNA Mutational Analysis ,Fms-Like Tyrosine Kinase 3 ,medicine ,Gene ,Polymerase chain reaction - Abstract
Genomic DNA from patients with idiopathic myelofibrosis (IMF) was screened by polymerase chain reaction (PCR) and conformation sensitive gel electrophoresis (CSGE) for mutations in the C-KIT gene (60 patients), as well as the C-FMS and FLT3 genes (40 patients). Intronic primers were used to amplify the entire coding region of both the C-KIT and C-FMS genes, and selected regions of the FLT3 gene. CSGE and direct DNA sequencing detected all previously reported as well as several novel polymorphisms in each of the genes. A novel c-fms exon 9 mutation (Gly413Ser) was detected in two patients. Its functional significance remains to be determined. The c-kit mutation Asp52Asn, previously described in two of six IMF patients in Japan, was not detected in this study. In addition, the reported c-fms mutations involving codons 301 and 969 were not identified. Therefore, in contrast to acute myeloid leukaemia, mutations in RTKs class III do not appear to play a significant pathogenetic role in idiopathic myelofibrosis.
- Published
- 2003
37. Perfect count: A novel approach for the single platform enumeration of absolute CD4+ T-lymphocytes
- Author
-
Janet Peel, Vivian Granger, Rosalie Ward, David Barnett, Liam Whitby, Theresa Smart, Karen Goodfellow, John T. Reilly, Alex Sawle, and Ian Storie
- Subjects
CD4-Positive T-Lymphocytes ,Multiset ,Reference counting ,Sample (material) ,Disease progression ,Biophysics ,Reproducibility of Results ,HIV Infections ,Cell Biology ,Hematology ,T lymphocyte ,Biology ,Flow Cytometry ,Sensitivity and Specificity ,Pathology and Forensic Medicine ,Endocrinology ,Key terms ,Immunology ,Enumeration ,Humans ,Lymphocyte Count ,Bland–Altman plot ,Algorithm - Abstract
Background: The derivation of reliable CD4 T lymphocyte counts is vital for the monitoring of disease progression and therapeutic effectiveness in HIV individuals. Flow cytometry has emerged as the method of choice for CD4 T lymphocyte enumeration, with single-platform technology, coupled with reference counting beads, fast becoming the “gold standard.” However, although single-platform, bead-based, sample acquisition requires the ratio of beads to cells to remain unchanged, there is no available method, until recently, to monitor this. Methods: Perfect Count beads have been developed to address this issue and to incorporate two bead populations, with different densities, to allow the detection of inadequate mixing. Comparison of the relative proportions of both beads with the manufacture’s defined limits enables an internal QC check during sample acquisition. In this study, we have compared CD4 T lymphocyte counts, obtained from 104 HIV patients, using TruCount beads with MultiSet software (defined as the predicated method) and the new Perfect Count beads, incorporating an in house sequential gating strategy. Results: We have demonstrated an excellent degree of correlation between the predicate method and the Perfect Count system (r 2 0.9955; Bland Altman bias 27 CD4 T lymphocytes/l). Conclusions: The Perfect Count system is a robust method for performing single platform absolute counts and has the added advantage of having internal QC checks. Such an approach enables the operator to identify potential problems during sample preparation, acquisition and analysis. © 2003 Wiley-Liss, Inc. Key terms: flow cytometry; single platform; absolute counts; quality control; CD4 T lymphocytes
- Published
- 2003
38. Class III receptor tyrosine kinases: role in leukaemogenesis
- Author
-
John T. Reilly
- Subjects
chemistry.chemical_classification ,Platelet-derived growth factor ,Hematology ,RTK class III ,Class iii ,Biology ,medicine.disease_cause ,Receptor tyrosine kinase ,chemistry.chemical_compound ,Enzyme ,chemistry ,Mitogen-activated protein kinase ,ROR1 ,Cancer research ,biology.protein ,medicine ,Carcinogenesis - Published
- 2002
39. Revised guideline on immunophenotyping in acute leukaemias and chronic lymphoproliferative disorders
- Author
-
David C. Linch, David Barnett, Barbara J. Bain, John T. Reilly, and Estella Matutes
- Subjects
medicine.medical_specialty ,Blood Cells ,Leukemia ,business.industry ,Task force ,Antibodies, Monoclonal ,Lymphoproliferative disorders ,Hematology ,Acute leukaemias ,Guideline ,medicine.disease ,Lymphoproliferative Disorders ,Immunophenotyping ,Specimen Handling ,Chronic disease ,Antigens, Neoplasm ,Bone Marrow ,Acute Disease ,Chronic Disease ,Immunology ,Humans ,Medicine ,business ,Intensive care medicine - Abstract
Guideline issued by the General Haematology Task Force of the British Committee for Standards inHaematology (BCSH), British Society of Haematology, 2 Carlton House Terrace, LondonIn 1994, the General Haematology Task Force (GHTF) ofthe British Committee for Standards in Haematology(BCSH) published two guidelines on immunophenotypingin acute leukaemias (General Haematology Task Force ofthe BCSH, 1994a) and chronic lymphoproliferative disor-ders (General Haematology Task Force of the BCSH,1994b).Over the past five years there have been major technicaladvances in this field (Table 1). In addition, some newmonoclonal antibodies (McAb) have been shown to behighly specific for the lymphoid or myeloid lineages,respectively, and their use is therefore recommended inthe diagnosis of acute leukaemias.This revised guideline will focus on new techniques andreagents and define new panels of McAb recommended forlineage assignment in acute leukaemias and for thecharacterization of chronic lymphoproliferative disorders.This guideline does not consider in any detail the detectionof minimal residual disease, the diagnosis of biphenotypicacute leukaemias or the evaluation of stem cell harvest.Nor does it address the selection of antibodies fortherapeutic purposes. Furthermore, the antibody panelsoutlined here are not absolute and other McAb may beequally appropriate.This guideline was written by a working partycomprised of five members selected by the BCSH becauseof their expertise in this field. In addition the draftguideline was reviewed by eight UK laboratories in theforefront of the field of immunophenotyping. Theircomments were discussed and incorporated into the draftwhen appropriate. The final manuscript was approved byall members of the BCSH and by the Committee of theBritish Society of Haematology (BSH). The guidelinerepresents the opinion of the BCSH Task Force and hasbeen approved by the BSH.
- Published
- 2002
40. Cytogenetic and Molecular Genetic Aspects of Idiopathic Myelofibrosis
- Author
-
John T. Reilly
- Subjects
Chromosome Aberrations ,medicine.medical_specialty ,Idiopathic myelofibrosis ,Chromosomes, Human, Pair 13 ,Chromosomes, Human, Pair 20 ,Cytogenetics ,Aneuploidy ,Trisomy ,Hematology ,General Medicine ,Biology ,medicine.disease ,Pathogenesis ,Chronic myeloproliferative disorders ,Chromosomes, Human, Pair 1 ,Primary Myelofibrosis ,medicine ,Cancer research ,Humans ,Myelofibrosis ,Chromosomes, Human, Pair 8 - Abstract
Idiopathic myelofibrosis is a chronic myeloproliferative disorder in which the characteristic fibroblast proliferation is thought to be a secondary phenomenon resulting from the inappropriate release of megakaryocyte- and/or monocyte-derived growth factors, including PDGF, TGF-β, bFGF and calmodulin. In contrast, the haematopoietic cells are clonal, although the underlying pathogenetic mechanisms remain essentially unknown. Cytogenetic studies have highlighted that 13q–, 20q–, +8 and abnormalities of chromosomes 1, 7 and 9 constitute more than 80% of the chromosomal changes. A third of idiopathic myelofibrosis cases have abnormal karyotypes at diagnosis, a figure that increases if follow-up analyses are performed. Evolution to more complex karyotypes may accompany clinical progression, with abnormalities increasing to around 90% following acute leukaemic transformation. Cytogenetic abnormalities have been associated with prognosis and to a lack of treatment response to androgens. Oncogene mutations are rare and include point mutations in N-RAS, c-KIT and TP53.
- Published
- 2002
41. CHRONIC NEUTROPHILIC LEUKAEMIA: A DISTINCT CLINICAL ENTITY?
- Author
-
John T. Reilly
- Subjects
Pathology ,medicine.medical_specialty ,Chronic neutrophilic leukaemia ,business.industry ,Diagnostico diferencial ,Chronic neutrophilic leukemia ,Hematology ,medicine.disease ,LEUKAEMOID REACTION ,Myelogenous ,Leukemia ,Immunology ,Medicine ,business ,Leukemoid reaction - Published
- 2002
42. Acute myeloid leukaemia associated with Muir-Torre variant of hereditary non-polyposis colon cancer (HNPCC): implications for inherited and acquired mutations in DNA mismatch repair genes
- Author
-
Philipa J. Kelsey, John A. Snowden, Yusof Ezaydi, Chris D. Dalley, Jackie Cook, Imran K. Tailor, and John T. Reilly
- Subjects
Oncology ,medicine.medical_specialty ,business.industry ,Colorectal cancer ,Hematology ,medicine.disease ,Hsc transplantation ,Internal medicine ,Cancer research ,Medicine ,DNA mismatch repair ,Msh2 gene ,Myeloid leukaemia ,business ,Gene - Published
- 2011
43. Use of JAK inhibitors in the management of myelofibrosis: a revision of the British Committee for Standards in Haematology Guidelines for Investigation and Management of Myelofibrosis 2012
- Author
-
John T. Reilly, Adam J. Mead, Mary Frances McMullin, Philip A. Beer, Mallika Sekhar, G. Mikhaeel, Andrew S Duncombe, Anthony R. Green, Claire N. Harrison, Steven Knapper, Ruben A. Mesa, Eibhlin Conneally, Marie H. Gilleece, and Nauman Butt
- Subjects
medicine.medical_specialty ,Maximum Tolerated Dose ,Myeloproliferative disease ,Recurrence ,Internal medicine ,Nitriles ,medicine ,Humans ,Myelofibrosis ,Intensive care medicine ,Protein Kinase Inhibitors ,Hematology ,business.industry ,Anemia ,Janus Kinase 1 ,Janus Kinase 2 ,medicine.disease ,Thrombocytopenia ,Pyrimidines ,Primary Myelofibrosis ,Splenomegaly ,Immunology ,Pyrazoles ,Symptom Assessment ,business - Published
- 2014
44. Affordable CD4+ T cell counts by flow cytometry
- Author
-
David Barnett, llesh V Jani, Fred Mhalu, Debbie K. Glencross, George Janossy, Arabjan Iqbal, Gunnel Biberfeld, Vivian Granger, Lesley Scott, John T. Reilly, and Eligius Lyamuya
- Subjects
Resource poor ,Reproducibility ,medicine.diagnostic_test ,Cd4 t cell ,business.industry ,T cell ,Immunology ,Flow cytometry ,medicine.anatomical_structure ,Animal science ,Linear regression ,medicine ,Immunology and Allergy ,business ,Transfix ,Whole blood - Abstract
We tested the feasibility and precision of affordable CD4+ T cell counting in resource-poor settings using a recently standardised fixative, TransFix in whole blood (WB) by flow cytometry (FCM). The precision of the assays was established under optimal conditions for single-platform FCM such as the volumetric CytoronAbsolute and the bead-based FACSCan. Fresh WB samples from HIV-seropositive and seronegative patients were tested in Tanzania and South Africa, fixed and sent to the UK for reanalysis 7 days later. Correlation, bias and limits of agreements were analysed by linear regression and the Bland-Altman test. Absolute CD4+ T cell counts remained stable for at least 10 days when TransFix was added to WB in 1:10 dilution at 20-25 degrees C, and for 7 days when added in 1:10 or 1:5 dilution to samples stored to mimic 'tropical' conditions at 37 degrees C. Higher temperatures such as 42 degrees C were tolerated for only short periods since the recovery had decreased to 63% by day 3. The reproducibility of lymphocyte subset analysis remained unchanged by TransFix with coefficient of variations
- Published
- 2001
45. Identification of novel FLT-3 Asp835 mutations in adult acute myeloid leukaemia
- Author
-
Faisel M. Abu-Duhier, G A Wilson, Rory S. Care, John T. Reilly, Ian R. Peake, and Anne Goodeve
- Subjects
Genetics ,Exon ,genomic DNA ,law ,Point mutation ,Fms-Like Tyrosine Kinase 3 ,Hematology ,Biology ,Allele frequency ,Gene ,Polymerase chain reaction ,DNA sequencing ,law.invention - Abstract
Genomic DNA from 97 cases of adult de novo acute myeloid leukaemia (AML) was screened using polymerase chain reaction (PCR) and conformation-sensitive gel electrophoresis (CSGE) for FLT3 exon 20 mutations. Initial sequencing of four cases, representing the spectrum of CSGE abnormalities, revealed changes affecting codon Asp835 in three cases and also an intron 20 A to G change. In order to identify all possible Asp835 alterations, as well as the frequency of the intronic change nucleotide 2541 + 57 AG, the patient PCR products were digested with EcoRV and NlaIII respectively. Seven cases (7·2%) possessed a mutation affecting Asp835; these were identified, following DNA sequencing, as Asp835Tyr (n = 5), Asp835His (n = 1) and Asp835del (n = 1). Alterations affecting Asp835 were not found in 80 normal control DNA samples. In contrast, the nucleotide 2541 + 57 AG change was shown to be a polymorphism, with an allelic frequency of 0·24 for the G and 0·76 for the A allele. This study reports, for the first time, point mutations in the human FLT3 gene that, because of their homology with other class III receptor tyrosine kinase mutations, probably result in constitutive activation of the receptor.
- Published
- 2001
46. Interferon α and zidovudine therapy in adult T-cell leukaemia lymphoma: response and outcome in 15 patients
- Author
-
Graham P. Taylor, John T. Reilly, M. Hamblin, N. Mir, Stephen M. Kelsey, Estella Matutes, Jamie Cavenagh, A. Domingo, D. Bareford, and Antonio Pagliuca
- Subjects
medicine.medical_specialty ,business.industry ,Alpha interferon ,Hematology ,medicine.disease ,Gastroenterology ,Organomegaly ,Surgery ,Lymphoma ,Zidovudine ,immune system diseases ,hemic and lymphatic diseases ,Internal medicine ,medicine ,medicine.symptom ,business ,Survival rate ,Survival analysis ,Interferon alfa ,Progressive disease ,medicine.drug - Abstract
Adult T-cell leukaemia lymphoma (ATLL) is an aggressive disease caused by the human T-lymphotropic virus 1 (HTLV-I) with a short survival. Responses to interferon alpha (IFN-alpha) and zidovudine (AZT) have been documented but not with long-term follow-up. We treated 15 ATLL patients with IFN and AZT. Eleven patients had acute ATLL, two had lymphoma and two smouldering ATLL, with progression. The main features were: organomegaly (14), skin lesions (10), high white blood cell (WBC) count (11) and hypercalcaemia (9). Eleven patients had previously received chemotherapy and one had received an autograft. At the time of the study, seven patients had progressive disease and eight were in partial or complete clinical remission. Responses (PR) lasting 2+ to 44+ months were seen in 67%; 26% did not respond (NR) and one patient was not evaluable. Hypercalcaemia predicted a poor outcome but differences were not significant. Eight of the 15 patients have died 3-41 months from diagnosis. Median survival for the 15 patients was 18 months. Survival of the NR ranged from 4 to 20 months; six PR patients are alive 8-82 months from diagnosis. The differences in survival between NR (median: 6 months) and PR (55% of patients alive at 4 years) were statistically significant (P = 0.002). In conclusion, IFN and AZT improves the outcome of ATLL patients and helps maintain responses.
- Published
- 2001
47. Fluorescence in situ hybridization analysis of 25 cases of idiopathic myelofibrosis and two cases of secondary myelofibrosis: monoallelic loss of RB1, D13S319 and D13S25 loci associated with cytogenetic deletion and translocation involving 13q14
- Author
-
Ann E. Watmore, A. Potter, E. J. Sinclair, John T. Reilly, and E. C. Forrest
- Subjects
Genetics ,medicine.medical_specialty ,medicine.diagnostic_test ,Cytogenetics ,Locus (genetics) ,Chromosomal translocation ,Hematology ,Biology ,medicine.disease ,Molecular biology ,Polycythemia vera ,medicine ,Microsatellite ,Myelofibrosis ,Chromosome 13 ,Fluorescence in situ hybridization - Abstract
To identify a commonly deleted region of 13q14 in idiopathic myelofibrosis (IMF), we used fluorescence in situ hybridization analysis to test for deletion of the RB1 and BRCA2 genes, and the microsatellite loci D13S319 and D13S25, in a series of 25 patients. A further two patients with myelofibrosis secondary to polycythaemia vera and essential thrombocythaemia with reciprocal 13q translocations were studied in an attempt to further define the CDR. Twenty out of 21 patients with a cytogenetically normal chromosome 13 failed to show allelic loss with any of the four probes. In contrast, all four cases with cytogenetic deletion of 13q14 and both cases with 13q translocations involving 13q14 exhibited loss of RB1, D13S319 and D13S25. Loss of the BRCA2 locus was present in a single case only. Our results indicate that cryptic deletions of the 13q14 in myelofibrosis are rare. In addition, the genetic loss associated with cytogenetic 13q14 deletions or reciprocal translocations involving 13q14 is large and encompasses the gene-rich region around RB1, D13S319 and D13S25.
- Published
- 2001
48. Low level leucocyte counting: a critical variable in the validation of leucodepleted blood transfusion components as highlighted by an external quality assessment study
- Author
-
David Barnett, Vivian Granger, J. Ginnever, Karen Goodfellow, John T. Reilly, and Liam Whitby
- Subjects
Pathology ,medicine.medical_specialty ,Blood transfusion ,Leucocyte depletion ,Assurance qualite ,business.industry ,medicine.medical_treatment ,Hematology ,Nuclear staining ,Internal medicine ,External quality assessment ,Medicine ,Critical range ,Febrile reactions ,business ,Royaume uni - Abstract
Summary Leucocyte counts of < 5 · 10 6 per blood transfusion product are currently recommended in the UK in order to reduce transfusion-related infections and febrile reactions. Routine leucocyte depletion, however, requires the development of reliable internal and external quality assurance (EQA) programmes. We report preliminary findings from the UK NEQAS for Low-Level Leucocyte Counting from 18 UK Transfusion Centres over a four month period. Data analysis showed that the IMAGN 2000 had the lowest CVs (range 7.5‐36%, mean 16.7) for samples with counts of 5‐30 cells/ll when compared to the flow cytometric (range 13.8‐88%, mean 29.5) and Nageotte methods (range 20.6‐117%, mean 61.8). In addition, laboratories using commercial nuclear stains (LeucoCOUNT TM ) had consistently lower CVs than those using ‘in-house’ propidium iodide staining methods. Important differences in flow cytometric gating strategies were also identified. This study highlights the current variability in low level leucocyte counting, especially within the critical range of 5‐30 cells/ll (equating to < 5 · 10 6 /l). The acceptance of consensus protocols, including gating strategies and nuclear staining techniques, is required to reduce the observed interlaboratory variation. Finally, we demonstrate that stabilized blood preparations can be successfully used to provide a national/international low-level leucocyte EQA scheme.
- Published
- 2001
49. A SECOND CASE OF Hb RENERT [β133(H11)Val → Ala]
- Author
-
Paula Forrest, John T. Reilly, Ian R. Peake, Sally Heppinstall, David C. Rees, G. Wilson, Anne Goodeve, Neil Porter, and Brian N. Green
- Subjects
Male ,Spectrometry, Mass, Electrospray Ionization ,Chemistry ,Hemoglobins, Abnormal ,Point mutation ,DNA Mutational Analysis ,Biochemistry (medical) ,Clinical Biochemistry ,Amino acid substitution ,Hematology ,Middle Aged ,Phenotype ,Molecular biology ,Amino Acid Substitution ,Humans ,Point Mutation ,Chromatography, High Pressure Liquid ,Genetics (clinical) ,Hematuria - Published
- 2001
50. Cytogenetically cryptic AML1-ETO and CBFβ-MYH11 gene rearrangements: incidence in 412 cases of acute myeloid leukaemia
- Author
-
G. Wilson, David W. Rowe, J. Bryon, Nick Bown, Simon Cotterill, Michael J. Griffiths, Ann E. Watmore, Elisabeth Vandenberghe, Fiona M. Ross, John T. Reilly, D. J. McMullan, S. J. Vickers, and David J. Bunyan
- Subjects
Incidence (epidemiology) ,MYH11 ,Cancer research ,Hematology ,Myeloid leukaemia ,Biology ,Gene ,Aml1 eto - Published
- 2000
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