7 results on '"Jürg Frey"'
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2. Genomics-informed design of loop-mediated isothermal amplification for detection of phytopathogenicXanthomonas arboricolapv. pruniat the intraspecific level
- Author
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Brion Duffy, Neil Boonham, Joël F. Pothier, Jennifer A. Tomlinson, Jürg Frey, Theo H. M. Smits, and Andreas Bühlmann
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0106 biological sciences ,Comparative genomics ,0303 health sciences ,biology ,Loop-mediated isothermal amplification ,Genomics ,Plant Science ,Xanthomonas arboricola ,Computational biology ,Horticulture ,Subspecies ,biology.organism_classification ,01 natural sciences ,Genome ,Intraspecific competition ,Microbiology ,03 medical and health sciences ,Genetics ,Agronomy and Crop Science ,Pathogen ,030304 developmental biology ,010606 plant biology & botany - Abstract
The objective of this study was to develop a rapid, sensitive detection assay for the quarantine pathogen Xanthomonas arboricola pv. pruni, causal agent of stone fruit bacterial spot, an economically important disease of Prunus spp. Unique targets were identified from X. arboricola pv. pruni genomes using a comparative genomics pipeline of other Xanthomonas species, subspecies and pathovars, and used to identify specific diagnostic markers. Loop-mediated isothermal amplification (LAMP) was then applied to these markers to provide rapid, sensitive and specific detection. The method developed showed unrivalled specificity with the 79 tested strains and, in contrast to previously established techniques, distinguished between phylogenetically close subspecies such as X. arboricola pv. corylina. The sensitivity of this test is comparable to that of a previously reported TaqMan™ assay at 103 CFU mL−1, while the unrivalled speed of LAMP technology enables a positive result to be obtained in
- Published
- 2012
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3. Report on the 42nd joint meeting of the DPG-working group Nematology and the working group 'free living nematodes'
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Matthias Daub, Ulrike Hakl, Beira Hailu Maressa, Heinz-Wilhelm Dehne, Johannes Hallmann, Sebastian Kiewnick, Caroline Eberlein, Holger Heuer, Jan H Moos, Hans M Paulsen, Andreas Westphal, Dieter Sturhan, Stefanie Wolf, Andy Bühlmann, Jürg Frey, and Rasha Nuaima
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Nematology ,medicine.medical_specialty ,Group (periodic table) ,Physical therapy ,medicine ,Plant Science ,Horticulture ,Biology ,Agronomy and Crop Science - Published
- 2014
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4. Molecular characterisation of the national collection of Swiss cherry cultivars
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Jürg Frey, Tulipan Zollinger, David Szalatnay, and Andrea Frei
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Genetic diversity ,business.industry ,Genomics ,Locus (genetics) ,Horticulture ,Biology ,Biotechnology ,Prunus ,Genetic marker ,Genetics ,Microsatellite ,Cultivar ,Allele ,business - Abstract
SummaryThis study aimed to assess the genetic diversity present among Swiss cherry accessions using the microsatellite markers (SSRs) proposed by the Prunus working group of the ECPGR-FN (European Collaborative Programme for Genetic Resources-Fruit Network) for varietal identification. We analysed 567 cherry accessions from nationwide collections of the fruit genetic resources inventory, and from the nuclear stock of Agroscope ACW, an archive of healthy, virus-free fruit varieties. Of the 20 SSRs tested, 14 resulted in polymorphic and useful multiplex mixes covering the entire cherry genome. The numbers of alleles per locus ranged from two to 21, which was generally higher than reported in the literature. Several groups of putative synonyms, with up to 16 accessions, were found, reducing the number of individual genetic profiles to 278. This represents a 49% reduction of the total number of genetically different accessions. Our results may therefore lead to making the maintenace of, and breeding from, Swi...
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- 2010
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5. Listening in/to the Liminal
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Catherine Lamb, Bryan Eubanks, Lucio Capece, Jürg Frey, Laura Steenberge, Mark So, Eileen Myles, Jason Kahn, Manfred Werder, Jakob Ullman, Eric Laska, Maryanne Amacher, Michael Pisaro, Johnny Chang, Dina Khouri, Madison Brookshire, Jordan Topiel Paul, Bill Dietz, Andrew Lafkas, Walter Branchi, Éliane Radigue, Mani Kaul, Peter Ablinger, Catherine Lamb, Bryan Eubanks, Lucio Capece, Jürg Frey, Laura Steenberge, Mark So, Eileen Myles, Jason Kahn, Manfred Werder, Jakob Ullman, Eric Laska, Maryanne Amacher, Michael Pisaro, Johnny Chang, Dina Khouri, Madison Brookshire, Jordan Topiel Paul, Bill Dietz, Andrew Lafkas, Walter Branchi, Éliane Radigue, Mani Kaul, and Peter Ablinger
- Abstract
Since the Autumn of 2012 we have been attempting to connect a variety of musical and conceptual work in which we feel strongly exists in, points towards, or employs an area that could be described as the liminal. We both feel that this is not something so easily defined, does not have to do with a particular kind of work, nor is a particular thing or perceptual understanding. Yet at the same time we feel that in some music or ideas this area becomes quite important- actually vital to the total experience- even if it is not to be directly discussed. For our contribution to Lateral Addition we decided to compile an audio essay of responses from a selection of composers we knew and think are working directly, or indirectly, in this area of the liminal. (In two cases, we included previously written/recorded comments from recently deceased artists who spoke eloquently on the subject). Those who chose to respond, and how they did so, greatly determined the outcome of the piece, which in many ways is very different than what we would have done on our own. We are grateful to the participants who took the time to contribute and their varied responses have opened new tangents of inquiry. Catherine Lamb and Bryan Eubanks, January 2014, https://www.librarystack.org/listening-in-to-the-liminal/?ref=unknown
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- 2014
6. Die Entwicklungsleistungen der Medusenknospen und Medusen vonPodocoryne carnea M. Sars nach Isolation und Dissoziation
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Jürg Frey
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Genetics ,Developmental Biology - Abstract
1. Die normale Entwicklung der Meduse vonPodocoryne carnea M.Sars wird aufgrund morphologischer und anatomischer Kriterien in insgesamt 10 Differenzierungsstadien unterteilt. 2. Medusenknospen, die fruhzeitig vom Blastostyl isoliert werden, sind lebensfahig und vollbringen verschiedene Entwicklungsleistungen, deren Art und Haufigkeit vom Entwicklungsalter der Knospe im Moment der Isolation abhangig sind. 3. Junge Medusenknospen der Stadien 1–4 sind nach Isolation einem Dedifferenzierungsprozes unterworfen, der zu einem sog. „Kugelstadium“ fuhrt. Aus diesem morphogenetisch indifferenten Stadium konnen Stolonen und aus diesen wiederum Nahrpolypen entstehen. Dieser von jungen Medusenknospen ausgehende Strukturwandel kann als Metaplasie bezeichnet werden. 4. Altere, in den Stadien 5–8 isolierte Medusenknospen entwickeln sich in der Regel zu Medusen oder medusenahnlichen Gebilden weiter. Der kritische Zeitpunkt, in welchem die Entwicklungsrichtung der Meduse irreversibel festgelegt wird und von dem aus die Differenzierung der Meduse autonom erfolgen kann, liegt zwischen den Entwicklungsstadien 4 und 5. 5. Zellreaggregate, die durch Dissoziation voll ausdifferenzierter Medusen gewonnen wurden, bildeten in wenigen Fallen Stolonen und stolonenahnliche Gebilde. Dies bedeutet, das wenigstens ein Teil der die Meduse aufbauenden Zellen die Fahigkeit zur funktionellen und strukturellen Metaplasie nicht irreversibel verloren hat. 6. Samtliche im Verlaufe dieser Untersuchungen beobachteten Strukturwandlungen fuhrten uber den als niedrigste Realisationsstufe zu bezeichnenden Zustand des Stolo, aus dem unter gunstigen Voraussetzungen die nachsthoheren Stufen (Frespolypen, Blastostyle) hervorgehen konnen.
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- 1968
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7. [Patterns of differentiation of medusae buds and medusae of podocoryne carnea M. Sars after isolation and dissociation]
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Jürg, Frey
- Abstract
1. The normal development of medusa ofPodocoryne carnea M.SARS is divided into 10 different stages according to morphological and anatomical criteria. 2. Medusa buds are viable and develop different patterns of differentiation when isolated early from the blastostyl. These patterns depend on type and frequency of the bud's age of development at the moment of isolation. 3. After isolation young medusa buds of the stages 1-4 are submitted to a process of dedifferentiation leading to a "Kugelstadium" (two-layered sphere). Out of this morphogenetically indifferent stage stolos can emerge. These often give rise to gasterozooids. This structural change, originating from young medusa buds, may be termed metaplasia. 4. Older medusa buds isolated in the stages 5-8 develop normally into medusae or medusa-like structures. The critical phase when the direction of development of the medusa is irreversibly fixed and out of which the differentiation of the medusa can autonomically emerge, lies between the bud-stages 4 and 5. 5. Aggregates of cells, obtained by dissociation of fully differenciated medusae, in a few cases produced stolos and structures of stolo-like shape. This means that at least part of the medusa cells has not irreversibly lost the ability to functional and structural metaplasia. 6. All the changes of structure, observed in the course of the investigations, led to a stolo to be designated as the most primitive stage of differentiation. Under favourable conditions the next higher stages (gasterozooids, blastostyls) can emerge.
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- 1967
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