9 results on '"Javier Medina F"'
Search Results
2. Revamping Space-omics in Europe
- Author
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Madrigal, Pedro, Gabel, Alexander, Villacampa, Alicia, Manzano, Aranzazu, Deane, Colleen S., Bezdan, Daniela, Carnero-Diaz, Eugenie, Javier Medina, F., Hardiman, Gary, Grosse, Ivo, Szewczyk, Nathaniel, Weging, Silvio, Giacomello, Stefania, Harridge, Stephen D. R., Morris-Paterson, Tessa, Cahill, Thomas, da Silveira, Willian A., Herranz, Raul, Madrigal, Pedro, Gabel, Alexander, Villacampa, Alicia, Manzano, Aranzazu, Deane, Colleen S., Bezdan, Daniela, Carnero-Diaz, Eugenie, Javier Medina, F., Hardiman, Gary, Grosse, Ivo, Szewczyk, Nathaniel, Weging, Silvio, Giacomello, Stefania, Harridge, Stephen D. R., Morris-Paterson, Tessa, Cahill, Thomas, da Silveira, Willian A., and Herranz, Raul
- Abstract
QC 20210111
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- 2020
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3. Optimal clinorotation settings for microgravity simulation in A. thaliana seedlings
- Author
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Villacampa, A., Sora, L., Javier Medina, F., Malgorzata Ciska, Ministerio de Economía y Competitividad (España), Sora, Ludovico, Medina, F. Javier, Ciska, Malgorzata, Sora, Ludovico [0000-0002-6520-6443], Medina, F. Javier [0000-0002-0866-7710], and Ciska, Malgorzata [0000-0002-6514-9493]
- Subjects
Arabidopsis thaliana ,Root ,Meristem ,GBF ,Auxin ,Microgravity ,Clinorotation ,Clinostat ,Statoliths - Abstract
10 p.-7 fig.-3 tab. 69th International Astronautical Congress (IAC), Bremen, Germany, 1-5 October 2018, Due to high cost and low availability of space (real microgravity) experiments, ground based facilities (GBF) simulating microgravity are commonly used. The clinostat is one of the most widely used GBF in simulation experiments. Up to date, there is no clear set of rules on how to use 2D clinostats concerning the speed of rotation. With the objective of defining the optimal settings, we have used a mathematical model and compared the physiological response of A. thaliana 5-day-old seedlings to two speeds of the 2D clinostat: low- (1 rpm) and high-speed (60 rpm) for short (1, 2, 3 hours) and long (24 h) periods of time. Seedlings were grown for five days in conditions of photoperiod, oriented according to the gravity vector. Then, they were subjected to clinorotation (1 or 60 rpm) in darkness to avoid the possible effect of light on the auxin gradients. Auxin is a phytohormone driving the physiological changes resulting in gravitropism. In a control experiment, we positioned seedlings perpendicular to the gravity vector in order to observe statoliths displacement producing changes in auxin gradient and to record the timeframe of the process, by collecting samples at defined time intervals. The gravitropic reaction of plants starts with the displacement of statoliths in columella cells. We investigated the displacement of statoliths by staining starch in these organelles with Lugol solution. Next, we observed the auxin gradient using two reporter lines: DR5::GUS and DII-Venus. The changes in the position of statoliths were observed as soon as 1 h after experiment started. In the seedlings positioned perpendicular to the gravity vector, statoliths moved from the bottom of statocytes to the side of the cells, whereas in the seedlings exposed to clinorotation they appeared dispersed in the cells, which confirmed that plants were unable to sense the direction of gravity vector. Accumulation of auxin was observed on the side of the root where gravity vector was acting after 1h in case of DII-Venus and 2 h in case of DR5::GUS. We observed quantitative changes in auxin gradient and root length in the seedlings exposed to two different speeds of clinorotation. We compared the results with previous experiments using Random Positioning Machine (RPM) and in real microgravity. We conclude that the proposed mathematical model, as well as the physiological reaction of plants, confirms that the low-speed (1 rpm) is more suitable to perform microgravity simulation experiments., Funding for this study was provided by the Spanish National Plan for Research and Development (MINECO-ERDF co-funding) Grant ESP2015-64323-R to FJM. AV is recipient of grant of the Spanish National Program for Young Researchers Training (Refs. BES-2016- 077976). Clinostat for this study was provided by ZGIP, UNOOSA. ESA Education Office supported the attendance of AV to IAC 2018.
- Published
- 2018
4. RNA ‐seq analyses of Arabidopsis thaliana seedlings after exposure to blue‐light phototropic stimuli in microgravity
- Author
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Vandenbrink, Joshua P., primary, Herranz, Raul, additional, Poehlman, William L., additional, Alex Feltus, F., additional, Villacampa, Alicia, additional, Ciska, Malgorzata, additional, Javier Medina, F., additional, and Kiss, John Z., additional
- Published
- 2019
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5. Spaceflight-related suboptimal conditions can accentuate the altered gravity response of Drosophila transcriptome
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Herranz, R., Benguría, A., Laván, D.A., López-Vidriero, I., Gasset, G., Javier Medina, F., van Loon, J.J.W.A., Marco, R., Ministerio de Educación y Ciencia (España), Ministerio de Ciencia e Innovación (España), Netherlands Organization for Scientific Research, and Orale Celbiologie (OUD, ACTA)
- Abstract
Genome-wide transcriptional profiling shows that reducing gravity levels during Drosophila metamorphosis in the International Space Station (ISS) causes important alterations in gene expression: a large set of differentially expressed genes (DEGs) are observed compared to 1g controls. However, the preparation procedures for spaceflight and the nonideal environmental conditions on board the ISS subject the organisms to additional environmental stresses that demonstrably affect gene expression. Simulated microgravity experiments performed on the ground, under ideal conditions for the flies, using the random position machine (RPM), show much more subtle effects on gene expression. However, when the ground experiments are repeated under conditions designed to reproduce the additional environmental stresses imposed by spaceflight procedures, 79% of the DEGs detected in the ISS are reproduced by the RPM experiment. Gene ontology analysis of them shows they are genes that affect respiratory activity, developmental processes and stress-related changes. Here, we analyse the effects of microgravity on gene expression in relation to the environmental stresses imposed by spaceflight. Analysis using 'gene expression dynamics inspector' (GEDI) self-organizing maps reveals a subtle response of the transcriptome to microgravity. Remarkably, hypergravity simulation induces similar response of the transcriptome, but in the opposite direction, i.e. the genes promoted under microgravity are usually suppressed under hypergravity. These results suggest that the transcriptome is finely tuned to normal gravity and that microgravity, together with environmental constraints associated with space experiments, can have profound effects on gene expression. © 2010 Blackwell Publishing Ltd., This work was supported by grants from the Spanish Space Program in the ‘Plan Nacional de Investigación Científica y Desarrollo Tecnológico’ [ESP2001-4522-PE and ESP2006-13600-C02-01 to Marco. and ESP2006-13600-C02-02 to Medina.] and the Dutch NWO-ALW-SRON grant [MG-057 to van Loon]. R. Herranz during the Cervantes mission and D. Lavan during the post-flight analysis were supported by Spanish Ministerio de Educación y Ciencia within the FPI fellowship program.
- Published
- 2010
6. Drosophila GENE Experiment in the Spanish Soyuz Mission to the ISS: II. Effects of the Containment Constraints
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Herranz, Raúl, primary, Laván, David A., additional, Javier Medina, F., additional, van Loon, Jack J. W. A., additional, and Marco, Roberto, additional
- Published
- 2008
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7. Plant cell proliferation and growth are altered by microgravity conditions in spaceflight.
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Matía I, González-Camacho F, Herranz R, Kiss JZ, Gasset G, van Loon JJ, Marco R, and Javier Medina F
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- Arabidopsis growth & development, Space Flight, Cell Enlargement, Cell Proliferation, Hypogravity, Meristem growth & development, Seedlings growth & development
- Abstract
Seeds of Arabidopsis thaliana were sent to space and germinated in orbit. Seedlings grew for 4d and were then fixed in-flight with paraformaldehyde. The experiment was replicated on the ground in a Random Positioning Machine, an effective simulator of microgravity. In addition, samples from a different space experiment, processed in a similar way but fixed in glutaraldehyde, including a control flight experiment in a 1g centrifuge, were also used. In all cases, comparisons were performed with ground controls at 1g. Seedlings grown in microgravity were significantly longer than the ground 1g controls. The cortical root meristematic cells were analyzed to investigate the alterations in cell proliferation and cell growth. Proliferation rate was quantified by counting the number of cells per millimeter in the specific cell files, and was found to be higher in microgravity-grown samples than in the control 1g. Cell growth was appraised through the rate of ribosome biogenesis, assessed by morphological and morphometrical parameters of the nucleolus and by the levels of the nucleolar protein nucleolin. All these parameters showed a depletion of the rate of ribosome production in microgravity-grown samples versus samples grown at 1g. The results show that growth in microgravity induces alterations in essential cellular functions. Cell growth and proliferation, which are strictly associated functions under normal ground conditions, appeared divergent after gravity modification; proliferation was enhanced, whereas growth was depleted. We suggest that the cause of these changes could be an alteration in the cell cycle regulation, at the levels of checkpoints regulating cell cycle progression, leading to a shortened G2 period., (Copyright 2009 Elsevier GmbH. All rights reserved.)
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- 2010
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8. Identification and localization of a nucleolin homologue in onion nucleoli.
- Author
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Martin M, Garcia-Fernandez LF, Díaz de la Espina SM, Noaillac-Depeyre J, Gas N, and Javier Medina F
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- Allium ultrastructure, Bismuth, Blotting, Western, Microscopy, Immunoelectron, Silver Staining, Nucleolin, Allium chemistry, Cell Nucleolus chemistry, Nuclear Proteins analysis, Phosphoproteins analysis, RNA-Binding Proteins
- Abstract
A protein homologous to nucleolin, a major nucleolar protein with multifunctional features involved in pre-rRNA synthesis and early processing, has been identified and localized in situ in onion root meristematic cells by different techniques, which have included the use of an antibody raised against hamster nucleolin. The protein was identified on Western blots of nucleolar proteins as a 64-kDa band, by means of the anti-nucleolin antibody, bismuth staining, and the silver staining-nucleolar organizer (Ag-NOR) method. The experiments also suggested that nucleolin could be a target of these two cytochemical stainings. Although the 64-kDa band corresponds to a major nucleolar protein, it is a minor one among total nuclear proteins. The same techniques were used in situ at the ultrastructural level, and the immunogold detection of the nucleolin homologue was quantitatively evaluated. The protein accumulates in the transition area from nucleolar fibrillar centers to the dense fibrillar component, which is considered to be the structural result of ribosomal gene transcription. Out of this transition area, the dense fibrillar component may be divided into two regions, proximal and distal with respect to fibrillar centers, which show, respectively, the significant and unsignificant presence of nucleolin; we interpret this fact as the expression of the topological arrangement of pre-rRNA processing. Fibrillar centers themselves showed a weak but significant labeling with the anti-nucleolin antibody. However, bismuth staining was absent from the interior of fibrillar centers, indicating that the nucleolin in them is not phosphorylated. Ag-NOR staining uniformly covered fibrillar centers and the dense fibrillar component (at least in its proximal region), but it did not stain condensed chromatin inclusions in heterogeneous fibrillar centers, showing that the binding of nucleolin to chromatin is associated with its decondensation. This work provides additional evidence of the high phylogenetic conservation of molecular motifs which take part in ribosome biogenesis.
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- 1992
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9. Immunolocalization of DNA at nucleolar structural components in onion cells.
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Martin M, Diaz de la Espina SM, and Javier Medina F
- Subjects
- Antibodies, Monoclonal genetics, DNA, Ribosomal immunology, Interphase, Microscopy, Electron, RNA Precursors biosynthesis, Allium genetics, Cell Nucleolus analysis, DNA, Ribosomal analysis
- Abstract
Intranucleolar DNA, including ribosomal DNA (rDNA), was localized in situ in proliferating onion cells under the electron microscope using an anti-DNA monoclonal antibody and a postembedding indirect immunogold procedure. In the interphase nucleolus of this species, characterized by a very high amount of rRNA genes, we found DNA concentrated mostly in fibrillar centres (FCs) and in the region of the dense fibrillar component (DFC) immediately surrounding them. Clusters of gold particles were frequently seen covering both of these structural components of the nucleolus at the same time. Moreover, the same technique, applied to transcriptionally arrested quiescent onion cells, showed the nucleolar DFC devoid of DNA. Also, in mitotic cells at telophase, the prenucleolar material, which has the same morphological and cytochemical features as the DFC, does not contain DNA. These data suggest the existence of at least two subcomponents of the DFC in the onion cell nucleolus, one associated with pre-rRNA synthesis, and the other, with further processing of transcripts, already released from the rDNA template. We conclude that the first subcomponent forms part of the "transition between FC and DFC", which is the in situ structural counterpart of pre-rRNA synthesis. This transition is morphologicaly sizeable in onion cells, because of their high number of rRNA genes and the large size of the DFC mass; however, it would be largely detectable in situ in other cell systems, where the whole DFC comprises only a thin layer and the amount of rDNA is considerably reduced.
- Published
- 1989
- Full Text
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