Search

Over the last two decades, popular opinion about prevailing conditions in the mid-Proterozoic deep ocean has evolved from fully oxygenated to globally euxinic (sulfidic) to a more heterogeneous, stratified water column with localized pockets of euxinia existing in predominantly iron-rich (ferruginous) deep waters. The Animikie Basin in the Lake Superior region has been essential in shaping our view of marine redox evolution over this time period. In this study, we present a multi-proxy paleoredox investigation of previously unanalyzed strata of the late Paleoproterozoic Animikie Basin using drill cores through the ~1.85 Ga Stambaugh Formation (Paint River Group) in the Iron River-Crystal Falls district of the Upper Peninsula of Michigan, USA. Based on previous tectonic reconstructions and analysis of sedimentary regimes, the Iron River-Crystal Falls section captures strata from among the deepest-water facies of the Animikie Basin. In contrast to previous work on sedimentary rocks in this basin, we find evidence from iron speciation, trace metal, and Mo isotope data for episodes of at least local deep-water oxygenation within a basin otherwise dominated by ferruginous and euxinic conditions. While trace-metal enrichments and iron speciation data suggest predominantly anoxic conditions, the occurrence of Mn-rich intervals (up to 12.3 wt% MnO) containing abundant Mn-Fe carbonate, and a wide range of Mo isotope data with extremely negative values (δ98/95Mo = −1.0 to +1.1‰), record the shuttling of Mn-oxides from surface waters through oxic or suboxic waters to the sediment-water interface. We propose that such conditions are analogous to those of locally restricted modern and Holocene basins in the Baltic Sea, which receive episodic inflow of oxygenated water, producing similar geochemical signatures to those observed for the Animikie Basin. We argue that the mid-Proterozoic was characterized by a lack of a strong redox buffer (low sulfide, ferrous iron, and oxygen contents), and thus was vulnerable to dramatic, and at least local, redox shifts—including briefly oxygenated bottom waters. A refined view of the mid-Proterozoic ocean is emerging: one that was still predominantly anoxic, but marked by regional heterogeneities and short-term redox variability that may, in part, reflect a transitional state between prevailingly anoxic Archean and predominantly oxic Phanerozoic oceans.

The occurrence of coesite in suevites from the Chesapeake Bay impact structure is confirmed within a variety of textural domains in situ by Raman spectroscopy for the first time and in mechanically separated grains by X-ray diffraction. Microtextures of coesite identified in situ investigated under transmitted light and by scanning electron microscope reveal coesite as micrometer-sized grains (1–3 μm) within amorphous silica of impact-melt clasts and as submicrometer-sized grains and polycrystalline aggregates within shocked quartz grains. Coesite-bearing quartz grains are present both idiomorphically with original grain margins intact and as highly strained grains that underwent shock-produced plastic deformation. Coesite commonly occurs in plastically deformed quartz grains within domains that appear brown (toasted) in transmitted light and rarely within quartz of spheroidal texture. The coesite likely developed by a mechanism of solid-state transformation from precursor quartz. Raman spectroscopy also showed a series of unidentified peaks associated with shocked quartz grains that likely represent unidentified silica phases, possibly including a moganite-like phase that has not previously been associated with coesite.

We report for the first time U Pb data establishing the age of the Spor Mountain Formation, a volcanic sequence that hosts the largest deposit of beryllium in the world. Determining the age of rocks hosting the beryllium deposit is critical for improved recognition of exploration targets containing additional volcanic-hosted beryllium resources. The deposit occurs in an area of extensive alkalic rhyolitic ash flow tuffs and Oligocene and Eocene calderas underlain by Paleozoic and older limestone, dolomite, shale, and quartzite. Data were obtained by analysis of zircon from the Spor Mountain Formation using the Sensitive High-Resolution Ion Microprobe-Reverse Geometry (SHRIMP-RG) technique. We show that lower fluorite and bertrandite-rich tuff and upper topaz-rich rhyolite have overlapping crystallization ages. Zircon from the crystal- and lithic-rich beryllium tuff produced two populations with a predominant group yielding a weighted average 206Pb/238U age of 25.59 + 0.29/−0.45 Ma (± 2σ errors; 41 spots that form a coherent age group) and a separate younger age group at 20.84 + 1.29/−0.64 Ma (16 spots). Spot analyses for each group include cores and rims and show no evidence for older or inherited cores.. The best estimate of the age of crystallization of the beryllium tuff is taken as 25.59 + 0.29/−0.45 Ma. Younger spot analyses that are not part of the coherent group likely reflect Pb loss from thermal events related to renewed influx of hydrothermal F-rich fluids into the tuff. Uranium concentrations and 206Pb/238U spot ages show no statistically significant correlation for the beryllium tuff. Zircon from the overlying, capping rhyolite yields weighted mean 206Pb/238U crystallization ages between ca. 25.1 Ma and 26.2 Ma. The rhyolite that yielded the slightly older age, at ca. 26.2 Ma, shows a strong positive association between U content and 206Pb/238U spot age (correlation coefficient, r = 0.88). We interpret this to be a consequence of the effects of high-U concentrations in the zircon matrix as evidenced by dark zones in crystals. Zircon temperatures from tuff range from ~600 °C to 1200 °C and in rhyolite from ~525 °C to 1000 °C. Beryllium in zircon from tuff and rhyolite overlap (~1 to 150 ppm) and do not correlate with U Pb spot age, Hf, Ti, and other trace element abundances or ratios. REE contents of zircon (chondrite-normalized) are depleted in the light REE, enriched in the heavy REE, and show prominent positive Ce and negative Eu anomalies. V-shaped REE patterns are characteristic of zircons that are not part of the coherent age group. Whole rock ratios of tuff and rhyolite, such as Th/U (>0.1) are typical of igneous zircons, plot in the field of continental settings (e.g., U/Yb ~0.8–6, Hf ~10,000–26,000), and are consistent with an origin from sources relatively enriched in Pb. The apparent uniqueness of the Spor Mountain Formation reflects the interplay of alkaline (A-type) trachytic to rhyolitic magma enriched in Be, U, Li, and F and a protracted history of fractional crystallization. Other beryllium occurrences near Spor Mountain highlight the prospective potential for additional resources of volcanic-hosted beryllium.

The REE-mineralized Khanneshin carbonatite complex in southern Afghanistan is an economically light rare earth element (LREE)-enriched carbonatite complex of Quaternary age. Geological studies have suggested that the LREE-enriched rocks at Khanneshin are comparable in grade to many economic REE deposits, including parts of the world-class Bayan Obo (China), and Mountain Pass, California (United States) deposits. The extent of mineralization at Khanneshin is unknown; however, mineralized areas delineated as part of a reconnaissance study are estimated to contain ~ 1.29 Mt REE ore. We have determined for the first time the radiogenic isotope compositions (Pb–Sr–Nd) of bulk rocks and mineral separates (barite, strontianite, carbonate, etc.) of this carbonatite complex and propose the likely source of radiogenic isotope reservoirs associated with the REE mineralization. This study provides an opportunity to establish fundamental isotopic features of this highly mineralized system to aid in regional exploration efforts and to identify other comparable mineralized systems that shared similar source reservoirs, origins, and evolution in southern Afghanistan. The carbonatite complex consists of coarse-grained sovite and brecciated and agglomeratic barite–ankerite alvikite. Small satellitic intrusions of biotite–calcite carbonatite and rare leucite phonolite also crop out. The massif is encircled by alkali metasomatized Neogene sedimentary strata. A peripheral apron of volcanic and volcaniclastic strata extends farther away from the complex. Present-day Pb isotopic compositions of bulk rocks (dikes, welded tuffs, sovite, and mineralized rocks) and mineral separates exhibit a narrow range in 206Pb/204Pb (18.814–18.877), 207Pb/204Pb (15.616–15.674), and 208Pb/204Pb (38.892–39.094). The results show that the source region of the carbonatite had a moderate compositional variation (most samples overlapping within the level of analytical precision). Present-day neodymium isotopic compositions from the Khanneshin carbonatite show a range in 143Nd/144Nd (0.512374–0.512462). Present-day strontium isotopic compositions also have a moderate range in 87Sr/86Sr (0.708034–0.709577); the mineral separates and ore are somewhat less radiogenic in 87Sr/86Sr (0.707954–0.708686) than the whole rocks. A fundamental feature of the Khanneshin carbonatite is the overall high degree of isotopic homogeneity evident for the Nd–Sr–Pb isotopic systems and we regard this consistency as a diagnostic feature related to its evolution. The carbonatite constitutes a unique isotopic target for identification of other mineralized systems that might have shared the same source. The bulk rocks and minerals in the deposit are generally analytically isotopically indistinguishable, regardless of the mineralogical complexities. All rocks and minerals shared radiogenic isotopic reservoirs, a common evolution, and have remained in isotopic equilibrium. Isotope variations eliminate the source of MORB rocks, or depleted mantle (DMM), as a significant reservoir to the Khanneshin carbonatite. Compared to model mantle reservoirs, the Pb and Nd isotopes of the Khanneshin carbonatite roughly suggest source combinations of enriched mantle, type EMI and HIMU. Sr isotopic data highlight the contribution of another source (EMII?) to account for the relatively high values of 87Sr/86Sr. The radiogenic isotope compositions of the Khanneshin carbonatite differ from world-class REE-mineralized systems such as Bayan Obo (China) and Mountain Pass (California).

The Campanian Plain in southern Italy has been volcanically active for at least the last 300 ka. The Campanian Ignimbrite (CI) erupted at 39.3 ka, has a volume of ≥ 310 km3 and a great areal extent. However, significant, but scattered deposits of older ignimbrites underlie the CI and document a long history of volcanism. We examined the mineralogy and geochemistry of 11 older ignimbrite strata by optical petrography, electron microprobe, scanning electron microscope, X-ray diffraction, and various whole-rock geochemical techniques. We have analyzed strata at Durazzano (116.1 ka), Moschiano (184.7 ka), Seiano Valley (245.9 and 289.6 ka), and Taurano — Acqua Feconia (157.4, 183.8, 205.6, and 210.4 ka) that have been previously dated on unaltered sanidine. The older ignimbrites are highly altered with loss on ignition (LOI) that ranges from 17 to 8 wt%. Whole-rock compositions reflect variable element mobility during weathering; e.g., CaO is enriched and Na2O depleted relative to hydration. X-ray diffraction identified major chabazite, kaolinite, and illite alteration products in some samples. Rhabdophane-(Nd), usually intergrown with chabazite and Mn-carbonate, indicates that some LREE were also mobilized during weathering. The phenocryst mineralogy is typical for Campanian Plain (CP) magmas and consists of plagioclase (An88 Ab11 Or1 to An32 Ab63 Or5), potassium feldspar (Or40 Ab57 An3 to Or79 Ab18 An3), biotite (TiO2 = ~ 4–7 wt%, BaO = up to 2 wt%, F = up to 2 wt%), diopside (Ca47Mg47Fe6 to Ca48Mg29Fe23), and titaniferous magnetite. Relatively immobile trace elements Zr, Hf, Th, Ta, V, and Nb were used to investigate element abundance and ratio compared to the Campanian Ignimbrite and other CP magmas. Zr/Hf of the older ignimbrites is similar to that of the CI, but Ta is depleted relative to Th and V is enriched compared to CI. Th/Ta and Nb/V distributions for most of the older ignimbrites are similar to those in the Neapolitan Yellow Tuff with the exception of the sample MS-1 from Moschiano that is more evolved and similar to Campanian Ignimbrite. All older ignimbrite Zr/Hf (w/w) and many Nb/Ta (w/w) ratios are superchondritic that suggests that the older ignimbrites represent fractional crystallization products of parental magmas generated from enriched mantle without significant addition of continental crust.

X-ray diffraction and Raman spectroscopy confirm a rare terrestrial occurrence of monoclinic tridymite in clast-rich impact melt rock from the Eyreville B drill core in the Chesapeake Bay impact structure. The monoclinic tridymite occurs with quartz paramorphs after tridymite and K-feldspar in a microcrystalline groundmass of devitrified glass and Fe-rich smectite. Electron-microprobe analyses revealed that the tridymite and quartz paramorphs after tridymite contain different amounts of chemical impurities. Inspection by SEM showed that the tridymite crystal surfaces are smooth, whereas the quartz paramorphs contain irregular tabular voids. These voids may represent microporosity formed by volume decrease in the presence of fluid during transformation from tridymite to quartz, or skeletal growth in the original tridymite. Cristobalite locally rims spherulites within the same drill core interval. The occurrences of tridymite and cristobalite appear to be restricted to the thickest clast-rich impact melt body in the core at 1402.02–1407.49 m depth. Their formation and preservation in an alkali-rich, high-silica melt rock suggest initially high temperatures followed by rapid cooling.

X-ray diffraction analyses of five samples of pigments from a recently excavated mural at the archaeological site of Huaca Tacaynamo, a part of the Chan Chan archaeological complex, northern Peru, show that minerals related to metal occurrences known to have been exploited by ancient Andeans were also used as pigments. These minerals include: atacamite [Cu2Cl(OH3)] for green; azurite [Cu3(CO3)2(OH)2] for blue; calcite [CaCO3] for white; cinnabar [HgS] for red; and goethite [HFeO2] for yellow. Woven plant material from Tacaynamo gave a calibrated, 2 sigma 14C date of AD 1412-1614; however, initial occupation of the site and painting of the murals may have been earlier.

Analyses of a 20-30 cm thick, completely combusted ash at the 25 x 70 m Tschudi burn at Chan Chan, northern Peru, contain 52-55 wt% SiO 2, 180-210 ppm zirconium and are consistent with coal ash. Soil geochemistry across the burn showed elevated calcium and phosphorus content, possible evidence for reported human cremation. A calcined, 5 g, 4.5 cm skull fragment recovered from the burn was confirmed as human by protein radioimmunoassay (pRIA). X-ray diffraction showed that the bone had been heated to 520°C. The burn took place c. AD 1312-1438 based on interpretation of a 14 C date on carbonized plant tinder.

Background and purposeMost patients with stroke-like symptoms screened by advanced imaging for proximal occlusion will not have a thrombus accessible by neurointerventional techniques. Development of a sensitive clinical scoring system for rapidly identifying patients with an emergent large vessel occlusion could help target limited resources and reduce exposure to unnecessary imaging.MethodsThis historical cohort study included patients who underwent non-contrast CT and CT angiography in the emergency department for stroke-like symptoms. NIH Stroke Scale (NIHSS) criteria were extended to include resolved symptoms and dichotomized as present or absent. Combinations of NIHSS criteria were considered as tests for proximal occlusion.ResultsProximal cerebral vascular occlusion was present in 19.2% (100/522) of the population and, of these, 13% (13/100) had an NIHSS score of 0. The presence on examination or history of diminished consciousness with inability to answer questions, leg weakness, dysarthria, or gaze deviation had 96% sensitivity and 39% specificity for proximal occlusion. If implemented in this population, the use of CT angiography would have been decreased by 32.4% (169/522 patients) while missing 0.76% with proximal occlusions (4/522). Half of those missed (2/4) would have been identified as large vessel infarcts on non-contrast CT, while the remainder (2/4) were transient ischemic attacks associated with carotid stenosis.ConclusionsIn this cohort, specific NIHSS criteria were highly sensitive for emergent large vessel occlusion and, if validated, may allow for clinical screening prior to advanced imaging with CT angiography.

This paper proposes a joint model for longitudinal binary and count outcomes. We apply the model to a unique longitudinal study of teen driving where risky driving behavior and the occurrence of crashes or near crashes are measured prospectively over the first 18 months of licensure. Of scientific interest is relating the two processes and predicting crash and near crash outcomes. We propose a two-state mixed hidden Markov model whereby the hidden state characterizes the mean for the joint longitudinal crash/near crash outcomes and elevated g-force events which are a proxy for risky driving. Heterogeneity is introduced in both the conditional model for the count outcomes and the hidden process using a shared random effect. An estimation procedure is presented using the forward-backward algorithm along with adaptive Gaussian quadrature to perform numerical integration. The estimation procedure readily yields hidden state probabilities as well as providing for a broad class of predictors., Published at http://dx.doi.org/10.1214/14-AOAS765 in the Annals of Applied Statistics (http://www.imstat.org/aoas/) by the Institute of Mathematical Statistics (http://www.imstat.org)

A shock-induced polymorph (TiO2 II) of anatase and rutile has been identified in breccias from the late Eocene Chesapeake Bay impact structure. The breccia samples are from a recent, partially cored test hole in the central uplift at Cape Charles, Virginia. The drill cores from 744 to 823 m depth consist of suevitic crystalline-clast breccia and brecciated cataclastic gneiss in which the TiO2 phases anatase and rutile are common accessory minerals. Electron-microprobe imaging and laser Raman spectroscopy of TiO2 crystals, and powder X-ray diffraction (XRD) of mineral concentrates, confirm that a high-pressure, α-PbO2 structured polymorph of TiO2 (TiO2 II) coexists with anatase and rutile in matrix-hosted crystals and in inclusions within chlorite. Raman spectra of this polymorph include strong bands at wavenumbers (cm−1) 175, 281, 315, 342, 356, 425, 531, 571, and 604; they appear with anatase bands at 397, 515, and 634 cm−1, and rutile bands at 441 and 608 cm−1. XRD patterns reveal 12 lines from the polymorph that do not significantly interfere with those of anatase or rutile, and are consistent with the TiO2 II that was first reported to occur naturally as a shock-induced phase in rutile from the Ries crater in Germany. The recognition here of a second natural shock-induced occurrence of TiO2 II suggests that its presence in rocks that have not been subjected to ultrahigh-pressure regional metamorphism can be a diagnostic indicator for confirmation of suspected impact structures.

A quick and inexpensive method of relative high iodine determination from coal samples was evaluated. Energy dispersive X-ray fluorescence (EDXRF) provided a detection limit of about 14 ppm (3 times of standard deviations of the blank sample), without any complex sample preparation. An analytical relative standard deviation of 16% was readily attainable for coal samples. Under optimum conditions, coal samples with iodine concentrations higher than 5 ppm can be determined using this EDXRF method. For the time being, due to the general iodine concentrations of coal samples lower than 5 ppm, except for some high iodine content coal, this method can not effectively been used for iodine determination. More work needed to meet the requirement of determination of iodine from coal samples for this method.

The INO2 gene encodes a transcriptional activator of the phospholipid biosynthetic genes of Saccharomyces cerevisiae. Complete derepression of phospholipid biosynthetic gene expression in response to inositol/choline deprivation requires both INO2 and INO4. Ino2p dimerizes with Ino4p to bind the upstream activating sequence (UAS)INO element found in the promoters of the target genes. We have demonstrated previously that transcription from the INO2 promoter is autoregulated 12-fold in a manner identical to that of the target genes. Here, we show that this regulation occurs at the levels of transcription and translation. Transcription accounts for fourfold regulation, whereas translation accounts for an additional threefold regulation. Regulation of transcription requires a UASINO element. Additional promoter elements include an upstream essential sequence (UES) located upstream of the UASINO element and a negative regulatory element in the vicinity of the UASINO element. Regulation of translation is dependent on an upstream open reading frame (uORF) in the INO2 leader. These data support the model that regulatory gene promoters may display unusual organizations and may be subject to multiple levels of regulation. We have shown previously that the UME6 gene positively regulates INO2 expression. Here, we limit the UME6-responsive region of the INO2 promoter to nucleotides −217 to −56.

Metal cycling via physical and chemical weathering of discrete sources (copper mines) and regional (non-point) sources (sulfide-rich shale) is evaluated by examining the mineralogy and chemistry of weathering products in Great Smoky Mountains National Park, Tennessee, and North Carolina, USA. The elements in copper mine waste, secondary minerals, stream sediments, and waters that are most likely to have negative impacts on aquatic ecosystems are aluminum, copper, zinc, and arsenic because these elements locally exceed toxicity guidelines for surface waters or for stream sediments. Acid-mine drainage has not developed in streams draining inactive copper mines. Acid-rock drainage and chemical weathering processes that accompany debris flows or human disturbances of sulfidic rocks are comparable to processes that develop acid-mine drainage elsewhere. Despite the high rainfall in the mountain range, sheltered areas and intermittent dry spells provide local venues for development of secondary weathering products that can impact aquatic ecosystems.

The Ume6p-Sin3p-Rpd3p complex negatively regulates expression of genes containing a Ume6p binding site. However, these regulatory proteins also function independently to regulate gene expression both negatively and positively. The model system for this combinatorial regulation is the yeast phospholipid biosynthetic pathway. Sin3p negatively regulates the INO1, CHO1, CHO2 and OPI3 genes while Ume6p negatively regulates the INO1 gene and positively regulates the other genes. We have suggested that the positive regulation results from indirect effects on expression of the INO2 transcriptional activator gene. Here, we demonstrate that the effect of Ume6p on INO2 gene expression is also indirect. We also show that Rpd3p is a negative regulator of phospholipid biosynthetic gene expression. The ability of Ume6p, Sin3p and Rpd3p to differentially regulate expression of the phospholipid biosynthetic genes affects phospholipid composition. A sin3 mutant strain lacks detectable levels of phosphatidylethanolamine and elevated levels of phosphatidylcholine (PC) and a rpd3 mutant strain has reduced levels of PC. These alterations in membrane composition suggest that there may exist additional differences in regulation of phospholipid biosynthetic gene expression and that membrane compositions may be coordinated with other biological processes regulated by Ume6p, Sin3p and Rpd3p.

The activity of the pyruvate dehydrogenase multienzyme complex (PDC), which catalyses the oxidation of pyruvate to acetyl-CoA within the mitochondrion, is diminished in animal models of diabetes. Studies with purified PDC components have suggested that the kinases responsible for inactivating the decarboxylase catalytic subunits of the complex are most efficient in their regulatory role when they are bound to dihydrolipoyl acetyltransferase (E2) subunits, which form the structural core of the complex. We report that the addition of an exogenous E2 subdomain (inner lipoyl domain) to an intact PDC inhibits ATP-dependent inactivation of the complex. By combining molecular modelling, site-directed mutagenesis and biophysical characterizations, we have also identified two amino acid residues in this subdomain (Ile229 and Phe231) that largely determine the magnitude of this effect.

National data consistently report that males participate in leisure time physical activity (LTPA) at higher rates than females. This study expanded previous research to examine gender differences in LTPA of college students using the theory of planned behavior (TPB) by including 2 additional constructs, descriptive norm and self-efficacy, from the integrated behavioral model.Participants were college students (N = 621) from a large public university in the southeastern United States.A self-report, classroom-based assessment with validated and reliable measures of LTPA, TPB constructs, descriptive norm, self-efficacy, and demographics was conducted in fall 2009.Regression analyses revealed attitude (β = .119), intention (β = .438), self-efficacy (β = .166), body mass index (BMI) (β = -.084), and sports participation (β = .081) as significantly associated with LTPA for females (R (2) = .425, p.001), whereas intention (β = .371) was significant for males (R (2) = .202, p.001).Practitioners should consider tailoring promotional materials to address these gender differences in efforts to increase LTPA participation among college students.

Summary In a unique longitudinal study of teen driving, risky driving behaviour and the occurrence of crashes or near crashes are measured prospectively over the first 18 months of licensure. Of scientific interest is relating the two processes and developing a predictor of crashes from previous risky driving behaviour. In this work, we propose two latent class models for relating risky driving behaviour to the occurrence of a crash or near-crash event. The first approach models the binary longitudinal crash or near-crash outcome by using a binary latent variable which depends on risky driving covariates and previous outcomes. A random-effects model introduces heterogeneity among subjects in modelling the mean value of the latent state. The second approach extends the first model to the ordinal case where the latent state is composed of K ordinal classes. Additionally, we discuss an alternative hidden Markov model formulation. Estimation is performed by using the expectation–maximization algorithm and Monte Carlo expectation–maximization. We illustrate the importance of using these latent class modelling approaches through the analysis of the teen driving behaviour.

The purpose of this research was to determine the extent to which elevated gravitational-force event rates predict crashes and near crashes. Accelerometers, global positioning systems, cameras, and other technology were installed in vehicles driven by 42 newly licensed Virginia teenage drivers for a period of 18 months between 2006 and 2009. Elevated gravitational force and crash and near-crash events were identified, and rates per miles driven were calculated. (One mile = 1.6 km.) The correlation between crashes and near crashes and elevated gravitational-force event rates was 0.60. Analyses were done by using generalized estimating equations with logistic regression. Higher elevated gravitational-force event rates in the past month substantially increased the risk of a crash in the subsequent month (odds ratio = 1.07, 95% confidence interval: 1.02, 1.12). Although the difference in this relation did not vary significantly by time, it was highest in the first 6 months compared with the second and third 6-month periods. With a receiver operating characteristic curve, the risk models showed relatively high predictive accuracy with an area under the curve of 0.76. The authors conclude that elevated gravitational-force event rates can be used to assess risk and to show high predictive accuracy of a near-future crash.

John C Jackson, Anthony L Farone, Mary B Farone Biology Department, Middle Tennessee State University, Murfreesboro, Tennessee, USA Purpose: Diarrheal disease is one of the leading causes of morbidity in developing countries. To further understand the epidemiology of diarrheal disease among a rural population surrounding Robillard, Haiti, fecal swabs from patients with diarrhea were screened for the presence of enteropathogenic bacteria. Patients and methods: Fecal swabs were collected from 34 patients with signs and symptoms of diarrhea and stored in BBLTM Cary-Blair transport medium (Becton, Dickinson and Company, Sparks, MD) until transit to the USA. Swab material was inoculated on to different enrichment and selective agars for incubation. Fermenting and nonfermenting bacteria that grew on the enteric selection media were identified by the BBLTM CrystalTM Enteric/Nonferementing Identification system (Becton, Dickinson and Company). Organisms identified as Escherichia coli were further screened for the presence of virulence factors by polymerase chain reaction (PCR). Results: Of 34 patients, no Campylobacter, Shigella, Salmonella, or Vibrio spp. were isolated from swabs transported to the USA for culture. Of 73 E. coli isolates cultured from the swabs, one enteropathogenic strain of E. coli was identified by multiplex PCR. Escherichia fergusonii and Cronobacter sakazakii, both potential gastrointestinal pathogens, were also isolated from patient stools. Conclusion: This study was undertaken to determine if bacterial enteropathogens could be detected in the stools of patients suffering from diarrhea or dysentery and, in the absence of sufficient facilities, rectal swabs could be transported to the USA for culture. Although several genera of overt enteropathogens were not detected, one enteropathogenic E. coli and other pathogenic enterobacteriaceae were successfully cultured and identified. Keywords: Escherichia, Cronobacter, diarrheagenic, stool

Ancient man first used coal as an energy source 73,500 years ago in Les Canalettes, southern France, and archaeologists initially thought that the coal was deformed charcoal. It was used by many ancient civilizations all over the world. Coal is widely available in northern Peru and was used by ancient Peruvians, such as the Moche and Chimu, for metallurgy, mirrors, and jewelry. Algorrobo charcoal is the acknowledged fuel for metallurgy in northern Peru, but the worldwide, centuries-old use of coal, its regional availability, and its use for jewelry and mirrors in ancient Peru suggest that it may have been used for other purposes. This chapter discusses the use of coal in cremation by ancient civilizations. The Tschudi burn was an exceptionally large, single-use fire, apparently for a specific purpose or ritual, and the fuel for this event was possibly chosen for a specific characteristic such as its property as a burning rock or its sulfurous, brimstone smell. Given that mass burials are common in ancient northern Peru, 200–300 bodies were found in burial platforms at Chan Chan, and the large size of the Tschudi burn, it is possible that a number of individuals may have been cremated at the Tschudi burn. A 14C date on carbonized plant material, interpreted as tinder, indicates that the Tschudi burn was pre-European contact and took place AD 1312–1438, toward the end of Chimu domination of the region. The presence of a calcined, human skull fragment that was heated to 525°C confirms, as Colonel La Rosa said in 1877, that the site was used for burning of the dead.

In Saccharomyces cerevisiae, regulation of the phospholipid biosynthetic genes, INO1, CHO1, CHO2 and OPI3, is known to occur at the level of transcript abundance. Derepression in response to inositol deprivation requires the INO2 and INO4 regulatory genes. Repression in response to inositol supplementation requires the OPI1 regulatory gene. Here, we examined the role of the UME6 global negative regulatory gene in expression of the phospholipid biosynthetic genes. These studies were stimulated by the finding that the INO1 promoter included a UME6 cognate cis-acting regulatory sequence (URS1). We found that the UME6 negative regulatory gene was involved in regulation of phospholipid biosynthetic gene expression through two distinct regulatory pathways. One pathway was the direct repression of INO1 expression through the URS1 element. Surprisingly, the UME6 gene was also required for derepression of CHO1, CHO2 and OPI3 gene expression. Consistent with this observation, the UME6 gene was required for wild-type levels of expression of the INO2 positive regulatory gene. Therefore, the UME6 gene has both a negative and a positive role in regulating phospholipid biosynthesis.

Here we report the isolation of an enolase (Eno)-encoding cDNA clone from Schizosaccharomyces pombe. The deduced amino acid (aa) sequence of the 1.4-kb cDNA shares identities with a number of Eno from Escherichia coli to humans. The highest degree of similarity is to the known Eno from Saccharomyces cerevisiae and an Eno from Candida albicans. Northern blot analysis identified a single transcript of approx. 1.4 kb, which was most abundant when cells were grown in media with glucose as the carbon source, as opposed to glycerol/lactate or ethanol.

Here we report the physical map locations of five genes required for phospholipid biosynthesis in Saccharomyces cerevisiae. These include four structural genes (INO1, CHO2, OP13 and PIS1) and one global negative regulatory gene (UME6). Collectively, this information completes the mapping of all phospholipid biosynthetic structural and regulatory genes identified to date.

Computer analysis of X-ray diffraction (XRD) data provides a simple method for determining the semiquantitative mineralogical composition of naturally occurring mixtures of saline minerals. The method herein described was adapted from a computer program for the study of mixtures of naturally occurring clay minerals. The program evaluates the relative intensities of selected diagnostic peaks for the minerals in a given mixture, and then calculates the relative concentrations of these minerals. The method requires precise calibration of XRD data for the minerals to be studied and selection of diffraction peaks that minimize inter-compound interferences. The calculated relative abundances are sufficiently accurate for direct comparison with bulk chemical analyses of naturally occurring saline mineral assemblages. RESUMEN. Metodo para el analisis mineralogico semicuantitativo de nitratos chilenos por difraccion de rayos X. El analisis por difraccion de rayos X (XRD) es un metodo simple que se puede utilizar para determinar la composicion mineralogica semicuantitativa de mezclas de minerales salinos que ocurren en forma natural. El metodo descrito en el presente estudio fue adaptado de un programa computacional para el estudio de mezclas de minerales de arcilla. El programa evalua las intensidades relativas de picos de diagnostico seleccionados para minerales de una mezcla determinada y, enseguida, calcula las concentraciones relativas de estos minerales. El metodo requiere una calibracion precisa de los datos XRD para los minerales que seran estudiados, seleccionandose los picos de difraccion que minimizan las interferencias interminerales. Las abundancias relativas calculadas son suficientemente precisas para la comparacion directa con analisis quimicos de diversas asociaciones de minerales salinos.