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Data repository for "Disentangling the Evolution of Electrons and Holes in photoexcited ZnO nanoparticles", submitted to Structural Dynamics (#SDY23-AR-XAS2023-00063). Data are divided in 4 numbered folders, organized as follows: Folder "1 - ZnO_PL_scans": This folder contains the raw data of ultrafast photoluminescence measurement. ZnO_full_time.pxp file (Igor Pro by WaveMetrics) is the ultrafast photoluminescence(PL) data obtained upon pumping at 4.66eV at different fluence :0.8, 2.3, 4.7, 5.4 (unit: mJ*cm-2), which are plotted in Figure 1, Figure 2, Figure S3, Figure S4, and Figure S5. time_0312cuts.txt, zno1812corr_wn_233nm.txt, PL_cut_fit2exp.ipynb are the time delay, time trace cut at PL peak, and python code for exponential fitting, respectively, which is plotted in Figure S7. ZnO Raman_rise.pxp contains the Raman data of water in comparison of rising of ZnO PL data, which is plotted in Figure S6. Folder "2 - ZnO_XANES_transient": This folder contains the raw data of Zn K-edge fs-XANES transients data measured in SACLA (2ps), which are plotted in Figure 3 and Figure 4. In the SACLA_APS_comparison_XANES.txt file: the headers "allDiff_N", "allscaler1S3_N", "fluonorm_diff_norm", indicates the transient data measured in APS (100ps), ground-state XAS, and the transient fs-XANES data measured in SACLA(2ps), repectively. Folder "3 - ZnO_XANES_timescan":This folder contains the fs-XANES time scan along with the fitting python code, which is plotted in Figure 5 and Figure S8. Folder "4 - ZnO_MD_Simulation" - This folder contains the result of ab-initio molecular dynamics simulations, which is plotted in Figure 6.

The SOLARIS synchrotron located in Krakow, Poland, is a third-generation light source operating at medium electron energy. The first synchrotron light was observed in 2015, and the consequent development of infrastructure lead to the first users’ experiments at soft X-ray energies in 2018. Presently, SOLARIS expands its operation towards hard X-rays with continuous developments of the beamlines and concurrent infrastructure. In the following, we will summarize the SOLARIS synchrotron design, and describe the beamlines and research infrastructure together with the main performance parameters, upgrade, and development plans.

Photochemical reactions in solution are governed by a complex interplay between transient intramolecular electronic and nuclear structural changes and accompanying solvent rearrangements. State-of-the-art time-resolved X-ray solution scattering has emerged in the last decade as a powerful technique to observe solute and solvent motions in real time. However, disentangling solute and solvent dynamics and how they mutually influence each other remains challenging. Here, we simultaneously measure femtosecond X-ray emission and scattering to track both the intramolecular and solvation structural dynamics following photoexcitation of a solvated copper photosensitizer. Quantitative analysis assisted by molecular dynamics simulations reveals a two-step ligand flattening strongly coupled to the solvent reorganization, which conventional optical methods could not discern. First, a ballistic flattening triggers coherent motions of surrounding acetonitrile molecules. In turn, the approach of acetonitrile molecules to the copper atom mediates the decay of intramolecular coherent vibrations and induces a further ligand flattening. These direct structural insights reveal that photoinduced solute and solvent motions can be intimately intertwined, explaining how the key initial steps of light harvesting are affected by the solvent on the atomic time and length scale. Ultimately, this work takes a step forward in understanding the microscopic mechanisms of the bidirectional influence between transient solvent reorganization and photoinduced solute structural dynamics.

We report femtosecond Fe K-edge absorption (XAS) and nonresonant X-ray emission (XES) spectra of ferric cytochrome C (Cyt c) upon excitation of the haem (>300 nm) or mixed excitation of the haem and tryptophan (

Journal of analytical atomic spectrometry 38(1), 253 (2023). doi:10.1039/D2JA90063G, Correction for ‘High resolution off resonant spectroscopy as a probe of the oxidation state’ by Michal Nowakowski et al., J. Anal. At. Spectrom., 2022, 37, 2383–2391, https://doi.org/10.1039/D2JA00232A.The authors regret an error in the grant number of J. S. and R. F. as detailed in the Acknowledgements section. The correct grant number is 2020/37/B/ST3/00555.The Royal Society of Chemistry apologises for these errors and any consequent inconvenience to authors and readers., Published by ChemSoc, Cambridge

Resonant X-ray emission spectroscopy (RXES) has developed in the past decade as a powerful tool to probe the chemical state of a metal center and in situ study chemical reactions. We have used it to monitor spectral changes associated with the reduction of osmium(VI) nitrido complexes to the osmium(III) ammine state by the biologically relevant reducing agent, glutathione. RXES difference maps are consistent with the proposed DFT mechanism and the formation of two stable osmium(IV) intermediates, thereby supporting the overall pathway for the reduction of these high-valent anticancer metal complexes for which reduction by thiols within cells may be essential to the antiproliferative activity., SCOPUS: ar.j, info:eu-repo/semantics/published

The electronic structure of transition-metal oxides is a key component responsible for material's optical and chemical properties. Specifically for metal-oxide structures, the crystal-field interaction determines the shape, strength, and occupancy of electronic orbitals. Consequently, the crystal-field splitting and resulting unoccupied state populations can be foreseen as modeling factors of the photochemical activity. Herein, we study the formation of crystal-field effects during thermal oxidation of titanium in an ambient atmosphere and range of temperatures. The X-ray absorption spectroscopy is employed for quantitative analysis of average t2g-eg crystal-field splitting (Δoct) and relative t2g/eg bands occupancy. The obtained result shows that Δoct changes as a function of temperature from 1.97 eV for a passive oxide layer created on a Ti metal surface at room temperature to 2.41 eV at 600 °C when the material changes into the TiO2 rutile phase. On the basis of XAS data analysis, we show that the Δoct values determined from L2 and L3 absorption edges are equal, indicating that the 2p1/2 and 2p3/2 core holes screen the t2g and eg electronic states in a similar manner.

This work demonstrates how the combination of resonant and non-resonant X-ray emission spectroscopies supplemented with theoretical modelling allows for quantitative analysis of electronic states around Fermi, band gap energies and strength of crystal field splitting in 5d transition metal and metal-oxide materials., The composition of occupied and unoccupied electronic states in the vicinity of Fermi energies is vital for all materials and relates to their physical, chemical and mechanical properties. This work demonstrates how the combination of resonant and non-resonant X-ray emission spectroscopies supplemented with theoretical modelling allows for quantitative analysis of electronic states in 5d transition metal and metal-oxide materials. Application of X-rays provides element selectivity that, in combination with the penetrating properties of hard X-rays, allows determination of the composition of electronic states under working conditions, i.e. non-vacuum environment. Tungsten metal and tungsten oxide are evaluated to show the capability to simultaneously assess composition of around-band-gap electronic states as well as the character and magnitude of the crystal field splitting.

A periodic oxidative regeneration of a sulfur-poisoned methanation catalyst is an alternative to the expensive state-of-the-art process of syngas cleaning using wet scrubbers. Here we have employed operando X-ray emission spectroscopy (XES) to study sulfur speciation on Ru/SiO2 and Ru/Al2O3 during methanation in the presence of H2S and subsequent regeneration in dilute O2 at 360 °C. XES allowed us to obtain semi-quantitative sulfur speciation and to monitor changes in the absolute sulfur concentration. It was established that Al2O3, in contrast to SiO2, forms sulfite/sulfate species by reacting with SO2, which is released from the poisoned Ru surface upon oxidative treatment. The concentration of sulfite/sulfate species is reduced upon switching the feed to H2/CO while no simultaneous increase in sulfide concentration is observed. For both catalysts, the regenerative treatment removes adsorbed sulfur as SO2 only partially, which we propose is the main reason for the incomplete activity recovery of the poisoned catalyst after regeneration.

Herein, it has been demonstrated how resonant X-ray emission spectroscopy can be employed to study the charge transfer dynamics in real-time during the temperature-induced oxidation of metallic tungsten. Application of high energy resolution schemes allowed distinguishing charge transfer to separate orbitals resulting from crystal field splitting. Based on the time-resolved studies, it was possible to determine the corresponding charge transfer rates. From the experimental data, we determined that the electron transfer during the thermal oxidation of the metal dominates in the temperature range of 470-570 °C, reaching a maximum of 0.036 electrons per °C.

Journal of analytical atomic spectrometry 37(11), 2383 - 2391 (2022). doi:10.1039/D2JA00232A, Currently, chemistry and physics are strongly dependent on the concept of the oxidation state. While the formal oxidation state is easily evaluated, the real physical oxidation state value is often difficult to determine and significantly varies from the formal values. Determination of the ionization threshold in X-ray absorption spectroscopy (XANES) relies on the absorption edge position and sometimes poses limitations, mainly due to the edge resonances. Moreover, the lower energy states can be probed only within x-soft or XUV photons providing only surface state information of probed materials. Here, we employ high energy resolution off-resonant spectroscopy to determine both 1s and 3p binding energies of Fe-based materials and therefore correlate to their physical oxidation state. The results are compared to the ones obtained with classical X-ray absorption, X-ray emission, and photoelectron spectroscopies. The observed differences in binding energies are discussed in a frame of initial and final state interactions with the atom's electronic configurations. The presented methodology is discussed towards potential use to single-shot experiments and application at X-ray free-electron lasers. Alternatively, core level X-ray emission spectroscopy can be used, but the emission line positions are strongly affected by spin-orbit interaction. However, due to the energy transfer from the photon to the excited core electron, the same information as in XANES is probed in high energy resolution off-resonant spectroscopy (HEROS). Based on the Kramers–Heisenberg theory, we propose a new approach for ionization threshold determination which is free of the limitations encountered in XANES-based determination of the core state energy. Namely, the value of core state energy can be determined analytically using a few HEROS spectra recorded with significantly higher spectral resolution. This approach provides a basis for the universal physical oxidation state determination method., Published by ChemSoc, Cambridge

The main advantage of wavelength-dispersive spectrometers applied in X-ray study is their high energy resolution. The design and construction of spectrometer, usually dedicated to the specific experimental systems, for example synchrotron based setups, need information about the characteristics of the main elements of the spectrometer such as X-ray optics elements, crystals and detectors. Such information can be obtained using Monte-Carlo simulations. In this paper, the Monte-Carlo simulations of X-ray tracing in parallel-beam wavelength-dispersive spectrometer (PBWDS), equipped with polycapillary optics, are presented and discussed. The study concentrates on the description of the polycapillary model, simulations of the properties of X-ray polycapillary optics and, finally, on the simulations of X-ray track in the spectrometer designed and installed at the ID21 beamline at the European Synchrotron Radiation Facility (ESRF, Grenoble, France). The results of simulations were compared with experimental data obtained for different registered X-ray energies and spectrometer crystals, showing good agreement. The obtained results showed that the X-ray transmission in the tested polycapillary optics is at the level of 15%, while the divergence of the outgoing beam changes from 8 mrad to 3 mrad with an increase of photon energy from 2 keV to 10 keV. The spectrometer provides an energy resolution of 5 eV and 33 eV in the energy range of 1.4 keV - 6.5 keV. The developed simulation program can be successfully used for the construction of spectrometers dedicated to the different experimental conditions. (C) 2021 Optical Society of America under the terms of the OSA Open Access Publishing Agreement

A von Hamos geometry based wavelength dispersive spectrometer combined with an in situ reactor cell has been developed to measure non-resonant sulfur Kα emission for the in situ speciation of low concentrations of sulfur. The spectrometer operates at 15 cm focusing radius, is equipped with a curved Si(111) crystal and a position sensitive detector, and is capable of achieving an energy resolution of 0.56 eV at 2.3 keV. We present the details of the spectrometer and dedicated sample-cell design to study chemical reactions in situ. The spectrometer capabilities are exemplified by an in situ study of sulfur speciation during H2S poisoning of SiO2 supported Ru nanoparticles performing CO methanation.

X-ray emission spectroscopy (XES) and X-ray absorption spectroscopy (XAS) provide a unique opportunity to probe both the highest occupied and the lowest unoccupied states in matter with bulk sensitivity. In this work, a combination of valence-to-core XES and pre-edge XAS techniques are used to determine changes induced in the electronic structure of titanium dioxide doped with nitrogen atoms. Based on the experimental data it is shown that N-doping leads to incorporation of the p-states on the occupied electronic site. For the conduction band, a decrease in population of the lowest unoccupied d-localized orbitals with respect to the d-delocalized orbitals is observed. As confirmed by theoretical calculations, the N p-states in TiO2 structure are characterized by higher binding energy than the O p-states which gives a smaller value of the band-gap energy for the doped material.

It has been shown that for nonlinear atomic ionization, transfer of the degree of circular polarization from incident to fluorescence light is maximum at the Cooper minimum [J. Hofbrucker, A. V. Volotka, and S. Fritzsche, Phys. Rev. A 100, 011401(R) (2019)]. However, it is still a challenge to produce and detect circularly polarized light at xuv and x-ray photon energies. We here show that transfer of linear polarization is strongly enhanced at the Cooper minimum in two-photon ionization and can be readily detected using current free-electron laser facilities by measurements of the degree of linear polarization of the characteristic $L{\ensuremath{\alpha}}_{1}$ and $L{\ensuremath{\alpha}}_{2}$ lines. Two-photon ionization of a $2{p}_{3/2}$ electron of a tungsten atom is proposed to demonstrate the presented phenomena and realization of such an experiment is discussed in detail.

Two new operation modes, “pink beam” excitation, which has the energy bandwidth defined by X-ray mirrors and filters, and “broadband beam”, where the energy bandwidth is defined by the reflection from a multilayer monochromator, were implemented at the SuperXAS beamline of the Swiss Light Source (SLS). These setups allow measuring non-resonance X-ray emission spectra (XES) with 2–3 orders of magnitude higher incident flux than non-resonant XES measurements with a monochromatic incident beam. For the broadband beam mode, a Mo/Si multilayer structure was designed, with which the energy can be tuned in the 5–17 keV range. The multilayer demonstrates a relatively large energy bandwidth of 4 ± 0.2% through the whole energy range and a reflectivity of 23–60%, which increases with energy. We show that by using pink beam mode one can investigate the electronic structure of photocatalytic intermediates through time-resolved core-to-core XES experiments of diluted samples with a concentration of the element of interest of ~1 mM. Broadband beam mode is optimal for valence-to-core XES experiments and allow to avoid the excitation of additional KLβ satellites that can complicate the interpretation of spectra.

The structure-function relationship is at the heart of biology, and major protein deformations are correlated to specific functions. For ferrous heme proteins, doming is associated with the respiratory function in hemoglobin and myoglobins. Cytochrome c (Cyt c) has evolved to become an important electron-transfer protein in humans. In its ferrous form, it undergoes ligand release and doming upon photoexcitation, but its ferric form does not release the distal ligand, while the return to the ground state has been attributed to thermal relaxation. Here, by combining femtosecond Fe K-alpha and K-beta X-ray emission spectroscopy (XES) with Fe K-edge X-ray absorption near-edge structure (XANES), we demonstrate that the photocycle of ferric Cyt c is entirely due to a cascade among excited spin states of the iron ion, causing the ferric heme to undergo doming, which we identify. We also argue that this pattern is common to a wide diversity of ferric heme proteins, raising the question of the biological relevance of doming in such proteins.

A fast X-ray focusing polycapillary alignment method was implemented and tested using a compact short-pulse laser-driven broadband X-ray source., A new modification of a table-top laser-driven water-jet plasma X-ray source has been successfully implemented and commissioned at the Extreme Light Infrastructure (ELI) Beamlines user facility. In order to preserve the broadband nature of the source for spectroscopic experiments, a polycapillary lens was initially chosen as the focusing element. Generally, polycapillary X-ray optics have a narrow photon acceptance angle and small field of view, making alignment complicated and time-consuming. This contribution demonstrates a straightforward, reliable and reproducible procedure for aligning polycapillary focusing optics with broadband X-rays. The method involves a pre-alignment step where two X-ray slits are mounted orthogonally on opposite sides of a 3D-printed cylindrical polycapillary holder. This helps to precisely determine the optical axis of the X-ray beam. Subsequent mounting of the polycapillary in the pre-aligned holder with the slits removed allowed for immediate transmission of the X-ray photons through the optics and has provided a good starting point for fine alignment.

The photoinduced dynamics of ferric Cytochrome c was investigated by ultrafast non-resonant X-ray emission (XES) and X-Ray Absorption (XAS) spectroscopies, and a cascade through high spin states accompanied by heme doming are observed for the first time.

Femtosecond electronic and nuclear dynamics in [Cu(dmp)2]+ complex upon 550 nm photoexcitation are studied with X-ray emission spectroscopy and X-ray solution scattering, revealing pseudo Jahn-Teller distortion (~410 fs) coupled with coherent vibrational motion.

OLED technology beyond small or expensive devices requires light-emitters, luminophores, based on earth-abundant elements. Understanding and experimental verification of charge transfer in luminophores are needed for this development. An organometallic multicore Cu complex comprising Cu–C and Cu–P bonds represents an underexplored type of luminophore. To investigate the charge transfer and structural rearrangements in this material, we apply complementary pump-probe X-ray techniques: absorption, emission, and scattering including pump-probe measurements at the X-ray free-electron laser SwissFEL. We find that the excitation leads to charge movement from C- and P- coordinated Cu sites and from the phosphorus atoms to phenyl rings; the Cu core slightly rearranges with 0.05 Å increase of the shortest Cu–Cu distance. The use of a Cu cluster bonded to the ligands through C and P atoms is an efficient way to keep structural rigidity of luminophores. Obtained data can be used to verify computational methods for the development of luminophores., Nature Communications, 11 (1), ISSN:2041-1723

Herein we report on the hydrolysis mechanism of [Pt{N(p-HC 6 F 4 )CH 2 } 2 (NC 5 H 5 ) 2 (OH) 2 ], a platinum(IV) complex that exhibits anti-cancer properties. Atomic telemetry, an in situ technique based on electron structure sensitive X-ray spectroscopy, revealed that hydrolysis preceded any reduction of the metal center. The obtained results are complemented with 19 F NMR measurements and theoretical calculations and support the observation that this Pt IV complex does not reduce spontaneously to Pt II in HEPES buffer solution at pH 7.4 and after 24 h incubation. These results are of importance for the design of novel Pt-based coordination complexes as well as understanding their behavior under physiological conditions.

We report on novel reference-free methods to determine the instrumental resolution of transmission-type bent crystal spectrometers. The novel methods are based on the measurements of a selected X-ray line in several orders of diffraction. It is shown that the angular broadening of the spectrometer and the natural linewidth of the selected transition can be obtained directly from the novel methods. No reference X-ray line or γ-ray line is needed. The precision of the results is about 10 times better than the one obtained with the standard method consisting of measuring a reference X-ray line and keeping fixed in the fit the natural width of this line at the value taken from available databases. The novel methods are illustrated for a DuMond-type bent crystal spectrometer with the Kα1 X-ray line of Gd measured in the first five orders of diffraction.

Herein, it is reported an on-the-fly accretion/reaction protocol to evaluate the structure-performance relationship in the chemoselective flow citral hydrogenation over Ni-based catalysts. Based on ...

Herein, we report a systematic study on the electronic structure of surface and bulk TiO2 doped with C, N or S. The results were attained with a semi-empirical method consisting of a combination between resonant X-ray emission spectroscopy (RXES) measurements and localized density of states (LDOS) simulations. Experimental TiO2 RXES data was used to fit FEFF code empirical parameters, and subsequently frozen for the theoretical analysis of LDOS of TiO2 doped materials. The results show significant electronic structure differences between bulk and surface doping, as well as in the nearest Ti atom electronic structure if it is located at the surface or sub-surface, with potential consequences to the photo-catalytic process. The methodology can be adapted to study other dopants, morphologies, structures and surface terminations and as well as other inorganic semiconductors.

Zinc oxide (ZnO) is one of the most versatile semiconductor materials with multifarious potential applications. Easily accessible alkylzinc alkoxides have been widely exploited as single-source precursors of ZnO-based nanomaterials but their multi-step decomposition pathways have not been understood in detail. Herein, the formation mechanism of ZnO nanocrystals via solid-state thermal decomposition of a model pre-organised alkylzinc alkoxide precursor, i.e. [tBuZn(μ3-OtBu)]4, is elucidated using in situ valence-to-core X-ray emission (v2c-XES) and high energy resolution off-resonant spectroscopy (HEROS) in conjunction with theoretical calculations. Combination of in situ spectroscopic measurements and theoretical simulations indicates that the precursor structural evolution is initiated by the homolytic cleavage of the R–Zn bond, which leads to the formation of a transient radical ([˙Zn(μ3-OR)][RZn(μ3-OR)]3) species, which is responsible for the initial decomposition process. The ensuing multistep transformations involve the formation of intermediate radical zinc oxo-alkoxide clusters with gapless electronic states. Hitherto, the formation of clusters of this type has not been considered either as intermediate structures en route to a semiconductor ZnO phase or as potential species accounting for various defect states of ZnO NCs, particularly the singly charged oxygen vacancy, Vo+.

In the present work high energy resolution off-resonant X-ray spectroscopy (HEROS) was employed at a synchrotron to study a silica supported Ta(V) bisalkyl catalyst activated in hydrogen. The Ta L α 1 HEROS spectra were measured during oxidation of the starting complex and the relative species’ concentration was successfully retrieved as a function of time using the fingerprint HEROS spectra measured for the unoxidized and the oxidized catalyst. Based on the experimental data and theory-based calculations, it was shown that oxidation of the active Ta catalyst leads to the formation of mono- and di-meric species on the SiO2 surface. The obtained results were compared to those of the previously reported time-resolved HEROS study on an inactive silica supported Ta(V) bisalkyl catalyst’s concentration evolution during its oxidation Blachucki et al. (2015). The study allowed observation of an immediate transition of the active Ta catalyst from its unoxidized form to the oxidized one. This finding is dissimilar to the result of the study on the inactive Ta catalyst, where the oxidation led through an intermediate step.

Neurodegenerative diseases are one of the malfunctions of human nervous system, being a class of complex and prominent pathologies. The human prion Protease Resistant Protein (PrP) is protein regulating copper metabolism in mammalian cells through binding of Cu(II) ions to specific fragments. Nowadays misfolding of this protein is associated with development of prion diseases. Therefore, it is crucial to obtain structural information about coordination of Cu(II) by PrP protein. Herein, we report X-ray absorption spectroscopy (XAS) measurements, carried out on SuperXAS beamline (SLS, PSI Villigen) on PrPC-Cu(II) complexes. Obtained results were compared with theoretical predictions done by FEFF 9.6 software. Complementary to XAS data, Atomic Force Microscopy (AFM) measurements were conducted to obtain low resolution structural information about prepared sample that allow to develop protocol of fixing PrPC molecules on solid substrate used for further experiments. It has been established that folded C-terminal domain of PrPC protein has around 5 nm in diameter. Presented results showed that both XAS and AFM methods are useful tools in detailed examination of complexes of human PrPC either with Cu(II) or with other divalent metal ions.

Featured Application In the present work, RXES planes are reconstructed with high energy resolution from the experimental spectra of the X-ray radiation emitted from a sample and of incident X-ray pulses delivered by an XFEL operated in the raw SASE mode. The dependence of the reconstructed RXES planes' quality on the number of recorded XFEL shots is studied. Aqueous iron (III) oxide nanoparticles were irradiated with pure self-amplified spontaneous emission (SASE) X-ray free-electron laser (XFEL) pulses tuned to the energy around the Fe K-edge ionization threshold. For each XFEL shot, the incident X-ray pulse spectrum and Fe K beta emission spectrum were measured synchronously with dedicated spectrometers and processed through a reconstruction algorithm allowing for the determination of Fe K beta resonant X-ray emission spectroscopy (RXES) plane with high energy resolution. The influence of the number of X-ray shots employed in the experiment on the reconstructed data quality was evaluated, enabling the determination of thresholds for good data acquisition and experimental times essential for practical usage of scarce XFEL beam times.