347 results on '"Jackson AP"'
Search Results
2. Multiple targets for flecainide action: implications for cardiac arrhythmogenesis
- Author
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Salvage, SC, Chandrasekharan, KH, Jeevaratnam, K, Dulhunty, AF, Thompson, AJ, Jackson, AP, Huang, CL-H, Salvage, Samantha [0000-0002-5793-2349], Thompson, Andrew [0000-0002-7046-6792], Jackson, Antony [0000-0002-2895-7387], Huang, Christopher [0000-0001-9553-6112], and Apollo - University of Cambridge Repository
- Subjects
Flecainide ,Potassium Channels ,Potassium Channel Blockers ,Animals ,Humans ,Arrhythmias, Cardiac ,Calcium ,Ryanodine Receptor Calcium Release Channel ,Anti-Arrhythmia Agents - Abstract
Flecainide suppresses cardiac tachyarrhythmias including paroxysmal atrial fibrillation, supraventricular tachycardia and arrhythmic long QT syndromes (LQTS), as well as the Ca(2+) -mediated, catecholaminergic polymorphic ventricular tachycardia (CPVT). However, flecainide can also exert pro-arrhythmic effects most notably following myocardial infarction and when used to diagnose Brugada syndrome (BrS). These divergent actions result from its physiological and pharmacological actions at multiple, interacting levels of cellular organization. These were studied in murine genetic models with modified Nav channel or intracellular ryanodine receptor (RyR2)-Ca(2+) channel function. Flecainide accesses its transmembrane Nav 1.5 channel binding site during activated, open, states producing a use-dependent antagonism. Closing either activation or inactivation gates traps flecainide within the pore. An early peak INa related to activation of Nav channels followed by rapid de-activation, drives action potential (AP) upstrokes and their propagation. This is diminished in pro-arrhythmic conditions reflecting loss of function of Nav 1.5 channels, such as BrS, accordingly exacerbated by flecainide challenge. Contrastingly, pro-arrhythmic effects attributed to prolonged AP recovery by abnormal late INaL following gain-of-function modifications of Nav 1.5 channels in LQTS3 are reduced by flecainide. Anti-arrhythmic effects of flecainide that reduce triggering in CPVT models mediated by sarcoplasmic reticular Ca(2+) release could arise from its primary actions on Nav channels indirectly decreasing [Ca(2+) ]i through a reduced [Na(+) ]i and/or direct open-state RyR2-Ca(2+) channel antagonism. The consequent [Ca(2+) ]i alterations could also modify AP propagation velocity and therefore arrhythmic substrate through its actions on Nav 1.5 channel function. This is consistent with the paradoxical differences between flecainide actions upon Na(+) currents, AP conduction and arrhythmogenesis under circumstances of normal and increased RyR2 function.
- Published
- 2017
3. How to design a planetary system for different scattering outcomes: giant impact sweet spot, maximizing exocomets, scattered discs
- Author
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Wyatt, MC, Bonsor, A, Jackson, AP, Marino, S, Shannon, A, Wyatt, Mark [0000-0001-9064-5598], Bonsor-Matthews, Amy [0000-0002-8070-1901], Marino, Sebastian [0000-0002-5352-2924], and Apollo - University of Cambridge Repository
- Subjects
stars: formation ,Physics::Space Physics ,Astrophysics::Solar and Stellar Astrophysics ,Astrophysics::Earth and Planetary Astrophysics ,circumstellar matter ,planetary systems ,Astrophysics::Galaxy Astrophysics - Abstract
This paper considers the dynamics of the scattering of planetesimals or planetary embryos by a planet on a circumstellar orbit. We classify six regions in the planet's mass versus semimajor axis parameter space according to the dominant outcome for scattered objects: ejected, accreted, remaining, escaping, Oort Cloud, and depleted Oort Cloud. We use these outcomes to consider which planetary system architectures maximize the observability of specific signatures, given that signatures should be detected first around systems with optimal architectures (if such systems exist in nature). Giant impact debris is most readily detectable for 0.1–10 M⊕ planets at 1–5 au, depending on the detection method and spectral type. While A stars have putative giant impact debris at 4–6 au consistent with this sweet spot, that of FGK stars is typically ≪1 au contrary to expectations; an absence of 1–3 au giant impact debris could indicate a low frequency of terrestrial planets there. Three principles maximize the cometary influx from exo-Kuiper belts: a chain of closely separated planets interior to the belt, none of which is a Jupiter-like ejector; planet masses not increasing strongly with distance (for a net inward torque on comets); and ongoing replenishment of comets, possibly by embedded low-mass planets. A high Oort Cloud comet influx requires no ejectors and architectures that maximize the Oort Cloud population. Cold debris discs are usually considered classical Kuiper belt analogues. Here we consider the possibility of detecting scattered disc analogues, which could be betrayed by a broad radial profile and lack of small grains, as well as spherical 100–1000 au mini-Oort Clouds. Some implications for escaping planets around young stars, detached planets akin to Sedna, and the formation of super-Earths are also discussed., MCW, AB, and AS acknowledge the support of the European Union through European Research Council grant number 279973. APJ acknowledges support from NASA grant NNX16AI31G. AS is partially supported by funding from the Center for Exoplanets and Habitable Worlds. The Center for Exoplanets and Habitable Worlds is supported by the Pennsylvania State University, the Eberly College of Science, and the Pennsylvania Space Grant Consortium. This research has made use of the NASA Exoplanet Archive, which is operated by the California Institute of Technology, under contract with the National Aeronautics and Space Administration under the Exoplanet Exploration Program.
- Published
- 2016
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4. Global Gene Expression Profiling through the Complete Life Cycle of Trypanosoma vivax
- Author
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Jackson, AP, Goyard, S, Xia, D, Foth, BJ, Sanders, M, Wastling, JM, Minoprio, P, and Berriman, M
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Life Cycle Stages ,lcsh:Arctic medicine. Tropical medicine ,Species Specificity ,lcsh:RC955-962 ,lcsh:Public aspects of medicine ,parasitic diseases ,Protozoan Proteins ,Gene Expression Regulation, Developmental ,lcsh:RA1-1270 ,Trypanosoma vivax ,Transcriptome ,QR ,Research Article - Abstract
The parasitic flagellate Trypanosoma vivax is a cause of animal trypanosomiasis across Africa and South America. The parasite has a digenetic life cycle, passing between mammalian hosts and insect vectors, and a series of developmental forms adapted to each life cycle stage. Each point in the life cycle presents radically different challenges to parasite metabolism and physiology and distinct host interactions requiring remodeling of the parasite cell surface. Transcriptomic and proteomic studies of the related parasites T. brucei and T. congolense have shown how gene expression is regulated during their development. New methods for in vitro culture of the T. vivax insect stages have allowed us to describe global gene expression throughout the complete T. vivax life cycle for the first time. We combined transcriptomic and proteomic analysis of each life stage using RNA-seq and mass spectrometry respectively, to identify genes with patterns of preferential transcription or expression. While T. vivax conforms to a pattern of highly conserved gene expression found in other African trypanosomes, (e.g. developmental regulation of energy metabolism, restricted expression of a dominant variant antigen, and expression of ‘Fam50’ proteins in the insect mouthparts), we identified significant differences in gene expression affecting metabolism in the fly and a suite of T. vivax-specific genes with predicted cell-surface expression that are preferentially expressed in the mammal (‘Fam29, 30, 42’) or the vector (‘Fam34, 35, 43’). T. vivax differs significantly from other African trypanosomes in the developmentally-regulated proteins likely to be expressed on its cell surface and thus, in the structure of the host-parasite interface. These unique features may yet explain the species differences in life cycle and could, in the form of bloodstream-stage proteins that do not undergo antigenic variation, provide targets for therapy., Author Summary Trypanosoma vivax is a single-celled parasite that infects cattle and non-domesticated animals through the bite of the tsetse fly. The parasite causes animal trypanosomiasis, a chronic condition resulting in severe anemia, muscle wastage and ultimately death if untreated. This disease is endemic across sub-Saharan Africa but has also spread to South America and causes considerable losses in animal productivity, impeding economic development in the world’s poorest nations. To develop new ways of preventing and treating animal trypanosomiasis, we need an accurate understanding of how the parasite causes disease. In this study, we present an analysis of gene expression throughout the T. vivax life cycle that compares the abundance of gene transcripts (mRNA) and proteins in the mammalian and insect hosts. We have identified genes that are preferentially expressed in each life stage, including many that are unique to T. vivax and probably expressed on its cell surface. Our findings provide a comprehensive understanding of how gene expression is regulated in T. vivax and further refine a pool of T. vivax-specific genes that could be exploited to prevent and treat animal trypanosomiasis.
- Published
- 2015
5. The Cockayne Syndrome Natural History (CoSyNH) study: clinical findings in 102 individuals and recommendations for care
- Author
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Wilson, BT, Stark, Z, Sutton, RE, Danda, S, Ekbote, AV, Elsayed, SM, Gibson, L, Goodship, JA, Jackson, AP, Keng, WT, King, MD, McCann, E, Motojima, T, Murray, JE, Omata, T, Pilz, D, Pope, K, Sugita, K, White, SM, Wilson, IJ, Wilson, BT, Stark, Z, Sutton, RE, Danda, S, Ekbote, AV, Elsayed, SM, Gibson, L, Goodship, JA, Jackson, AP, Keng, WT, King, MD, McCann, E, Motojima, T, Murray, JE, Omata, T, Pilz, D, Pope, K, Sugita, K, White, SM, and Wilson, IJ
- Abstract
PURPOSE: Cockayne syndrome (CS) is a rare, autosomal-recessive disorder characterized by microcephaly, impaired postnatal growth, and premature pathological aging. It has historically been considered a DNA repair disorder; fibroblasts from classic patients often exhibit impaired transcription-coupled nucleotide excision repair. Previous studies have largely been restricted to case reports and small series, and no guidelines for care have been established. METHODS: One hundred two study participants were identified through a network of collaborating clinicians and the Amy and Friends CS support groups. Families with a diagnosis of CS could also self-recruit. Comprehensive clinical information for analysis was obtained directly from families and their clinicians. RESULTS AND CONCLUSION: We present the most complete evaluation of Cockayne syndrome to date, including detailed information on the prevalence and onset of clinical features, achievement of neurodevelopmental milestones, and patient management. We confirm that the most valuable prognostic factor in CS is the presence of early cataracts. Using this evidence, we have created simple guidelines for the care of individuals with CS. We aim to assist clinicians in the recognition, diagnosis, and management of this condition and to enable families to understand what problems they may encounter as CS progresses.Genet Med 18 5, 483-493.
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- 2016
6. Meier-Gorlin syndrome
- Author
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de Munnik, SA, Hoefsloot, EH, Roukema, J, Schoots, J, Knoers, NVAM, Brunner, HG, Jackson, AP, Bongers, EMHF, de Munnik, SA, Hoefsloot, EH, Roukema, J, Schoots, J, Knoers, NVAM, Brunner, HG, Jackson, AP, and Bongers, EMHF
- Abstract
Meier-Gorlin syndrome (MGS) is a rare autosomal recessive primordial dwarfism disorder, characterized by microtia, patellar applasia/hypoplasia, and a proportionate short stature. Associated clinical features encompass feeding problems, congenital pulmonary emphysema, mammary hypoplasia in females and urogenital anomalies, such as cryptorchidism and hypoplastic labia minora and majora. Typical facial characteristics during childhood comprise a small mouth with full lips and micro-retrognathia. During ageing, a narrow, convex nose becomes more prominent. The diagnosis MGS should be considered in patients with at least two of the three features of the clinical triad of microtia, patellar anomalies, and pre- and postnatal growth retardation. In patients with short stature and/or microtia, the patellae should be assessed with care by ultrasonography before age 6 or radiography thereafter. Mutations in one of five genes (ORC1, ORC4, ORC6, CDT1, and CDC6) of the pre-replication complex, involved in DNA-replication, are detected in approximately 67-78 % of patients with MGS. Patients with ORC1 and ORC4 mutations appear to have the most severe short stature and microcephaly. Management should be directed towards in-depth investigation, treatment and prevention of associated problems, such as growth retardation, feeding problems, hearing loss, luxating patellae, knee pain, gonarthrosis, and possible pulmonary complications due to congenital pulmonary emphysema with or without broncho- or laryngomalacia. Growth hormone treatment is ineffective in most patients with MGS, but may be effective in patients in whom growth continues to decrease after the first year of life (usually growth velocity normalizes after the first year) and with low levels of IGF1. At present, few data is available about reproduction of females with MGS, but the risk of premature labor might be increased. Here, we propose experience-based guidelines for the regular care and treatment of MGS patients.
- Published
- 2015
7. The Erlanger Protocol: Serial 12-Lead ECG Monitoring, Two-Hour Delta Serum Marker Measurements, and Selective Dual Nuclear Scanning to Identify and Exclude Acute Coronary Syndromes--A One-Year Experience
- Author
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Fesmire, FM, Hughes, AD, Stout, PK, Wojcik, JF, Wharton, DR, Jackson, AP, Fesmire, CE, Gilbert, MA, Copeland, ME, Meyers, BL, and Creel, JH
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Emergency medicine -- Research ,Health - Published
- 2001
8. Defective removal of ribonucleotides from DNA promotes systemic lupus erythematosus
- Author
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Günther, C, primary, Kind, B, additional, Reijns, MAM, additional, Berndt, N, additional, Martinez-Bueno, M, additional, Wolf, C, additional, Tüngler, V, additional, Chara, O, additional, Lee, YA, additional, Hübner, N, additional, Bicknell, L, additional, Blum, S, additional, Krug, C, additional, Schmidt, F, additional, Kretschmer, S, additional, Koss, S, additional, Astell, KR, additional, Ramantani, G, additional, Bauerfeind, A, additional, Morris, DL, additional, Graham, DS Cunninghame, additional, Bubeck, D, additional, Leitch, A, additional, Ralston, SH, additional, Blackburn, EA, additional, Gahr, M, additional, Witte, T, additional, Vyse, TJ, additional, Melchers, I, additional, Mangold, E, additional, Nöthen, MM, additional, Aringer, M, additional, Kuhn, A, additional, Lüthke, K, additional, Unger, L, additional, Bley, A, additional, Lorenzi, A, additional, Isaacs, JD, additional, Alexopoulou, D, additional, Conrad, K, additional, Dahl, A, additional, Roers, A, additional, Alarcon-Riquelme, ME, additional, Jackson, AP, additional, and Lee-Kirsch, MA, additional
- Published
- 2015
- Full Text
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9. PTH-082 Do Serum Markers Of Cell Injury And Death Have Potential To Become Mechanistic Markers In Non-alcoholic Fatty Liver Disease (nafld)?: Abstract PTH-082 Table 1
- Author
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Grove, JI, primary, Antoine, DJ, additional, Kaye, P, additional, Miller, MH, additional, Dillon, JF, additional, Allison, ME, additional, James, MW, additional, Wilkes, EA, additional, Jackson, AP, additional, Guha, IN, additional, Williams, DP, additional, and Aithal, GP, additional
- Published
- 2014
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10. Mental retardation, keratoconus, febrile seizures and sinoatrial block: a previously undescribed autosomal recessive disorder
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Kirby, D, primary, Jackson, AP, additional, Karbani, G, additional, and Crow, YJ, additional
- Published
- 2005
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11. A new locus for autosomal recessive non-syndromal sensorineural hearing impairment (DFNB27) on chromosome 2q23–q31
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Pulleyn, LJ, primary, Jackson, AP, additional, Roberts, E, additional, Carridice, A, additional, Muxworthy, C, additional, Houseman, M, additional, Al-Gazali, LI, additional, Lench, NJ, additional, Markham, AF, additional, and Mueller, RF, additional
- Published
- 2000
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12. A gene for ataxic cerebral palsy maps to chromosome 9p12–q12
- Author
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McHale, DP, primary, Jackson, AP, additional, Campbell, DA, additional, Levene, MI, additional, Corry, P, additional, Woods, CG, additional, Lench, NJ, additional, Mueller, RF, additional, and Markham, AF, additional
- Published
- 2000
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13. The Mapping of 3 Genetic Loci Involved in the Aetiology of Cerebral Palsy
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McHale, DP, primary, Campball, DA, additional, Jackson, AP, additional, Markham, AF, additional, Mueller, RF, additional, and Lench, NJ, additional
- Published
- 1999
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14. An assessment of the risks associated with PCDDs and PCDFs following the application of sewage sludge to agricultural land in the UK
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Jackson, AP, primary and Eduljee, GH, additional
- Published
- 1994
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15. Parenting efficacy and the early school adjustment of poor and near-poor black children.
- Author
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Jackson AP, Choi J, and Bentler PM
- Abstract
This short-term longitudinal study investigates whether maternal educational attainment, maternal employment status, and family income affect African American children's behavioral and cognitive functioning over time through their impacts on mothers' psychological functioning and parenting efficacy in a sample of 100 poor and near-poor single Black mothers and their 3- and 4-year-old focal children. Results indicate that education, working status, and earnings display statistically significant, negative, indirect relations with behavior problems and, with the exception of earnings, statistically significant, positive, indirect relationships with teacher-rated adaptive language skills over time. Findings suggest further that parenting efficacy may mediate the link between poor and near-poor single Black mothers' depressive symptoms and their preschoolers' subsequent school adjustment. Implications of these findings for policy and program interventions are discussed. [ABSTRACT FROM AUTHOR]
- Published
- 2009
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16. Moving towards work: the effects of employment experiences on welfare-dependent women and their children.
- Author
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Gyamfi P, Brooks-Gunn J, and Jackson AP
- Abstract
The present study sought to investigate the effects of employment on low-income single black mothers and their preschool children. The sample included 90 mothers from New York City communities who were welfare recipients in 1996, and followed two years later. At follow-up, 53 of the 90 mothers were employed. The findings indicated that lower levels of depressive affect or financial strain were not predictive of entry into the work force. However, once employed, mothers reported less depressive symptoms than those not working. Attaining more education predicted better outcomes for mothers and their children, and provided more of an opportunity to be successful in the job market. For example, having more education was associated with gaining employment, exiting welfare, having stable employment, earning higher wages, and better reading abilities in children. Maternal employment was beneficial to children, as mothers who entered the work force had children who performed better in math achievement at follow-up, after controlling for maternal socioeconomic characteristics and school readiness at baseline. Implications of the findings will be discussed. [ABSTRACT FROM AUTHOR]
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- 2005
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17. Single mothers' self-efficacy, parenting in the home environment, and children's development in a two-wave study [corrected] [published erratum appears in SOC WORK RES 2005 Jun;29(2):86].
- Author
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Jackson AP and Scheines R
- Abstract
Using data from a sample of 178 single black mothers and their young children who were ages three to five at time 1 and ages five to eight at time 2, this study examined the links between and among low-wage employment, mothers' self-efficacy beliefs, depressive symptoms, and a constellation of parenting behaviors in the preschool years to children's cognitive and behavioral functioning in early elementary school years. In general, the results supported a model in which the influence of mothers' employment on maternal parenting and child outcomes was largely indirect and mediated by perceived self-efficacy. Employment was related directly to higher self-efficacy, which in turn was associated with decreased depressive symptoms. Depressive symptoms were associated with the quality of the mother-nonresident father relationship and the latter with the frequency of nonresident fathers' contacts with their children. More contact between nonresident fathers and their children predicted more adequate maternal parenting, which in turn was associated directly with the children's subsequent behavioral and cognitive functioning in early elementary school. The results are discussed in the context of social cognitive theory and the Personal Responsibility and Work Opportunity Reconciliation Act of 1996. [ABSTRACT FROM AUTHOR]
- Published
- 2005
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18. Associations between employment and financial and parental stress in low-income single black mothers.
- Author
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Gyamfi P, Brooks-Gunn J, and Jackson AP
- Abstract
Using a sample of 188 low-income single black mothers (93 employed and 95 nonemployed), this study investigated financial strain, maternal depressive affect, and parenting stress among former welfare recipients who are now working, and current welfare recipients who are not employed. The findings suggested that being employed did not reduce financial strain, as the two groups reported similar levels of strain. However, regression analyses indicated that not being employed was associated with reporting higher levels of stress. Parenting stress was also associated with attaining less education, having boys, reporting more financial strain and depressive affect. Correlates of maternal depressive affect were mother's education and financial strain. Interaction effects were found for employment by financial strain, indicating that higher levels of depressive affect were related to more financial strain among nonemployed mothers. The findings suggest that although employment is associated with better mental health for poor mothers, entry into the workforce is associated with stronger links between financial strain, parenting stress and depressive affect for mothers leaving welfare. [ABSTRACT FROM AUTHOR]
- Published
- 2001
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19. Multiple targets for flecainide action: implications for cardiac arrhythmogenesis
- Author
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Salvage, SC, Chandrasekharan, KH, Jeevaratnam, K, Dulhunty, AF, Thompson, AJ, Jackson, AP, and Huang, CL-H
- Subjects
Flecainide ,Potassium Channels ,Potassium Channel Blockers ,Animals ,Humans ,Arrhythmias, Cardiac ,Calcium ,Ryanodine Receptor Calcium Release Channel ,Anti-Arrhythmia Agents ,3. Good health - Abstract
Flecainide suppresses cardiac tachyarrhythmias including paroxysmal atrial fibrillation, supraventricular tachycardia and arrhythmic long QT syndromes (LQTS), as well as the Ca(2+) -mediated, catecholaminergic polymorphic ventricular tachycardia (CPVT). However, flecainide can also exert pro-arrhythmic effects most notably following myocardial infarction and when used to diagnose Brugada syndrome (BrS). These divergent actions result from its physiological and pharmacological actions at multiple, interacting levels of cellular organization. These were studied in murine genetic models with modified Nav channel or intracellular ryanodine receptor (RyR2)-Ca(2+) channel function. Flecainide accesses its transmembrane Nav 1.5 channel binding site during activated, open, states producing a use-dependent antagonism. Closing either activation or inactivation gates traps flecainide within the pore. An early peak INa related to activation of Nav channels followed by rapid de-activation, drives action potential (AP) upstrokes and their propagation. This is diminished in pro-arrhythmic conditions reflecting loss of function of Nav 1.5 channels, such as BrS, accordingly exacerbated by flecainide challenge. Contrastingly, pro-arrhythmic effects attributed to prolonged AP recovery by abnormal late INaL following gain-of-function modifications of Nav 1.5 channels in LQTS3 are reduced by flecainide. Anti-arrhythmic effects of flecainide that reduce triggering in CPVT models mediated by sarcoplasmic reticular Ca(2+) release could arise from its primary actions on Nav channels indirectly decreasing [Ca(2+) ]i through a reduced [Na(+) ]i and/or direct open-state RyR2-Ca(2+) channel antagonism. The consequent [Ca(2+) ]i alterations could also modify AP propagation velocity and therefore arrhythmic substrate through its actions on Nav 1.5 channel function. This is consistent with the paradoxical differences between flecainide actions upon Na(+) currents, AP conduction and arrhythmogenesis under circumstances of normal and increased RyR2 function.
20. Avocado: Is it possible to produce two seedlings with one seed?
- Author
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Jackson Aparecido Chaves Souza, Guilherme Carvalho Prates, Joseane Turquete Ferreira, Guilherme Dumbá Monteiro de Castro, and Luiz Carlos Chamhum Salomão
- Subjects
persea americana mill. ,propagation ,rootstocks ,multiple stems. ,Agriculture (General) ,S1-972 ,Biotechnology ,TP248.13-248.65 - Abstract
ABSTRACT It was evaluated the possibility to produce two seedlings per avocado seed, through the separation of cotyledons. Two seed lots from two different ungrafted trees were evaluated. From the first tree were obtained 60 seeds, and 50 from the second. Half the seeds of each lot had their cotyledons separated and then whole seeds and half-seeds were sown in river sand. At 90 days after sowing, percentage of germinated seeds, shoot height, main root length, fresh and dry mass of shoots, roots and cotyledons were evaluated. From the first lot of seeds, there was 100% germination, both for the whole seeds and for the half-seeds. For all traits evaluated, higher mean values were observed for seedlings formed from whole seeds. In the second lot of seeds, 88% of germination was observed for whole seeds and 82% of germination for half-seeds. In this second lot, there were no significant differences between the seedlings formed from whole seeds and half-seeds for any of the characteristics evaluated, except for fresh and dry mass of cotyledons. Thus, it is possible to produce two seedlings or rootstocks with a single avocado seed, although this may slightly delay the development of the seedlings
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21. Needle guard
- Author
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Jackson, AP
- Published
- 1992
22. One more JCLC nod.
- Author
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Jackson AP
- Published
- 2007
23. A sensitive and affordable multiplex RT-qPCR assay for SARS-CoV-2 detection
- Author
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Jürgen Haas, Holly A. Black, Elias T. Friman, Christine Mordstein, Edward J. Jarman, Toby W. Hurd, Austin Diamond, Jacqueline K. Rainger, David A. Parry, Juan Carlos Acosta, Nadine Wilkinson, Ian R. Adams, Marion F Walker, Martin A M Reijns, Marie O'Shea, Martyna Adamowicz, Andrew P. Jackson, Carolina Uggenti, Frederic Li Mow Chee, Stewart McKay, Kate Templeton, Ingolfur Johannessen, David Moore, Sophie J. Warlow, Louise Thompson, Jill Shepherd, Camilla Drake, Francisco J. Sanchez-Luque, Alan O'Callaghan, Alison Daniels, Ian Tomlinson, Maria C. Sanchez, Morad Ansari, Michelle L.L. McNab, Christine Tait-Burkard, Louise Slater, Dasa Longman, Nick Gilbert, [Reijns,MAM, Sanchez-Luque,FJ, Parry,DA, O'Callaghan,A, Friman,ET, Hurd,T, Jarman,EJ, Rainger,JK, Drake,C, Longman,D, Mordstein,C, McKay,S, Gilbert,N, Adams,IR, Jackson,AP] MRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, The University of Edinburgh, Edinburgh, United Kingdom. [Thompson,L, Black,HA, Diamond,A, Slater,L, Ansari,M, Moore,D] The South East of Scotland Clinical Genetic Service, Western General Hospital, NHS Lothian, Edinburgh, United Kingdom. [Acosta,JC, Chee,FLM, Walker,M, Tomlinson,IPM] Cancer Research UK Edinburgh Centre, MRC Institute of Genetics and Molecular Medicine, The University of Edinburgh, Edinburgh, United Kingdom. [Black,HA, Uggenti,C, Adamowicz,M, Warlow,SJ] Centre for Genomic & Experimental Medicine, MRC Institute of Genetics and Molecular Medicine, The University of Edinburgh, Edinburgh, United Kingdom. [Sanchez-Luque,FJ] Centre Pfizer-University of Granada-Andalusian Government for Genomics and Oncological Research (Genyo), Granada, Spain. [Daniels,A, Sanchez,MC, McNab,MLL, Haas,JG] Division of Infection Medicine, Edinburgh Medical School, The University of Edinburgh, Edinburgh, United Kingdom. [O'Shea,M, Tait-Burkard,C] The Roslin Institute and Royal (Dick) School of Veterinary Studies, The University of Edinburgh, Edinburgh, United Kingdom. [Mordstein,C] The Milner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, Bath, United Kingdom. [Wilkinson,N, Shepherd,J, Templeton,K, and Johannessen.I] Medical Microbiology and Virology Service, Royal Infirmary of Edinburgh, NHS Lothian, Edinburgh, United Kingdom.
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0301 basic medicine ,RNA viruses ,Viral Diseases ,Coronaviruses ,Multiplex polymerase chain reaction ,Artificial Gene Amplification and Extension ,Molecular biology assays and analysis techniques ,medicine.disease_cause ,Polymerase Chain Reaction ,Biochemistry ,law.invention ,Organisms::Eukaryota::Animals::Chordata::Vertebrates::Mammals::Primates::Haplorhini::Catarrhini::Hominidae::Humans [Medical Subject Headings] ,0302 clinical medicine ,Medical Conditions ,COVID-19 Testing ,law ,Nucleic Acids ,Reacción en cadena de la polimerasa ,Multiplex ,030212 general & internal medicine ,Biology (General) ,Reverse transcriptase polymerase chain reaction ,Polymerase chain reaction ,Pathology and laboratory medicine ,Virus Testing ,RNA, viral ,Coronavirus ,Reverse Transcriptase Polymerase Chain Reaction ,General Neuroscience ,Methods and Resources ,Diagnostic test ,Medical microbiology ,Analytical, Diagnostic and Therapeutic Techniques and Equipment::Investigative Techniques::Genetic Techniques::Nucleic Acid Amplification Techniques::Polymerase Chain Reaction::Reverse Transcriptase Polymerase Chain Reaction [Medical Subject Headings] ,Sample quality ,Infectious Diseases ,PCR ,Viruses ,RNA, Viral ,SARS CoV 2 ,Pathogens ,General Agricultural and Biological Sciences ,SARS coronavirus ,Coronavirus disease 2019 (COVID-19) ,QH301-705.5 ,ARN, viral ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Biology ,Research and Analysis Methods ,Microbiology ,General Biochemistry, Genetics and Molecular Biology ,Analytical, Diagnostic and Therapeutic Techniques and Equipment::Diagnosis::Diagnostic Techniques and Procedures::Clinical Laboratory Techniques::Immunologic Tests [Medical Subject Headings] ,03 medical and health sciences ,Analytical, Diagnostic and Therapeutic Techniques and Equipment::Investigative Techniques::Genetic Techniques::Nucleic Acid Amplification Techniques::Polymerase Chain Reaction::Multiplex Polymerase Chain Reaction [Medical Subject Headings] ,Diagnostic Medicine ,medicine ,Humans ,Reacción en cadena de la polimerasa multiplex ,Chemicals and Drugs::Nucleic Acids, Nucleotides, and Nucleosides::Nucleic Acids::RNA::RNA, Viral [Medical Subject Headings] ,Viral rna ,CAT assay ,Molecular Biology Techniques ,Molecular Biology ,Medicine and health sciences ,SARS ,Reacción en cadena de la polimerasa de transcriptasa inversa ,General Immunology and Microbiology ,Biology and life sciences ,SARS-CoV-2 ,business.industry ,Organisms ,Viral pathogens ,COVID-19 ,Analytical, Diagnostic and Therapeutic Techniques and Equipment::Investigative Techniques::Genetic Techniques::Nucleic Acid Amplification Techniques::Polymerase Chain Reaction [Medical Subject Headings] ,Health Care::Environment and Public Health::Public Health::Disease Outbreaks::Epidemics::Pandemics [Medical Subject Headings] ,Covid 19 ,Immunologic tests ,Pruebas inmunológicas ,Human control ,Virology ,Microbial pathogens ,030104 developmental biology ,Nucleic acid ,business ,Multiplex Polymerase Chain Reaction - Abstract
With the ongoing COVID-19 (Coronavirus Disease 2019) pandemic, caused by the novel coronavirus SARS-CoV-2 (Severe Acute Respiratory Syndrome Coronavirus 2), there is a need for sensitive, specific, and affordable diagnostic tests to identify infected individuals, not all of whom are symptomatic. The most sensitive test involves the detection of viral RNA using RT-qPCR (quantitative reverse transcription PCR), with many commercial kits now available for this purpose. However, these are expensive, and supply of such kits in sufficient numbers cannot always be guaranteed. We therefore developed a multiplex assay using well-established SARS-CoV-2 targets alongside a human cellular control (RPP30) and a viral spike-in control (Phocine Herpes Virus 1 [PhHV-1]), which monitor sample quality and nucleic acid extraction efficiency, respectively. Here, we establish that this test performs as well as widely used commercial assays, but at substantially reduced cost. Furthermore, we demonstrate >1,000-fold variability in material routinely collected by combined nose and throat swabbing and establish a statistically significant correlation between the detected level of human and SARS-CoV-2 nucleic acids. The inclusion of the human control probe in our assay therefore provides a quantitative measure of sample quality that could help reduce false-negative rates. We demonstrate the feasibility of establishing a robust RT-qPCR assay at approximately 10% of the cost of equivalent commercial assays, which could benefit low-resource environments and make high-volume testing affordable., Better and cheaper SARS-CoV-2 qRT-PCR tests are needed, but it is known that human and viral nucleic acid quantities in swab samples correlate, showing the importance of a human quality control probe. This study describes multiplex assays that perform equally well to commercial tests, but at ~10% of the cost.
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- 2020
24. Neuromyelitis optica in patients with increased interferon alpha concentrations
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Jac Williams, Sarah McGlasson, Sarosh Irani, Darragh Duffy, Yanick Crow, David Hunt, Katy Murray, Robert Wilson, Andrew P Jackson, Alexa Jury, Mathieu Rodero, Vincent Bondet, Anu Jacob, Shahd Hamid, Nuno Cordeiro, Ondrej Dolezal, Patrick Statham, Stewart Wiseman, Joanna Wardlaw, Christina Hertel, Adrian Hayday, Anne Rowling Clinic [Edinburgh, UK], University of Edinburgh, Medical Research Council Institute of Genetics and Molecular Medicine [Edinburgh, UK], Oxford Autoimmune Neurology Group [Oxford, UK], University of Oxford, Immunobiologie des Cellules dendritiques, Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM), DH is supported by the Wellcome Trust (215621/Z/19/Z) and the Medical Research Foundation. YC is supported by an European Research Council advanced grant (786142-E-T1IFNs). YC and DH are supported by Connect Immune research (Multiple Sclerosis Society, Juvenile Diabetes Research Foundation, Versus Arthritis). AJ is supported by the UK Medical Research Council. SRI is supported by the Wellcome Trust (104079/Z/14/Z), the British Medical Association's Vera Down (2013) and Margaret Temple (2017) grants, and Epilepsy Research UK (P1201). The research was funded by the National Institute for Health Research (NIHR) Oxford Biomedical Research Centre., We thank the Uppsala Monitoring Centre (Uppsala, Sweden) and the UK Medicines and Healthcare products Regulatory Agency for providing spontaneous reporting data. We thank our patients for willingness and consent to report these cases. Patients 1, 3, and 4 were enrolled in clinical studies approved by: Leeds (East) Research Ethics Committee (10/H1307/132, patient 3) and South-East Scotland Research Ethics Committee 01 (14/SS/0003, patients 1 and 4). The Scottish Neuromyelitis Optica Spectrum Disorder Clinic is part of the NHS NMO UK specialised service., Scottish NMOSD study group : Murray K, Wilson R, Jackson AP, Jury A, Rodero M, Bondet V, Jacob A, Hamid S, Cordeiro N, Dolezal O, Statham P, Wiseman S, Wardlaw J, Hertel C, Hayday A., Laboratoire de Chimie et de Biochimie Pharmacologiques et Toxicologiques (LCBPT - UMR 8601), Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP), University of Oxford [Oxford], Immunologie Translationnelle - Translational Immunology, Institut Pasteur [Paris], Imagine - Institut des maladies génétiques (IHU) (Imagine - U1163), Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP), Dept Neurology, Western General Hospital, Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut Pasteur [Paris], Imagine - Institut des maladies génétiques (IMAGINE - U1163), and Vougny, Marie-Christine
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0303 health sciences ,medicine.medical_specialty ,Neuromyelitis optica ,[SDV.IMM] Life Sciences [q-bio]/Immunology ,business.industry ,[SDV]Life Sciences [q-bio] ,Alpha interferon ,medicine.disease ,Gastroenterology ,3. Good health ,03 medical and health sciences ,0302 clinical medicine ,Text mining ,Internal medicine ,medicine ,[SDV.IMM]Life Sciences [q-bio]/Immunology ,In patient ,Neurology (clinical) ,business ,030217 neurology & neurosurgery ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology - Abstract
International audience; Recombinant interferon alpha is used to treat several immunological, oncological, and infectious diseases,1 and various serious side-effects have been associated with its therapeutic use. We want to bring attention to the development of neuromyelitis optica spectrum disorder (NMOSD) [...]
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- 2020
25. Diversification of sphingolipid synthase activities in kinetoplastid protozoa.
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Ciganda M, Jackson AP, and Bangs JD
- Abstract
Phosphosphingolipids (PSL) are essential components of eukaryotic membranes. The major PSL in fungi and protists is inositol phosphorylceramide (IPC), while sphingomyelin (SM), and to a lesser extent ethanolamine phosphorylceramide (EPC) predominate in mammals. Most kinetoplastid protozoa have a syntenic locus that encodes a single sphingolipid synthase (SLS) gene. Uniquely, among the kinetoplastids, the salivarian (African) trypanosomes have expanded this locus from a single gene in Trypanosoma vivax (TvSLS) to four genes in T. brucei (TbSLS1-4). We have previously shown that one of these is an IPC synthase, while the others are SM/EPC synthases, and that specificity is controlled by a single signature residue (IPC, serine; SM/EPC, phenylalanine). This residue is serine in T. cruzi and Leishmania major SLSs, both of which are demonstrated IPC synthases. However, T. vivax has a tyrosine at this residue raising the issue of specificity. Using a liposome-supplemented in vitro translation system we now show that T. vivax SLS is an SM/EPC synthase, and that the basal kinetoplastid Bodo saltans SLS is an IPC synthase (serine). We use these data, and a multiple alignment of available sequences, to discuss the evolution of kinetoplastid SLSs and their unique expansion in T. brucei and related salivarian trypanosomes., Competing Interests: Declaration of Competing Interest None., (Copyright © 2024 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2024
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26. Is the voltage-gated sodium channel β3 subunit (SCN3B) a biomarker for glioma?
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Liu H, Weng J, Huang CL, and Jackson AP
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- Humans, Prognosis, Brain Neoplasms genetics, Brain Neoplasms metabolism, Brain Neoplasms immunology, NAV1.3 Voltage-Gated Sodium Channel genetics, NAV1.3 Voltage-Gated Sodium Channel metabolism, Oligodendroglioma genetics, Oligodendroglioma metabolism, Biomarkers, Tumor genetics, Biomarkers, Tumor metabolism, Glioma genetics, Glioma metabolism, Glioma immunology
- Abstract
Recent studies suggest a need for reliable biomarkers enhancing prognosis prediction and treatment strategies in cancer. Here, we performed a data analysis bearing on the expression of SCN3B, voltage-gated sodium channel (VGSC) β3 subunit, as a possible candidate for the development of a glioma biomarker for the first time. This extends our previous review article that mentioned the potential of SCN3B as a prognostic biomarker for glioma survival, further examining its association with existing indicators and immune responses. We utilized clinical and genomic data from multiple glioma cohorts. These include the Cancer Genome Atlas (TCGA) and the Chinese Glioma Genome Atlas (CGGA). We employed analytical techniques including time-dependent receiver operating characteristic (ROC) analysis, decision curves analysis (DCA), and correlation studies with immune checkpoint markers. Our findings indicate a differential SCN3B expression between glioma grades, and that this significantly correlates with patient survival, particularly in oligodendroglioma subtypes. The DCA curves suggested that the inclusion of SCN3B in the prognostic model would improve decision-making in these subtypes. Moreover, SCN3B expression positively correlated with the presence of key immune cells and negatively correlated with several immune checkpoint inhibitors. This suggests potential roles in modulating immune responses in glioma. Thus, SCN3B emerges as a promising potential prognostic biomarker for glioma, especially for oligodendroglioma. Its dual correlations with prognosis and immune regulation present a compelling case for further experimental and clinical investigations to establish its utility in enhancing glioma management strategies. These findings underscore the importance of integrating novel biomarkers with traditional prognostic models to refine treatment paradigms and improve patient outcomes., (© 2024. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)
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- 2024
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27. A novel Na v 1.5-dependent feedback mechanism driving glycolytic acidification in breast cancer metastasis.
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Leslie TK, Tripp A, James AD, Fraser SP, Nelson M, Sajjaboontawee N, Capatina AL, Toss M, Fadhil W, Salvage SC, Garcia MA, Beykou M, Rakha E, Speirs V, Bakal C, Poulogiannis G, Djamgoz MBA, Jackson AP, Matthews HR, Huang CL, Holding AN, Chawla S, and Brackenbury WJ
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- Humans, Animals, Female, Mice, Cell Line, Tumor, Hydrogen-Ion Concentration, Feedback, Physiological, Sodium metabolism, Gene Expression Regulation, Neoplastic, Neoplasm Invasiveness, NAV1.5 Voltage-Gated Sodium Channel metabolism, NAV1.5 Voltage-Gated Sodium Channel genetics, Breast Neoplasms pathology, Breast Neoplasms metabolism, Breast Neoplasms genetics, Glycolysis, Neoplasm Metastasis
- Abstract
Solid tumours have abnormally high intracellular [Na
+ ]. The activity of various Na+ channels may underlie this Na+ accumulation. Voltage-gated Na+ channels (VGSCs) have been shown to be functionally active in cancer cell lines, where they promote invasion. However, the mechanisms involved, and clinical relevance, are incompletely understood. Here, we show that protein expression of the Nav 1.5 VGSC subtype strongly correlates with increased metastasis and shortened cancer-specific survival in breast cancer patients. In addition, VGSCs are functionally active in patient-derived breast tumour cells, cell lines, and cancer-associated fibroblasts. Knockdown of Nav 1.5 in a mouse model of breast cancer suppresses expression of invasion-regulating genes. Nav 1.5 activity increases ATP demand and glycolysis in breast cancer cells, likely by upregulating activity of the Na+ /K+ ATPase, thus promoting H+ production and extracellular acidification. The pH of murine xenograft tumours is lower at the periphery than in the core, in regions of higher proliferation and lower apoptosis. In turn, acidic extracellular pH elevates persistent Na+ influx through Nav 1.5 into breast cancer cells. Together, these findings show positive feedback between extracellular acidification and the movement of Na+ into cancer cells which can facilitate invasion. These results highlight the clinical significance of Nav 1.5 activity as a potentiator of breast cancer metastasis and provide further evidence supporting the use of VGSC inhibitors in cancer treatment., (© 2024. The Author(s).)- Published
- 2024
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28. Voltage-gated sodium channels in cancers.
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Liu H, Weng J, Huang CL, and Jackson AP
- Abstract
Voltage-gated sodium channels (VGSCs) initiate action potentials in electrically excitable cells and tissues. Surprisingly, some VGSC genes are aberrantly expressed in a variety of cancers, derived from "non-excitable" tissues that do not generate classic action potentials, showing potential as a promising pharmacological target for cancer. Most of the previous review articles on this topic are limited in scope, and largely unable to provide researchers with a comprehensive understanding of the role of VGSC in cancers. Here, we review the expression patterns of all nine VGSC α-subunit genes (SCN1A-11A) and their four regulatory β-subunit genes (SCN1B-4B). We reviewed data from the Cancer Genome Atlas (TCGA) database, complemented by an extensive search of the published papers. We summarized and reviewed previous independent studies and analyzed the VGSC genes in the TCGA database regarding the potential impact of VGSC on cancers. A comparison between evidence gathered from independent studies and data review was performed to scrutinize potential biases in prior research and provide insights into future research directions. The review supports the view that VGSCs play an important role in diagnostics as well as therapeutics of some cancer types, such as breast, colon, prostate, and lung cancer. This paper provides an overview of the current knowledge on voltage-gated sodium channels in cancer, as well as potential avenues for further research. While further research is required to fully understand the role of VGSCs in cancer, the potential of VGSCs for clinical diagnosis and treatment is promising., (© 2024. The Author(s).)
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- 2024
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29. The 2024 British Society for Parasitology Spring Meeting: promoting innovation across the community.
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Jackson AP, Ahmed F, Bent L, Deles G, Lester E, and Ogunmola J
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- Humans, United Kingdom, Parasitology trends, Societies, Scientific organization & administration
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- 2024
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30. Evaluating the impact of gypsum as a novel bedding material on broiler performance, foot pad health, and fear response.
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Escobar C, Watts DB, Torbert HA, Bailey MA, Krehling JT, Landers D, Jackson AP, Gilpin M, Still K, Munoz LR, Orellana L, Adhikari Y, Macklin KS, and Baker-Cook B
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- Animals, Floors and Floorcoverings, Random Allocation, Male, Animal Husbandry methods, Dermatitis veterinary, Chickens physiology, Calcium Sulfate chemistry, Calcium Sulfate administration & dosage, Calcium Sulfate pharmacology, Poultry Diseases, Fear, Housing, Animal, Foot Diseases veterinary
- Abstract
Flue Gas Desulfurization (FGD) gypsum is a byproduct of the coal-fired power plant process commonly used to remove sulfur dioxide emissions from the flue gas. FGD gypsum has numerous industrial, agricultural, and environmental applications. This study aimed to explore a novel approach involving the use of FGD gypsum combined with different litter treatments as bedding for broiler production. It focused on performance metrics, including adjusted feed conversion ratio (AFCR) and average body weight (BW), foot pad dermatitis (FPD), and fear response over 5 consecutive flocks. A total of 1,800 one-day-old Ross 708 chicks were randomly assigned to 24 pens (75 birds/pen), divided into 6 treatment groups (4 pens/treatment), with 5 replications and raised until 42 d old (d). Treatments were gypsum that was decaked (D), rotovated (E), and rotovated then windrowed (F) between flocks. Control treatments using pine shavings were decaked (A), rotovated (B), and windrowed postrotovating (C). AFCR, average BW, and mortality were used as a measure of production. Foot pad dermatitis scores were taken on d42 using a scale of 0 (absence), 1 (mild), and 2 (severe). Response to observer and human approach test were used to measure fear response. Data were analyzed as a 2-way ANOVA (Proc Glimmix) for the main effects of bedding type and litter treatment. Means were identified using Tukey's HSD. No effect of bedding type or litter treatment was found for AFCR, BW, or mortality. FPD scores 2 and 1, were higher with pine shavings than gypsum (P = 0.01 and P = 0.01, respectively). While FPD scores 0 were higher for gypsum than the pine shaving (P = 0.01). No difference in fear response was found among birds raised on any of the gypsum litter treatments and any of the pine shaving litter treatments. Overall, the use of gypsum as bedding results in equivalent production and fear response to pine shavings, while increasing FPD quality when compared to pine shaving., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)
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- 2024
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31. Mutations in TOP3A Cause a Bloom Syndrome-like Disorder.
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Martin CA, Sarlós K, Logan CV, Thakur RS, Parry DA, Bizard AH, Leitch A, Cleal L, Ali NS, Al-Owain MA, Allen W, Altmüller J, Aza-Carmona M, Barakat BAY, Barraza-García J, Begtrup A, Bogliolo M, Cho MT, Cruz-Rojo J, Mundi Dhahrabi HA, Elcioglu NH, GOSgene, Gorman GS, Jobling R, Kesterton I, Kishita Y, Kohda M, Le Quesne Stabej P, Malallah AJ, Nürnberg P, Ohtake A, Okazaki Y, Pujol R, Ramirez MJ, Revah-Politi A, Shimura M, Stevens P, Taylor RW, Turner L, Williams H, Wilson C, Yigit G, Zahavich L, Alkuraya FS, Surralles J, Iglesias A, Murayama K, Wollnik B, Dattani M, Heath KE, Hickson ID, and Jackson AP
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- 2024
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32. Single mothers' perceptions of neighborhood social cohesion, parenting stress, adverse childhood experiences in early childhood and Black children's behavior problems in middle childhood and adolescence.
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Ray JA, Preston KSJ, and Jackson AP
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- Female, Humans, Child, Preschool, Child, Adolescent, Parenting, Social Cohesion, Mothers, Adverse Childhood Experiences, Problem Behavior
- Abstract
This study examined the roles of neighborhood social cohesion, adverse childhood experiences (ACEs), and parenting stress in early childhood on child behavioral outcomes in middle childhood and adolescence among socioeconomically disadvantaged Black families. To test a model linking perceptions of neighborhood social cohesion, single mothers' parenting stress, ACEs, and behavior problems in middle childhood and adolescence. We used four waves of longitudinal data from a subsample of 800 unmarried Black mothers and their children (at child birth and ages 3, 5, 9, and 15) from the Future of Families and Child Wellbeing Study, a nationally representative data set. Structural equation modeling with latent variables was used to measure direct and indirect effects. Mothers' perceptions of neighborhood social cohesion were significantly and negatively associated parenting stress (β = -0.34, p < 0.05); parenting stress was significantly and positively related to adverse childhood experiences (β = 0.40, p < 0.05) and behavior problems (β = 0.32, p < 0.05); Adverse childhood experiences were significantly and positively related to behavior problems (β = 0.26, p < 0.05); and behavior problems were indirectly influenced by neighborhood social cohesion through adverse childhood experiences (β = -0.14, p < 0.05) and parenting stress (β = 0.10, p < 0.05). Neighborhood factors may play a significant role in parenting stress, adverse childhood experiences in early childhood, and children's behavior problems in middle childhood and adolescence among some single mothers and children in economically and socially disadvantaged Black families. Interventions that enhance neighborhood social cohesion and foster supportive interactions among community members and organizations are recommended., (© 2024 Wiley Periodicals LLC.)
- Published
- 2024
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33. Cardiac arrhythmogenesis: roles of ion channels and their functional modification.
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Lei M, Salvage SC, Jackson AP, and Huang CL
- Abstract
Cardiac arrhythmias cause significant morbidity and mortality and pose a major public health problem. They arise from disruptions in the normally orderly propagation of cardiac electrophysiological activation and recovery through successive cardiomyocytes in the heart. They reflect abnormalities in automaticity, initiation, conduction, or recovery in cardiomyocyte excitation. The latter properties are dependent on surface membrane electrophysiological mechanisms underlying the cardiac action potential. Their disruption results from spatial or temporal instabilities and heterogeneities in the generation and propagation of cellular excitation. These arise from abnormal function in their underlying surface membrane, ion channels, and transporters, as well as the interactions between them. The latter, in turn, form common regulatory targets for the hierarchical network of diverse signaling mechanisms reviewed here. In addition to direct molecular-level pharmacological or physiological actions on these surface membrane biomolecules, accessory, adhesion, signal transduction, and cytoskeletal anchoring proteins modify both their properties and localization. At the cellular level of excitation-contraction coupling processes, Ca
2+ homeostatic and phosphorylation processes affect channel activity and membrane excitability directly or through intermediate signaling. Systems -level autonomic cellular signaling exerts both acute channel and longer-term actions on channel expression. Further upstream intermediaries from metabolic changes modulate the channels both themselves and through modifying Ca2+ homeostasis. Finally, longer-term organ -level inflammatory and structural changes, such as fibrotic and hypertrophic remodeling, similarly can influence all these physiological processes with potential pro-arrhythmic consequences. These normal physiological processes may target either individual or groups of ionic channel species and alter with particular pathological conditions. They are also potentially alterable by direct pharmacological action, or effects on longer-term targets modifying protein or cofactor structure, expression, or localization. Their participating specific biomolecules, often clarified in experimental genetically modified models, thus constitute potential therapeutic targets. The insights clarified by the physiological and pharmacological framework outlined here provide a basis for a recent modernized drug classification. Together, they offer a translational framework for current drug understanding. This would facilitate future mechanistically directed therapeutic advances, for which a number of examples are considered here. The latter are potentially useful for treating cardiac, in particular arrhythmic, disease., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Lei, Salvage, Jackson and Huang.)- Published
- 2024
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34. Nernst-Planck-Gaussian modelling of electrodiffusional recovery from ephaptic excitation between mammalian cardiomyocytes.
- Author
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Morris JA, Bardsley OJ, Salvage SC, Jackson AP, Matthews HR, and Huang CL
- Abstract
Introduction: In addition to gap junction conduction, recent reports implicate possible ephaptic coupling contributions to action potential (AP) propagation between successive adjacent cardiomyocytes. Here, AP generation in an active cell, withdraws Na
+ from, creating a negative potential within, ephaptic spaces between the participating membranes, activating the initially quiescent neighbouring cardiomyocyte. However, sustainable ephaptic transmission requires subsequent complete recovery of the ephaptic charge difference. We explore physical contributions of passive electrodiffusive ion exchange with the remaining extracellular space to this recovery for the first time. Materials and Methods: Computational, finite element, analysis examined limiting, temporal and spatial, ephaptic [Na+ ], [Cl- ], and the consequent Gaussian charge differences and membrane potential recovery patterns following a Δ V ∼130 mV AP upstroke at physiological (37°C) temperatures. This incorporated Nernst-Planck formalisms into equations for the time-dependent spatial concentration gradient profiles. Results: Mammalian atrial, ventricular and purkinje cardiomyocyte ephaptic junctions were modelled by closely apposed circularly symmetric membranes, specific capacitance 1 μF cm-2 , experimentally reported radii a = 8,000, 12,000 and 40,000 nm respectively and ephaptic axial distance w = 20 nm. This enclosed an ephaptic space containing principal ions initially at normal extracellular [Na+ ] = 153.1 mM and [Cl- ] = 145.8 mM, respective diffusion coefficients DNa = 1.3 × 109 and DCl = 2 × 109 nm2 s-1 . Stable, concordant computational solutions were confirmed exploring ≤1,600 nm mesh sizes and Δ t ≤0.08 ms stepsize intervals. The corresponding membrane voltage profile changes across the initially quiescent membrane were obtainable from computed, graphically represented a and w -dependent ionic concentration differences adapting Gauss's flux theorem. Further simulations explored biological variations in ephaptic dimensions, membrane anatomy, and diffusion restrictions within the ephaptic space. Atrial, ventricular and Purkinje cardiomyocytes gave 40, 180 and 2000 ms 99.9% recovery times, with 720 or 360 ms high limits from doubling ventricular radius or halving diffusion coefficient. Varying a , and DNa and DCl markedly affected recovery time-courses with logarithmic and double-logarithmic relationships, Varying w exerted minimal effects. Conclusion: We thereby characterise the properties of, and through comparing atrial, ventricular and purkinje recovery times with interspecies in vivo background cardiac cycle duration data, (blue whale ∼2000, human∼90, Etruscan shrew, ∼40 ms) can determine physical limits to, electrodiffusive contributions to ephaptic recovery., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Morris, Bardsley, Salvage, Jackson, Matthews and Huang.)- Published
- 2024
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35. In vitro Effect of Photoactive Compounds Curcumin and Chlorophyllin Against Single Strains of Salmonella and Campylobacter.
- Author
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Urrutia A, Orellana L, Sierra KS, Reina M, Figueroa JC, Jackson AP, Macklin KS, Buhr RJ, and Bourassa DV
- Subjects
- Animals, Chickens, Peracetic Acid pharmacology, Salmonella typhimurium, Food Microbiology, Campylobacter, Curcumin pharmacology, Anti-Infective Agents pharmacology
- Abstract
Salmonella and Campylobacter are two of the most common foodborne pathogens associated with poultry meat. Regulatory restrictions and consumer concerns have increased the interest for plant-derived antimicrobials and emerging novel technologies. The objective of this study was to determine the antimicrobial activity of photoactive compounds curcumin (CUR) and chlorophyllin (CH) followed by activating light exposure for the reduction of Salmonella and Campylobacter. Peroxyacetic acid (PAA) was also evaluated as a poultry industry standard antimicrobial processing aid. CUR and CH were evaluated in 96-well plates at concentrations of 100, 500, and 1,000 ppm, along with PAA at 100, 200, and 300 ppm, or distilled water (DW). Each well was inoculated with 10
5 CFU/mL of Salmonella Typhimurium or Campylobacter jejuni, and plates were exposed to activating light (430 nm) for 0 or 5 min. No detectable reductions were observed for Salmonella or Campylobacter when treated with CUR, CH, or 100 ppm PAA. However, when Salmonella was treated with 200 ppm PAA, counts were reduced from 4.57 to 2.52 log10 CFU/mL. When Salmonella was treated with 300 ppm PAA, counts were reduced to below detectable levels (5 CFU/mL). Campylobacter was reduced from 4.67 to 2.82 log10 CFU/mL when treated with 200 ppm PAA. However, no further reductions were observed when Campylobacter was treated with 300 ppm PAA (2.50 log10 CFU/mL). These results indicate that CUR and CH were not effective as antimicrobials under the evaluated conditions, particularly in comparison to the commonly used antimicrobial, PAA., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 The Author(s). Published by Elsevier Inc. All rights reserved.)- Published
- 2023
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36. In silico protein interaction screening uncovers DONSON's role in replication initiation.
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Lim Y, Tamayo-Orrego L, Schmid E, Tarnauskaite Z, Kochenova OV, Gruar R, Muramatsu S, Lynch L, Schlie AV, Carroll PL, Chistol G, Reijns MAM, Kanemaki MT, Jackson AP, and Walter JC
- Subjects
- Animals, Humans, Mice, Saccharomyces cerevisiae, Saccharomyces cerevisiae Proteins, Protein Interaction Mapping methods, Computer Simulation, Dwarfism genetics, Microcephaly genetics, Xenopus laevis, Cell Cycle Proteins genetics, Cell Cycle Proteins metabolism, DNA Replication, DNA-Binding Proteins metabolism, Minichromosome Maintenance Proteins genetics, Minichromosome Maintenance Proteins metabolism, Nuclear Proteins genetics, Nuclear Proteins metabolism
- Abstract
CDC45-MCM2-7-GINS (CMG) helicase assembly is the central event in eukaryotic replication initiation. In yeast, a multi-subunit "pre-loading complex" (pre-LC) accompanies GINS to chromatin-bound MCM2-7, leading to CMG formation. Here, we report that DONSON, a metazoan protein mutated in microcephalic primordial dwarfism, is required for CMG assembly in vertebrates. Using AlphaFold to screen for protein-protein interactions followed by experimental validation, we show that DONSON scaffolds a vertebrate pre-LC containing GINS, TOPBP1, and DNA pol ε. Our evidence suggests that DONSON docks the pre-LC onto MCM2-7, delivering GINS to its binding site in CMG. A patient-derived DONSON mutation compromises CMG assembly and recapitulates microcephalic dwarfism in mice. These results unify our understanding of eukaryotic replication initiation, implicate defective CMG assembly in microcephalic dwarfism, and illustrate how in silico protein-protein interaction screening accelerates mechanistic discovery.
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- 2023
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37. SARS-CoV-2 Omicron subvariant spike N405 unlikely to rapidly deamidate.
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Beaudoin CA, Petsolari E, Hamaia SW, Hala S, Alofi FS, Pandurangan AP, Blundell TL, Chaitanya Vedithi S, Huang CL, and Jackson AP
- Subjects
- Humans, SARS-CoV-2, Spike Glycoprotein, Coronavirus genetics, Asparagine, Integrin alphaVbeta3, COVID-19
- Abstract
The RGD motif on the SARS-CoV-2 spike protein has been suggested to interact with RGD-binding integrins αVβ3 and α5β1 to enhance viral cell entry and alter downstream signaling cascades. The D405N mutation on the Omicron subvariant spike proteins, resulting in an RGN motif, has recently been shown to inhibit binding to integrin αVβ3. Deamidation of asparagines in protein ligand RGN motifs has been demonstrated to generate RGD and RGisoD motifs that permit binding to RGD-binding integrins. Two asparagines, N481 and N501, on the Wild-type spike receptor-binding domain have been previously shown to have deamidation half-lives of 16.5 and 123 days, respectively, which may occur during the viral life cycle. Deamidation of Omicron subvariant N405 may recover the ability to interact with RGD-binding integrins. Thus, herein, all-atom molecular dynamics simulations of the Wild-type and Omicron subvariant spike protein receptor-binding domains were conducted to investigate the potential for asparagines, the Omicron subvariant N405 in particular, to assume the optimized geometry for deamidation to occur. In summary, the Omicron subvariant N405 was primarily found to be stabilized in a state unfavourable for deamidation after hydrogen bonding with downstream E406. Nevertheless, a small number of RGD or RGisoD motifs on the Omicron subvariant spike proteins may restore the ability to interact with RGD-binding integrins. The simulations also provided structural clarification regarding the deamidation rates of Wild-type N481 and N501 and highlighted the utility of tertiary structure dynamics information in predicting asparagine deamidation. Further work is needed to characterize the effects of deamidation on spike-integrin interactions., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.)
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- 2023
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38. Evolutionary analysis of cellular reduction and anaerobicity in the hyper-prevalent gut microbe Blastocystis.
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Záhonová K, Low RS, Warren CJ, Cantoni D, Herman EK, Yiangou L, Ribeiro CA, Phanprasert Y, Brown IR, Rueckert S, Baker NL, Tachezy J, Betts EL, Gentekaki E, van der Giezen M, Clark CG, Jackson AP, Dacks JB, and Tsaousis AD
- Subjects
- Animals, Humans, Mitochondria genetics, Mitochondria metabolism, Organelles metabolism, Eukaryota, Blastocystis genetics, Gastrointestinal Microbiome genetics
- Abstract
Blastocystis is the most prevalent microbial eukaryote in the human and animal gut, yet its role as commensal or parasite is still under debate. Blastocystis has clearly undergone evolutionary adaptation to the gut environment and possesses minimal cellular compartmentalization, reduced anaerobic mitochondria, no flagella, and no reported peroxisomes. To address this poorly understood evolutionary transition, we have taken a multi-disciplinary approach to characterize Proteromonas lacertae, the closest canonical stramenopile relative of Blastocystis. Genomic data reveal an abundance of unique genes in P. lacertae but also reductive evolution of the genomic complement in Blastocystis. Comparative genomic analysis sheds light on flagellar evolution, including 37 new candidate components implicated with mastigonemes, the stramenopile morphological hallmark. The P. lacertae membrane-trafficking system (MTS) complement is only slightly more canonical than that of Blastocystis, but notably, we identified that both organisms encode the complete enigmatic endocytic TSET complex, a first for the entire stramenopile lineage. Investigation also details the modulation of mitochondrial composition and metabolism in both P. lacertae and Blastocystis. Unexpectedly, we identify in P. lacertae the most reduced peroxisome-derived organelle reported to date, which leads us to speculate on a mechanism of constraint guiding the dynamics of peroxisome-mitochondrion reductive evolution on the path to anaerobiosis. Overall, these analyses provide a launching point to investigate organellar evolution and reveal in detail the evolutionary path that Blastocystis has taken from a canonical flagellated protist to the hyper-divergent and hyper-prevalent animal and human gut microbe., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2023 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
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39. Feedback contributions to excitation-contraction coupling in native functioning striated muscle.
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Salvage SC, Dulhunty AF, Jeevaratnam K, Jackson AP, and Huang CL
- Subjects
- Animals, Mice, Feedback, Muscle, Skeletal, Action Potentials, Calcium metabolism, Ryanodine Receptor Calcium Release Channel chemistry, Ryanodine Receptor Calcium Release Channel genetics, Dantrolene pharmacology
- Abstract
Skeletal and cardiac muscle excitation-contraction coupling commences with Na
v 1.4/Nav 1.5-mediated, surface and transverse (T-) tubular, action potential generation. This initiates feedforward , allosteric or Ca2+ -mediated, T-sarcoplasmic reticular (SR) junctional, voltage sensor-Cav1.1/Cav1.2 and ryanodine receptor-RyR1/RyR2 interaction. We review recent structural, physiological and translational studies on possible feedback actions of the resulting SR Ca2+ release on Nav 1.4/Nav 1.5 function in native muscle. Finite-element modelling predicted potentially regulatory T-SR junctional [Ca2+ ]TSR domains. Nav 1.4/Nav 1.5, III-IV linker and C-terminal domain structures included Ca2+ and/or calmodulin-binding sites whose mutations corresponded to specific clinical conditions. Loose-patch-clamped native murine skeletal muscle fibres and cardiomyocytes showed reduced Na+ currents ( INa ) following SR Ca2+ release induced by the Epac and direct RyR1/RyR2 activators, 8-(4-chlorophenylthio)adenosine-3',5'-cyclic monophosphate and caffeine, abrogated by the RyR inhibitor dantrolene. Conversely, dantrolene and the Ca2+ -ATPase inhibitor cyclopiazonic acid increased INa . Experimental, catecholaminergic polymorphic ventricular tachycardic RyR2-P2328S and metabolically deficient Pgc1β-/- abnormalities rescued by dantrolene- and flecainide-mediated RyR block. Finally, hydroxychloroquine challenge implicated action potential (AP) prolongation in slowing AP conduction through modifying Ca I transients. The corresponding tissue/organ preparations each showed pro-arrhythmic, slowed AP upstrokes and conduction velocities. We finally extend discussion of possible CaNa accompanying [Ca2+ ]i abnormalities rescued by dantrolene- and flecainide-mediated RyR block. Finally, hydroxychloroquine challenge implicated action potential (AP) prolongation in slowing AP conduction through modifying Ca2+ transients. The corresponding tissue/organ preparations each showed pro-arrhythmic, slowed AP upstrokes and conduction velocities. We finally extend discussion of possible Ca2+ -mediated effects to further, Ca2+ , K+ and Cl- , channel types. This article is part of the theme issue 'The heartbeat: its molecular basis and physiological mechanisms'.- Published
- 2023
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40. The β3-subunit modulates the effect of venom peptides ProTx-II and OD1 on Na V 1.7 gating.
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Salvage SC, Rahman T, Eagles DA, Rees JS, King GF, Huang CL, and Jackson AP
- Subjects
- Humans, Peptides pharmacology, Peptides therapeutic use, Analgesics therapeutic use, Pain drug therapy, Venoms therapeutic use, Voltage-Gated Sodium Channels
- Abstract
The voltage-gated sodium channel Na
V 1.7 is involved in various pain phenotypes and is physiologically regulated by the NaV -β3-subunit. Venom toxins ProTx-II and OD1 modulate NaV 1.7 channel function and may be useful as therapeutic agents and/or research tools. Here, we use patch-clamp recordings to investigate how the β3-subunit can influence and modulate the toxin-mediated effects on NaV 1.7 function, and we propose a putative binding mode of OD1 on NaV 1.7 to rationalise its activating effects. The inhibitor ProTx-II slowed the rate of NaV 1.7 activation, whilst the activator OD1 reduced the rate of fast inactivation and accelerated recovery from inactivation. The β3-subunit partially abrogated these effects. OD1 induced a hyperpolarising shift in the V1/2 of steady-state activation, which was not observed in the presence of β3. Consequently, OD1-treated NaV 1.7 exhibited an enhanced window current compared with OD1-treated NaV 1.7-β3 complex. We identify candidate OD1 residues that are likely to prevent the upward movement of the DIV S4 helix and thus impede fast inactivation. The binding sites for each of the toxins and the predicted location of the β3-subunit on the NaV 1.7 channel are distinct. Therefore, we infer that the β3-subunit influences the interaction of toxins with NaV 1.7 via indirect allosteric mechanisms. The enhanced window current shown by OD1-treated NaV 1.7 compared with OD1-treated NaV 1.7-β3 is discussed in the context of differing cellular expressions of NaV 1.7 and the β3-subunit in dorsal root ganglion (DRG) neurons. We propose that β3, as the native binding partner for NaV 1.7 in DRG neurons, should be included during screening of molecules against NaV 1.7 in relevant analgesic discovery campaigns., (© 2023 The Authors. Journal of Cellular Physiology published by Wiley Periodicals LLC.)- Published
- 2023
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41. Cardiac sodium channel complexes and arrhythmia: structural and functional roles of the β1 and β3 subunits.
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Salvage SC, Jeevaratnam K, Huang CL, and Jackson AP
- Subjects
- Humans, Action Potentials physiology, Myocytes, Cardiac metabolism, NAV1.5 Voltage-Gated Sodium Channel metabolism, Sodium Channels metabolism, Protein Subunits, Arrhythmias, Cardiac, Long QT Syndrome
- Abstract
In cardiac myocytes, the voltage-gated sodium channel Na
V 1.5 opens in response to membrane depolarisation and initiates the action potential. The NaV 1.5 channel is typically associated with regulatory β-subunits that modify gating and trafficking behaviour. These β-subunits contain a single extracellular immunoglobulin (Ig) domain, a single transmembrane α-helix and an intracellular region. Here we focus on the role of the β1 and β3 subunits in regulating NaV 1.5. We catalogue β1 and β3 domain specific mutations that have been associated with inherited cardiac arrhythmia, including Brugada syndrome, long QT syndrome, atrial fibrillation and sudden death. We discuss how new structural insights into these proteins raises new questions about physiological function., (© 2022 The Authors. The Journal of Physiology published by John Wiley & Sons Ltd on behalf of The Physiological Society.)- Published
- 2023
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42. Depression and HIV risks: Engaging older African American women in HIV prevention education through the church.
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Ebor MT and Jackson AP
- Abstract
This report describes the recruitment of a sample of older African American women to test the effectiveness of an educational HIV prevention intervention that sought to reduce depressive symptoms and thereby HIV risks in this population. The outreach venue is the Black church. A framework for maximizing response is suggested. Of 62 women who participated in two arms of the intervention, 29 were assigned randomly to a four-session discussion group (experimental condition) and 33 were assigned to a one-session informational group (control condition) focused on HIV prevention education. Between-within subjects analyses of variance showed that participation in the study was associated with a significant improvement in the women's psychological status, i.e., decreased depressive symptoms. This change in depressive symptoms was due in part to the experimental condition assignment. Implications for future HIV prevention interventions, research, and methods used to maximize the probability of response among older African American women are discussed., Competing Interests: Both authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The reviewer NH declared a shared affiliation with the author AJ to the handling editor at the time of review., (© 2023 Ebor and Jackson.)
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- 2023
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43. Some Pertinent Issues for Interstellar Panspermia Raised after the Discovery of 1I/'Oumuamua.
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Desch SJ and Jackson AP
- Subjects
- Bees, Animals, Ice
- Abstract
The interstellar objects 1I/'Oumuamua and 2I/Borisov confirm the long-held expectation that bodies from one stellar system will be carried to another, allowing, in principle, interstellar panspermia. Life might be transferred between stellar systems, depending on the nature of the bodies and how they escaped their systems. 2I/Borisov appears to be a comet, with no more likelihood of carrying life than Solar System comets. In contrast, the nature of 1I/'Oumuamua has been difficult to determine. We review various hypotheses for its origin, including ejection of N
2 ice from the surface of an exo-Pluto, formation in a molecular cloud by freezing of H2 , and a derelict solar sail of alien construction. Of these, the N2 ice fragment hypothesis is uniquely falsifiable, plausible, and completely consistent with all observations. The possibility of interstellar panspermia would be made more probable if 'Oumuamua originated on a dwarf planet rather than a comet, although substantial challenges to transfer of life would remain. Of proposed mechanisms for interstellar panspermia, transfer of life via rocky meteoroids is perhaps less improbable.- Published
- 2022
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44. Pathogenic variants in SLF2 and SMC5 cause segmented chromosomes and mosaic variegated hyperploidy.
- Author
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Grange LJ, Reynolds JJ, Ullah F, Isidor B, Shearer RF, Latypova X, Baxley RM, Oliver AW, Ganesh A, Cooke SL, Jhujh SS, McNee GS, Hollingworth R, Higgs MR, Natsume T, Khan T, Martos-Moreno GÁ, Chupp S, Mathew CG, Parry D, Simpson MA, Nahavandi N, Yüksel Z, Drasdo M, Kron A, Vogt P, Jonasson A, Seth SA, Gonzaga-Jauregui C, Brigatti KW, Stegmann APA, Kanemaki M, Josifova D, Uchiyama Y, Oh Y, Morimoto A, Osaka H, Ammous Z, Argente J, Matsumoto N, Stumpel CTRM, Taylor AMR, Jackson AP, Bielinsky AK, Mailand N, Le Caignec C, Davis EE, and Stewart GS
- Subjects
- Humans, DNA Repair genetics, Chromosomes metabolism, Genomic Instability, DNA-Binding Proteins metabolism, Ubiquitin-Protein Ligases metabolism, Chromosomal Proteins, Non-Histone metabolism, Cell Cycle Proteins genetics, Cell Cycle Proteins metabolism, Microcephaly genetics
- Abstract
Embryonic development is dictated by tight regulation of DNA replication, cell division and differentiation. Mutations in DNA repair and replication genes disrupt this equilibrium, giving rise to neurodevelopmental disease characterized by microcephaly, short stature and chromosomal breakage. Here, we identify biallelic variants in two components of the RAD18-SLF1/2-SMC5/6 genome stability pathway, SLF2 and SMC5, in 11 patients with microcephaly, short stature, cardiac abnormalities and anemia. Patient-derived cells exhibit a unique chromosomal instability phenotype consisting of segmented and dicentric chromosomes with mosaic variegated hyperploidy. To signify the importance of these segmented chromosomes, we have named this disorder Atelís (meaning - incomplete) Syndrome. Analysis of Atelís Syndrome cells reveals elevated levels of replication stress, partly due to a reduced ability to replicate through G-quadruplex DNA structures, and also loss of sister chromatid cohesion. Together, these data strengthen the functional link between SLF2 and the SMC5/6 complex, highlighting a distinct role for this pathway in maintaining genome stability., (© 2022. The Author(s).)
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- 2022
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45. Vivaxin genes encode highly immunogenic, non-variant antigens on the Trypanosoma vivax cell-surface.
- Author
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Romero-Ramirez A, Casas-Sánchez A, Autheman D, Duffy CW, Brandt C, Clare S, Harcourt K, André MR, de Almeida Castilho Neto KJG, Teixeira MMG, Machado RZ, Coombes J, Flynn RJ, Wright GJ, and Jackson AP
- Subjects
- Animals, Antibody Formation, Antigens, Protozoan genetics, Immunoglobulin G genetics, Mice, Phylogeny, Variant Surface Glycoproteins, Trypanosoma genetics, Trypanosoma vivax genetics, Vaccines
- Abstract
Trypanosoma vivax is a unicellular hemoparasite, and a principal cause of animal African trypanosomiasis (AAT), a vector-borne and potentially fatal livestock disease across sub-Saharan Africa. Previously, we identified diverse T. vivax-specific genes that were predicted to encode cell surface proteins. Here, we examine the immune responses of naturally and experimentally infected hosts to these unique parasite antigens, to identify immunogens that could become vaccine candidates. Immunoprofiling of host serum shows that one particular family (Fam34) elicits a consistent IgG antibody response. This gene family, which we now call Vivaxin, encodes at least 124 transmembrane glycoproteins that display quite distinct expression profiles and patterns of genetic variation. We focused on one gene (viv-β8) that encodes one particularly immunogenic vivaxin protein and which is highly expressed during infections but displays minimal polymorphism across the parasite population. Vaccination of mice with VIVβ8 adjuvanted with Quil-A elicits a strong, balanced immune response and delays parasite proliferation in some animals but, ultimately, it does not prevent disease. Although VIVβ8 is localized across the cell body and flagellar membrane, live immunostaining indicates that VIVβ8 is largely inaccessible to antibody in vivo. However, our phylogenetic analysis shows that vivaxin includes other antigens shown recently to induce immunity against T. vivax. Thus, the introduction of vivaxin represents an important advance in our understanding of the T. vivax cell surface. Besides being a source of proven and promising vaccine antigens, the gene family is clearly an important component of the parasite glycocalyx, with potential to influence host-parasite interactions., Competing Interests: I have read the journal’s policy and the authors of this manuscript have the following competing interests: DA and GJW are named inventors on patents relating to the use of IFX and V31 as animal trypanosomiasis vaccines.
- Published
- 2022
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46. In silico analysis of mutations near S1/S2 cleavage site in SARS-CoV-2 spike protein reveals increased propensity of glycosylation in Omicron strain.
- Author
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Beaudoin CA, Pandurangan AP, Kim SY, Hamaia SW, Huang CL, Blundell TL, Vedithi SC, and Jackson AP
- Subjects
- Glycosylation, Mutation, SARS-CoV-2 genetics, Spike Glycoprotein, Coronavirus genetics
- Abstract
Cleavage of the severe respiratory syndrome coronavirus-2 (SARS-CoV-2) spike protein has been demonstrated to contribute to viral-cell fusion and syncytia formation. Studies have shown that variants of concern (VOC) and variants of interest (VOI) show differing membrane fusion capacity. Mutations near cleavage motifs, such as the S1/S2 and S2' sites, may alter interactions with host proteases and, thus, the potential for fusion. The biochemical basis for the differences in interactions with host proteases for the VOC/VOI spike proteins has not yet been explored. Using sequence and structure-based bioinformatics, mutations near the VOC/VOI spike protein cleavage sites were inspected for their structural effects. All mutations found at the S1/S2 sites were predicted to increase affinity to the furin protease but not TMPRSS2. Mutations at the spike residue P681 in several strains, such P681R in the Delta strain, resulted in the disruption of a proline-directed kinase phosphorylation motif at the S1/S2 site, which may lessen the impact of phosphorylation for these variants. However, the unique N679K mutation in the Omicron strain was found to increase the propensity for O-linked glycosylation at the S1/S2 cleavage site, which may prevent recognition by proteases. Such glycosylation in the Omicron strain may hinder entry at the cell surface and, thus, decrease syncytia formation and induce cell entry through the endocytic pathway as has been shown in previous studies. Further experimental work is needed to confirm the effect of mutations and posttranslational modifications on SARS-CoV-2 spike protein cleavage sites., (© 2022 The Authors. Journal of Medical Virology published by Wiley Periodicals LLC.)
- Published
- 2022
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47. Molecular and epidemiological surveillance of Plasmodium spp. during a mortality event affecting Humboldt penguins ( Spheniscus humboldti ) at a zoo in the UK.
- Author
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González-Olvera M, Hernandez-Colina A, Himmel T, Eckley L, Lopez J, Chantrey J, Baylis M, and Jackson AP
- Abstract
In 2017, a mortality event affected Humboldt penguins at Chester Zoo (UK), which coincided with the diagnosis of avian malaria (AM) in some birds. AM is found worldwide wherever a competent mosquito vector is present, but the disease is particularly severe in penguins and other species that originate from non-endemic regions. To better understand the role of AM and manage its threat to penguin collections, Plasmodium was surveyed through PCR at Chester Zoo in mosquitoes, penguins, and dead free-living wild birds during and around the mortality event. Additional sequences were obtained from penguin fatalities from four other UK zoological collections. All sequences were integrated into phylogenetic analyses to determine parasite species and lineages. In total, 753/6459 positive mosquitoes were recorded (11.7% prevalence), reaching a weekly peak of 30% prevalence in mid-summer. Among penguin fatalities at Chester Zoo, several penguins presented signs and lesions compatible with AM; nevertheless, exoerythrocytic meronts were identified in only one case and Plasmodium spp. was identified in 5/22 birds. Phylogenetic analysis revealed at least five parasite cytb lineages of three Plasmodium species ( P. matutinum, P. relictum and P. vaughani ) circulating in mosquitoes at Chester Zoo; however, infections in free-living wild birds and penguins were only from P. matutinum . Plasmodium matutinum was confirmed as the cause of death of one penguin and was highly suspected to be the cause of death of another three. The lineage LINN1 was associated with 4/5 penguin infections. AM had a key role in the penguin multicausal mortality event. Understanding the risk of AM to penguin collections at Chester Zoo and elsewhere requires long-term surveillance to examine the association between Plasmodium infection and penguin mortality and the variability in parasite virulence. Surveillance of Plasmodium spp. in mosquitoes and local birds provides information about the parasite's transmission cycle locally, and could warn about infection risks to species of interest, which is essential for efficient disease control and prevention., Competing Interests: None., (© 2022 The Authors.)
- Published
- 2022
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48. The breakup of a long-period comet is not a likely match to the Chicxulub impactor.
- Author
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Desch SJ, Jackson AP, Noviello JL, and Anbar AD
- Subjects
- Meteoroids
- Published
- 2022
- Full Text
- View/download PDF
49. Publisher Correction: Signatures of TOP1 transcription-associated mutagenesis in cancer and germline.
- Author
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Reijns MAM, Parry DA, Williams TC, Nadeu F, Hindshaw RL, Rios Szwed DO, Nicholson MD, Carroll P, Boyle S, Royo R, Cornish AJ, Xiang H, Ridout K, Schuh A, Aden K, Palles C, Campo E, Stankovic T, Taylor MS, and Jackson AP
- Published
- 2022
- Full Text
- View/download PDF
50. Proteomic analysis in primary T cells reveals IL-7 alters T cell receptor thresholding via CYTIP/cytohesin/LFA-1 localisation and activation.
- Author
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Queiroz RML, Piper SC, Rees JS, Strickson S, Briend E, Low CP, Ferguson GJ, Lilley KS, Jackson AP, and Finch DK
- Subjects
- Actin Cytoskeleton metabolism, Blood Donors, Cells, Cultured, Humans, Lymphocyte Activation drug effects, Phosphorylation drug effects, Recombinant Proteins pharmacology, Threonine metabolism, Guanine Nucleotide Exchange Factors metabolism, Interleukin-7 pharmacology, Lymphocyte Function-Associated Antigen-1 metabolism, Proteome metabolism, Proteomics methods, Receptors, Antigen, T-Cell metabolism, Signal Transduction drug effects, T-Lymphocytes immunology, Transcription Factors metabolism
- Abstract
The ability of the cellular immune system to discriminate self from foreign antigens depends on the appropriate calibration of the T cell receptor (TCR) signalling threshold. The lymphocyte homeostatic cytokine interleukin 7 (IL-7) is known to affect TCR thresholding, but the molecular mechanism is not fully elucidated. A better understanding of this process is highly relevant in the context of autoimmune disease therapy and cancer immunotherapy. We sought to characterise the early signalling events attributable to IL-7 priming; in particular, the altered phosphorylation of signal transduction proteins and their molecular localisation to the TCR. By integrating high-resolution proximity- phospho-proteomic and imaging approaches using primary T cells, rather than engineered cell lines or an in vitro expanded T cell population, we uncovered transduction events previously not linked to IL-7. We show that IL-7 leads to dephosphorylation of cytohesin interacting protein (CYTIP) at a hitherto undescribed phosphorylation site (pThr280) and alters the co-localisation of cytohesin-1 with the TCR and LFA-1 integrin. These results show that IL-7, acting via CYTIP and cytohesin-1, may impact TCR activation thresholds by enhancing the co-clustering of TCR and LFA-1 integrin., (© 2022 The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
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