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Sea ice continues to decline across many regions of the Arctic, with remaining ice becoming increasingly younger and more dynamic. These changes alter the habitats of microbial life that live within the sea ice, which support healthy functioning of the marine ecosystem and provision of resources for human-consumption, in addition to influencing biogeochemical cycles (e.g. air–sea CO2 exchange). With the susceptibility of sea ice ecosystems to climate change, there is a pressing need to fill knowledge gaps surrounding sea ice habitats and their microbial communities. Of fundamental importance to this goal is the development of new methodologies that permit effective study of them. Based on outcomes from the DiatomARCTIC project, this paper integrates existing knowledge with case studies to provide insight on how to best document sea ice microbial communities, which contributes to the sustainable use and protection of Arctic marine and coastal ecosystems in a time of environmental change. Supplementary Information The online version contains supplementary material available at 10.1007/s13280-021-01658-z.

The carbonate chemistry of sea ice is known to play a role in global carbon cycles, but its importance is uncertain in part due to disparities in reported results. Variability in physical and biological drivers is usually invoked to explain differences between studies. In the Canadian Arctic Archipelago, “invisible polynyas” – areas of strong currents, thin ice, and potentially high biological productivity – are examples of extreme spatial variability. We used an invisible polynya as a natural laboratory to study the effects of inferred initial ice formation conditions, ice growth rate, and algal biomass on the distribution of carbonate species by collecting enough cores to perform a statistical comparison between sites located within, and just outside of, a polynya near Iqaluktuttiaq (Cambridge Bay, Nunavut, Canada). At both sites, the uppermost 10 cm ice horizon showed evidence of CO2 off-gassing, while carbonate distributions in the middle and bottommost 10 cm horizons largely followed the salinity distribution. In the polynya, the upper ice horizon had significantly higher bulk total inorganic carbon (TIC), total alkalinity (TA), and salinity potentially due to freeze-up conditions that favoured frazil ice production. The middle ice horizons were statistically indistinguishable between sites, suggesting that ice growth rate is not an important factor for the carbonate distribution under mid-winter conditions. The thicker (non-polynya) site experienced higher algal biomass, TIC, and TA in the bottom horizon. Carbonate chemistry in the bottom horizon could largely be explained by the salinity distribution, with the strong currents at the polynya site potentially playing a role in desalinization; biology appeared to exert only a minor control, with some evidence that the ice algae community was net heterotrophic. We did see evidence of calcium carbonate precipitation but with little impact on the TIC:TA ratio and little difference between sites. Because differences were constrained to relatively thin layers at the top and bottom, vertically averaged values of TIC, TA, and especially the TIC:TA ratio were not meaningfully different between sites. This provides some justification for using a single bulk value for each parameter when modelling sea ice effects on ocean chemistry at coarse resolution. Exactly what value to use (particularly for the TIC:TA ratio) likely varies by region but could potentially be approximated from knowledge of the source seawater and sea ice salinity. Further insights await a rigorous intercomparison of existing data.

International audience; One of the most striking ecological divides on Earth is between marine and nearby freshwater environments, as relatively few taxa can move between the two. Microbial eukaryotes contribute to biogeochemical and energy cycling in both fresh and marine waters, with little species overlap between the two ecosystems. Arctic and sub-Arctic marine systems are relatively fresh compared to tropical and temperate systems, but details of microbial eukaryote communities along river-to-sea transitions are poorly known. To bridge this knowledge gap, we investigated three river-to-sea transitions (Nelson, Churchill, and Great Whale Rivers) in sub-Arctic Hudson Bay through 18S rRNA amplicon sequencing to identify microbial eukaryotes along the salinity and biogeochemical gradients. Salinity acted as the principal dispersal barrier preventing freshwater microorganisms from colonizing marine coastal waters, with microbial eukaryote communities of the three rivers clustering together. Just offshore, communities clustered by coastal regions associated with nutrient concentrations. Analysis of indicator species revealed that communities in the nitrate-depleted coastal water off the Churchill and Great Whale Rivers were dominated by heterotrophic taxa and small photosynthetic protists. In contrast, the Nelson offshore community was characterized by a high proportion of the diatom Rhizosolenia. A distinct community of heterotrophic protists was identified in the three estuarine transition zones, suggesting specialized estuarine communities. Such specialization was most marked in the Nelson River system that was sampled more intensely and showed estuarine circulation.The autochthonous community was composed of the bacterial grazers Katablepharis, Mataza, and Cryothecomonas, as well as brackish species of the diatoms Skeletonema and Thalassiosira. These findings suggest that flow regulation on the Nelson River that modifies estuarine circulation would affect estuarine community composition and distribution in the transition zone.

A new species of monstrilloid copepod, Monstrillopsis planifrons sp. n., is described from an adult female that was collected beneath snow-covered sea ice during the 2014 Ice Covered Ecosystem – CAMbridge bay Process Study (ICE-CAMPS) in Dease Strait of the Canadian Arctic Archipelago. Currently, up to six species of this order are known to occur in polar latitudes. The new species described herein shares similarities with Monstrillopsis dubia (Scott, 1904) but differs in its body proportions and cephalothorax ornamentation; the cephalothorax is covered by minute scattered papillae on dorsal and ventral surfaces; this species has a reduced fifth leg endopod, fifth leg exopod armed with three setae, antennule with fused segments 3–4, and the genital double-somite bears unique posterolateral processes. This is the second species of this genus recorded in the Arctic, after Monstrillopsis ferrarii (Suárez-Morales & Ivanenko, 2004), described from the White Sea, and is the first record of Monstrillopsis in Canadian waters. With the addition of this new species and the recognition of Monstrillopsis bernardensis comb. nov. as a member of this genus, the number of nominal species is now 15. Overall, this genus has a tendency to be distributed in temperate and cold waters, while only three species have been found in tropical and subtropical latitudes.

The abundance of diatoms and heterotrophic bacteria in sea ice rapidly increases during the spring. However, the number and activity of these microorganisms vary with changing environmental conditions and potentially the taxonomic composition of the algal community during this time. In this study, we assessed the spring bottom-ice community composition in Dease Strait, Nunavut, and investigated potential controls of chlorophyll a (chl a), particulate organic carbon (POC), cell abundance, and production from early March until early June. We found that using flow cytometry to estimate photosynthetic nanoeukaryote (2–20 μm) abundance gave results very similar to light microscopy counts, except when pennate diatoms with lengths close to 20 μm, the maximum size detected by flow cytometry, were abundant. Using the average abundance of nanoeukaryotes from the two methods, we documented a change in the size of cells comprising the ice algal community over the spring, from largely pico- (

During the Norwegian young sea ICE expedition (N-ICE2015) from January to June 2015 the pack ice in the Arctic Ocean north of Svalbard was studied during four drifts between 83° and 80° N. This pack ice consisted of a mix of second-year, first-year and young ice. The physical properties and ice algal community composition was investigated in the three different ice types during the winter-spring-summer transition. Our results indicate that algae remaining in sea ice that survived the summer melt season are subsequently trapped in the upper layers of the ice column during winter and may function as an algal seed repository. Once the connectivity in the entire ice column is established, as a result of temperature-driven increase in ice porosity during spring, algae in the upper parts of the ice are able to migrate towards the bottom and initiate the ice-algal spring bloom. Furthermore, this algal repository might seed the bloom in younger ice formed in adjacent leads. This mechanism was studied in detail for the often dominating ice diatom Nitzschia frigida.The proposed seeding mechanism may be compromised due to the disappearance of older ice in the anticipated regime shift towards a seasonally ice-free Arctic Ocean.

In spring 2015, we observed an extensive phytoplankton bloom of Phaeocystis pouchetii, with chlorophyll a concentrations up to 7.5 mg m−3, under compact snow-covered Arctic sea ice at 80-81˚N during the Norwegian young sea ICE (N-ICE2015) expedition. We investigated the influence of the under-ice bloom on inherent optical properties (IOPs) of the upper ocean. Absorption and scattering in the upper 20 m of the water column at visible wavebands increased threefold and tenfold, respectively, relative to pre-bloom conditions. The scattering-to-absorption ratio during the Phaeocystis under-ice bloom was higher than in previous Arctic studies investigating diatom blooms. During the bloom, absorption by colored dissolved organic matter (at 375 nm), seemingly of autochthonous origin, doubled. Total absorption by particles (at 440 nm), dominated by phytoplankton (> 90%), increased tenfold. Measured absorption and scattering in the water were used as inputs for a 1D coupled atmosphere-ice-ocean radiative transfer model (AccuRT) to investigate effects of altered IOPs on the under-ice light field. Multiple scattering between sea ice and phytoplankton in the ocean led to an increase in scalar irradiance in the photosynthetically active radiation range (Eo(PAR)) at the ice-ocean interface by 6–7% compared to pre-bloom situation. This increase could have a positive feedback on ice-algal and under-ice phytoplankton productivity. The ratio between Eo(PAR) and downwelling planar irradiance (Ed(PAR)) below sea ice reached 1.85. Therefore, the use of Ed(PAR) might significantly underestimate the amount of PAR available for photosynthesis underneath sea ice. Our findings could help to improve light parameterizations in primary production models.

A number of common sterols were identified in sea ice diatoms from the Arctic and the Antarctic. The main sterols in floating sea ice algal aggregates collected from Resolute Passage (Canadian Arctic) and Nansen Basin (North Svalbard) in 2012 were 22E-dehydrocholesterol, cholesterol, epi-brassicasterol, 24-methylenecholesterol and 24-ethylcholesterol, although the distribution varied between the two locations, likely reflecting compositional differences in diatom taxa. The three major sterols in cells of Berkeleya adeliensis picked from a melted sea ice core collected from Ryder Bay in the Antarctic Peninsula in 2014, were 24-ethylcholesterol, cholesterol and 22E-dehydrocholesterol. We suggest that certain sea ice diatoms may thus contribute to the sedimentary budget of common sterols in seasonally sea ice-covered locations following ice melt.

Sea ice algae are an important contributor of primary production in the Arctic ecosystem. Within the bottom-ice environment, access to nutrients from the underlying ocean is a major factor controlling production, phenology, and taxonomic composition of ice algae. Previous studies have demonstrated that tides and currents play an important role in driving the flux of nutrients to bottom-ice algal communities when biological demand during the spring bloom is high. In this study we investigate how surface currents under landfast first-year ice influence nutrient supply based on stoichiometric composition, algal chlorophyll a biomass and species composition during spring 2016, in Dease Strait, Nunavut. Stronger water dynamics over a shoaled and constricted strait dominated by tidal currents (tidal strait) supported turbulent flow more than 85% of the deployment duration in comparison to outside the tidal strait in an embayment where turbulent flow was only evidenced a small percentage (

International audience

Light is a major environmental cue affecting various physiological and metabolic processes in plants. Although plant photoreceptors are well characterized, the mechanisms by which light regulates downstream responses are less clear. In Arabidopsis thaliana, the accumulation of photoprotective anthocyanin pigments is light dependent, and the R2R3 MYB transcription factor MYB75/PAP1 regulates anthocyanin accumulation. Here, we report that MYB75 interacts with and is phosphorylated by MAP KINASE4 (MPK4). Their interaction is dependent on MPK4 kinase activity and is required for full function of MYB75. MPK4 can be activated in response to light and is involved in the light-induced accumulation of anthocyanins. We show that MPK4 phosphorylation of MYB75 increases its stability and is essential for light-induced anthocyanin accumulation. Our findings reveal an important role for a MAPK pathway in light signal transduction.

Genetics studies the structure/function of genes via the characterization of their mutant phenotypes. In plants, a readily scorable mutant phenotype comprises macroscopic lesions symptomatic of disease in the absence of pathogens. Such mutants therefore exhibit autoimmune phenotypes. Many of these mutants are considered to be associated with immunity and the corresponding genes have been described as 'negative regulators' of immunity and/or cell death. Pathogens deliver effectors into host cells to increase infectivity by modifying or removing host proteins. Plants detect effectors via nucleotide-binding, leucine-rich repeat (NLR) immune receptors, which monitor host effector targets. In response to effector-mediated target tampering, NLR proteins potentiate immunity. The guard hypothesis proposes that NLRs 'guard' host 'guardees' targeted by pathogen effectors. An obvious corollary to this guard model is that forms of plant autoimmunity are a result of inappropriate NLR protein activation. In this review, we discuss what is known about some of the 'negative regulators' of immunity, and propose simple strategies that may help to characterize autoimmune mutants.

Marine ecosystems at high latitudes are characterized by extreme seasonal changes in light conditions, as well as a limited period of high primary production during spring and early summer. As light returns at the end of winter to Arctic ice-covered seas, a first algal bloom takes place in the bottom layer of the sea ice. This bottom ice algae community develops through three distinct phases in the transition from winter to spring, starting with phase I, a predominantly net heterotroph community that has limited interaction with the pelagic or benthic realms. Phase II begins in the spring once light for photosynthesis becomes available at the ice bottom, although interaction with the water column and benthos remains limited. The transition to the final phase III is then mainly driven by a balance of atmospheric and oceanographic forcing that induce structural changes in the sea ice and ultimately the removal of algal biomass from the ice. Due to limited data availability an incomplete understanding exists of all the processes determining ice algal bloom phenology and the considerable geographic differences in sympagic algal standing stocks and primary production. We present here the first pan-Arctic compilation of available time-series data on vernal sea ice algal bloom development and identify the most important factors controlling its development and termination. Using data from the area surrounding Resolute Bay (Nunavut, Canada) as an example, we support previous investigations that snow cover on top of the ice influences sea ice algal phenology, with highest biomass development, but also earliest termination of blooms, under low snow cover. We also provide a pan-Arctic overview of sea ice algae standing stocks and primary production, and discuss the pertinent processes behind the geographic differences we observed. Finally, we assess potential future changes in vernal algal bloom phenology as a consequence of climate change, including their importance to different groups of grazers.

The Marginal Ice Zone (MIZ) of the Arctic Ocean is changing rapidly due to a warming Arctic climate with commensurate reductions in sea ice extent and thickness. This Pan-Arctic review summarizes the main changes in the Arctic ocean–sea ice–atmosphere (OSA) interface, with implications for primary- and secondary producers in the ice and the underlying water column. Changes in the Arctic MIZ were interpreted for the period 1979–2010, based on best-fit regressions for each month. Trends of increasingly open water were statistically significant for each month, with quadratic fit for August–November, illustrating particularly strong seasonal feedbacks in sea-ice formation and decay. Geographic interpretations of physical and biological changes were based on comparison of regions with significant changes in sea ice: (1) The Pacific Sector of the Arctic Ocean including the Canada Basin and the Beaufort, Chukchi and East Siberian seas; (2) The Canadian Arctic Archipelago; (3) Baffin Bay and Hudson Bay; and (4) the Barents and Kara seas. Changes in ice conditions in the Barents sea/Kara sea region appear to be primarily forced by ocean heat fluxes during winter, whereas changes in the other sectors appear to be more summer–autumn related and primarily atmospherically forced. Effects of seasonal and regional changes in OSA-system with regard to increased open water were summarized for photosynthetically available radiation, nutrient delivery to the euphotic zone, primary production of ice algae and phytoplankton, ice-associated fauna and zooplankton, and gas exchange of CO2. Changes in the physical factors varied amongst regions, and showed direct effects on organisms linked to sea ice. Zooplankton species appear to be more flexible and likely able to adapt to variability in the onset of primary production. The major changes identified for the ice-associated ecosystem are with regard to production timing and abundance or biomass of ice flora and fauna, which are related to regional changes in sea-ice conditions.