1. Copy number variations and multiallelic variants in Korean patients with Leber congenital amaurosis.
- Author
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Surl D, Shin S, Lee ST, Choi JR, Lee J, Byeon SH, Han SH, Lim HT, and Han J
- Subjects
- Abnormalities, Multiple diagnosis, Adolescent, Adult, Antigens, Neoplasm blood, Antigens, Neoplasm genetics, Cell Cycle Proteins blood, Cell Cycle Proteins genetics, Child, Child, Preschool, Ciliopathies diagnosis, Cytoskeletal Proteins blood, Cytoskeletal Proteins genetics, Eye Abnormalities diagnosis, Female, Genetic Association Studies, Genetic Therapy, Guanylate Cyclase blood, Guanylate Cyclase genetics, High-Throughput Nucleotide Sequencing, Humans, Infant, Intracellular Signaling Peptides and Proteins genetics, Kidney Diseases, Cystic diagnosis, Leber Congenital Amaurosis diagnostic imaging, Leber Congenital Amaurosis therapy, Leigh Disease diagnosis, Male, Mutation, Nicotinamide-Nucleotide Adenylyltransferase blood, Nicotinamide-Nucleotide Adenylyltransferase genetics, Optic Atrophies, Hereditary diagnosis, Organ Transplantation, Pedigree, Receptors, Cell Surface blood, Receptors, Cell Surface genetics, Republic of Korea, Retrospective Studies, Transposition of Great Vessels genetics, cis-trans-Isomerases genetics, Abnormalities, Multiple genetics, Cerebellum abnormalities, Ciliopathies genetics, DNA Copy Number Variations genetics, Eye Abnormalities genetics, Kidney Diseases, Cystic genetics, Leber Congenital Amaurosis diagnosis, Leber Congenital Amaurosis genetics, Leigh Disease genetics, Optic Atrophies, Hereditary genetics, Retina abnormalities
- Abstract
Purpose: We comprehensively evaluated the mutational spectrum of Leber congenital amaurosis (LCA) and investigated the molecular diagnostic rate and genotype-phenotype correlation in a Korean cohort., Methods: This single-center retrospective case series included 50 Korean patients with LCA between June 2015 and March 2019. Molecular analysis was conducted using targeted panel-based next-generation sequencing, including deep intronic and regulatory variants or whole exome sequencing. The molecular diagnosis was made based on the inheritance pattern, zygosity, and pathogenicity., Results: Among the 50 patients, 27 patients (54%) were male, and 11 (22%) showed systemic features. Genetic variants highly likely to be causative were identified in 78% (39/50) of cases and segregated into families. We detected two pathogenic or likely pathogenic variants in a gene linked to a recessive trait without segregation analysis in three cases (6.0%). GUCY2D (20%), NMNAT1 (18%), and CEP290 (16%) were the most frequently mutated genes in Korean LCA. Copy number variations were found in three patients, which accounted for 6% of LCA cases. A possible dual molecular diagnosis (Senior-Løken syndrome along with Leigh syndrome, and Joubert syndrome with transposition of the great arteries) was made in two patients (4%). Three of 50 patients were medically or surgically actionable: one patient for RPE65 gene therapy and two patients with WDR19 Senior-Løken syndrome for early preparation for kidney and liver transplantations., Conclusions: This study demonstrated that approximately 4% of patients may have dual molecular diagnoses, and 6% were surgically or medically actionable in LCA. Therefore, accurate molecular diagnosis and careful interpretation of next-generation sequencing results can be of great help in patients with LCA., (Copyright © 2020 Molecular Vision.)
- Published
- 2020