93 results on '"Jiarui Sun"'
Search Results
2. Research on Disaster Prevention and Control Technology for Directional Hydraulic Fracturing and Roof Plate Unloading
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Dong Liu, Jiayue Deng, Tao Yang, Jie Zhang, Haifei Lin, Hui Liu, Jiarui Sun, and Yiming Zhang
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directional hydraulic fracturing ,decompression mechanism ,RFPA 3D numerical simulation ,fracture evolution law ,field testing ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
In coal seam groups where the spacing between the upper and lower seams is small, the lower seam working face is significantly influenced by residual coal pillars from the upper seam and the void spaces created during mining. This presents considerable challenges for underground mining safety. Through field investigations, the layout of the coal seam quarry above the working face of the 3−1 coal seam in Yanghuopan Mine was examined, along with the distribution of the residual coal pillars. This allowed for the identification of the interlayer rock strata characteristics. Subsequently, we analyzed the mechanism of directional hydraulic fracturing and decompression to determine the key parameters of the 3−1 coal seam. Using the Rock Fracture Process Analysis 3D (RFPA 3D) numerical simulation, we evaluated the effects of various factors on the initiation and propagation of hydraulic fracturing-induced cracks, formulated the evolution law of these fractures, and incorporated the damage variables into the analysis. Additionally, we assessed the influence of different parameters on crack initiation and extension during hydraulic fracturing, using RFPA 3D simulations to derive the evolution law governing directional hydraulic fractures. This allowed us to define the hydraulic fracturing parameters for the 3−1 interbedded rock layers by integrating the process parameter calculations with the damage variables. Based on these findings, an on-site implementation plan was developed and executed, followed by a comprehensive evaluation of the construction results. The study concludes that directional hydraulic fracturing and decompression effectively contribute to the prevention and control of roof-related disasters in the mining of lower coal seams where seam spacing is minimal. This research offers valuable theoretical insights and practical reference for disaster prevention and control in similar geological conditions.
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- 2024
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3. Study on the Dynamic Evolution of Overburden Bed Separation Based on a Bed Separation Water Disaster
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Tao Yang, Jiarui Sun, Jie Zhang, Haifei Lin, Ruoyu Bao, Jianjun Wu, Yiming Zhang, and Jiayue Deng
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separation layer water hazard ,separation layer space ,height of the water-conducting fracture zone ,dynamic evolution of overlying rock strata ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Water inrush from separation layers is a special type of water inrush disaster that occurs during coal mining. It is characterized by the absence of precursors before the inrush, a sudden and massive influx of water, strong destructive power, and significant difficulty in prevention and control. This disaster causes substantial economic losses and casualties in mines. To study the dynamic evolution characteristics of the overlying rock strata in Guojiahe coal mine, field investigations, theoretical analysis, physical simulations, and numerical simulations were conducted. The development state of the overlying rock strata and the height of the water-conducting fractures in the 1304 working face during continuous mining were analyzed, and the spatial position of the strata where water hazards could form was determined. Through theoretical calculations, the height of the water-conducting fracture zone was found to be approximately 205 m, forming a water-storable separation space about 248 m above the coal seam roof. A physical similarity model was constructed to study the development state of overlying rock strata separation in the 1304 working face. Experimental results indicate that, as the working face advances, the rock strata gradually develop lateral separation spaces from bottom to top, and vertical fractures increase progressively in a similar manner. The spaces and fractures formed in the early stages of the working face advance gradually close and form a compaction zone. However, new fractures develop near the working face side. As mining continues, the asynchronous movement of the overlying rock promotes the development of vertical fractures, providing water-conducting channels for water inrush from the separation. Based on numerical simulation analysis of the development state of overlying rock strata separation and the height of the water-conducting fracture zone, it can be concluded that the water-storable separation space develops between the 8th layer of the formation of sandy mudstone and the 9th layer of the Yijun Formation conglomerate, which is 248 m from the coal seam roof. When excavated to 280 m, the separation space reaches its maximum, with a width of about 19 m and a height of about 1.2 m, and the water storage capacity increases to its maximum. The height of the water-conducting fracture zone eventually increases to 202 m.
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- 2024
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4. Automatic identification and morphological comparison of bivalve and brachiopod fossils based on deep learning
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Jiarui Sun, Xiaokang Liu, Yunfei Huang, Fengyu Wang, Yongfang Sun, Jing Chen, Daoliang Chu, and Haijun Song
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Fossil identification ,Machine learning ,Invertebrate ,Morphology ,Convolutional neural network ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Fossil identification is an essential and fundamental task for conducting palaeontological research. Because the manual identification of fossils requires extensive experience and is time-consuming, automatic identification methods are proposed. However, these studies are limited to a few or dozens of species, which is hardly adequate for the needs of research. This study enabled the automatic identification of hundreds of species based on a newly established fossil dataset. An available “bivalve and brachiopod fossil image dataset” (BBFID, containing >16,000 “image-label” data pairs, taxonomic determination completed) was created. The bivalves and brachiopods contained in BBFID are closely related in morphology, ecology and evolution that have long attracted the interest of researchers. We achieved >80% identification accuracy at 22 genera and ∼64% accuracy at 343 species using EfficientNetV2s architecture. The intermediate output of the model was extracted and downscaled to obtain the morphological feature space of fossils using t-distributed stochastic neighbor embedding (t-SNE). We found a distinctive boundary between the morphological feature points of bivalves and brachiopods in fossil morphological feature distribution maps. This study provides a possible method for studying the morphological evolution of fossil clades using computer vision in the future.
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- 2023
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5. Bioinformatics-based analysis reveals elevated CYTL1 as a potential therapeutic target for BRAF-mutated melanoma
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Lei Tao, Yingyue Cui, Jiarui Sun, Yu Cao, Zhen Dai, Xiaoming Ge, Ling Zhang, Run Ma, and Yunyao Liu
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melanoma ,BRAF mutations ,CYTL1 ,molecular biomarker ,cell migration and invasion ,Biology (General) ,QH301-705.5 - Abstract
Introduction: Despite many recent emerging therapeutic modalities that have prolonged the survival of melanoma patients, the prognosis of melanoma remains discouraging, and further understanding of the mechanisms underlying melanoma progression is needed. Melanoma patients often have multiple genetic mutations, with BRAF mutations being the most common. In this study, public databases were exploited to explore a potential therapeutic target for BRAF-mutated melanoma.Methods: In this study, we analyzed differentially expressed genes (DEGs) in normal tissues and melanomas, Braf wild-type and Braf mutant melanomas using information from TCGA databases and the GEO database. Subsequently, we analyzed the differential expression of CYTL1 in various tumor tissues and its effect on melanoma prognosis, and resolved the mutation status of CYTL1 and its related signalling pathways. By knocking down CYTL1 in melanoma cells, the effects of CYTL1 on melanoma cell proliferation, migration and invasion were further examined by CCK8 assay, Transwell assay and cell migration assay.Results: 24 overlapping genes were identified by analyzing DEGs common to melanoma and normal tissue, BRAF-mutated and BRAF wild-type melanoma. Among them, CYTL1 was highly expressed in melanoma, especially in BRAF-mutated melanoma, and the high expression of CYTL1 was associated with epithelial-mesenchymal transition (EMT), cell cycle, and cellular response to UV. In melanoma patients, especially BRAF-mutated melanoma patients, clinical studies showed a positive correlation between increased CYTL1 expression and shorter overall survival (OS) and disease-free survival (DFS). In vitro experiments further confirmed that the knockdown of CYTL1 significantly inhibited the migration and invasive ability of melanoma cells.Conclusion: CYTL1 is a valuable prognostic biomarker and a potentially effective therapeutic target in melanoma, especially BRAF-mutated melanoma.
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- 2023
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6. Agaricus bisporus-Derived Glucosamine Hydrochloride Regulates VEGF through BMP Signaling to Promote Zebrafish Vascular Development and Impairment Repair
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Jiarui Sun, Qici Wu, Yuxin Wei, Wei Zhao, Haokun Lv, Wei Peng, Jiayi Zheng, Yixuan Chen, Zhengsen Wang, Yutian Pan, and Yu Xue
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glucosamine hydrochloride ,vascular development ,impairment repair ,BMP ,VEGF ,zebrafish ,Science - Abstract
Glucosamine hydrochloride (GAH) is a natural component of glycoproteins present in almost all human tissues and participates in the construction of human tissues and cell membranes. GAH has a wide range of biological activities, particularly in anti-inflammatory and osteogenic damage repair. At present, little is known about how GAH functions in angiogenesis. To determine the role of GAH on vascular development and impairment repair, we used the inhibitors VRI, DMH1, and dorsomorphin (DM) to construct vascular-impaired models in Tg(kdrl: mCherry) transgenic zebrafish. We then treated with GAH and measured its repair effects on vascular impairment through fluorescence intensity, mRNA, and protein expression levels of vascular-specific markers. Our results indicate that GAH promotes vascular development and repairs impairment by regulating the vascular endothelial growth factor (VEGF) signaling pathway through modulation of bone morphogenetic protein (BMP) signaling. This study provides an experimental basis for the development of GAH as a drug to repair vascular diseases.
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- 2023
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7. Formation interval determination method of MPD based on risk aversion and casing level optimization
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Yuqiang Xu, Chao Han, Jiarui Sun, Baolun He, Zhichuan Guan, and Yishu Zhao
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managed pressure drilling ,risk aversion ,formation matching interval ,artificial bee colony algorithm ,optimization of pressure control parameters ,Physics ,QC1-999 - Abstract
MPD is one of the effective means to solve the drilling problems in deep-water and deep-stratum complex formations such as narrow pressure window. To reduce the cost, it is mostly implemented only in complex and narrow pressure window strata. However, at present, there is no scientific method to determine the MPD matching stratum interval under the “conventional + MPD” composite drilling mode. Aiming at this problem, by introducing the methods of risk quantitative evaluation and taking the principle of “avoiding risk and reducing MPD cost”, combined with the accurate ECD calculation method considering multiphase flow, this paper puts forward the accurate determination method of matching the stratum interval of MPD, which can reduce the section of MPD construction as much as possible and optimize the casing level on the premise of ensuring safety. Based on the artificial bee colony algorithm, the intelligent determination method of casing level and setting depth under the condition of pressure control is established, which can quickly and accurately obtain the maximum casing setting depth and its corresponding optimal pressure control parameters in the open-hole section. The case analysis shows that, compared with the conventional drilling mode, the “upper conventional + lower MPD” drilling method can save one layer of casing while ensuring safety. The proposed method can provide theoretical and scientific basis for the accurate calculation of MPD matching stratum interval under the “conventional + MPD” compound drilling mode and the scientific and efficient design of casing levels and setting depth under the condition of pressure control.
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- 2022
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8. Prediction of the COVID-19 outbreak in China based on a new stochastic dynamic model
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Yuan Zhang, Chong You, Zhenhao Cai, Jiarui Sun, Wenjie Hu, and Xiao-Hua Zhou
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Medicine ,Science - Abstract
Abstract The current outbreak of coronavirus disease 2019 (COVID-19) has become a global crisis due to its quick and wide spread over the world. A good understanding of the dynamic of the disease would greatly enhance the control and prevention of COVID19. However, to the best of our knowledge, the unique features of the outbreak have limited the applications of all existing dynamic models. In this paper, a novel stochastic model was proposed aiming to account for the unique transmission dynamics of COVID-19 and capture the effects of intervention measures implemented in Mainland China. We found that: (1) instead of aberration, there was a remarkable amount of asymptomatic virus carriers, (2) a virus carrier with symptoms was approximately twice more likely to pass the disease to others than that of an asymptomatic virus carrier, (3) the transmission rate reduced significantly since the implementation of control measures in Mainland China, and (4) it was expected that the epidemic outbreak would be contained by early March in the selected provinces and cities in China.
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- 2020
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9. Undinarchaeota illuminate DPANN phylogeny and the impact of gene transfer on archaeal evolution
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Nina Dombrowski, Tom A. Williams, Jiarui Sun, Benjamin J. Woodcroft, Jun-Hoe Lee, Bui Quang Minh, Christian Rinke, and Anja Spang
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Science - Abstract
The evolutionary relationships within Archaea remain unresolved. Here, the authors used genomic approaches to study the Undinarchaeota, a previously uncharacterized clade of DPANN, shed light on their position in an updated archaeal phylogeny and illuminate the history of archaeal genome evolution.
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- 2020
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10. Characterization of the Human Oropharyngeal Microbiomes in SARS‐CoV‐2 Infection and Recovery Patients
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Ming Gao, Haiyu Wang, Hong Luo, Ying Sun, Ling Wang, Suying Ding, Hongyan Ren, Jiaqi Gang, Benchen Rao, Shanshuo Liu, Xuemei Wang, Xinxin Gao, Mengyi Li, Yawen Zou, Chao Liu, Chengyu Yuan, Jiarui Sun, Guangying Cui, and Zhigang Ren
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COVID‐19 ,noninvasive biomarkers ,oropharyngeal microbiome ,SARS‐CoV‐2 ,Science - Abstract
Abstract Respiratory tract microbiome is closely related to respiratory tract infections, while characterization of oropharyngeal microbiome in recovered coronavirus disease 2019 (COVID‐19) patients is not studied. Herein, oropharyngeal swabs are collected from confirmed cases (CCs) with COVID‐19 (73 subjects), suspected cases (SCs) (36), confirmed cases who recovered (21), suspected cases who recovered (36), and healthy controls (Hs) (140) and then completed MiSeq sequencing. Oropharyngeal microbial α‐diversity is markedly reduced in CCs versus Hs. Opportunistic pathogens are increased, while butyrate‐producing genera are decreased in CCs versus Hs. The classifier based on eight optimal microbial markers is constructed through a random forest model and reached great diagnostic efficacy in both discovery and validation cohorts. Notably, the classifier successfully diagnosed SCs with positive IgG antibody as CCs and is demonstrated from the perspective of the microbiome. Importantly, several genera with significant differences gradually increase and decrease along with recovery from COVID‐19. Forty‐four oropharyngeal operational taxonomy units (OTUs) are closely correlated with 11 clinical indicators of SARS‐CoV‐2 infection and Hs based on Spearman correlation analysis. Together, this research is the first to characterize oropharyngeal microbiota in recovered COVID‐19 cases and suspected cases, to successfully construct and validate the diagnostic model for COVID‐19 and to depict the correlations between microbial OTUs and clinical indicators.
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- 2021
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11. Landscape Pattern Vulnerability of the Eastern Hengduan Mountains, China and Response to Elevation and Artificial Disturbance
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Jiarui Sun, Lu Zhou, and Hua Zong
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eastern Hengduan Mountains ,landscape pattern vulnerability index ,landscape artificial disturbance intensity ,human activities ,elevation ,Agriculture - Abstract
The eastern Hengduan Mountains are located in the transition zone between the Qinghai-Tibet Plateau and the Sichuan Basin and are important for global biodiversity and water conservation in China. However, their landscape pattern vulnerability index (LVI) and its influencing factors have not been systematically studied. Therefore, the spatial distribution patterns, LVI, and the landscape artificial disturbance intensity (LHAI) of Ganzi Prefecture were analyzed using ArcGIS software based on landscape data and Digital Elevation Model (DEM) digital elevation data. Then, the LVI response to LHAI and elevation was discussed. The results showed that Ganzi Prefecture was dominated by low- and middle-LVI areas, together accounting for 56.45% of the total area. LVI values were highest in the northern regions, followed by the southern and eastern regions. Batang and Derong counties had the highest LVI values. Most areas in Ganzi Prefecture had very low- or low-LHAI values, accounting for 81.48% of the total area, whereas high-LHAI areas accounted for 2.32% of the total area. Both the LVI and LHAI of Ganzi Prefecture had clustered distributions. Spearman analysis indicated that when elevation exceeded 4500 m, it was the most important factor affecting LVI and LHAI. In the range of 4500–5400 m, the relationship between elevation and LVI shifted from a weak positive correlation to a negative correlation, whereas LHAI was positively correlated with elevation. In addition, LVI also responded significantly to LHAI. However, the relationship kept changing as elevation increased. Hence, the ecological vulnerability of high elevation areas above 4500 m deserves greater attention. In addition, pasture areas in the upstream reaches of the Yalong River in the northern region, the coastal area in the downstream reaches of the Jinsha River in the southern region, and the eastern mining area, should be prioritized for protection and restoration. This research provides a basis for appropriate environmental planning mechanisms and policy protections at the landscape level.
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- 2022
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12. The Influence of Transient Changes in Indoor and Outdoor Thermal Comfort on the Use of Outdoor Space by Older Adults in the Nursing Home
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Hua Zong, Jiao Wang, Ting Zhou, Jiarui Sun, and Xuehong Chen
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nursing home ,indoor and outdoor spaces ,microclimatic difference ,elderly ,thermal comfort ,Building construction ,TH1-9745 - Abstract
Recently, the requirements regarding the environment of nursing homes are high, because the elderly are a vulnerable group with limited adaptive capacity to respond to transient environmental change. This paper presents a field investigation on the influence of transient thermal comfort changes between the indoor and outdoor spaces (i.e., air temperature (Ta), solar radiation (SR), relative humidity (RH), wind speed (WS), and the thermal comfort indices of Universal Thermal Index (UTCI)) on the willingness of the elderly to use outdoor spaces of the Wanxia nursing home of Chengdu City. Results indicated that, in summer, the mean UTCI values of indoor and corridor spaces corresponded to the level of moderate heat stress, while those of road and garden corresponded to the strong heat stress level. Road and garden spaces even showed moderate heat stress in spring. Approximately 28.93% (139) of the elderly living here used outdoor spaces every day. The morning period (from 9:00 a.m. to 10:00 a.m.) was the elderly’s favorited period for using outdoor spaces in seasons. The microclimatic transient differences between indoor and outdoor spaces ranged from 0.47 °C to 2.93 °C (|ΔTa|), from 86.09 W/m2 to 206.76 W/m2 (|ΔSR|), from 5.29% to 14.76% (ΔRH), from 0.01 m/s to 0.07 m/s (|ΔWS|), and from 0.25 °C to 2.25 °C (ΔUTCI). These big microclimate differences could cause enormous health risks for the elderly in the process of indoor and outdoor space conversion. The minimal transient change occurred between corridors and indoors. Pearson correlation analysis indicated ΔTa and ΔRH between indoor and outdoor spaces were the primary meteorological factors that influenced the elderly’s willing to use outdoor spaces. The elderly preferred to live in a constant Ta and RH environment. Only when the ΔTa and ΔRH are small enough to resemble a steady-state (ΔUTCI ≤ 0.5 °C), ΔWS and ΔSI could affect the elderly’s choice of using outdoor space. Optimal design strategies were put forward for reducing the transient differences between indoor and outdoor microclimates to inspire the elderly to use outdoor spaces safely, including improving outdoor canopy coverage and indoor mechanical ventilation.
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- 2022
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13. Rapid Atmospheric Leaching of Chalcopyrite Using a Novel Reagent of Trichloroisocyanuric Acid
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Guobao Chen, Jiarui Sun, Hongying Yang, Pengcheng Ma, and Shixiong Gao
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chalcopyrite ,atmospheric leaching ,trichloroisocyanuric acid ,mechanism ,Mineralogy ,QE351-399.2 - Abstract
With the decrease in high-grade chalcopyrite resources, the copper extraction from low-grade chalcopyrite has attracted more and more attention. However, the kinetic rates of chalcopyrite leaching with traditional oxidants are usually very slow due to the formation of the passivation layer. In this study, a novel reagent of chlorinated oxidant, trichloroisocyanuric acid (TCCA), was used to leach chalcopyrite for the first time. The experimental results showed that when the initial oxidant concentration for TCCA was 0.054 mol·L−1, the leaching temperature was kept at 55 °C, and the pH of the pulp was controlled at 1, the oxidation efficiency of Cu can reach above 90% in less than 30 min. Various analyses of chalcopyrite mineral ore and its oxidized residues, such as chemical composition analysis, X-ray diffraction analysis, scanning electron microscopy analysis and X-ray photoelectron spectroscopy, were conducted, respectively. No obvious passivation layer was found on the chalcopyrite surface, though the sulfur product can also be generated during the leaching. Reaction kinetic analysis results showed that the different influence of surface reaction and diffusion process on the dissolution of chalcopyrite is little due to the fast leaching speed. After calculation, the activation energy of the whole leaching reaction is 9.06 kJ·mol−1, much lower than that in other reports. The mechanism was also proposed that TCCA was hydrolyzed in the solution to form hypochlorous acid, which is the strong oxidant, and cyanuric acid, which prevents the formation of a passivation layer. The processing in this study is expected to be applied as a novel method for atmospheric leaching of chalcopyrite.
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- 2021
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14. Hsp90 Relieves Heat Stress-Induced Damage in Mouse Kidneys: Involvement of Antiapoptotic PKM2-AKT and Autophagic HIF-1α Signaling
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Bixia Chen, Bo Yang, Jie Zhu, Jiaxin Wu, Junzhou Sha, Jiarui Sun, Endong Bao, and Xiaohui Zhang
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heat stress ,kidney ,hsp90 ,apoptosis and autophagy ,signal pathway ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Heat stress can particularly affect the kidney because of its high rate of adenosine triphosphate consumption. Competition between apoptosis and autophagy-mediated survival always exists in damaged tissue. And Hsp90 can enhance cellular protection to resist heat stress. However, the relationship between Hsp90 and the above competition and its underlying mechanism in the kidney are unclear. The present study found that heat stress induced obvious histopathological and oxidative injury, which was connected with cellular apoptosis and autophagy in the kidney and was associated with the levels of Hsp90 expression or function. The data showed that during heat stress, Hsp90 activated the PKM2-Akt signaling pathway to exert antiapoptotic effects and induce Hsp70 expression regulated by HSF-1, stimulated autophagy-mediated survival through the HIF-1α-BNIP3/BNIP3L pathway, and finally protected the kidney from heat-stress injury. Moreover, the nuclear translocation of PKM2, (p-) Akt, HSF-1, and HIF-1α was enhanced by heat stress, but only intranuclear p-Akt and HSF-1 were specifically influenced by Hsp90, contributing to regulate the cellular ability of resisting heat-stress damage. Our study provided new insights regarding the molecular mechanism of Hsp90 in the kidney in response to heat-stress injury, possibly contributing to finding new targets for the pharmacological regulation of human or animal acute kidney injury from heat stress in future research.
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- 2020
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15. Aspirin Enhances the Protection of Hsp90 from Heat-Stressed Injury in Cardiac Microvascular Endothelial Cells Through PI3K-Akt and PKM2 Pathways
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Xiaohui Zhang, Bixia Chen, Jiaxin Wu, Junzhou Sha, Bo Yang, Jie Zhu, Jiarui Sun, Jörg Hartung, and Endong Bao
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heat stress ,cardiac microvascular endothelial cells ,hsp90 ,signaling pathway ,aspirin ,Cytology ,QH573-671 - Abstract
Heat stress (HS) often causes sudden death of humans and animals due to heart failure, mainly resulting from the contraction of cardiac microvasculature followed by myocardial ischemia. Cardiac microvascular endothelial cells (CMVECs) play an important role in maintaining vasodilatation. Aspirin (ASA) is well known for its protective abilities of febrile animals. However, there is little knowledge about molecular resistance mechanisms of CMVECs and which role ASA may play in this context. Therefore, we used a heat stress model of rat cardiac microvascular endothelial cell cultures in vitro and investigated the cell injuries and molecular resistance mechanism of CMVECs caused by heat stress, and the effect of aspirin (ASA) on it. HS induced severe pathological damage of CMVECs and cellular oxidative stress and dysfunction of NO release. Hsp90 was proven to be indispensable for resisting HS-injury of CMVECs through PI3K-Akt and PKM2 signaling pathways. Meanwhile, PKM2 functioned in reducing Akt phosphorylation. ASA treatment of CMVECs induced a significant expression of Hsp90, which promoted both Akt and PKM2 signals, which are beneficial for relieving HS damage and maintaining the function of CMVECs. Akt activation also promoted HSF-1 that regulates the expression of Hsp70, which is known to assist Hsp90′s molecular chaperone function and when released to the extracellular liquid to protect myocardial cells from HS damage. To the best of our knowledge, this is the first study to show that HS damages CMVECs and the protection mechanism of Hsp90 on it, and that ASA provides a new potential strategy for regulating cardiac microcirculation preventing HS-induced heart failure.
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- 2020
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16. Ovarian Toxicity in Female Rats after Oral Administration of Melamine or Melamine and Cyanuric Acid.
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Jiarui Sun, Xinchen Zhang, Yinan Cao, Qiling Zhao, Endong Bao, and Yingjun Lv
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Medicine ,Science - Abstract
Although the toxicity of melamine to the kidneys and testes is well known, few studies have investigated the effects of melamine on female reproductive organs. Therefore, this study explores the effects of oral administration melamine or melamine and cyanuric acid for 28 days on the ovaries of female rats. Rats that were exposed to the mixture exhibited reduced ovarian and uterine weights, a shorter estrous cycle, and reduced serum estrogen and progesterone levels compared to rats that were exposed to melamine and control rats. Furthermore, morphological analysis revealed pathological changes in the ovaries of rats exposed to melamine or the mixture, such as more atretic follicles and necrosis of oocytes and granulosa cells. TUNEL staining revealed that the exposed groups had a higher proportion of TUNEL-positive granulosa cells than the control group, and the mRNA expressions of SOD1, GPX1, GPX2, P450scc, 17β-HSD I, and 17β-HSD II were reduced in the exposure groups compared with the control group. These results indicated that exposure to melamine alone or to the melamine-cyanuric acid mixture could damage the ovaries in rats.
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- 2016
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17. Identifying the Potential Users of Community Archives: A Case Study of the History of the Chinese 30 Years Project.
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Tianji Jiang and Jiarui Sun
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- 2024
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18. Exploring Creativity of Designers in Children's Library Navigation APP Design with Design Thinking Workshop.
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Chinlun Ho, Jiarui Sun, and Kochiu Wu
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- 2023
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19. Dynamic Graph Node Classification via Time Augmentation.
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Jiarui Sun, Mengting Gu, Chin-Chia Michael Yeh, Yujie Fan, Girish Chowdhary 0001, and Wei Zhang 0189
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- 2022
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20. Hierarchical and Multi-Level Cost Aggregation For Stereo Matching.
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Wei Guo, Ziyu Zhu, Fukun Xia, Jiarui Sun, and Yong Zhao 0010
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- 2021
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21. Predicting Lymph Node Metastasis Using Histopathological Images Based on Multiple Instance Learning With Deep Graph Convolution.
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Yu Zhao 0009, Fan Yang 0081, Yuqi Fang, Hailing Liu, Niyun Zhou, Jun Zhang 0018, Jiarui Sun, Sen Yang 0006, Bjoern H. Menze, Xinjuan Fan, and Jianhua Yao 0001
- Published
- 2020
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22. ACNet: Aggregated Channels Network for Automated Mitosis Detection.
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Kaili Cheng, Jiarui Sun, Xuesong Chen, Yanbo Ma, Mengjie Bai, and Yong Zhao 0010
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- 2019
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23. CHS-NET: A Cascaded Neural Network with Semi-Focal Loss for Mitosis Detection.
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Yanbo Ma, Jiarui Sun, Qiuhao Zhou, Kaili Cheng, Xuesong Chen, and Yong Zhao 0010
- Published
- 2018
24. Depth Super-Resolution Using Joint Adaptive Weighted Least Squares And Patching Gradient.
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Yuyuan Li, Jiarui Sun, Bingshu Wang, and Yong Zhao 0010
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- 2018
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25. A Convolutional Neural Network Combined with Color Deconvolution for Mitosis Detection.
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Mengjie Bai, Jiarui Sun, Kaili Cheng, Jingting Luo, and Yong Zhao 0010
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- 2018
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26. Phase stability and thermophysical properties of CeO2-Re2O3 (Re Eu, Gd, Dy, Y, Er, Yb) co-stabilised zirconia
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Jinshuang Wang, Mengdi Chen, Jiarui Sun, Mengqiu Hu, Xianjun Lu, Chaoxi Shu, Hao Zhang, and Yinghui Wang
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Process Chemistry and Technology ,Materials Chemistry ,Ceramics and Composites ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials - Published
- 2023
27. Village Lunatics
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Jiarui Sun
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Cultural Studies ,History ,Literature and Literary Theory ,Visual Arts and Performing Arts - Published
- 2023
28. A three-way clustering method based on improved density peaks algorithm and boundary detection graph
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Chen Sun, Mingjing Du, Jiarui Sun, Kangkang Li, and Yongquan Dong
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Artificial Intelligence ,Applied Mathematics ,Software ,Theoretical Computer Science - Published
- 2023
29. Numerical Analysis of Residual Strength in the Perforated Casing of Ultra Deep Wells
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Yanxian Wu, Shouming Zhong, Zhigang Guan, Lin Song, Kun Li, Jiarui Sun, Yuqiang Xu, Maochuan Tu, Chaobin Fan, and Jinbin Yang
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General Materials Science - Published
- 2023
30. Study on the lubrication film formation and characteristics of different graphite seal composites
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Qili Wang, Jiarui Sun, Mingquan Yu, and Yuehu Chen
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Mechanics of Materials ,Mechanical Engineering - Published
- 2022
31. Automatic taxonomic identification based on the Fossil Image Dataset (>415,000 images) and deep convolutional neural networks
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Xiaokang Liu, Shouyi Jiang, Rui Wu, Wenchao Shu, Jie Hou, Yongfang Sun, Jiarui Sun, Daoliang Chu, Yuyang Wu, and Haijun Song
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Ecology ,Paleontology ,General Agricultural and Biological Sciences ,Ecology, Evolution, Behavior and Systematics - Abstract
The rapid and accurate taxonomic identification of fossils is of great significance in paleontology, biostratigraphy, and other fields. However, taxonomic identification is often labor-intensive and tedious, and the requisition of extensive prior knowledge about a taxonomic group also requires long-term training. Moreover, identification results are often inconsistent across researchers and communities. Accordingly, in this study, we used deep learning to support taxonomic identification. We used web crawlers to collect the Fossil Image Dataset (FID) via the Internet, obtaining 415,339 images belonging to 50 fossil clades. Then we trained three powerful convolutional neural networks on a high-performance workstation. The Inception-ResNet-v2 architecture achieved an average accuracy of 0.90 in the test dataset when transfer learning was applied. The clades of microfossils and vertebrate fossils exhibited the highest identification accuracies of 0.95 and 0.90, respectively. In contrast, clades of sponges, bryozoans, and trace fossils with various morphologies or with few samples in the dataset exhibited a performance below 0.80. Visual explanation methods further highlighted the discrepancies among different fossil clades and suggested similarities between the identifications made by machine classifiers and taxonomists. Collecting large paleontological datasets from various sources, such as the literature, digitization of dark data, citizen-science data, and public data from the Internet may further enhance deep learning methods and their adoption. Such developments will also possibly lead to image-based systematic taxonomy to be replaced by machine-aided classification in the future. Pioneering studies can include microfossils and some invertebrate fossils. To contribute to this development, we deployed our model on a server for public access at www.ai-fossil.com.
- Published
- 2022
32. Nuclear bodies protect phase separated proteins from degradation in stressed proteome
- Author
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Kwan Ho Jung, Jiarui Sun, Chia-Heng Hsiung, Xiaojun Lance Lian, Yu Liu, and Xin Zhang
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Article - Abstract
RNA-binding proteins (RBPs) containing intrinsically disordered domains undergo liquid-liquid phase separation to form nuclear bodies under stress conditions. This process is also connected to the misfolding and aggregation of RBPs, which are associated with a series of neurodegenerative diseases. However, it remains elusive how folding states of RBPs changes upon the formation and maturation of nuclear bodies. Here, we describe SNAP-tag based imaging methods to visualize the folding states of RBPs in live cells via time-resolved quantitative microscopic analyses of their micropolarity and microviscosity. Using these imaging methods in conjunction with immunofluorescence imaging, we demonstrate that RBPs, represented by TDP-43, initially enters the PML nuclear bodies in its native state upon transient proteostasis stress, albeit it begins to misfolded during prolonged stress. Furthermore, we show that heat shock protein 70 co-enters the PML nuclear bodies to prevent the degradation of TDP-43 from the proteotoxic stress, thus revealing a previously unappreciated protective role of the PML nuclear bodies in the prevention of stress-induced degradation of TDP-43. In summary, our imaging methods described in the manuscript, for the first time, reveal the folding states of RBPs, which were previously challenging to study with conventional methods in nuclear bodies of live cells. This study uncovers the mechanistic correlations between the folding states of a protein and functions of nuclear bodies, in particular PML bodies. We envision that the imaging methods can be generally applied to elucidating the structural aspects of other proteins that exhibit granular structures under biological stimulus.
- Published
- 2023
33. A novel regression method for the analysis of multireader multicase‐free‐response receiver operating characteristics studies
- Author
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Xueqing Liu, Jiarui Sun, and Xiao‐Hua Zhou
- Subjects
Statistics and Probability ,ROC Curve ,Epidemiology ,Humans ,Regression Analysis ,Computer Simulation ,Diagnosis, Computer-Assisted ,Radiology - Abstract
In diagnostic radiology, the multireader multicase (MRMC) design and the free-response receiver operating characteristics (FROC) method are often used in combination. The cross-correlated data generated by the MRMC-FROC study leads to difficulties in the corresponding analysis, and the need to include covariates in the model further complicates the subsequent analysis. In this paper, we propose a regression approach based on three new measures with good interpretability. The correlation structure of the original test results is taken directly into account in the estimation procedure. The proposed method also allows the inclusion of continuous or discrete covariates. Consistent and asymptotically normal estimators are derived for the new measures. Simulation studies are conducted to evaluate the performance of the proposed approach. The simulation results show that the regression approach performs well under a wide range of scenarios. We also apply the proposed regression approach to a diagnostic study of computer-aided diagnosis in lung cancer.
- Published
- 2022
34. Corrigendum: Insights into plastic biodegradation: community composition and functional capabilities of the superworm (Zophobas morio) microbiome in styrofoam feeding trials
- Author
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Jiarui Sun, Apoorva Prabhu, Samuel T. N. Aroney, and Christian Rinke
- Subjects
General Medicine - Published
- 2022
35. Binary microlensing with plasma environment -- Star and planet
- Author
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Jiarui Sun, Xinzhong Er, and Oleg Yu Tsupko
- Subjects
Earth and Planetary Astrophysics (astro-ph.EP) ,Astrophysics - Solar and Stellar Astrophysics ,Space and Planetary Science ,Astrophysics of Galaxies (astro-ph.GA) ,FOS: Physical sciences ,Astronomy and Astrophysics ,Astrophysics - Astrophysics of Galaxies ,Solar and Stellar Astrophysics (astro-ph.SR) ,Astrophysics - Earth and Planetary Astrophysics - Abstract
Galactic microlensing has been widely used to study the star and planet. The stellar wind plays an important role in the formation, environment and habitability of the planet. In this work we study a binary microlensing system including the stellar wind, i.e. a star with plasma environment plus a planet. Plasma surrounding the main lens causes chromatic deflection of the light rays, in addition to the gravitational one. As a result, such a lensing system can generate complicated caustics which depends on the different lensing parameters. In this work we study the magnification curves for different traces of the background source and compare the transitions of the formation of ``hill and hole'' in the magnification curves. We find that the plasma will cause extra caustic, shrink the central caustics generated by the star and push the caustic by the planet outwards. Observations and modelling of binary microlensing curves with taking plasma effect into account can provide a potential method to study plasma environment of the stars. In case of a high plasma density of the stellar wind, the plasma lensing effects will be observable in the sub-mm band., 11 pages, MNRAS
- Published
- 2022
36. M3W: Multistep Three-Way Clustering
- Author
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Mingjing Du, Jingqi Zhao, Jiarui Sun, and Yongquan Dong
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Artificial Intelligence ,Computer Networks and Communications ,Software ,Computer Science Applications - Abstract
Three-way clustering has been an active research topic in the field of cluster analysis in recent years. Some efforts are focused on the technique due to its feasibility and rationality. We observe, however, that the existing three-way clustering algorithms struggle to obtain more information and limit the fault tolerance excessively. Moreover, although the one-step three-way allocation based on a pair of fixed, global thresholds is the most straightforward way to generate the three-way cluster representations, the clusters derived from a pair of global thresholds cannot exactly reveal the inherent clustering structure of the dataset, and the threshold values are often difficult to determine beforehand. Inspired by sequential three-way decisions, we propose an algorithm, called multistep three-way clustering (M3W), to address these issues. Specifically, we first use a progressive erosion strategy to construct a multilevel structure of data, so that lower levels (or external layers) can gather more available information from higher levels (or internal layers). Then, we further propose a multistep three-way allocation strategy, which sufficiently considers the neighborhood information of every eroded instance. We use the allocation strategy in combination with the multilevel structure to ensure that more information is gradually obtained to increase the probability of being assigned correctly, capturing adaptively the inherent clustering structure of the dataset. The proposed algorithm is compared with eight competitors using 18 benchmark datasets. Experimental results show that M3W achieves superior performance, verifying its advantages and effectiveness.
- Published
- 2022
37. Three families of Asgard archaeal viruses identified in metagenome-assembled genomes
- Author
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Sofia Medvedeva, Jiarui Sun, Natalya Yutin, Eugene V. Koonin, Takuro Nunoura, Christian Rinke, Mart Krupovic, Virologie des archées - Archaeal Virology, Université Paris Cité (UPCité)-Microbiologie Intégrative et Moléculaire (UMR6047), Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Skolkovo Institute of Science and Technology [Moscow] (Skoltech), University of Queensland [Brisbane], National Institutes of Health [Bethesda] (NIH), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), The work in the M.K. laboratory is supported by grants from l’Agence Nationale de la Recherche (nos. ANR-20-CE20-0009-02 and ANR-21-CE11-0001-01) and Ville de Paris (Emergence(s) project MEMREMA). S.M. was supported by the Metchnikov fellowship from Campus France and Russian Science Foundation (grant no. 19-74-20130). N.Y. and E.V.K. are supported by the Intramural Research Program of the National Institutes of Health of the USA (National Library of Medicine). The work of C.R. and J.S. is funded by the Australian Research Council Future Fellow Award (no. FT170100213, to CR). T.N. was partly supported by MEXT KAKENHI (grant nos. JP19H05684 within JP19H05679 (Post-Koch Ecology) and 16H06429, 16K21723 and 16H06437 (NeoVirology))., ANR-20-CE20-0009,VIROMET,Devoiler le virome des archées methanogenes(2020), and ANR-21-CE11-0001,ArcFus,Protéines de classe II de fusion membranaire chez les archées(2021)
- Subjects
Microbiology (medical) ,Immunology ,[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology ,Genetics ,Cell Biology ,Applied Microbiology and Biotechnology ,Microbiology - Abstract
International audience; Asgardarchaeota harbour many eukaryotic signature proteins and are widely considered to represent the closest archaeal relatives of eukaryotes. Whether similarities between Asgard archaea and eukaryotes extend to their viromes remains unknown. Here we present 20 metagenome-assembled genomes of Asgardarchaeota from deep-sea sediments of the basin off the Shimokita Peninsula, Japan. By combining a CRISPR spacer search of metagenomic sequences with phylogenomic analysis, we identify three family-level groups of viruses associated with Asgard archaea. The first group, verdandiviruses, includes tailed viruses of the class Caudoviricetes (realm Duplodnaviria); the second, skuldviruses, consists of viruses with predicted icosahedral capsids of the realm Varidnaviria; and the third group, wyrdviruses, is related to spindle-shaped viruses previously identified in other archaea. More than 90% of the proteins encoded by these viruses of Asgard archaea show no sequence similarity to proteins encoded by other known viruses. Nevertheless, all three proposed families consist of viruses typical of prokaryotes, providing no indication of specific evolutionary relationships between viruses infecting Asgard archaea and eukaryotes. Verdandiviruses and skuldviruses are likely to be lytic, whereas wyrdviruses potentially establish chronic infection and are released without host cell lysis. All three groups of viruses are predicted to play important roles in controlling Asgard archaea populations in deep-sea ecosystems.
- Published
- 2022
38. Insights into plastic biodegradation: community composition and functional capabilities of the superworm (
- Author
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Jiarui, Sun, Apoorva, Prabhu, Samuel T N, Aroney, and Christian, Rinke
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Coleoptera ,Larva ,Microbiota ,Animals ,Polystyrenes ,Plastics - Abstract
Plastics are inexpensive and widely used organic polymers, but their high durability hinders biodegradation. Polystyrene, including extruded polystyrene (also known as styrofoam), is among the most commonly produced plastics worldwide and is recalcitrant to microbial degradation. In this study, we assessed changes in the gut microbiome of superworms (
- Published
- 2022
39. Elastica: A Compliant Mechanics Environment for Soft Robotic Control
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Girish Chowdhary, Tejaswin Parthasarathy, Arman Tekinalp, Jiarui Sun, Noel M. Naughton, and Mattia Gazzola
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0209 industrial biotechnology ,Context model ,Robot kinematics ,Control and Optimization ,Continuum mechanics ,Computer science ,Mechanical Engineering ,Distributed computing ,Control (management) ,Biomedical Engineering ,Soft robotics ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Computer Science Applications ,Human-Computer Interaction ,020901 industrial engineering & automation ,Action (philosophy) ,Artificial Intelligence ,Control and Systems Engineering ,Robot ,Reinforcement learning ,Computer Vision and Pattern Recognition ,0210 nano-technology - Abstract
Soft robots are notoriously hard to control. This is partly due to the scarcity of models and simulators able to capture their complex continuum mechanics, resulting in a lack of control methodologies that take full advantage of body compliance. Currently available methods are either too computational demanding or overly simplistic in their physical assumptions, leading to a paucity of available simulation resources for developing such control schemes. To address this, we introduce Elastica, an open-source simulation environment modeling the dynamics of soft, slender rods that can bend, twist, shear, and stretch. We couple Elastica with five state-of-the-art reinforcement learning (RL) algorithms (TRPO, PPO, DDPG, TD3, and SAC). We successfully demonstrate distributed, dynamic control of a soft robotic arm in four scenarios with both large action spaces, where RL learning is difficult, and small action spaces, where the RL actor must learn to interact with its environment. Training converges in 10 million policy evaluations with near real-time evaluation of learned policies.
- Published
- 2021
40. Alterations in the human oral and gut microbiomes and lipidomics in COVID-19
- Author
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Haifeng Lu, Bingjie Li, Jiarui Sun, Ang Li, Quancheng Kan, Xinhua Chen, Zhigang Ren, Xiaolong Chen, Wenli Liu, Ranran Sun, Ling Wang, Xiaorui Liu, Zhongwen Wu, Xuemei Wang, Guangying Cui, Haiyu Wang, Chuansong Hu, Chao Liu, Benchen Rao, Zujiang Yu, Hongyan Ren, Hua Zhang, Hong Luo, Chengyu Yuan, and Lanjuan Li
- Subjects
Adult ,Male ,0301 basic medicine ,China ,intestinal microbiology ,Biology ,Microbiology ,Cohort Studies ,Feces ,03 medical and health sciences ,0302 clinical medicine ,lipid metabolism ,Lipidomics ,medicine ,Humans ,Microbiome ,Gut Microbiota ,Mouth ,medicine.diagnostic_test ,Gastrointestinal Microbiome ,Gastroenterology ,Case-control study ,COVID-19 ,Lipid metabolism ,Middle Aged ,Lipids ,030104 developmental biology ,Case-Control Studies ,Biomarker (medicine) ,Female ,030211 gastroenterology & hepatology ,Oral Microbiome ,Lipid profile - Abstract
ObjectiveTo characterise the oral microbiome, gut microbiome and serum lipid profiles in patients with active COVID-19 and recovered patients; evaluate the potential of the microbiome as a non-invasive biomarker for COVID-19; and explore correlations between the microbiome and lipid profile.DesignWe collected and sequenced 392 tongue-coating samples, 172 faecal samples and 155 serum samples from Central China and East China. We characterised microbiome and lipid molecules, constructed microbial classifiers in discovery cohort and verified their diagnostic potential in 74 confirmed patients (CPs) from East China and 37 suspected patients (SPs) with IgG positivity.ResultsOral and faecal microbial diversity was significantly decreased in CPs versus healthy controls (HCs). Compared with HCs, butyric acid-producing bacteria were decreased and lipopolysaccharide-producing bacteria were increased in CPs in oral cavity. The classifiers based on 8 optimal oral microbial markers (7 faecal microbial markers) achieved good diagnostic efficiency in different cohorts. Importantly, diagnostic efficacy reached 87.24% in the cross-regional cohort. Moreover, the classifiers successfully diagnosed SPs with IgG antibody positivity as CPs, and diagnostic efficacy reached 92.11% (98.01% of faecal microbiome). Compared with CPs, 47 lipid molecules, including sphingomyelin (SM)(d40:4), SM(d38:5) and monoglyceride(33:5), were depleted, and 122 lipid molecules, including phosphatidylcholine(36:4p), phosphatidylethanolamine (PE)(16:0p/20:5) and diglyceride(20:1/18:2), were enriched in confirmed patients recovery.ConclusionThis study is the first to characterise the oral microbiome in COVID-19, and oral microbiomes and lipid alterations in recovered patients, to explore their correlations and to report the successful establishment and validation of a diagnostic model for COVID-19.
- Published
- 2021
41. Agaricus bisporus-Derived Glucosamine Hydrochloride Facilitates Skeletal Injury Repair through Bmp Signaling in Zebrafish Osteoporosis Model
- Author
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Wenjuan Zhang, Yuqin Sun, Tingting Jia, Jinmei Lin, Lisheng Cai, Jiarui Sun, Shunyou Cai, Yutian Pan, Yu Xue, Yi-Xuan Chen, Zhichao Lin, Peng Wei, Yi Su, Qici Wu, and Gulimiran Alitongbieke
- Subjects
Pharmaceutical Science ,Bone morphogenetic protein ,01 natural sciences ,Analytical Chemistry ,Cell wall ,chemistry.chemical_compound ,Chitin ,Agaricus ,Drug Discovery ,medicine ,Receptor ,Zebrafish ,Pharmacology ,biology ,010405 organic chemistry ,Chemistry ,Cartilage ,Regeneration (biology) ,Organic Chemistry ,biology.organism_classification ,0104 chemical sciences ,Cell biology ,010404 medicinal & biomolecular chemistry ,medicine.anatomical_structure ,Complementary and alternative medicine ,Molecular Medicine - Abstract
Glucosamine hydrochloride (GAH), one of the most basic and important derivatives of chitin, is obtained by hydrolysis of chitin in concentrated hydrochloric acid. At present, little is known about how GAH functions in skeletal development. In this report, we demonstrate that GAH, extracted from the cell wall of Agaricus bisporus, acts in a dose-dependent manner to promote not only cartilage and bone development in larvae but also caudal fin regeneration in adult fish. Furthermore, GAH treatment causes a significant increase in expression of bone-related marker genes, indicating its important role in promoting skeletal development. We show that in both larval and adult osteoporosis models induced by high iron osteogenic defects are significantly ameliorated after treatment with GAH, which regulates expression of a series of bone-related genes. Finally, we demonstrate that GAH promotes skeletal development and injury repair through bone morphogenetic protein (Bmp) signaling, and it works at the downstream of the receptor level. Taken together, our findings not only provide a strong research foundation and strategy for the screening of natural osteoporosis drugs and product development using a zebrafish model but also establish the potential for the development of Agaricus bisporus-derived GAH as a new drug for osteoporosis treatment.
- Published
- 2021
42. Insights into plastic biodegradation: community composition and functional capabilities of the superworm (Zophobas morio) microbiome in styrofoam feeding trials
- Author
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Jiarui Sun, Apoorva Prabhu, Samuel Aroney, and Christian Rinke
- Abstract
Plastics are inexpensive and widely used organic polymers, but their high durability hinders biodegradation. Polystyrene, including extruded polystyrene also known as styrofoam, is among the most commonly produced plastics worldwide and is recalcitrant to microbial degradation. In this study, we assessed changes in the gut microbiome of superworms (Zophobas morio) reared on bran, polystyrene, or under starvation conditions over a three weeks’ time period. Superworms on all diets were able to complete their life cycle to pupae and imago, although superworms reared on polystyrene had minimal weight gains, resulting in lower pupation rates. The change in microbial gut communities from baseline differed considerably between diet groups, with polystyrene and starvation groups characterized by a loss of microbial diversity and the presence of opportunistic pathogens. Inferred microbial functions enriched in the polystyrene group included transposon movements, membrane restructuring, and adaptations to oxidative stress. We detected several encoded enzymes with reported polystyrene and styrene degradation abilities, supporting previous reports of polystyrene degrading bacteria in the superworm gut. By recovering metagenome-assembled genomes (MAGs) we linked phylogeny and functions and identified genera includingPseudomonas, RhodococcusandCorynebacterium, that possess genes associated with polystyrene degradation. In conclusion, our results provide the first metagenomic insights into the metabolic pathways used by the gut microbiome of superworms to degrade polystyrene. Our results also confirm that superworms can survive on polystyrene feed, however, this diet has considerable negative impacts on host gut microbiome diversity and health.Impact StatementIncreasing plastic pollution is a major environmental problem, and a recently proposed way to counteract this trend is to embrace a circular economy, in which used materials are recycled, rather than disposed of. An important step to facilitate this process is to invent new approaches for upcycling of plastic waste to desirable consumer products. Microbial plastic degradation and conversion is likely to play a considerable part in shaping a circular economy, by engineering microbes or their enzymes to bio-upcycle plastic waste. A first step towards actualizing this goal is to identify microbes that can degrade polystyrene and to investigate the enzymes and pathways involved. Our study represents the first metagenomic analysis of an insect gut microbiome on a polystyrene diet. It identifies bacteria with polystyrene and styrene degrading abilities, and infers enzymes and pathways involved in these reactions. Therefore, our results contribute towards understanding microbial polystyrene degradation and will provide a base for future investigations into microbial upcycling of plastic waste.
- Published
- 2022
43. Multi-Objective Optimization for Energy Absorption of Carbon Fiber-Reinforced Plastic/Aluminum Hybrid Circular Tube under Both Transverse and Axial Loading
- Author
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Boyan Dong, Yibin Zha, Xuehui Gan, Jiarui Sun, Qihua Ma, Ming Cai, and Tianjun Zhou
- Subjects
010302 applied physics ,Filament winding ,Materials science ,Three point flexural test ,Mechanical Engineering ,02 engineering and technology ,Bending ,Fibre-reinforced plastic ,021001 nanoscience & nanotechnology ,01 natural sciences ,Finite element method ,Transverse plane ,Mechanics of Materials ,0103 physical sciences ,General Materials Science ,Fiber ,Tube (container) ,Composite material ,0210 nano-technology - Abstract
In order to obtain a hybrid tube with better energy absorption performance under both three-point bending and axial compression, multi-objective optimization for energy absorption of carbon fiber-reinforced plastics (CFRP)/aluminum (CFRP/AL) hybrid circular tubes was presented in this paper. Experiments and finite element model (FEM) of the hybrid circular tubes subjected to three-point bending and axial compression were performed, and the finite element models were validated. The effects of fiber filament winding angle (θ) and aluminum wall thickness (t) on energy absorption characteristic of the hybrid tube under three-point bending and axial compressive were discussed by FEM. The results show that θ and t have different effects on the specific energy absorption (SEA) of the hybrid tube under three-point bending and axial compression, respectively. A five-order polynomial response surface (PRS) and artificial neural network (ANN) were used to connect variables (θ and t) and the objective (SEA), respectively. It was found that the fitting accuracy of ANN was better. The non-dominated sorting genetic algorithm-II (NSGAII) was applied to obtain optimal results in the form of Pareto frontier solutions. The specific energy absorption of the optimized hybrid tube (θ = 24°, t = 1.45 mm) verified by simulation under three-point bending and axial compression is 1.11 kN/kg and 45.59 kN/kg, respectively. The hybrid tube exhibits better specific energy absorption under both loads.
- Published
- 2020
44. Experiment and modified model for CFRP/steel hybrid tubes under the quasi-static transverse loading
- Author
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Xuehui Gan, Zeyu Sun, Jiarui Sun, and Qihua Ma
- Subjects
Materials science ,Mechanical Engineering ,Composite number ,020101 civil engineering ,Transportation ,02 engineering and technology ,Industrial and Manufacturing Engineering ,0201 civil engineering ,Transverse plane ,020303 mechanical engineering & transports ,0203 mechanical engineering ,Energy absorption ,Composite material ,Deformation (engineering) ,Quasistatic process - Abstract
Composite/metal hybrid structure has both the advantages of light weight and high strength of composite materials and the advantages of low cost and easy connection of metals, which has great prosp...
- Published
- 2020
45. Correction: Recoding of stop codons expands the metabolic potential of two novel Asgardarchaeota
- Author
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Jiarui Sun, Paul N. Evans, Emma J. Gagen, Ben J. Woodcroft, Brian P. Hedlund, Tanja Woyke, Philip Hugenholtz, and Christian Rinke
- Subjects
General Medicine - Published
- 2022
46. Automatic video analysis framework for exposure region recognition in X-ray imaging automation
- Author
-
Jiarui Sun, Zhan Wu, Zechen Yu, Huanji Chen, Changping Du, Liang Xu, Jian Zhong, Juan Feng, Gouenou Coatrieux, Jean-Louis Coatrieux, Yang Chen, Nanjing Southeast University (SEU), Shanghai United Imaging Healthcare Co Ltd, Laboratoire de Traitement de l'Information Medicale (LaTIM), Université de Brest (UBO)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre Hospitalier Régional Universitaire de Brest (CHRU Brest)-IMT Atlantique (IMT Atlantique), Institut Mines-Télécom [Paris] (IMT)-Institut Mines-Télécom [Paris] (IMT)-Institut Brestois Santé Agro Matière (IBSAM), Université de Brest (UBO), Département lmage et Traitement Information (IMT Atlantique - ITI), IMT Atlantique (IMT Atlantique), Institut Mines-Télécom [Paris] (IMT)-Institut Mines-Télécom [Paris] (IMT), Université de Rennes (UR), Science and Technology Program of Guangdong (Grant Number: 2018B030333001)States Key Project of Research and Development Plan (Grant Number: 2017YFA0104302 and 2017YFC0109202)10.13039/501100001809-National Natural Science Foundation of China (Grant Number: 61871117), and Jonchère, Laurent
- Subjects
X-Rays ,[SDV]Life Sciences [q-bio] ,X-ray imaging ,deep learning ,Torso ,Health Informatics ,Image recognition ,computer vision ,Workflow ,Computer Science Applications ,Imaging ,[SDV] Life Sciences [q-bio] ,Radiography ,Diagnostic radiography ,Automation ,Health Information Management ,exposure region recognition ,X-ray imaging automation ,video analysis ,Humans ,Electrical and Electronic Engineering ,Computed tomography ,Protocols - Abstract
International audience; The deep learning-based automatic recognition of the scanning or exposing region in medical imaging automation is a promising new technique, which can decrease the heavy workload of the radiographers, optimize imaging workflow and improve image quality. However, there is little related research and practice in X-ray imaging. In this paper, we focus on two key problems in X-ray imaging automation: automatic recognition of the exposure moment and the exposure region. Consequently, we propose an automatic video analysis framework based on the hybrid model, approaching real-time performance. The framework consists of three interdependent components: Body Structure Detection, Motion State Tracing, and Body Modeling. Body Structure Detection disassembles the patient to obtain the corresponding body keypoints and body Bboxes. Combining and analyzing the two different types of body structure representations is to obtain rich spatial location information about the patient body structure. Motion State Tracing focuses on the motion state analysis of the exposure region to recognize the appropriate exposure moment. The exposure region is calculated by Body Modeling when the exposure moment appears. A large-scale dataset for X-ray examination scene is built to validate the performance of the proposed method. Extensive experiments demonstrate the superiority of the proposed method in automatically recognizing the exposure moment and exposure region. This paradigm provides the first method that can enable automatically and accurately recognize the exposure region in X-ray imaging without the help of the radiographer.
- Published
- 2022
47. Research On The Fractal and Percolation Characteristics of Coal-Based Porous Media For Filtration and Impregnation
- Author
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Shengcheng Fei, Yuehu Chen, Jiarui Sun, Yuyan Qian, Sheng Yan, and Qili Wang
- Subjects
Fractal ,Materials science ,Chemical engineering ,law ,business.industry ,Percolation ,Coal ,Porous medium ,business ,Filtration ,law.invention - Abstract
In order to distinguish the difference in the heterogeneous fractal structure of porous graphite used for filtration and impregnation, the fractal dimensions obtained through the mercury intrusion porosimetry (MIP) along with the fractal theory were used to calculate the volumetric FD of the graphite samples. The FD expression of the tortuosity along with all parameters from MIP test was optimized to simplify the calculation. In addition, the percolation evolution process of mercury in the porous media was analyzed in combination with the experimental data. As indicated in the analysis, the FDs in the backbone formation regions of sample vary from 2.695 to 2.984, with 2.923 to 2.991 in the percolation regions and 1.224 to 1.544 in the tortuosity. According to the MIP test, the mercury distribution in porous graphite manifested a transitional process from local aggregation, gradual expansion, and infinite cluster connection to global connection.
- Published
- 2021
48. Hierarchical and Multi-Level Cost Aggregation For Stereo Matching
- Author
-
Ziyu Zhu, Wei Guo, Fukun Xia, Yong Zhao, and Jiarui Sun
- Subjects
business.industry ,Computer science ,Cost aggregation ,Stereo matching ,Computer vision ,Artificial intelligence ,business - Published
- 2021
49. Recoding of stop codons expands the metabolic potential of two novel Asgardarchaeota lineages
- Author
-
Paul N. Evans, Philip Hugenholtz, Jiarui Sun, Christian Rinke, Tanja Woyke, Emma J. Gagen, Ben J. Woodcroft, and Brian P. Hedlund
- Subjects
0303 health sciences ,030306 microbiology ,Phylum ,Lineage (evolution) ,Pyrrolysine ,General Medicine ,Biology ,biology.organism_classification ,Genetic code ,Stop codon ,03 medical and health sciences ,Monophyly ,chemistry.chemical_compound ,chemistry ,Evolutionary biology ,Taxonomic rank ,030304 developmental biology ,Archaea - Abstract
Asgardarchaeota have been proposed as the closest living relatives to eukaryotes, and a total of 72 metagenome-assembled genomes (MAGs) representing six primary lineages in this archaeal phylum have thus far been described. These organisms are predicted to be fermentative heterotrophs contributing to carbon cycling in sediment ecosystems. Here, we double the genomic catalogue of Asgardarchaeota by obtaining 71 MAGs from a range of habitats around the globe, including the deep subsurface, brackish shallow lakes, and geothermal spring sediments. Phylogenomic inferences followed by taxonomic rank normalisation confirmed previously established Asgardarchaeota classes and revealed four additional lineages, two of which were consistently recovered as monophyletic classes. We therefore propose the names Candidatus Sifarchaeia class nov. and Ca. Jordarchaeia class nov., derived from the gods Sif and Jord in Norse mythology. Metabolic inference suggests that both classes represent hetero-organotrophic acetogens, which also have the ability to utilise methyl groups such as methylated amines, with acetate as the probable end product in remnants of a methanogen-derived core metabolism. This inferred mode of energy conservation is predicted to be enhanced by genetic code expansions, i.e., stop codon recoding, allowing the incorporation of the rare 21st and 22nd amino acids selenocysteine (Sec) and pyrrolysine (Pyl). We found Sec recoding in Jordarchaeia and all other Asgardarchaeota classes, which likely benefit from increased catalytic activities of Sec-containing enzymes. Pyl recoding, on the other hand, is restricted to Sifarchaeia in the Asgardarchaeota, making it the first reported non-methanogenic archaeal lineage with an inferred complete Pyl machinery, likely providing members of this class with an efficient mechanism for methylamine utilisation. Furthermore, we identified enzymes for the biosynthesis of ester-type lipids, characteristic of bacteria and eukaryotes, in both newly described classes, supporting the hypothesis that mixed ether-ester lipids are a shared feature among Asgardarchaeota.
- Published
- 2021
50. An Analysis of Factors Affecting Chinese Women's Work-Life Balance : In the context of long working hours and shared parental leave policy
- Author
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Jiarui, Sun
- Published
- 2022
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