104 results on '"Hongmin Qin"'
Search Results
2. Experimental Study on Compatibility of Human Bronchial Epithelial Cells in Collagen–Alginate Bioink for 3D Printing
- Author
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Taieba Tuba Rahman, Nathan Wood, Yeasir Mohammad Akib, Hongmin Qin, and Zhijian Pei
- Subjects
collagen–alginate bioink ,compatibility ,cell viability ,culture well method ,human bronchial epithelial cells ,Technology ,Biology (General) ,QH301-705.5 - Abstract
This paper reports an experimental study on the compatibility of human bronchial epithelial (HBE) cells in a collagen–alginate bioink. The compatibility was assessed using the culture well method with three bioink compositions prepared from a 10% alginate solution and neutralized TeloCol-10 mg/mL collagen stock solution. Cell viability, quantified by (live cell count—dead cell count)/live cell count within the HBE cell-laden hydrogel, was evaluated using the live/dead assay method from Day 0 to Day 6. Experimental results demonstrated that the collagen–alginate 4:1 bioink composition exhibited the highest cell viability on Day 6 (85%), outperforming the collagen–alginate 1:4 bioink composition and the alginate bioink composition, which showed cell viability of 75% and 45%, respectively. Additionally, the live cell count was highest for the collagen–alginate 4:1 bioink composition on Day 0, a trend that persisted through Days 1 to 6, underscoring its superior performance in maintaining cell viability and promoting cell proliferation. These findings show that the compatibility of HBE cells with the collagen–alginate 4:1 bioink composition was higher compared with the other two bioink compositions.
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- 2024
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3. Life table construction for crapemyrtle bark scale (Acanthococcus lagerstroemiae): the effect of different plant nutrient conditions on insect performance
- Author
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Runshi Xie, Bin Wu, Mengmeng Gu, and Hongmin Qin
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Medicine ,Science - Abstract
Abstract Crapemyrtle Bark Scale (Acanthococcus lagerstroemiae; CMBS) is an invasive pest species that primarily infest crapemyrtles (Lagerstroemia spp.) in the United States. Recent reports have revealed the dire threat of CMBS to attack not only crapemrytles but also the U.S. native species with expanded host plants such as American beautyberry (Callicarpa spp.) and Hypericum kalmianum L. (St. Johnswort). A better understanding of plant–insect interaction will provide better and environmental-friendly pest management strategies. In this study, we constructed the first comprehensive life table for CMBS to characterize its biological parameters, including developmental stages, reproductive behavior, and fecundity. The indirect effects of three plant nutrient conditions (water, 0.01MS, and 0.1MS) on CMBS populations were examined using the age-stage, two-sex life table. The demographic analyses revealed that the plant nutrient conditions had significantly altered CMBS development in terms of the intrinsic rate of increase (r), the finite rate of increase (λ), the net reproductive rate (R 0 ), and mean generation time (T). Higher r, λ, and R 0 were recorded under nutrient-deficient conditions (water), while CMBS reared on plants with healthier growing conditions (0.1MS) had the most prolonged T. Overall, CMBS shows better insect performance when reared on plants under nutrient-deficient conditions.
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- 2022
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4. Evaluating Beautyberry and Fig Species as Potential Hosts of Invasive Crapemyrtle Bark Scale in the United States
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Bin Wu, Runshi Xie, Gary W. Knox, Hongmin Qin, and Mengmeng Gu
- Subjects
exotic insect ,green industry ,host range ,host suitability ,Plant culture ,SB1-1110 - Abstract
Crapemyrtle bark scale [CMBS (Acanthococcus lagerstroemiae)], a newly emerged pest in the United States, has spread to 16 U.S. states and unexpectedly spread on a native species american beautyberry (Callicarpa americana) in Texas and Louisiana in 2016 since it was initially reported on crapemyrtles (Lagerstroemia sp.) in Texas in 2004. The infestation of CMBS negatively impacted the flowering of crapemyrtles. We observed the infestation on the two most commercially available edible fig (Ficus carica) cultivars Beer’s Black and Chicago Hardy in a preliminary trial in 2018. To help estimate CMBS potential in aggravating risks to the ecosystem stability and the green industry, we conducted a host range and suitability test using ‘Bok Tower’ american beautyberry as a positive control with other eight beautyberry (Callicarpa) species [mexican beautyberry (C. acuminata), ‘Profusion’ bodinieri beautyberry (C. bodinieri), ‘Issai’ purple beautyberry (C. dichotoma), japanese beautyberry (C. japonica var. luxurians), ‘Alba’ white-fruited asian beautyberry (C. longissima), taiwan beautyberry (C. pilosissima), luanta beautyberry (C. randaiensis), and willow-leaf beautyberry (C. salicifolia)] and three fig (Ficus) species [creeping fig (F. pumila), roxburgh fig (F. auriculata), and waipahu fig (F. tikoua)] over 25 weeks. All the tested beautyberry species and waipahu fig sustainably supported the development and reproduction of nymphal CMBS and were confirmed as CMBS hosts. Furthermore, comparing with the control, mexican beautyberry, ‘Profusion’ bodinieri beautyberry, taiwan beautyberry, and willow-leaf beautyberry were significantly less suitable, while ‘Issai’ purple beautyberry, japanese beautyberry, ‘Alba’ white-fruited asian beautyberry, and luanta beautyberry were as suitable as ‘Bok Tower’ american beautyberry. Thus, when using beautyberries in landscapes, their different potential to host CMBS should be considered to minimize spreading CMBS through the native ecosystems.
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- 2021
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5. Confirmation of New Crapemyrtle Bark Scale (Acanthococcus lagerstroemiae) Hosts (Spiraea and Callicarpa) through DNA Barcoding
- Author
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Bin Wu, Mengmeng Gu, Stacey R. Jones, James Robbins, Allen L. Szalanski, Hongmin Qin, and Runshi Xie
- Subjects
alternative host ,crapemyrtle bark scale ,eriococcus ,exotic scale insect ,host range ,phylogeny ,species identification ,Plant culture ,SB1-1110 - Abstract
Crapemyrtle bark scale (CMBS; Acanthococcus lagerstroemiae Kuwana) is an invasive insect that was first discovered in the United States in 2004. The polyphagous feeding habit of CMBS has allowed it to infest a wide range of plant species beyond its primary host, Lagerstroemia. Using molecular approaches, we studied the genetic relationships between CMBS specimens and their hosts from different geographic locations. Naturally occurring CMBS infestations were confirmed on American beautyberry (Callicarpa americana L.), a native plant species in the United States, and spirea (Spiraea L.). The new infestation of CMBS found on Spiraea raises the alarm that other economically important crops in the Amygdaloideae subfamily (subfamily under Rosaceae) might be susceptible to CMBS attacks.
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- 2021
- Full Text
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6. O-GlcNAcylation Regulates Primary Ciliary Length by Promoting Microtubule Disassembly
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Jie L. Tian and Hongmin Qin
- Subjects
Science - Abstract
Summary: The sensory organelle cilium is involved in sensing and transducing important signaling cascades in almost all cells of our body. These ciliary-mediated pathways affect cellular homeostasis and metabolisms profoundly. However, it is almost completely unknown whether the cellular metabolic state affects the assembly of cilia. This study is to investigate how O-linked β-N-acetylglucosamine (O-GlcNAc), a sensor of cellular nutrients, regulates the cilia length. Pharmacologic or genetic inhibition of O-GlcNAcylation led to longer cilia, and vice versa. Further biochemical assays revealed that both α-tubulin and HDAC6 (histone deacetylase 6) were O-GlcNAcylated in vivo. In vitro enzymatic assays showed that O-GlcNAcylation of either tubulin or HDAC6 promoted microtubule disassembly, which likely in turn caused ciliary shortening. Taken together, these results uncovered a negative regulatory role of O-GlcNAc in modulating the ciliary microtubule assembly. The cross talk between O-GlcNAc and cilium is likely critical for fine-tuning the cellular response to nutrients. : Biological Sciences; Molecular Biology; Cell Biology; Functional Aspects of Cell Biology Subject Areas: Biological Sciences, Molecular Biology, Cell Biology, Functional Aspects of Cell Biology
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- 2019
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7. Real-Time Feeding Behavior Monitoring by Electrical Penetration Graph Rapidly Reveals Host Plant Susceptibility to Crapemyrtle Bark Scale (Hemiptera: Eriococcidae)
- Author
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Bin Wu, Elizabeth Chun, Runshi Xie, Gary W. Knox, Mengmeng Gu, and Hongmin Qin
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Lagerstroemia ,crapemyrtle ,Acanthococcus lagerstroemiae ,crapemyrtle bark scale ,CMBS ,electrical penetration graph ,Science - Abstract
Host range confirmation of invasive hemipterans relies on the evaluation of plant susceptibility though greenhouse or field trials, which are inefficient and time-consuming. When the green industry faces the fast-spreading threat of invasive pests such as crapemyrtle bark scale (Acanthococcus lagerstroemiae), it is imperative to timely identify potential host plants and evaluate plant resistance/susceptibility to pest infestation. In this study, we developed an alternative technology to complement the conventional host confirmation methods. We used electrical penetration graph (EPG) based technology to monitor the A. lagerstroemiae stylet-tip position when it was probing in different plant tissues in real-time. The frequency and relative amplitude of insect EPG waveforms were extracted by an R programming-based software written to generate eleven EPG parameters for comparative analysis between plant species. The results demonstrated that the occurrences of phloem phase and xylem phase offered conclusive evidence for host plant evaluation. Furthermore, parameters including the percentage of insects capable of accessing phloem tissue, time duration spent on initiating phloem phase and ingesting phloem sap, provided insight into why host plant susceptibility differs among similar plant species. In summary, this study developed a novel real-time diagnostic tool for quick A. lagerstroemiae host confirmation, which laid the essential foundation for effective pest management.
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- 2022
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8. Green Bioprinting with Layer-by-Layer Photo-Crosslinking: A Designed Experimental Investigation on Shape Fidelity and Cell Viability of Printed Constructs
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Ketan Thakare, Laura Jerpseth, Zhijian Pei, and Hongmin Qin
- Subjects
bioprinting ,photo-crosslinking ,additive manufacturing ,Production capacity. Manufacturing capacity ,T58.7-58.8 - Abstract
Process variables of bioprinting (including extrusion pressure, nozzle size, and bioink composition) can affect the shape fidelity and cell viability of printed constructs. Reported studies show that increasing extrusion pressure or decreasing nozzle size would decrease cell viability in printed constructs. However, a smaller nozzle size is often necessary for printing constructs of higher shape fidelity, and a higher extrusion pressure is usually needed to extrude bioink through nozzles with a smaller diameter. Because values of printing process variables that increase shape fidelity can be detrimental to cell viability, the optimum combination of variables regarding both shape fidelity and cell viability must be determined for specific bioink compositions. This paper reports a designed experimental investigation (full factorial design with three variables and two levels) on bioprinting by applying layer-by-layer photo-crosslinking and using the alginate-methylcellulose-GelMA bioink containing algae cells. The study investigates both the main effects and interaction effects of extrusion pressure, nozzle size, and bioink composition on the shape fidelity and cell viability of printed constructs. Results show that, as extrusion pressure changed from its low level to its high level, shape fidelity and cell viability decreased. As nozzle size changed from its low level to its high level, shape fidelity decreased while cell viability increased. As bioink composition changed from its low level (with more methylcellulose content in the bioink) to its high level (with less methylcellulose content in the bioink), shape fidelity and cell viability increased.
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- 2022
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9. Editorial: Dissecting the Intraflagellar Transport System in Physiology and Disease: Cilia-Related and -Unrelated Roles
- Author
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Francesca Finetti, Junmin Pan, Hongmin Qin, and Benedicte Delaval
- Subjects
intraflagellar transport (IFT) ,IFT-A and IFT-B complexes ,IFT interactors ,IFT- related diseases ,protein trafficking ,Biology (General) ,QH301-705.5 - Published
- 2020
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10. Bioprinting of Organ-on-Chip Systems: A Literature Review from a Manufacturing Perspective
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Ketan Thakare, Laura Jerpseth, Zhijian Pei, Alaa Elwany, Francis Quek, and Hongmin Qin
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additive manufacturing ,bioprinting ,organ-on-chip ,Production capacity. Manufacturing capacity ,T58.7-58.8 - Abstract
This review discusses the reported studies investigating the use of bioprinting to develop functional organ-on-chip systems from a manufacturing perspective. These organ-on-chip systems model the liver, kidney, heart, lung, gut, bone, vessel, and tumors to demonstrate the viability of bioprinted organ-on-chip systems for disease modeling and drug screening. In addition, the paper highlights the challenges involved in using bioprinting techniques for organ-on-chip system fabrications and suggests future research directions. Based on the reviewed studies, it is concluded that bioprinting can be applied for the automated and assembly-free fabrication of organ-on chip systems. These bioprinted organ-on-chip systems can help in the modeling of several different diseases and can thereby expedite drug discovery by providing an efficient platform for drug screening in the preclinical phase of drug development processes.
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- 2021
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11. Host Suitability for Crapemyrtle Bark Scale (Acanthococcus lagerstroemiae) Differed Significantly among Crapemyrtle Species
- Author
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Bin Wu, Runshi Xie, Gary W. Knox, Hongmin Qin, and Mengmeng Gu
- Subjects
crapemyrtle bark scale ,host range ,host suitability ,susceptibility ,future breeding programs ,Lagerstroemia spp. ,Science - Abstract
Crapemyrtle bark scale (CMBS, Acanthococcus lagerstroemiae), an invasive polyphagous sap-sucking hemipteran, has spread across 14 states of the United States since 2004. The infestation of CMBS has negatively impacted the flowering of ornamental plants and even the fruiting of some crops. Host identification is critical for determining potential risks in ecosystems and industries and helps develop strategic management. A host confirmation test was performed over 25 weeks using six Lagerstroemia species (L. caudata, L. fauriei ‘Kiowa’, L. indica ‘Dynamite’, L. limii, L. speciosa, and L. subcostata) and California loosestrife (Lythrum californicum). The 25-week observations confirmed all tested plants as the hosts. The repeated measures of analysis of variance (ANOVA; Tukey’s HSD, α = 0.05) indicated that the average number of CMBS females differed significantly between L. limii and L. speciosa. The highest number of the females observed on L. limii was 576 ± 25 (mean ± SE) at 17 weeks after inoculation (WAI), while the highest number was 57 ± 15 on L. speciosa at 19 WAI. In addition, L. subcostata and L. speciosa had significantly high and low numbers of males, respectively, among the Lagerstroemia species. Our results suggest that L. speciosa could be incorporated in developing new cultivars with low CMBS suitability.
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- 2020
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12. Feeding Preference of Crapemyrtle Bark Scale (Acanthococcus lagerstroemiae) on Different Species
- Author
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Runshi Xie, Bin Wu, Haijie Dou, Cuiyu Liu, Gary W. Knox, Hongmin Qin, and Mengmeng Gu
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Lagerstroemia ,host range ,pomegranates ,apple ,scale insect ,exotic pest ,Science - Abstract
Crapemyrtle bark scale (CMBS; Acanthococcus lagerstroemiae) is an exotic pest species that causes aesthetic and economic damage to crapemyrtles and poses potential threats to other horticultural crops in the United States. Although previous studies reported the infestation of CMBS on several alternative hosts across multiple families in Asia, its potential threats to other documented alternative hosts remain elusive and yet to be confirmed. In this study, feeding preference studies of CMBS were conducted on forty-nine plant species and cultivars in 2016 and 2019, in order to gain insight into the expansion of CMBS distribution in the United States, as well as other regions of the world. The infestations of CMBS were confirmed on apple (Malus domestica), Chaenomeles speciosa, Disopyros rhombifolia, Heimia salicifolia, Lagerstroemia ‘Spiced Plum’, M. angustifolia, and twelve out of thirty-five pomegranate cultivars. However, the levels of CMBS infestation on these test plant hosts in this study is very low compared to Lagerstroemia, and may not cause significant damage. No sign of CMBS infestation was observed on Rubus ‘Arapaho’, R. ‘Navaho’, R. idaeus ‘Dorman Red’, R. fruticosus, B. microphylla var. koreana × B. sempervirens, B. harlandii, or D. virginiana.
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- 2020
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13. H+- and Na+- elicited rapid changes of the microtubule cytoskeleton in the biflagellated green alga Chlamydomonas
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Yi Liu, Mike Visetsouk, Michelle Mynlieff, Hongmin Qin, Karl F Lechtreck, and Pinfen Yang
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Chlamydomonas ,EB1 ,microtubule ,salt stress ,intracellular acidification ,ocean acidification ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Although microtubules are known for dynamic instability, the dynamicity is considered to be tightly controlled to support a variety of cellular processes. Yet diverse evidence suggests that this is not applicable to Chlamydomonas, a biflagellate fresh water green alga, but intense autofluorescence from photosynthesis pigments has hindered the investigation. By expressing a bright fluorescent reporter protein at the endogenous level, we demonstrate in real time discreet sweeping changes in algal microtubules elicited by rises of intracellular H+ and Na+. These results from this model organism with characteristics of animal and plant cells provide novel explanations regarding how pH may drive cellular processes; how plants may respond to, and perhaps sense stresses; and how organisms with a similar sensitive cytoskeleton may be susceptible to environmental changes.
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- 2017
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14. Correction: TTC26/DYF13 is an intraflagellar transport protein required for transport of motility-related proteins into flagella
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Hiroaki Ishikawa, Takahiro Ide, Toshiki Yagi, Xue Jiang, Masafumi Hirono, Hiroyuki Sasaki, Haruaki Yanagisawa, Kimberly A Wemmer, Didier YR Stainier, Hongmin Qin, Ritsu Kamiya, and Wallace F Marshall
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Medicine ,Science ,Biology (General) ,QH301-705.5 - Published
- 2014
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15. TTC26/DYF13 is an intraflagellar transport protein required for transport of motility-related proteins into flagella
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Hiroaki Ishikawa, Takahiro Ide, Toshiki Yagi, Xue Jiang, Masafumi Hirono, Hiroyuki Sasaki, Haruaki Yanagisawa, Kimberly A Wemmer, Didier YR Stainier, Hongmin Qin, Ritsu Kamiya, and Wallace F Marshall
- Subjects
Chlamydomonas ,flagella ,dynein ,axoneme ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Cilia/flagella are assembled and maintained by the process of intraflagellar transport (IFT), a highly conserved mechanism involving more than 20 IFT proteins. However, the functions of individual IFT proteins are mostly unclear. To help address this issue, we focused on a putative IFT protein TTC26/DYF13. Using live imaging and biochemical approaches we show that TTC26/DYF13 is an IFT complex B protein in mammalian cells and Chlamydomonas reinhardtii. Knockdown of TTC26/DYF13 in zebrafish embryos or mutation of TTC26/DYF13 in C. reinhardtii, produced short cilia with abnormal motility. Surprisingly, IFT particle assembly and speed were normal in dyf13 mutant flagella, unlike in other IFT complex B mutants. Proteomic and biochemical analyses indicated a particular set of proteins involved in motility was specifically depleted in the dyf13 mutant. These results support the concept that different IFT proteins are responsible for different cargo subsets, providing a possible explanation for the complexity of the IFT machinery.
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- 2014
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16. Dissecting the sequential assembly and localization of intraflagellar transport particle complex B in Chlamydomonas.
- Author
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Elizabeth A Richey and Hongmin Qin
- Subjects
Medicine ,Science - Abstract
Intraflagellar transport (IFT), the key mechanism for ciliogenesis, involves large protein particles moving bi-directionally along the entire ciliary length. IFT particles contain two large protein complexes, A and B, which are constructed with proteins in a core and several peripheral proteins. Prior studies have shown that in Chlamydomonas reinhardtii, IFT46, IFT52, and IFT88 directly interact with each other and are in a subcomplex of the IFT B core. However, ift46, bld1, and ift88 mutants differ in phenotype as ift46 mutants are able to form short flagella, while the other two lack flagella completely. In this study, we investigated the functional differences of these individual IFT proteins contributing to complex B assembly, stability, and basal body localization. We found that complex B is completely disrupted in bld1 mutant, indicating an essential role of IFT52 for complex B core assembly. Ift46 mutant cells are capable of assembling a relatively intact complex B, but such complex is highly unstable and prone to degradation. In contrast, in ift88 mutant cells the complex B core still assembles and remains stable, but the peripheral proteins no longer attach to the B core. Moreover, in ift88 mutant cells, while complex A and the anterograde IFT motor FLA10 are localized normally to the transition fibers, complex B proteins instead are accumulated at the proximal ends of the basal bodies. In addition, in bld2 mutant, the IFT complex B proteins still localize to the proximal ends of defective centrioles which completely lack transition fibers. Taken together, these results revealed a step-wise assembly process for complex B, and showed that the complex first localizes to the proximal end of the centrioles and then translocates onto the transition fibers via an IFT88-dependent mechanism.
- Published
- 2012
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17. Intraflagellar transport (IFT) protein IFT25 is a phosphoprotein component of IFT complex B and physically interacts with IFT27 in Chlamydomonas.
- Author
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Zhaohui Wang, Zhen-Chuan Fan, Shana M Williamson, and Hongmin Qin
- Subjects
Medicine ,Science - Abstract
BACKGROUND: Intraflagellar transport (IFT) is the bidirectional movement of IFT particles between the cell body and the distal tip of a flagellum. Organized into complexes A and B, IFT particles are composed of at least 18 proteins. The function of IFT proteins in flagellar assembly has been extensively investigated. However, much less is known about the molecular mechanism of how IFT is regulated. METHODOLOGY/PRINCIPAL FINDINGS: We herein report the identification of a novel IFT particle protein, IFT25, in Chlamydomonas. Dephosphorylation assay revealed that IFT25 is a phosphoprotein. Biochemical analysis of temperature sensitive IFT mutants indicated that IFT25 is an IFT complex B subunit. In vitro binding assay confirmed that IFT25 binds to IFT27, a Rab-like small GTPase component of the IFT complex B. Immunofluorescence staining showed that IFT25 has a punctuate flagellar distribution as expected for an IFT protein, but displays a unique distribution pattern at the flagellar base. IFT25 co-localizes with IFT27 at the distal-most portion of basal bodies, probably the transition zones, and concentrates in the basal body region by partially overlapping with other IFT complex B subunits, such as IFT46. Sucrose density gradient centrifugation analysis demonstrated that, in flagella, the majority of IFT27 and IFT25 including both phosphorylated and non-phosphorylated forms are cosedimented with other complex B subunits in the 16S fractions. In contrast, in cell body, only a fraction of IFT25 and IFT27 is integrated into the preassembled complex B, and IFT25 detected in complex B is preferentially phosphorylated. CONCLUSION/SIGNIFICANCE: IFT25 is a phosphoprotein component of IFT particle complex B. IFT25 directly interacts with IFT27, and these two proteins likely form a subcomplex in vivo. We postulate that the association and disassociation between the subcomplex of IFT25 and IFT27 and complex B might be involved in the regulation of IFT.
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- 2009
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18. Applying In Situ Ionic Crosslinking in Bioprinting Using Algae Cells.
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Rahman, Taieba Tuba, Wood, Nathan, Rahman, Al Mazedur, Zhijian Pei, and Hongmin Qin
- Published
- 2024
- Full Text
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19. Biological Parameters of Crapemyrtle Bark Scale (Acanthococcus lagerstroemiae) Differ When Reared on Different Crapemyrtle Hosts
- Author
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Runshi Xie, Bin Wu, Mengmeng Gu, and Hongmin Qin
- Subjects
Horticulture - Abstract
Crapemyrtle bark scale (CMBS; Acanthococcus lagerstroemiae Kuwana), a fast-spreading invasive insect, has been causing damage to popular landscape plants in at least 17 states in the United States since 2004. This invasive insect has a list of documented plant hosts in ∼23 genera, which includes its primary hosts, crapemyrtles (Lagerstroemia spp.), as well as other important plant species, such as pomegranates, apple, and the native plant American beautyberry. Previous studies have shown CMBS causes different levels of feeding damage among its plant hosts, while the underlining plant defense mechanisms toward CMBS attacks remain elusive. A better understanding of plant–CMBS interactions and how CMBS performs under different plants (e.g., a susceptible vs. a resistant host) can provide valuable guidance for integrated pest management. Therefore, in this study, we conducted the age-stage, two-sex table study analysis to evaluate the biological parameters of CMBS on different species or cultivars of crapemyrtle under laboratory conditions (25 °C and 250 μmol·m−2·s−1 light with a photoperiod of 12 hours:12 hours (light:dark). Crapemyrtle bark scale development was found to be greatly influenced by the hosts. This study aims to provide important biological and ecological data on CMBS using a comprehensive life table study to gain a thorough understanding of its development, survival, and fecundity on different crapemyrtle species or cultivars.
- Published
- 2023
20. Biosynthesis of Linear Protein Nanoarrays Using the Flagellar Axoneme
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Hongmin Qin, Wallace F. Marshall, Jie L. Tian, Hiroaki Ishikawa, and Jefer E. Yu
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Axoneme ,1.1 Normal biological development and functioning ,Substrate channeling ,Biomedical Engineering ,Bioengineering ,Biochemistry, Genetics and Molecular Biology (miscellaneous) ,Article ,Medicinal and Biomolecular Chemistry ,Protein structure ,Underpinning research ,Protein purification ,Nanotechnology ,bionanotechnology ,protein expression system ,Chemistry ,Vesicle ,Substrate (chemistry) ,General Medicine ,green algae ,Membrane ,Capsid ,Flagella ,Biophysics ,nanoarrays ,nanoparticles ,Generic health relevance ,Biochemistry and Cell Biology ,Chlamydomonas reinhardtii ,Biotechnology - Abstract
Applications in biotechnology and synthetic biology often make use of soluble proteins, but there are many potential advantages to anchoring enzymes to a stable substrate, including stability and the possibility for substrate channeling. To avoid the necessity of protein purification and chemical immobilization, there has been growing interest in bio-assembly of protein-containing nanoparticles, exploiting the self-assembly of viral capsid proteins or other proteins that form polyhedral structures. But these nanoparticle are limited in size which constrains the packaging and the accessibility of the proteins. The axoneme, the insoluble protein core of the eukaryotic flagellum or cilium, is a highly ordered protein structure that can be several microns in length, orders of magnitude larger than other types of nanoparticles. We show that when proteins of interest are fused to specific axonemal proteins and expressed in living cells, they become incorporated into linear arrays which have the advantages of high protein loading capacity, high stability, and single-step purification with retention of biomass. The arrays can be isolated as membrane enclosed vesicle or as exposed protein arrays. The approach is demonstrated for both fluorescent proteins and enzymes, and in the latter case it is found that incorporation into axoneme arrays provides increased stability for the enzyme.
- Published
- 2022
21. Evaluating Beautyberry and Fig Species as Potential Hosts of Invasive Crapemyrtle Bark Scale in the United States
- Author
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Bin Wu, Runshi Xie, Gary W. Knox, Hongmin Qin, and Mengmeng Gu
- Subjects
host suitability ,host range ,Plant culture ,exotic insect ,Horticulture ,green industry ,SB1-1110 - Abstract
Crapemyrtle bark scale [CMBS (Acanthococcus lagerstroemiae)], a newly emerged pest in the United States, has spread to 16 U.S. states and unexpectedly spread on a native species american beautyberry (Callicarpa americana) in Texas and Louisiana in 2016 since it was initially reported on crapemyrtles (Lagerstroemia sp.) in Texas in 2004. The infestation of CMBS negatively impacted the flowering of crapemyrtles. We observed the infestation on the two most commercially available edible fig (Ficus carica) cultivars Beer’s Black and Chicago Hardy in a preliminary trial in 2018. To help estimate CMBS potential in aggravating risks to the ecosystem stability and the green industry, we conducted a host range and suitability test using ‘Bok Tower’ american beautyberry as a positive control with other eight beautyberry (Callicarpa) species [mexican beautyberry (C. acuminata), ‘Profusion’ bodinieri beautyberry (C. bodinieri), ‘Issai’ purple beautyberry (C. dichotoma), japanese beautyberry (C. japonica var. luxurians), ‘Alba’ white-fruited asian beautyberry (C. longissima), taiwan beautyberry (C. pilosissima), luanta beautyberry (C. randaiensis), and willow-leaf beautyberry (C. salicifolia)] and three fig (Ficus) species [creeping fig (F. pumila), roxburgh fig (F. auriculata), and waipahu fig (F. tikoua)] over 25 weeks. All the tested beautyberry species and waipahu fig sustainably supported the development and reproduction of nymphal CMBS and were confirmed as CMBS hosts. Furthermore, comparing with the control, mexican beautyberry, ‘Profusion’ bodinieri beautyberry, taiwan beautyberry, and willow-leaf beautyberry were significantly less suitable, while ‘Issai’ purple beautyberry, japanese beautyberry, ‘Alba’ white-fruited asian beautyberry, and luanta beautyberry were as suitable as ‘Bok Tower’ american beautyberry. Thus, when using beautyberries in landscapes, their different potential to host CMBS should be considered to minimize spreading CMBS through the native ecosystems.
- Published
- 2022
22. Green lacewing Chrysoperla rufilabris (Neuroptera: Chrysopidae) is a potential biological agent for crapemyrtle bark scale (Hemiptera: Eriococcidae) pest management
- Author
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Bin Wu, Runshi Xie, Mengmeng Gu, and Hongmin Qin
- Published
- 2022
23. Confirmation of New Crapemyrtle Bark Scale (Acanthococcus lagerstroemiae) Hosts (Spiraea and Callicarpa) through DNA Barcoding
- Author
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Hongmin Qin, Runshi Xie, Allen L. Szalanski, Mengmeng Gu, Stacey R. Jones, James M. Robbins, and Bin Wu
- Subjects
biology ,fungi ,species identification ,host range ,Plant culture ,Callicarpa ,Horticulture ,phylogeny ,biology.organism_classification ,DNA barcoding ,SB1-1110 ,Spiraea ,crapemyrtle bark scale ,Acanthococcus ,Botany ,exotic scale insect ,eriococcus ,alternative host - Abstract
Crapemyrtle bark scale (CMBS; Acanthococcus lagerstroemiae Kuwana) is an invasive insect that was first discovered in the United States in 2004. The polyphagous feeding habit of CMBS has allowed it to infest a wide range of plant species beyond its primary host, Lagerstroemia. Using molecular approaches, we studied the genetic relationships between CMBS specimens and their hosts from different geographic locations. Naturally occurring CMBS infestations were confirmed on American beautyberry (Callicarpa americana L.), a native plant species in the United States, and spirea (Spiraea L.). The new infestation of CMBS found on Spiraea raises the alarm that other economically important crops in the Amygdaloideae subfamily (subfamily under Rosaceae) might be susceptible to CMBS attacks.
- Published
- 2021
24. Green Lacewing Chrysoperla rufilabris (Neuroptera: Chrysopidae) is a potential biological agent for controlling crapemyrtle bark scale (Hemiptera: Eriococcidae)
- Author
-
Bin Wu, Runshi Xie, Mengmeng Gu, and Hongmin Qin
- Abstract
Crapemyrtle bark scale (CMBS; Acanthococcus lagerstroemiae), an invasive sap-sucking hemipteran, has spread across 16 U.S. states. Infestation of CMBS negatively impacts the flowering of crapemyrtles and reduces the aesthetic quality of ornamental plants. The widespread use of soil-applied neonicotinoid insecticides to repress the CMBS infestation could threaten important beneficial insects; therefore, using natural enemies to control CMBS is greatly needed. This study evaluated larval green lacewing (Chrysoperla rufilabris) as a biocontrol agent of CMBS. Predatory behavior of the larval C. rufilabris upon CMBS was documented under a stereomicroscope using infested crapemyrtle samples collected from different locations in College Station. Predation potential of C. rufilabris upon CMBS eggs and foraging performance using Y-maze assay were both investigated in laboratory conditions. Results confirmed that larval C. rufilabris preyed on CMBS nymphs, eggs, and adult females. The evaluation of predation potential results showed that the number of CMBS eggs consumed in 24 hours by 3rd instar C. rufilabris (176.4 ±6.9) was significantly higher than by 2nd instar (151.5±6.6) and by 1st instar (11.8±1.3). The foraging performance results showed that larval C. rufilabris could target CMBS under dark, indicating that some cues associated with olfactory response were likely involved when preying on CMBS. This study is the first report that validated C. rufilabris as a natural predator of CMBS and its potential as a biological agent to control CMBS. Future investigation about the olfactory response of larval C. rufilabris to CMBS would benefit the development of environmental-friendly strategies to control CMBS spread.
- Published
- 2022
25. Applying Layer-by-Layer Photo-Crosslinking in Green Bioprinting: Shape Fidelity and Cell Viability of Printed Hydrogel Constructs Containing Algae Cells
- Author
-
Ketan Thakare, Laura Jerpseth, Zhijian Pei, and Hongmin Qin
- Subjects
Control and Systems Engineering ,Mechanical Engineering ,Industrial and Manufacturing Engineering ,Computer Science Applications - Abstract
Three-dimensional printing of hydrogel constructs containing algae cells, also known as green bioprinting, has many potential applications. Its feasibility has been demonstrated for removing metal contaminants in water and tissue engineering. However, in reported studies on green bioprinting so far, shape fidelity was either not investigated or poor. This paper reports a study to apply layer-by-layer photo-crosslinking in extrusion-based 3D printing of constructs using gelatin methacryloyl (GelMA) bioink containing Chlamydomonas reinhardtii algae cells. Shape fidelity and cell viability are compared between constructs printed by applying layer-by-layer photo-crosslinking and those printed by applying once-post-printing photo-crosslinking. Comparisons of shape fidelity are also made with alginate-methylcellulose constructs printed by applying ionic-crosslinking. Results show that GelMA constructs printed by applying layer-by-layer photo-crosslinking have the highest shape fidelity among all printed constructs, and about three-quarters of the algae cells in all printed GelMA constructs are alive four days post-printing. There are no significant differences in cell viability between the GelMA constructs printed by applying layer-by-layer photo-crosslinking and the GelMA constructs printed by applying once-post-printing photo-crosslinking.
- Published
- 2022
26. 3D printing of microalgae-enriched cookie dough: determining feasible regions of process parameters for continuous extrusion
- Author
-
Taieba Tuba Rahman, Al Mazedur Rahman, Zhijian Pei, Ketan Thakare, Hongmin Qin, and Aleena Khan
- Abstract
Microalgae can be part of the solution to the global food crisis, as they have high nutritional values. Recently, 3D printing of microalgae-enriched snacks has been reported with the capability to customize nutritional profiles, shapes, and textures of the snacks. Because the process parameters of extrusion-based 3D printing affect the printability of cookie dough, it is important to know the levels of process parameters leading to continuous extrusion. This study investigated feasible regions of printing process parameters for continuous extrusion of microalgae (Arthrospira Platensis) enriched cookie dough. The process parameters studied were nozzle diameter, printing speed, and air pressure. The feasible regions were determined by visual inspections of printed strands. The results show that, for smaller nozzle diameters and higher printing speeds, higher air pressures are required to ensure continuous extrusion. The identified feasible regions from this study would be helpful when deciding the appropriate nozzle diameter, printing speed, and air pressure to print microalgae-enriched cookie dough and other materials with similar rheological properties in extrusion-based 3D printing.
- Published
- 2023
27. Bioprinting of Organ-on-Chip Systems: A Literature Review from a Manufacturing Perspective
- Author
-
Zhijian Pei, Hongmin Qin, Alaa Elwany, Laura Jerpseth, Francis Quek, and Ketan Thakare
- Subjects
Drug discovery ,Computer science ,Production capacity. Manufacturing capacity ,Mechanical Engineering ,Perspective (graphical) ,Industrial and Manufacturing Engineering ,T58.7-58.8 ,Risk analysis (engineering) ,Drug development ,Preclinical phase ,Mechanics of Materials ,organ-on-chip ,additive manufacturing ,bioprinting - Abstract
This review discusses the reported studies investigating the use of bioprinting to develop functional organ-on-chip systems from a manufacturing perspective. These organ-on-chip systems model the liver, kidney, heart, lung, gut, bone, vessel, and tumors to demonstrate the viability of bioprinted organ-on-chip systems for disease modeling and drug screening. In addition, the paper highlights the challenges involved in using bioprinting techniques for organ-on-chip system fabrications and suggests future research directions. Based on the reviewed studies, it is concluded that bioprinting can be applied for the automated and assembly-free fabrication of organ-on chip systems. These bioprinted organ-on-chip systems can help in the modeling of several different diseases and can thereby expedite drug discovery by providing an efficient platform for drug screening in the preclinical phase of drug development processes.
- Published
- 2021
28. O-GlcNAcylation Regulates Primary Ciliary Length by Promoting Microtubule Disassembly
- Author
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Hongmin Qin and Jie Tian
- Subjects
0301 basic medicine ,Microtubule disassembly ,Cellular homeostasis ,02 engineering and technology ,Article ,Enzymatic Assays ,O glcnacylation ,03 medical and health sciences ,Organelle ,lcsh:Science ,Molecular Biology ,Functional Aspects of Cell Biology ,Multidisciplinary ,biology ,Chemistry ,Cilium ,Cell Biology ,Biological Sciences ,HDAC6 ,021001 nanoscience & nanotechnology ,Cell biology ,030104 developmental biology ,Tubulin ,biology.protein ,lcsh:Q ,0210 nano-technology - Abstract
Summary The sensory organelle cilium is involved in sensing and transducing important signaling cascades in almost all cells of our body. These ciliary-mediated pathways affect cellular homeostasis and metabolisms profoundly. However, it is almost completely unknown whether the cellular metabolic state affects the assembly of cilia. This study is to investigate how O-linked β-N-acetylglucosamine (O-GlcNAc), a sensor of cellular nutrients, regulates the cilia length. Pharmacologic or genetic inhibition of O-GlcNAcylation led to longer cilia, and vice versa. Further biochemical assays revealed that both α-tubulin and HDAC6 (histone deacetylase 6) were O-GlcNAcylated in vivo. In vitro enzymatic assays showed that O-GlcNAcylation of either tubulin or HDAC6 promoted microtubule disassembly, which likely in turn caused ciliary shortening. Taken together, these results uncovered a negative regulatory role of O-GlcNAc in modulating the ciliary microtubule assembly. The cross talk between O-GlcNAc and cilium is likely critical for fine-tuning the cellular response to nutrients., Graphical Abstract, Highlights • Cellular O-GlcNAc level inversely regulates ciliary length • Attenuated O-GlcNAc level increases the percentage of ciliated cells in hTERT-RPE1 • O-GlcNAcylation of α-tubulin promotes ciliary axoneme disassembly • O-GlcNAcylation of HDAC6 promotes its deacetylase activity, Biological Sciences; Molecular Biology; Cell Biology; Functional Aspects of Cell Biology
- Published
- 2019
29. Three-Dimensional Printing of Hydrogel Filters Containing Algae Cells for Copper Removal From Contaminated Water
- Author
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Bryan E. Tomlin, Zhijian Pei, Ketan Thakare, Laura Jerpseth, and Hongmin Qin
- Subjects
0106 biological sciences ,biology ,Chemistry ,Mechanical Engineering ,chemistry.chemical_element ,010501 environmental sciences ,biology.organism_classification ,01 natural sciences ,Copper ,Industrial and Manufacturing Engineering ,Computer Science Applications ,Contaminated water ,Algae ,Chemical engineering ,Control and Systems Engineering ,010608 biotechnology ,Three dimensional printing ,0105 earth and related environmental sciences - Abstract
Copper contamination of drinking water and marine areas is detrimental to human health and the environment. Physical and chemical approaches currently used for copper removal from water tend to be expensive and may introduce chemicals to the water. Using suspended algae to remove copper is a biological approach. Its cost is relatively low, and algae can be used for other purposes after being used for copper removal. However, this approach using algae is currently limited in its usefulness due to technological barriers. For example, chemical agents used to remove suspended algae from water after copper is absorbed can cause secondary contamination. Using immobilized algae instead of suspended algae can overcome these problems. In this preliminary study, hydrogel filters containing algae cells and those containing no algae cells are printed on an extrusion-based 3D printer. They were used in a custom-build filtration setup for copper removal. Experimental results show that hydrogel filters containing algae cells reduced copper concentration in the test solution by about 83% (from 3 to 0.5 ppm) after 1 h of filtration, while hydrogel filters containing no algae cells reduced copper concentration in the test solution by about 50% (from 3 to 1.5 ppm) after 1 h of filtration.
- Published
- 2021
30. Applying Layer-by-Layer Photo-Crosslinking in Green Bioprinting: Shape Fidelity and Cell Viability of Printed Hydrogel Constructs Containing Algae Cells.
- Author
-
Thakare, Ketan, Jerpseth, Laura, Zhijian Pei, and Hongmin Qin
- Published
- 2022
- Full Text
- View/download PDF
31. Host Suitability for Crapemyrtle Bark Scale (Acanthococcus lagerstroemiae) Differed Significantly among Crapemyrtle Species
- Author
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Hongmin Qin, Mengmeng Gu, Runshi Xie, Bin Wu, and Gary W. Knox
- Subjects
0106 biological sciences ,010504 meteorology & atmospheric sciences ,host suitability ,host range ,Lythrum californicum ,Biology ,medicine.disease_cause ,01 natural sciences ,susceptibility ,Acanthococcus ,Infestation ,Ornamental plant ,medicine ,Cultivar ,lcsh:Science ,0105 earth and related environmental sciences ,Host (biology) ,Lythrum ,Inoculation ,biology.organism_classification ,future breeding programs ,crapemyrtle bark scale ,010602 entomology ,Horticulture ,Insect Science ,lcsh:Q ,Lagerstroemia ,Lagerstroemia spp - Abstract
Crapemyrtle bark scale (CMBS, Acanthococcus lagerstroemiae), an invasive polyphagous sap-sucking hemipteran, has spread across 14 states of the United States since 2004. The infestation of CMBS has negatively impacted the flowering of ornamental plants and even the fruiting of some crops. Host identification is critical for determining potential risks in ecosystems and industries and helps develop strategic management. A host confirmation test was performed over 25 weeks using six Lagerstroemia species (L. caudata, L. fauriei &lsquo, Kiowa&rsquo, L. indica &lsquo, Dynamite&rsquo, L. limii, L. speciosa, and L. subcostata) and California loosestrife (Lythrum californicum). The 25-week observations confirmed all tested plants as the hosts. The repeated measures of analysis of variance (ANOVA, Tukey&rsquo, s HSD, &alpha, = 0.05) indicated that the average number of CMBS females differed significantly between L. limii and L. speciosa. The highest number of the females observed on L. limii was 576 ±, 25 (mean ±, SE) at 17 weeks after inoculation (WAI), while the highest number was 57 ±, 15 on L. speciosa at 19 WAI. In addition, L. subcostata and L. speciosa had significantly high and low numbers of males, respectively, among the Lagerstroemia species. Our results suggest that L. speciosa could be incorporated in developing new cultivars with low CMBS suitability.
- Published
- 2020
- Full Text
- View/download PDF
32. Bioprinting Using Algae: Effects of Extrusion Pressure and Needle Diameter on Cell Quantity in Printed Samples
- Author
-
Zhijian Pei, Hongmin Qin, Laura Jerpseth, and Ketan Thakare
- Subjects
Materials science ,biology ,Mechanical Engineering ,0206 medical engineering ,Cell ,02 engineering and technology ,021001 nanoscience & nanotechnology ,biology.organism_classification ,020601 biomedical engineering ,Industrial and Manufacturing Engineering ,Computer Science Applications ,medicine.anatomical_structure ,Algae ,Control and Systems Engineering ,medicine ,Extrusion ,Composite material ,0210 nano-technology - Abstract
Bioprinting is the fabrication of structures based on layer-by-layer deposition of biomaterials. Applications of bioprinting using plant or algae cells include the production of metabolites for use in pharmaceutical, cosmetic, and food industries. Reported studies regarding effects of extrusion pressure and needle diameter on cell viability in bioprinting have used animal cells. There are no reports regarding effects of extrusion pressure and needle diameter on cell viability using plant or algae cells. This paper fills this knowledge gap by reporting an experimental investigation on effects of extrusion pressure and needle diameter on cell quantity (an indicator of cell viability) in extrusion-based bioprinting of hydrogel-based bioink containing Chlamydomonas reinhardtii algae cells. Extrusion pressure levels used in this study were 3, 5, and 7 bar, and needle diameter levels were 200, 250, and 400 µm. Algae cell quantity in printed samples was measured on the third day and sixth day post bioprinting. Results show that, when extrusion pressure increases or needle diameter decreases, algae cell quantity in printed samples decreases.
- Published
- 2020
33. Editorial: Dissecting the Intraflagellar Transport System in Physiology and Disease: Cilia-Related and -Unrelated Roles
- Author
-
Junmin Pan, Francesca Finetti, Hongmin Qin, Benedicte Delaval, Centre de recherche en Biologie Cellulaire (CRBM), and Université Montpellier 2 - Sciences et Techniques (UM2)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Université Montpellier 1 (UM1)
- Subjects
intraflagellar transport (IFT) ,IFT ,Disease ,[SDV.BC]Life Sciences [q-bio]/Cellular Biology ,Biology ,IFT interactors ,03 medical and health sciences ,Cell and Developmental Biology ,0302 clinical medicine ,IFT- related diseases ,Intraflagellar transport ,IFT-A and IFT-B complexes ,lcsh:QH301-705.5 ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology ,0303 health sciences ,030219 obstetrics & reproductive medicine ,Cilium ,Cell Biology ,Cell biology ,Editorial ,related diseases ,protein trafficking ,lcsh:Biology (General) ,Protein trafficking ,Developmental Biology - Abstract
International audience
- Published
- 2020
34. Feasible Regions of Bioink Composition, Extrusion Pressure, and Needle Size for Continuous Extrusion-Based Bioprinting
- Author
-
Zhijian Pei, Xingjian Wei, Laura Jerpseth, Hongmin Qin, Abhinav Bhardwaj, and Ketan Thakare
- Subjects
0303 health sciences ,Materials science ,Mechanical Engineering ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Industrial and Manufacturing Engineering ,Computer Science Applications ,Needle size ,03 medical and health sciences ,Control and Systems Engineering ,Extrusion ,Composite material ,0210 nano-technology ,030304 developmental biology - Abstract
Bioprinting has many potential applications in drug screening, tissue engineering, and regenerative medicine. In extrusion-based bioprinting, the extruded strand is the fundamental building block for printed constructs and needs to be of good quality and continuous in structure. In recent years, many studies have been conducted on extrusion-based bioprinting. However, values of process parameters leading to continuous extrusion of strands have rarely been reported. In this paper, feasible regions of bioink composition, extrusion pressure, and needle size for continuous strand extrusion have been evaluated. The information on feasible regions for extruding continuous strands, provided in this paper, can be useful in deciding appropriate extrusion pressure and needle size for the bioink of different compositions (ratios of alginate:methylcellulose) in extrusion-based bioprinting.
- Published
- 2020
35. Experimental Investigation of Effects of Extrusion Pressure on Cell Growth of Bioprinted Algae Cells in Green Bioprinting
- Author
-
Laura Jerpseth, Hongmin Qin, Zhijian Pei, and Ketan Thakare
- Subjects
Algae ,biology ,Tissue engineering ,Cell growth ,Chemistry ,Biophysics ,Extrusion ,biology.organism_classification - Abstract
In bioprinting, biomaterials are deposited layer-by-layer to fabricate structures. Bioprinting has many potential applications in drug screening, tissue engineering, and regenerative medicine. Both animal cells and plant cells can be used to synthesize bioinks. Green bioprinting uses bioinks that have been synthesized using plant cells. Constructs fabricated via green bioprinting contain immobilized plant cells, with these cells arranged at desired locations. The constructs provide scaffolds for cell growth. Printing parameters affecting the growth of cells in green bioprinted constructs include print speed, needle diameter, extrusion temperature, and extrusion pressure. This paper reports a study to examine effects of extrusion pressure on cell growth (measured by cell count) in bioprinted constructs, using bioink containing Chlamydomonas reinhardtii algae cells. Three levels of extrusion pressure were used: 3, 5, and 7 bar. Cell counts in the bioprinted constructs were measured on the third and sixth days after bioprinting. It was found that, as extrusion pressure increased, cell count decreased on both the third and sixth days after bioprinting. Furthermore, the difference in cell counts between the third and the sixth days decreased as extrusion pressure increased. These trends suggest that increasing extrusion pressure during green bioprinting negatively affects cell growth. A possible reason for these trends is physical damage to or death of cells in the bioprinted constructs when extrusion pressure became higher.
- Published
- 2020
36. Experimental Investigation of Alginate-Methylcellulose Composition and Printing Direction on Dimensional Accuracy of 3D Printed Constructs
- Author
-
Hongmin Qin, Zhijian Pei, Ketan Thakare, Laura Jerpseth, and Xingjian Wei
- Subjects
3d printed ,Materials science ,Nanotechnology ,Statistical analysis ,Composition (language) - Abstract
Bioprinting technology has a great potential in the fields of tissue engineering and regenerative medicine. In tissue engineering, for a bioprinted tissue to be successful in supporting regeneration of new tissue, it should morphologically mimic the native tissue in vivo. Therefore, the bioprinted tissue needs to be dimensionally accurate. In extrusion-based bioprinting, 3D printing process parameters and bioink properties affect dimensional accuracy of printed constructs. Currently, little information is available on effects of bioink composition and printing direction on dimensional accuracy of 3D printed constructs using alginate:methylcelluolose based bioink. In this study, strands were printed using four compositions of alginate:methylcellulose bioink and two printing directions. The four compositions of alginate:methylcellulose bioink were 1:1.5, 1:2, 1:2.5 and 1:3, and the two printing directions were vertical and horizontal. The statistical analysis of strand width measurement data revealed that while bioink composition has significant effect, printing direction does not affect the strand width of 3D printed constructs at the significance level of 0.05.
- Published
- 2020
37. Experimental Investigation of Effects of Needle Diameter on Algae Cell Growth in Green Bioprinting
- Author
-
Ketan Thakare, Hongmin Qin, Laura Jerpseth, and Zhijian Pei
- Subjects
Algae ,biology ,Cell growth ,Chemistry ,Biophysics ,biology.organism_classification - Abstract
Bioprinting can fabricate structures based on layer-by-layer deposition of biomaterials. Bioprinting of animal cells shows great promise for tissue regeneration and tissue research. Plant cells can also be used when synthesizing bioink. Bioprinting with bioink that has been synthesized with plant cells instead of animal cells is called green bioprinting. Green bioprinting offers greater spatial control over the growth of plant matter by immobilizing cells. It is known that certain variables affect the growth and propagation (cellular reproduction) of cells in green bioprinted constructs post bioprinting. These variables include accessibility to components required for photosynthesis, such as nutrients, moisture and light. However, multiple parameters can also vary during the extrusion of bioink in the bioprinting process, including extrusion pressure, extrusion temperature, needle diameter, and printing speed. This paper reports a study to examine the effects of needle diameter during bioprinting on the growth of Chlamydomonas reinhardtii algae cells in green bioprinted constructs. Growth of Chlamydomonas reinhardtii algae cells was quantified by measuring cell count. The constructs were bioprinted with needle diameters of 22 gauge, 25 gauge, and 27 gauge. It was found that decreasing needle diameter was correlated with decreased cell count on the second and fifth days post bioprinting. Furthermore, the magnitude of cell count increase between the second and the fifth days post bioprinting decreased with decreasing needle diameter. Future research is needed to examine the effects of other printing parameters on cell growth.
- Published
- 2020
38. Preliminary Investigation of Removing Copper Contamination From Water Using Algae
- Author
-
Laura Jerpseth, Hongmin Qin, Zhijian Pei, and Ketan Thakare
- Subjects
Pollution ,biology ,Chemistry ,media_common.quotation_subject ,chemistry.chemical_element ,Heavy metals ,Contamination ,biology.organism_classification ,Copper ,Algae ,Environmental chemistry ,Spectroscopy ,Inductively coupled plasma mass spectrometry ,Copper contamination ,media_common - Abstract
Drinking water contaminated with metal ions can cause negative health effects in humans. Acute heavy metal poisoning can cause such symptoms as vomiting and fainting, while chronic heavy metal poisoning can lead to organ failure and death. It has previously been shown that concentration of metal ions in water solution was decreased by algae. This paper reports a study to examine the ability of two Chlamydomonas reinhardtii algae strains to remove copper ions from water solution. Chlamydomonas reinhardtii was chosen for this study because it is easy to culture, and can be used to generate strains with a higher efficiency to remove metals. In this study, the three-factor, two-level full factorial design was used to conduct experiments. Three factors were algae strain, initial copper concentration, and exposure time. Two levels of the algae strain are: cc125 — the Chlamydomonas reinhardtii strain found commonly in the wild, and AGG1 — an experimentally modified Chlamydomonas reinhardtii strain. Two levels of initial copper concentration and exposure time were 1.5 and 3 ppm, and 2.5 and 5 hours, respectively. Copper concentration in the water solution after experiments was measured using inductively coupled plasma-mass spectrometry, or ICP-MS. Statistical analysis showed that algae strain was the only factor that significantly affected percentage decrease in copper concentration, at the significance level of 0.05. The cc125 strain decreased copper concentration more efficiently than the AGG1 strain. The cc125 strain decreased copper concentration by 97% for the water solution with an initial copper concentration of 1.5 ppm, and by 90% for the solution with an initial copper concentration of 3 ppm. Copper concentrations of all solutions treated by the cc125 strain were below the Environmental Protection Agency pollution threshold level of 1.3 ppm.
- Published
- 2020
39. Biosynthesis of Linear Protein Nanoarrays Using the Flagellar Axoneme.
- Author
-
Hiroaki Ishikawa, Tian, Jie L., Yu, Jefer E., Marshall, Wallace F., and Hongmin Qin
- Published
- 2022
- Full Text
- View/download PDF
40. Effects of Extrusion Temperature and Printing Direction in Bioprinting on Profile Accuracy of 3D Printed Constructs
- Author
-
Zhijian Pei, Ketan Thakare, Hongmin Qin, and Xingjian Wei
- Subjects
3d printed ,Materials science ,Self-healing hydrogels ,Statistical analysis ,Extrusion ,Composite material - Abstract
In extrusion-based bioprinting, 3D printing process parameters affect dimensional accuracy of printed constructs. However, little information is currently available on effects of extrusion temperature and printing direction on dimensional accuracy of 3D printed constructs using Alginate:Methylcelluolose hydrogel. In this study, strand thickness of 3D printed constructs printed at temperature of 35°C, 40°C, 45°C and at vertical and horizontal printing direction were measured. The statistical analysis revealed that extrusion temperature and printing direction have significant effect on the strand thickness of 3D printed constructs.
- Published
- 2019
41. Speed and Diffusion of Kinesin-2 Are Competing Limiting Factors in Flagellar Length-Control Model
- Author
-
Wallace F. Marshall, Hongmin Qin, Rui Ma, and Nathan L. Hendel
- Subjects
Biophysics ,Kinesins ,Flagellum ,Diffusion ,03 medical and health sciences ,0302 clinical medicine ,Intraflagellar transport ,Genetics ,Organelle Size ,Diffusion (business) ,Control (linguistics) ,030304 developmental biology ,Physics ,0303 health sciences ,biology ,Chlamydomonas ,fungi ,food and beverages ,Limiting ,Articles ,Biological Sciences ,biology.organism_classification ,Protein Transport ,Flagella ,Physical Sciences ,Chemical Sciences ,Kinesin ,030217 neurology & neurosurgery - Abstract
Flagellar length control in Chlamydomonas is a tractable model system for studying the general question of organelle size regulation. We have previously proposed that the diffusive return of the kinesin motor that powers intraflagellar transport can play a key role in length regulation. Here, we explore how the motor speed and diffusion coefficient for the return of kinesin-2 affect flagellar growth kinetics. We find that the system can exist in two distinct regimes, one dominated by motor speed and one by diffusion coefficient. Depending on length, a flagellum can switch between these regimes. Our results indicate that mutations can affect the length in distinct ways. We discuss our theory's implication for flagellar growth influenced by beating and provide possible explanations for the experimental observation that a beating flagellum is usually longer than its immotile mutant. These results demonstrate how our simple model can suggest explanations for mutant phenotypes.
- Published
- 2019
42. Cell-based biosynthesis of linear protein nanoarrays
- Author
-
Hongmin Qin, Jefer E. Yu, Sindy K. Y. Tang, Wallace F. Marshall, Hiroaki Ishikawa, and Jie L. Tian
- Subjects
Axoneme ,Scaffold protein ,Intraflagellar transport ,Chemistry ,Cilium ,Protein microarray ,Biophysics ,Signal transducing adaptor protein ,Flagellum ,Green fluorescent protein - Abstract
We describe an approach for using the flagella axoneme as the basis for biological self-assembling protein nanoarrays. The axoneme is the insoluble protein core of the eukaryotic flagellum or cilium. By attaching a protein of interest to particular axonemal proteins, it is possible to exploit the intraflagellar transport system to incorporate those proteins into the axoneme as it assembles. Using the axoneme as a protein array confers several advantages, such as high protein loading capacity compared to other bioparticle systems; genetically programmed self-assembly without the need for any linking steps; single-step purification of particles without the need for cell lysis, allowing retention and re-use of biomass; and choice of isolating the particle as a membrane enclosed vesicle or as an exposed protein array. Here we test several potential axonemal proteins as adaptor proteins, using green fluorescent protein as a test case. We find that FAP20 is an ideal scaffold protein for this purpose in that it shows high incorporation and uniform localization. We verify that FAP20-GFP constructs are stably associated with the axoneme during purification and storage, that the GFP moiety can be released by protease cleavage, and that the flagellar array can be easily encapsulated in aqueous-oil emulsion droplets for use in microfluidic assays.
- Published
- 2019
43. Three-Dimensional Printing of Hydrogel Filters Containing Algae Cells for Copper Removal From Contaminated Water.
- Author
-
Thakare, Ketan, Jerpseth, Laura, Zhijian Pei, Tomlin, Bryan, and Hongmin Qin
- Published
- 2021
- Full Text
- View/download PDF
44. Bioprinting Using Algae: Effects of Extrusion Pressure and Needle Diameter on Cell Quantity in Printed Samples.
- Author
-
Thakare, Ketan, Jerpseth, Laura, Hongmin Qin, and Zhijian Pei
- Published
- 2021
- Full Text
- View/download PDF
45. Feasible Regions of Bioink Composition, Extrusion Pressure, and Needle Size for Continuous Extrusion-Based Bioprinting.
- Author
-
Thakare, Ketan, Xingjian Wei, Jerpseth, Laura, Bhardwaj, Abhinav, Hongmin Qin, and Zhijian Pei
- Published
- 2020
- Full Text
- View/download PDF
46. H+- and Na+- elicited rapid changes of the microtubule cytoskeleton in the biflagellated green alga Chlamydomonas
- Author
-
Hongmin Qin, Michelle Mynlieff, Karl F. Lechtreck, Mike R Visetsouk, Yi Liu, and Pinfen Yang
- Subjects
0301 basic medicine ,Time Factors ,QH301-705.5 ,Science ,ved/biology.organism_classification_rank.species ,Endogeny ,ocean acidification ,Photosynthesis ,Microtubules ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Microtubule ,Cations ,None ,Animals ,Biology (General) ,Cytoskeleton ,Model organism ,salt stress ,General Immunology and Microbiology ,biology ,ved/biology ,General Neuroscience ,Chlamydomonas ,Sodium ,General Medicine ,Cell Biology ,Hydrogen-Ion Concentration ,biology.organism_classification ,Plant cell ,intracellular acidification ,Cell biology ,EB1 ,030104 developmental biology ,Medicine ,sense organs ,Intracellular ,Research Article ,microtubule ,Hydrogen - Abstract
Although microtubules are known for dynamic instability, the dynamicity is considered to be tightly controlled to support a variety of cellular processes. Yet diverse evidence suggests that this is not applicable to Chlamydomonas, a biflagellate fresh water green alga, but intense autofluorescence from photosynthesis pigments has hindered the investigation. By expressing a bright fluorescent reporter protein at the endogenous level, we demonstrate in real time discreet sweeping changes in algal microtubules elicited by rises of intracellular H+ and Na+. These results from this model organism with characteristics of animal and plant cells provide novel explanations regarding how pH may drive cellular processes; how plants may respond to, and perhaps sense stresses; and how organisms with a similar sensitive cytoskeleton may be susceptible to environmental changes.
- Published
- 2017
47. Author response: H+- and Na+- elicited rapid changes of the microtubule cytoskeleton in the biflagellated green alga Chlamydomonas
- Author
-
Hongmin Qin, Michelle Mynlieff, Karl F. Lechtreck, Mike R Visetsouk, Pinfen Yang, and Yi Liu
- Subjects
biology ,Chemistry ,Microtubule cytoskeleton ,Chlamydomonas ,biology.organism_classification ,Cell biology - Published
- 2017
48. H+- and Na+-elicited swift changes of the microtubule system in the biflagellated green alga Chlamydomonas
- Author
-
Karl F. Lechtreck, Pinfen Yang, Mike R Visetsouk, Liu Yi, Hongmin Qin, and Michelle Mynlieff
- Subjects
biology ,Fresh water ,Microtubule ,Chlamydomonas ,Botany ,Biophysics ,Interphase ,Endogeny ,sense organs ,biology.organism_classification ,Cytoskeleton ,Photosynthesis ,Intracellular - Abstract
The microtubule cytoskeletal system is integral to diverse cellular processes. Although microtubules are known for dynamic instability, the system is tightly controlled in typical interphase animal cells. In contrast, diverse evidence suggests that the system is mercurial in the unicellular fresh water green alga,Chlamydomonas, but intense autofluorescence from photosynthesis pigments has hindered the investigation. By expressing a bright fluorescent reporter protein at the endogenous level, we demonstrate in real time discreet sweeping changes in algal microtubules elicited by fluctuation of intracellular H+and Na+. These results suggest disparate sensitivity of this vital yet delicate system in diverse organisms; and illuminate how pH may drive crucial cellular processes; how plants respond to, and perhaps sense stresses; and how many species could be susceptible to accelerated changes in global environments.
- Published
- 2017
- Full Text
- View/download PDF
49. IFT57 stabilizes the assembled intraflagellar transport complex and mediates transport of motility-related flagellar cargo
- Author
-
Catherine Hernandez, Xue Jiang, Zhaolan Ding, Daniel Hernandez, Karl J. Aufderheide, Beiyan Nan, and Hongmin Qin
- Subjects
0301 basic medicine ,Axoneme ,Protein subunit ,Movement ,Dynein ,Flagellum ,Biology ,03 medical and health sciences ,Intraflagellar transport ,Adaptor Proteins, Signal Transducing ,Plant Proteins ,Autotrophic Processes ,Cell swimming ,Protein Stability ,Cilium ,Dyneins ,Biological Transport ,Cell Biology ,Transport protein ,Cell biology ,Mutagenesis, Insertional ,Protein Transport ,030104 developmental biology ,Flagella ,Mutation ,sense organs ,5' Untranslated Regions ,Chlamydomonas reinhardtii - Abstract
Intraflagellar transport (IFT) is essential for the assembly and maintenance of flagella and cilia. Recent biochemical studies have shown that IFT complex B (IFT-B) is comprised of two subcomplexes, IFT-B1 and IFT-B2. The IFT-B2 subunit IFT57 lies at the interface between IFT-B1 and IFT-B2. Here, using a Chlamydomonasreinhardtii mutant for IFT57, we tested whether IFT57 is required for IFT-B complex assembly by bridging IFT-B1 and IFT-B2 together. In the ift57-1 mutant, levels of IFT57 and other IFT-B proteins were greatly reduced at the whole-cell level. However, strikingly, in the protease-free flagellar compartment, while the level of IFT57 was reduced, the levels of other IFT particle proteins were not concomitantly reduced but were present at the wild-type level. The IFT movement of the IFT57-deficient IFT particles was also unchanged. Moreover, IFT57 depletion disrupted the flagellar waveform, leading to cell swimming defects. Analysis of the mutant flagellar protein composition showed that certain axonemal proteins were altered. Taken together, these findings suggest that IFT57 does not play an essential structural role in the IFT particle complex but rather functions to prevent it from degradation. Additionally, IFT57 is involved in transporting specific motility-related proteins.
- Published
- 2016
50. Probing the role of IFT particle complex A and B in flagellar entry and exit of IFT-dynein in Chlamydomonas
- Author
-
David A. Silva, Shana M. Williamson, Hongmin Qin, and Elizabeth Richey
- Subjects
biology ,Protein subunit ,Cilium ,Algal Proteins ,Dynein ,Chlamydomonas ,Mutant ,Dyneins ,Biological Transport ,macromolecular substances ,Cell Biology ,Plant Science ,General Medicine ,Flagellum ,biology.organism_classification ,Cell biology ,Flagella ,Intraflagellar transport ,Multiprotein Complexes ,Mutation ,sense organs ,Flagellar tip ,Chlamydomonas reinhardtii - Abstract
Mediating the transport of flagellar precursors and removal of turnover products, intraflagellar transport (IFT) is required for flagella assembly and maintenance. The IFT apparatus is composed of the anterograde IFT motor kinesin II, the retrograde IFT motor IFT-dynein, and IFT particles containing two complexes, A and B. In order to have a balanced two-way transportation, IFT-dynein has to be carried into flagella and transported to the flagellar tip by kinesin II, where it is activated to drive the retrograde IFT back to the flagellar base. In this study, we investigated the role of complex A and complex B in the flagellar entry and exit of IFT-dynein. We showed that regardless of the amount of complex A, IFT-dynein accumulated proportionally to the amount of complex B in the flagella of fla15/ift144 and fla17-1/ift139, two complex A temperature-sensitive mutants. Complex A was depleted from both cellular and flagellar compartments in fla15/ift144 mutant. However, in fla17-1/ift139 mutant, the flagellar level of complex A was at the wild-type level, which was in radical contrast to the significantly reduced cellular amount of complex A. These results support that complex A is not required for the flagellar entry of IFT-dynein, but might be essential for the lagellar exit of IFT-dynein. Additionally, we confirmed the essential role of IFT172, a complex B subunit, in the flagellar entry of IFT-dynein. These results indicate that complexes A and B play complementary but distinct roles for IFT-dynein, with complex B carrying IFT-dynein into the flagella while complex A mediates the flagellar exit of IFT-dynein.
- Published
- 2011
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