456 results on '"Ground-State"'
Search Results
2. Temperature Evolution of Two-State Lasing in Microdisk Lasers with InAs/InGaAs Quantum Dots.
- Author
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Makhov, Ivan, Ivanov, Konstantin, Moiseev, Eduard, Fominykh, Nikita, Dragunova, Anna, Kryzhanovskaya, Natalia, and Zhukov, Alexey
- Subjects
- *
QUANTUM dots , *INDIUM gallium arsenide , *HIGH temperatures , *NUMERICAL functions , *CRITICAL temperature , *WHISPERING gallery modes , *SUPERCONDUCTING transitions - Abstract
One-state and two-state lasing is investigated experimentally and through numerical simulation as a function of temperature in microdisk lasers with Stranski–Krastanow InAs/InGaAs/GaAs quantum dots. Near room temperature, the temperature-induced increment of the ground-state threshold current density is relatively weak and can be described by a characteristic temperature of about 150 K. At elevated temperatures, a faster (super-exponential) increase in the threshold current density is observed. Meanwhile, the current density corresponding to the onset of two-state lasing was found to decrease with increasing temperature, so that the interval of current density of pure one-state lasing becomes narrower with the temperature increase. Above a certain critical temperature, ground-state lasing completely disappears. This critical temperature drops from 107 to 37 °C as the microdisk diameter decreases from 28 to 20 μm. In microdisks with a diameter of 9 μm, a temperature-induced jump in the lasing wavelength from the first excited-state to second excited-state optical transition is observed. A model describing the system of rate equations and free carrier absorption dependent on the reservoir population provides a satisfactory agreement with experimental results. The temperature and threshold current corresponding to the quenching of ground-state lasing can be well approximated by linear functions of saturated gain and output loss. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
3. Screening Constant per Unit Nuclear Charge Studies of Rydberg Resonances Due to the 4p → nd and ns Transitions in Se + Ions.
- Author
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Sakho, Ibrahima
- Subjects
NUCLEAR charge ,RYDBERG states ,METASTABLE states ,RESONANCE ,DELOCALIZATION energy - Abstract
Calculations of high-lying energy resonances of 12 Rydberg series due to the 4p → nd and 4p → ns transitions from the 4s
2 4p3 3 S°3/2 ground-state and the 4s2 4p3 2 P°3/2,1/2 and 4s2 4p3 2 D°5/2,3/2 metastable states of the Se+ ion are reported. The calculations believed to be the first theoretical ones are performed using the Screening Constant per Unit Nuclear Charge (SCUNC) method up to n = 40. Analysis of the present results is achieved in the framework of the standard quantum-defect theory and of the SCUNC-procedure by calculating the effective nuclear charge. For many resonances, the SCUNC-method reproduces the ALS measurements excellently [Esteves et al., Phys. Rev. A, 84 013406 (2011)] up to n = 25. However, for some resonances belonging to the 4s2 4p2 (1 D2 )nd (2 D) and 4s2 4p2 (1 D2 )ns (2 D) and to the 4s2 4p2 (1 D2 )nd (2 S) and 4s2 4p2 (1 D2 )nd (2 P1/2 ) Rydberg series, the ALS data overlap at high n values. In addition, negative quantum-defect values were determined where positive values are allowable. In the present work, positive quantum defect values almost constants are obtained along all the series investigated up to n = 40, and the narrow resonances are clearly separated. Overall, the present theoretical study provides confidence in the ALS data on Se+ ions for astrophysical interest as far as the understanding of the chemical evolution of Se in the universe is concerned. [ABSTRACT FROM AUTHOR]- Published
- 2022
- Full Text
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4. Influence of the Torsion Angle in 3,3'-Dimethyl-2,2'-bipyridine on the Intermediate Valence of Yb in (C5Me5)2 Yb(3,3'-Me2-bipy)
- Author
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Andersen, Richard
- Published
- 2014
5. Screening Constant per Unit Nuclear Charge Studies of Rydberg Resonances Due to the 4p → nd and ns Transitions in Se+ Ions
- Author
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Ibrahima Sakho
- Subjects
energy resonances ,Rydberg series ,ground-state ,metastable states ,quantum-defect ,effective nuclear charge ,Nuclear and particle physics. Atomic energy. Radioactivity ,QC770-798 - Abstract
Calculations of high-lying energy resonances of 12 Rydberg series due to the 4p → nd and 4p → ns transitions from the 4s24p3 3S°3/2 ground-state and the 4s24p3 2P°3/2,1/2 and 4s24p3 2D°5/2,3/2 metastable states of the Se+ ion are reported. The calculations believed to be the first theoretical ones are performed using the Screening Constant per Unit Nuclear Charge (SCUNC) method up to n = 40. Analysis of the present results is achieved in the framework of the standard quantum-defect theory and of the SCUNC-procedure by calculating the effective nuclear charge. For many resonances, the SCUNC-method reproduces the ALS measurements excellently [Esteves et al., Phys. Rev. A, 84 013406 (2011)] up to n = 25. However, for some resonances belonging to the 4s24p2 (1D2)nd (2D) and 4s24p2 (1D2)ns (2D) and to the 4s24p2 (1D2)nd (2S) and 4s24p2 (1D2)nd (2P1/2) Rydberg series, the ALS data overlap at high n values. In addition, negative quantum-defect values were determined where positive values are allowable. In the present work, positive quantum defect values almost constants are obtained along all the series investigated up to n = 40, and the narrow resonances are clearly separated. Overall, the present theoretical study provides confidence in the ALS data on Se+ ions for astrophysical interest as far as the understanding of the chemical evolution of Se in the universe is concerned.
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- 2022
- Full Text
- View/download PDF
6. Influence of the Torsion Angle in 3,3'-Dimethyl-2,2'-bipyridine on the Intermediate Valence of Yb in (C5Me5)2 Yb(3,3'-Me2-bipy)
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Nocton, Grégory
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Inorganic, organic, physical and analytical chemistry ,DECAMETHYLYTTERBOCENE COMPLEXES ,DIPERCHLORATE MONOHYDRATE ,LANTHANIDE COMPLEXES ,GROUND-STATE ,BIPYRIDINES ,1 ,1'-BIISOQUINOLINE ,COORDINATION ,COVALENCY ,EXCHANGE - Abstract
The synthesis and X-ray crystal structures of Cp-2*Yb(3,3'-Me(2)bipy) and [Cp-2 Yb(3,3'-Me(2)bipy)][Cp-2 YbCl1.6I0.4]center dot CH2Cl2 are described. In both complexes, the NCCN torsion angles are approximately 40 degrees. The temperature-independent value of n(f) of 0.17 shows that the valence of ytterbium in the neutral adduct is multiconfigurational, in reasonable agreement with a CASSCF calculation that yields a n(f) value of 0.27; that is, the two configurations in the wave function are f(13)(pi(1))(1) and f(14)(pi(1))(0) in a ratio of 0.27:0.73, respectively, and the open-shell singlet lies 0.28 eV below the triplet state (n(f) accounts for f-hole occupancy; that is, n(f) = 1 when the configuration is f(13) and n(f) = 0 when the configuration is f(14)). A correlation is outlined between the value of nf and the individual ytterbocene and bipyridine fragments such that, as the reduction potentials of the ytterbocene cation and the free x,x'-R-2-bipy ligandsapproach each other, the value of nf and therefore the f(13):f(14) ratio reaches a maximum; conversely, the ratio is minimized as the disparity increases.
- Published
- 2013
7. A first estimate of triply heavy baryon masses from the pNRQCD perturbative static potential
- Author
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Llanes Estrada, Felipe José, Pavlova, Olga I, Williams, Richard, Llanes Estrada, Felipe José, Pavlova, Olga I, and Williams, Richard
- Abstract
© Springer-Verlag. Financial support by grants FPA2011-27853-01, FIS2008-01323 plus 227431, Hadron-Physics2 (EU) and PR34-1856-BSCH, UCM-BSCH GR58/08, 910309, PR34/07-15875, SB2010-0012. We thankfully acknowledge the computer resources, technical expertise and assistance provided by the CeSViMa and the Spanish Supercomputing Network. FJLE is a recipient of a Caja Madrid fellowship and thanks the hospitality of the TU-Munich theoretical physics group and especially Nora Brambilla and Antonio Vairo, who have been influential in several aspects of this work., Within pNRQCD we compute the masses of spin-averaged triply heavy baryons using the now-available NNLO pNRQCD potentials and three-body variational approach. We focus in particular on the role of the purely three-body interaction in perturbation theory. This we find to be reasonably small and of the order 25 MeV. Our prediction for the Omega(ccc) baryon mass is 4900(250) MeV in keeping with other approaches. We propose to search for this hitherto unobserved state at B factories by examining the end point of the recoil spectrum against triple charm., Caja Madrid fellowship, Depto. de Física Teórica, Fac. de Ciencias Físicas, TRUE, pub
- Published
- 2023
8. Universal critical behavior of the two-dimensional Ising spin glass
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Fernández Pérez, Luis Antonio, Marinari, E., Martín Mayor, Víctor, Parisi, G., Ruiz Lorenzo, J. J., Fernández Pérez, Luis Antonio, Marinari, E., Martín Mayor, Víctor, Parisi, G., and Ruiz Lorenzo, J. J.
- Abstract
©2016 American Physical Society. This work was partially supported by the Ministerio de Economía y Competitividad (MINECO, Spain) through Grants No. FIS2012-35719-C02 and No. FIS2013-42840-P, and by the Junta de Extremadura (Spain), with partial contribution by the European Union (FEDER) through Grant No. GRU10158., We use finite size scaling to study Ising spin glasses in two spatial dimensions. The issue of universality is addressed by comparing discrete and continuous probability distributions for the quenched random couplings. The sophisticated temperature dependency of the scaling fields is identified as the major obstacle that has impeded a complete analysis. Once temperature is relinquished in favor of the correlation length as the basic variable, we obtain a reliable estimation of the anomalous dimension and of the thermal critical exponent. Universality among binary and Gaussian couplings is confirmed to a high numerical accuracy., Ministerio de Economía y Competitividad (MINECO)/FEDER, Junta de Extremadura, Depto. de Física Teórica, Fac. de Ciencias Físicas, TRUE, pub
- Published
- 2023
9. Solvable scalar and spin models with near-neighbors interactions
- Author
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Enciso, A., Finkel Morgenstern, Federico, González López, Artemio, Rodríguez González, Miguel Ángel, Enciso, A., Finkel Morgenstern, Federico, González López, Artemio, and Rodríguez González, Miguel Ángel
- Abstract
©2004 Elsevier B.V. This work was partially supported by the Spanish DGI under grant No. BFM2002-02646. A.E. acknowledges the financial support of the Spanish Ministry of Education through an FPU scholarship, We construct new solvable rational and trigonometric spin models with near-neighbors interactions by an extension of the Dunkl operator formalism. In the trigonometric case we obtain a finite number of energy levels in the center of mass frame, while the rational models are shown to possess an equally spaced infinite algebraic spectrum. For the trigonometric and one of the rational models, the corresponding eigenfunctions are explicitly computed. We also study the scalar reductions of the models, some of which had already appeared in the literature, and compute their algebraic eigenfunctions in closed form. In the rational cases, for which only partial results were available, we give concise expressions of the eigenfunctions in terms of generalized Laguerre and Jacobi polynomials., DGI, Spain, Ministry of Education, Spain, Depto. de Física Teórica, Fac. de Ciencias Físicas, TRUE, pub
- Published
- 2023
10. A_(N)-type Dunkl operators and new spin Calogero-Sutherland models
- Author
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Finkel Morgenstern, Federico, Gómez-Ullate Otaiza, David, González López, Artemio, Rodríguez González, Miguel Ángel, Finkel Morgenstern, Federico, Gómez-Ullate Otaiza, David, González López, Artemio, and Rodríguez González, Miguel Ángel
- Abstract
©Springer. This work was partially supported by the DGES under grant PB98-0821. R. Zhdanov would like to acknowledge the financial support by the Spanish Ministry of Education and Culture during his stay at the Universidad Complutense de Madrid., A new family of AN-type Dunkl operators preserving a polynomial subspace of finite dimension is constructed. Using a general quadratic combination of these operators and the usual Dunkl operators, several new families of exactly and quasi-exactly solvable quantum spin Calogero-Sutherland models are obtained. These include, in particular, three families of quasi-exactly solvable elliptic spin Hamiltonians., DGES, Spanish Ministry of Education and Culture, Depto. de Física Teórica, Fac. de Ciencias Físicas, TRUE, pub
- Published
- 2023
11. Exact solutions of a new elliptic Calogero-Sutherland model
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Gómez-Ullate Otaiza, David, González López, Artemio, Rodríguez González, Miguel Ángel, Gómez-Ullate Otaiza, David, González López, Artemio, and Rodríguez González, Miguel Ángel
- Abstract
©2001 Elsevier Science B.V. All rights reserved. The authors gratefully acknowledge the partial financial support of the DGES under grant PB98-0821. They would also like to thank A.M. Perelomov and O. Ragnisco for several useful conversations., A quantum Hamiltonian describing N particles on a line interacting pairwise via an elliptic function potential in the presence of an external field is introduced. For a discrete set of values of the strength of the external potential, it is shown that a finite number of eigenfunctions and eigenvalues of the model can be exactly. computed in an algebraic way., DGES, Depto. de Física Teórica, Fac. de Ciencias Físicas, TRUE, pub
- Published
- 2023
12. ac-driven localization in a two-electron quantum dot molecule
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Creffield, Charles E., Platero, G., Creffield, Charles E., and Platero, G.
- Abstract
©2002 The American Physical Society. C.E.C. thanks Sigmund Kohler for numerous stimulating discussions. This research was supported by the EU via Contract No. FMRX-CT98-0180, and by the DGES (Spain) through Grant No. PB96-0875., We investigate the dynamics of two interacting electrons confined to a pair of coupled quantum dots driven by an external ac field. By numerically integrating the two-electron Schrödinger equation in time, we find that for certain values of the strength and frequency of the ac field the electrons can become localized within just one of the dots, in spite of the Coulomb repulsion. Reducing the system to an effective two-site model of Hubbard type, and applying Floquet theory, leads to a detailed understanding of this effect. This demonstrates the possibility of using appropriate ac fields to manipulate entangled states in mesoscopic devices on extremely short time scales, which is an essential component of practical schemes for quantum information processing., EU, DGES (Spain), Depto. de Física de Materiales, Fac. de Ciencias Físicas, TRUE, pub
- Published
- 2023
13. A Benchmark Study of Aromaticity Indexes for Benzene, Pyridine, and the Diazines-II. Excited State Aromaticity
- Author
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Pedersen, Jacob, Mikkelsen, Kurt V., Pedersen, Jacob, and Mikkelsen, Kurt V.
- Abstract
In this work, one geometrical aromaticity index and four electron sharing indexes are benchmarked for their application in excited state aromaticity calculations. Two computationally feasible and reliable procedures are identified, namely, CAM-B3LYP/cc-pVTZ and omega B97X-D/cc-pVTZ. Topological effects on the first excited singlet and triplet electronic manifold were investigated, and the latter was in general found to display more aromatic character compared to the S1 surface. Besides, geometrical relaxation on each of the manifolds was observed to hamper the aromaticity, thereby resulting in more antiaromatic character. The relative order of excited state aromaticity within the studied molecules was noted to resemble the reversed version of the relative order of ground state aromaticity. Thereby, the following generalization was postulated: The more aromatic a molecule is in its ground state, the more antiaromatic it will be in its electronic first excited manifolds.
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- 2023
14. Crystallization in the hexagonal lattice for ionic dimers.
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Friedrich, Manuel and Kreutz, Leonard
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DIMERS , *PARTICLE interactions , *CRYSTAL lattices , *DISCRETE systems , *ATOMIC number , *DISCRETE-time systems - Abstract
We consider finite discrete systems consisting of two different atomic types and investigate ground-state configurations for configurational energies featuring two-body short-ranged particle interactions. The atomic potentials favor some reference distance between different atomic types and include repulsive terms for atoms of the same type, which are typical assumptions in models for ionic dimers. Our goal is to show a two-dimensional crystallization result. More precisely, we give conditions in order to prove that energy minimizers are connected subsets of the hexagonal lattice where the two atomic types are alternately arranged in the crystal lattice. We also provide explicit formulas for the ground-state energy. Finally, we characterize the net charge, i.e. the difference of the number of the two atomic types. Analyzing the deviation of configurations from the hexagonal Wulff shape, we prove that for ground states consisting of n particles the net charge is at most of order O (n 1 / 4) where the scaling is sharp. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
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15. Theoretical study on kinetics of ammonia-catalyzed ground-state tautomerization in 2-pyridone: effect of chemical modification.
- Author
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Ni, Mei and Fang, Hua
- Abstract
The effects of chemical modification on the kinetics of GSPT in 6R2PY-NH
3 (R=NO2 , CF3 , COOH; CH3 , C2 H5 ) complex, in which the H atom at C6 position of 2PY was substituted, were researched in detail at the M06-2X/6-311 + G(d, p) level. The changes of structural parameter, reaction mechanism, and energies of GSPT before and after the replacement with different substituent have been analyzed. GSPT process in the 6R2PY-NH3 (R=NO2 , CF3 , COOH; CH3 , C2 H5 ) complex preferred to occur via a concerted but asynchronous protolysis pathway regardless of the electronic nature of substituent R. However, the structural parameters, asynchronicity of GSPT, and barrier height were influenced by the different substituent. The Hammett's and Taft's substituent constant had linear correlation with ∆(R1 + R2 ), NBO charges of NH4 + and ∆∆V. [ABSTRACT FROM AUTHOR]- Published
- 2019
- Full Text
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16. King-Plot Analysis of Isotope Shifts in Simple Diatomic Molecules
- Author
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Michail Athanasakis-Kaklamanakis, Shane G. Wilkins, Alexander A. Breier, and Gerda Neyens
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CHARGE RADII ,FIELD SHIFT ,Nuclear Theory ,nucl-th ,Atomic Physics (physics.atom-ph) ,Physics, Multidisciplinary ,Other Fields of Physics ,FOS: Physical sciences ,General Physics and Astronomy ,physics.atm-clus ,nucl-ex ,physics.atom-ph ,Physics - Atomic Physics ,Nuclear Theory (nucl-th) ,ENERGY ,DEPENDENCE ,SPECTRA ,Nuclear Physics - Experiment ,Physics - Atomic and Molecular Clusters ,Nuclear Experiment (nucl-ex) ,LASER SPECTROSCOPY ,Nuclear Experiment ,Science & Technology ,Physics ,Nuclear Physics - Theory ,GROUND-STATE ,Physical Sciences ,Atomic and Molecular Clusters (physics.atm-clus) ,TRANSITION - Abstract
We demonstrate that the isotope shift in isotopomers of diatomic molecules, where the nucleus of one of its constituent atoms is replaced by another isotope, can be expressed as the sum of a field shift and a mass shift, similar to the atomic case. We show that a linear relation holds between atomic and molecular isotopes shifts, thus extending the King-plot analysis to molecular isotope shifts. Optical isotope shifts in YbF and ZrO and infrared isotope shifts in SnH are analyzed with a molecular King-plot approach, utilizing Yb$^{+}$ and Zr$^{+}$ ionic isotope shifts and charge radii of Sn obtained with non-optical methods. The changes in the mean-squared nuclear charge radii $\delta \langle r^2 \rangle$ of $^{170-174,176}$Yb and $^{90-92,94,96}$Zr extracted from the molecular transitions are found to be in excellent agreement with the values from the spectroscopy of Yb$^{+}$ and Zr$^{+}$, respectively. On the contrary, in the case of the vibrational-rotational transition in SnH, no sensitivity to the nuclear volume could be deduced within the experimental resolution, which makes it unsuitable for the extraction of nuclear charge radii but provides insights into the molecular electronic wave function not accessible via other methods. The new opportunities offered by the molecular King-plot analysis for research in nuclear structure and molecular physics are discussed., Comment: Accepted at Physical Review X. Link to abstract: https://journals.aps.org/prx/accepted/be075Kf7E0c16505459d9fa833408356a593fd904
- Published
- 2023
- Full Text
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17. Correlation properties of a one-dimensional repulsive Bose gas at finite temperature
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Giulia De Rosi, Riccardo Rota, Grigori E Astrakharchik, Jordi Boronat, Universitat Politècnica de Catalunya. Departament de Física, and Universitat Politècnica de Catalunya. CCQM - Condensed, Complex and Quantum Matter Group
- Subjects
one-body density matrix ,realization ,Atomic Physics (physics.atom-ph) ,Montecarlo, Mètode de ,FOS: Physical sciences ,Static structure factor ,General Physics and Astronomy ,Física::Termodinàmica [Àrees temàtiques de la UPC] ,Bose-Einstein gas ,Bose-Einstein condensation ,system ,Pair correlation function ,Physics - Atomic Physics ,Path Integral Monte Carlo ,thermodynamics ,Condensed Matter - Strongly Correlated Electrons ,ground-state ,correlations ,Condensació de Bose-Einstein ,pair correlation function ,one-dimensional bose gases ,atoms ,Strongly Correlated Electrons (cond-mat.str-el) ,Correlations ,static structure factor ,Temperature ,temperature ,Computational Physics (physics.comp-ph) ,coherence ,Monte Carlo method ,Condensed Matter - Other Condensed Matter ,path integral monte carlo ,One-body density matrix ,impenetrable bosons ,Quantum Gases (cond-mat.quant-gas) ,One-dimensional Bose gases ,Condensed Matter - Quantum Gases ,Physics - Computational Physics ,Other Condensed Matter (cond-mat.other) - Abstract
We present a comprehensive study shedding light on how thermal fluctuations affect correlations in a Bose gas with contact repulsive interactions in one spatial dimension. The pair correlation function, the static structure factor, and the one-body density matrix are calculated as a function of the interaction strength and temperature with the exact ab-initio Path Integral Monte Carlo method. We explore all possible gas regimes from weak to strong interactions and from low to high temperatures. We provide a detailed comparison with a number of theories, such as perturbative (Bogoliubov and decoherent classical), effective (Luttinger liquid) and exact (ground-state and thermal Bethe Ansatz) ones. Our Monte Carlo results exhibit an excellent agreement with the tractable limits and provide a fundamental benchmark for future observations which can be achieved in atomic gases, cavity quantum-electrodynamic and superconducting-circuit platforms., Main Text: 13 pages, 9 figures. Appendix: 1 page
- Published
- 2023
18. Theoretical Investigation on the Substituent Effect of Halogen Atom on the Ground‐State Double Proton Transfer in the 2‐Pyridone‐Solvent (Solvent: H2O, NH3) Complexes.
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Ni, Mei and Fang, Hua
- Subjects
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PYRIDONE , *PROTON transfer reactions , *HALOGENS - Abstract
The substituted effect on the dynamics of ground‐state proton transfer (GSPT) in 2‐pyridone (2PY) clusters mediated by water or ammonia was investigated at the M06‐2X/6‐311+G(d, p) level. The GSPT process via H‐bonded channel was affected by the bridging solvent. When the bridging molecule changes from one water to one ammonia, proton transfer occurs in a concerted pathway, but the reaction mechanism changes from a synchronous pattern to an asynchronously protolytic pattern, which was ascribed to the larger basicity of ammonia with comparison to water. When two water or two ammonia molecules mediated the GSPT process of 2PY, GSPT reaction in both 2PY clusters prefers a concerted but asynchronous protolytic pathway since the basicity of the H‐bonded chain consisting of water or ammonia dimer was accumulated. For the 6X2PY‐H2O (X=H, F, Cl, Br) complex, the replacement of halogen atom also changed the GSPT mechanism from concertedly synchronicity to concertedly asynchronicity. However, the GSPT mechanism of 6X2PY‐NH3 (X=H, F, Cl, Br) complex was not influenced by the substitutents, but the asynchronicity of GSPT was enlarged apparently. The substituted effect also affected the structural parameters and reduced the barrier heights of GSPT. The substituted effects on the GSPT (ground‐state proton transfer) mechanism depended on the bridging solvent. The barrier height of GSPT was also affected by the substituted halogen atom. No matter which bridging solvent was used to assist the GSPT process, the barrier height all reduced by about 1–5 kcal/mol when the H atom at C6 position was replaced by halogen atom. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
19. DNA sequence and chromatin modifiers cooperate to confer epigenetic bistability at imprinting control regions
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Butz, Stefan, Schmolka, Nina, Karemaker, Ino, Villaseñor, Rodrigo, Schwarz, Isabel, Domcke, Silvia, Uijttewaal, Esther C. H., Jude, Julian, Lienert, Florian, Krebs, Arnaud, Wagenaar, Nathalie P. de, Bao, Xue, Zuber, Johannes, Elling, Ulrich, Schübeler, Dirk, Baubec, Tuncay, Butz, Stefan, Schmolka, Nina, Karemaker, Ino, Villaseñor, Rodrigo, Schwarz, Isabel, Domcke, Silvia, Uijttewaal, Esther C. H., Jude, Julian, Lienert, Florian, Krebs, Arnaud, Wagenaar, Nathalie P. de, Bao, Xue, Zuber, Johannes, Elling, Ulrich, Schübeler, Dirk, and Baubec, Tuncay
- Abstract
Genomic imprinting is regulated by parental-specific DNA methylation of imprinting control regions (ICRs). Despite an identical DNA sequence, ICRs can exist in two distinct epigenetic states that are memorized throughout unlimited cell divisions and reset during germline formation. Here, we systematically study the genetic and epigenetic determinants of this epigenetic bistability. By iterative integration of ICRs and related DNA sequences to an ectopic location in the mouse genome, we first identify the DNA sequence features required for maintenance of epigenetic states in embryonic stem cells. The autonomous regulatory properties of ICRs further enabled us to create DNA-methylation-sensitive reporters and to screen for key components involved in regulating their epigenetic memory. Besides DNMT1, UHRF1 and ZFP57, we identify factors that prevent switching from methylated to unmethylated states and show that two of these candidates, ATF7IP and ZMYM2, are important for the stability of DNA and H3K9 methylation at ICRs in embryonic stem cells.
- Published
- 2022
20. Transcriptional heterogeneity and cell cycle regulation as central determinants of Primitive Endoderm priming
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Perera, Marta, Nissen, Silas Boye, Proks, Martin, Pozzi, Sara, Monteiro, Rita S., Trusina, Ala, Brickman, Joshua M., Perera, Marta, Nissen, Silas Boye, Proks, Martin, Pozzi, Sara, Monteiro, Rita S., Trusina, Ala, and Brickman, Joshua M.
- Abstract
During embryonic development cells acquire identity as they proliferate, implying that an intrinsic facet of cell fate choice requires coupling lineage decisions to cell division. How is the cell cycle regulated to promote or suppress heterogeneity and differentiation? We explore this question combining time lapse imaging with single-cell RNA-seq in the contexts of self-renewal, priming, and differentiation of mouse embryonic stem cells (ESCs) towards the Primitive Endoderm (PrE) lineage. Since ESCs are derived from the inner cell mass (ICM) of the mammalian blastocyst, ESCs in standard culture conditions are transcriptionally heterogeneous containing dynamically interconverting subfractions primed for either of the two ICM lineages, Epiblast and PrE. Here, we find that differential regulation of cell cycle can tip the balance between these primed populations, such that naive ESC culture promotes Epiblast-like expansion and PrE differentiation stimulates the selective survival and proliferation of PrE-primed cells. In endoderm differentiation, this change is accompanied by a counter-intuitive increase in G1 length, also observed in vivo. While fibroblast growth factor/extracellular signal-regulated kinase (FGF/ERK) signalling is a key regulator of ESC differentiation and PrE specification, we find it is not just responsible for ESCs heterogeneity, but also the inheritance of similar cell cycles between sisters and cousins. Taken together, our results indicate a tight relationship between transcriptional heterogeneity and cell cycle regulation in lineage specification, with primed cell populations providing a pool of flexible cell types that can be expanded in a lineage-specific fashion while allowing plasticity during early determination.
- Published
- 2022
21. Filopodia rotate and coil by actively generating twist in their actin shaft
- Author
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Leijnse, Natascha, Barooji, Younes Farhangi, Arastoo, Mohammad Reza, Sonder, Stine Lauritzen, Verhagen, Bram, Wullkopf, Lena, Erler, Janine Terra, Semsey, Szabolcs, Nylandsted, Jesper, Oddershede, Lene Broeng, Doostmohammadi, Amin, Bendix, Poul Martin, Leijnse, Natascha, Barooji, Younes Farhangi, Arastoo, Mohammad Reza, Sonder, Stine Lauritzen, Verhagen, Bram, Wullkopf, Lena, Erler, Janine Terra, Semsey, Szabolcs, Nylandsted, Jesper, Oddershede, Lene Broeng, Doostmohammadi, Amin, and Bendix, Poul Martin
- Abstract
The authors show how tubular surface structures in all cell types, have the ability to twist and perform rotary sweeping motion to explore the extracellular environment. This has implications for migration, sensing and cell communication.Filopodia are actin-rich structures, present on the surface of eukaryotic cells. These structures play a pivotal role by allowing cells to explore their environment, generate mechanical forces or perform chemical signaling. Their complex dynamics includes buckling, pulling, length and shape changes. We show that filopodia additionally explore their 3D extracellular space by combining growth and shrinking with axial twisting and buckling. Importantly, the actin core inside filopodia performs a twisting or spinning motion which is observed for a range of cell types spanning from earliest development to highly differentiated tissue cells. Non-equilibrium physical modeling of actin and myosin confirm that twist is an emergent phenomenon of active filaments confined in a narrow channel which is supported by measured traction forces and helical buckles that can be ascribed to accumulation of sufficient twist. These results lead us to conclude that activity induced twisting of the actin shaft is a general mechanism underlying fundamental functions of filopodia.
- Published
- 2022
22. A quantum magnetic analogue to the critical point of water
- Author
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Ekaterina Pomjakushina, Bruce Normand, Philippe Corboz, S. P. G. Crone, Stefan Wessel, Frédéric Mila, E. Fogh, J. Larrea Jiménez, M. E. Zayed, Andreas Honecker, Henrik M. Rønnow, R. Lortz, Andreas M. Läuchli, Lukas Weber, Ch. Rüegg, Kazimierz Conder, Quantum Condensed Matter Theory (ITFA, IoP, FNWI), ITFA (IoP, FNWI), Faculteit der Geesteswetenschappen, Rheinisch-Westfälische Technische Hochschule Aachen (RWTH), Laboratoire de Physique Théorique et Modélisation (LPTM - UMR 8089), Centre National de la Recherche Scientifique (CNRS)-CY Cergy Paris Université (CY), and Ecole Polytechnique Fédérale de Lausanne (EPFL)
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Quantum phase transition ,Phase transition ,Magnetism ,FOS: Physical sciences ,spin ,01 natural sciences ,010305 fluids & plasmas ,Condensed Matter - Strongly Correlated Electrons ,ground-state ,Critical point (thermodynamics) ,0103 physical sciences ,universality ,[PHYS.COND]Physics [physics]/Condensed Matter [cond-mat] ,010306 general physics ,Spin (physics) ,ComputingMilieux_MISCELLANEOUS ,Condensed Matter - Statistical Mechanics ,Phase diagram ,Physics ,Multidisciplinary ,model ,Condensed matter physics ,Strongly Correlated Electrons (cond-mat.str-el) ,Statistical Mechanics (cond-mat.stat-mech) ,mean-field theory ,transition ,critical-behavior ,Magnetic field ,SPINTRÔNICA ,Ising model ,Condensed Matter::Strongly Correlated Electrons ,phases ,srcu2(bo3)(2) - Abstract
At the familiar liquid-gas phase transition in water, the density jumps discontinuously at atmospheric pressure, but the line of these first-order transitions defined by increasing pressures terminates at the critical point, a concept ubiquitous in statistical thermodynamics. In correlated quantum materials, a critical point was predicted and measured terminating the line of Mott metal-insulator transitions, which are also first-order with a discontinuous charge density. In quantum spin systems, continuous quantum phase transitions (QPTs) have been investigated extensively, but discontinuous QPTs have received less attention. The frustrated quantum antiferromagnet SrCu$_2$(BO$_3$)$_2$ constitutes a near-exact realization of the paradigmatic Shastry-Sutherland model and displays exotic phenomena including magnetization plateaux, anomalous thermodynamics and discontinuous QPTs. We demonstrate by high-precision specific-heat measurements under pressure and applied magnetic field that, like water, the pressure-temperature phase diagram of SrCu$_2$(BO$_3$)$_2$ has an Ising critical point terminating a first-order transition line, which separates phases with different densities of magnetic particles (triplets). We achieve a quantitative explanation of our data by detailed numerical calculations using newly-developed finite-temperature tensor-network methods. These results open a new dimension in understanding the thermodynamics of quantum magnetic materials, where the anisotropic spin interactions producing topological properties for spintronic applications drive an increasing focus on first-order QPTs., 8+4 pages, 4+3 figures
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- 2021
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23. Universal properties of anisotropic dipolar bosons in two dimensions
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Juan Sánchez-Baena, Luisllu Peña Ardila, Gregory Astrakharchik, Ferran Mazzanti, Universitat Politècnica de Catalunya. Departament de Física, and Universitat Politècnica de Catalunya. CCQM - Condensed, Complex and Quantum Matter Group
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droplets ,Física [Àrees temàtiques de la UPC] ,Montecarlo, Mètode de ,General Physics and Astronomy ,FOS: Physical sciences ,bose ,helium ,system ,Monte Carlo method ,ground-state ,Quantum Gases (cond-mat.quant-gas) ,ddc:530 ,Dewey Decimal Classification::500 | Naturwissenschaften::530 | Physik ,Condensed Matter - Quantum Gases ,Bosons ,energy - Abstract
The energy of ultra-dilute quantum many-body systems is known to exhibit a universal dependence on the gas parameter x=n a_0^dx=na0d, with nn the density, dd the dimensionality of the space (d=1,2,3d=1,2,3) and a_0a0 the ss-wave scattering length. The universal regime typically extends up to x\approx 0.001x≈0.001, while at larger values specific details of the interaction start to be relevant and different model potentials lead to different results. Dipolar systems are peculiar in this regard since the anisotropy of the interaction makes a_0a0 depend on the polarization angle \alphaα, so different combinations of n and \alphaα can lead to the same value of the gas parameter x. In this work we analyze the scaling properties of dipolar bosons in two dimensions as a function of the density and polarization dependent scattering length up to very large gas parameter values. Using Quantum Monte Carlo (QMC) methods we study the energy and the main structural and coherence properties of the ground state of a gas of dipolar bosons by varying the density and scattering length for a fixed gas parameter. We find that the dipolar interaction shows relevant scaling laws up to unusually large values of xx that hold almost to the boundaries in the phase diagram where a transition to a stripe phase takes place.
- Published
- 2022
- Full Text
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24. Investigating field-induced magnetic order in Han Purple by neutron scattering up to 25.9 T
- Author
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S. Allenspach, A. Madsen, A. Biffin, M. Bartkowiak, O. Prokhnenko, A. Gazizulina, X. Liu, R. Wahle, S. Gerischer, S. Kempfer, P. Heller, P. Smeibidl, A. Mira, N. Laflorencie, F. Mila, B. Normand, Ch. Rüegg, Fermions Fortement Corrélés (LPT) (FFC), Laboratoire de Physique Théorique (LPT), Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Fédération de recherche « Matière et interactions » (FeRMI), Institut National des Sciences Appliquées - Toulouse (INSA Toulouse), Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Institut National des Sciences Appliquées - Toulouse (INSA Toulouse), Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Institut National des Sciences Appliquées (INSA)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), and Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Institut National des Sciences Appliquées (INSA)-Centre National de la Recherche Scientifique (CNRS)
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Condensed Matter - Strongly Correlated Electrons ,bose-einstein condensation ,Strongly Correlated Electrons (cond-mat.str-el) ,ground-state ,Physics ,phase-transitions ,FOS: Physical sciences ,ddc:530 ,Large scale facilities for research with photons neutrons and ions ,[PHYS.COND.CM-SCE]Physics [physics]/Condensed Matter [cond-mat]/Strongly Correlated Electrons [cond-mat.str-el] ,spin gap - Abstract
BaCuSi$_2$O$_6$ is a quasi-two-dimensional (2D) quantum antiferromagnet containing three different types of stacked, square-lattice bilayer hosting spin-1/2 dimers. Although this compound has been studied extensively over the last two decades, the critical applied magnetic field required to close the dimer spin gap and induce magnetic order, which exceeds 23 T, has to date precluded any kind of neutron scattering investigation. However, the HFM/EXED instrument at the Helmholtz-Zentrum Berlin made this possible at magnetic fields up to 25.9 T. Thus we have used HFM/EXED to investigate the field-induced ordered phase, in particular to look for quasi-2D physics arising from the layered structure and from the different bilayer types. From neutron diffraction data, we determined the global dependence of the magnetic order parameter on both magnetic field and temperature, finding a form consistent with 3D quantum critical scaling; from this we deduce that the quasi-2D interactions and nonuniform layering of BaCuSi$_2$O$_6$ are not anisotropic enough to induce hallmarks of 2D physics. From neutron spectroscopy data, we measured the dispersion of the strongly Zeeman-split magnetic excitations, finding good agreement with the zero-field interaction parameters of BaCuSi$_2$O$_6$. We conclude that HFM/EXED allowed a significant extension in the application of neutron scattering techniques to the field range above 20 T and in particular opened new horizons in the study of field-induced magnetic quantum phase transitions., 19 pages, 8 figures
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- 2022
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25. Ground-state long-range proton transfer controlled by proton-accepting ability of hydrogen-bonded chains: a theoretical study.
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Hua Fang
- Subjects
- *
GROUND state (Quantum mechanics) , *PROTON transfer reactions , *HEPTANE , *HYDROGEN bonding , *GAS phase reactions - Abstract
The ground-state triple proton transfer (GSTPT) reactions in HCOOH complexing with H2O, CH3OH, C2H5OH and mixed water-alcohol molecules were studied by quantum mechanical methods in the gas phase and in heptane. The triple proton transfer in HCOOH-S1-S2 (S1, S2 = H2O, CH3OH, C2H5OH) systems all occurred in an asynchronous but concerted protolysis mechanism. The formation pattern of the hydrogen-bonded chain was important to reduce the barrier height of the proton transfer process. When the hydrogen-bonded chain consisted of two identical CH3OH or C2H5OH molecules in the HCOOH-S1-S2 complexes, the GSTPT barrier height of HCOOH-S1-S2 decreased by more than 2 kcal mol-1 compared to that of HCOOH-H2O-H2O both in the gas phase and in heptane, because CH3OH and C2H5OH had larger proton-accepting abilities than had H2O. When the two solvent molecules in the hydrogen-bonded chain in the HCOOH-S1-S2 complexes were different, the barrier height of the proton transfer process varied depending on the proton-accepting ability (basicity) of the hydrogen-bonded chain. The bigger the proton-accepting ability (basicity) of the hydrogenbonded chain, the lower the barrier height of the proton transfer process. Mixed bridging solvent molecules could accumulate their proton-accepting abilities and thus speeded up proton transfer. The solvent effect evidently decreased the zero point energy-corrected barrier heights of HCOOH clusters and increased the asynchronicity of the proton transfer, while the proton transfer mechanisms did not change in heptane. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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- View/download PDF
26. A density-functional theory study of Au13, Pt13, Au12Pt and Pt12Au clusters.
- Author
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Sun, Jun, Xie, Xuefang, Cao, Biaobing, and Duan, Haiming
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DENSITY functional theory ,GENETIC algorithms ,IONIZATION energy ,ELECTRON affinity ,SEMICONDUCTOR doping ,FERMI energy ,CATALYTIC activity - Abstract
The geometrical and electronic properties of Pt 13 , Au 13 , Pt 12 Au and Au 12 Pt are investigated systematically by first-principle calculations combined with the genetic algorithm. A new candidate for the ground-state of Pt 13 is found, and there exists energetically closer isomers to the ground-state of the pure 13-atom clusters (especially for Au 13 ), but the isomerization to the ground-state of the pure clusters can be suppressed by doping. The calculated vertical ionization potentials (VIPs) and vertical electron affinities (VEAs) of all configurations considered of Au 13 are close to the experimental data, and the three dimensional cage-like structure is the closest one. Doping has small effect on VIPs and VEAs of the pure Pt 13 and Au 13 clusters. However, doping has significant effects on the distributions of d electrons near the Fermi energy, which may strongly influence the catalytic activities of the mixed clusters. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
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27. Neural-network quantum states for periodic systems in continuous space
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Gabriel Pescia, Jiequn Han, Alessandro Lovato, Jianfeng Lu, and Giuseppe Carleo
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monte-carlo ,Nuclear Theory (nucl-th) ,Quantum Physics ,Condensed Matter - Strongly Correlated Electrons ,ground-state ,Strongly Correlated Electrons (cond-mat.str-el) ,Nuclear Theory ,many-body problem ,FOS: Physical sciences ,General Physics and Astronomy ,Quantum Physics (quant-ph) - Abstract
We introduce a family of neural quantum states for the simulation of strongly interacting systems in the presence of spatial periodicity. Our variational state is parameterized in terms of a permutationally-invariant part described by the Deep Sets neural-network architecture. The input coordinates to the Deep Sets are periodically transformed such that they are suitable to directly describe periodic bosonic systems. We show example applications to both one and two-dimensional interacting quantum gases with Gaussian interactions, as well as to $^4$He confined in a one-dimensional geometry. For the one-dimensional systems we find very precise estimations of the ground-state energies and the radial distribution functions of the particles. In two dimensions we obtain good estimations of the ground-state energies, comparable to results obtained from more conventional methods., 8 pages, 6 figures
- Published
- 2022
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- View/download PDF
28. From Mice to Men
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Dorian Luijkx, Vinidhra Shankar, Clemens van Blitterswijk, Stefan Giselbrecht, and Erik Vrij
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Cell Biology ,SELF-ORGANIZATION ,blastoids ,MOUSE BLASTOCYSTS ,PRIMITIVE ENDODERM ,human blastocyst-like structures ,TROPHOBLAST ,DERIVATION ,MAINTENANCE ,embryonic development ,GROUND-STATE ,embryonic structures ,implantation ,pluripotent stem cells ,NAIVE PLURIPOTENCY ,CULTURE-CONDITIONS ,EMBRYONIC STEM-CELLS ,Developmental Biology - Abstract
Advances in the field of stem cell-based models have in recent years lead to the development of blastocyst-like structures termed blastoids. Blastoids can be used to study key events in mammalian pre-implantation development, as they mimic the blastocyst morphologically and transcriptionally, can progress to the post-implantation stage and can be generated in large numbers. Blastoids were originally developed using mouse pluripotent stem cells, and since several groups have successfully generated blastocyst models of the human system. Here we provide a comparison of the mouse and human protocols with the aim of deriving the core requirements for blastoid formation, discuss the models’ current ability to mimic blastocysts and give an outlook on potential future applications.
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- 2022
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29. Ground-State Structures of Hafnium Clusters.
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Wei Chun Ng, Thong Leng Lim, and Tiem Leong Yoon
- Subjects
- *
GROUND state energy , *HAFNIUM , *METAL clusters , *METAL microstructure , *SEARCH algorithms - Abstract
Hafnium (Hf) is a very large tetra-valence d-block element which is able to form relatively long covalent bond. Researchers are interested to search for substitution to silicon in the semi-conductor industry. We attempt to obtain the ground-state structures of small Hf clusters at both empirical and density-functional theory (DFT) levels. For calculations at the empirical level, charge-optimized many-body functional potential (COMB) is used. The lowest-energy structures are obtained via a novel global-minimum search algorithm known as parallel tempering Monte-Carlo Basin-Hopping and Genetic Algorithm (PTMBHGA). The virtue of using COMB potential for Hf cluster calculation lies in the fact that by including the charge optimization at the valence shells, we can encourage the formation of proper bond hybridization, and thus getting the correct bond order. The obtained structures are further optimized using DFT to ensure a close proximity to the ground-state. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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30. Quantum Monte Carlo simulations in the trimer basis: first-order transitions and thermal critical points in frustrated trilayer magnets
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Weber, Lukas, Honecker, Andreas, Normand, Bruce, Corboz, Philippe, Mila, Fr��d��ric, We��el, Stefan, Quantum Condensed Matter Theory (ITFA, IoP, FNWI), and ITFA (IoP, FNWI)
- Subjects
Condensed Matter - Strongly Correlated Electrons ,finite-size ,Strongly Correlated Electrons (cond-mat.str-el) ,ground-state ,Physics ,QC1-999 ,General Physics and Astronomy ,FOS: Physical sciences ,ddc:530 ,magnetization plateaus - Abstract
The phase diagrams of highly frustrated quantum spin systems can exhibit first-order quantum phase transitions and thermal critical points even in the absence of any long-ranged magnetic order. However, all unbiased numerical techniques for investigating frustrated quantum magnets face significant challenges, and for generic quantum Monte Carlo methods the challenge is the sign problem. Here we report on a general quantum Monte Carlo approach with a loop-update scheme that operates in any basis, and we show that, with an appropriate choice of basis, it allows us to study a frustrated model of coupled spin-1/2 trimers: simulations of the trilayer Heisenberg antiferromagnet in the spin-trimer basis are sign-problem-free when the intertrimer couplings are fully frustrated. This model features a first-order quantum phase transition, from which a line of first-order transitions emerges at finite temperatures and terminates in a thermal critical point. The trimer unit cell hosts an internal degree of freedom that can be controlled to induce an extensive entropy jump at the quantum transition, which alters the shape of the first-order line. We explore the consequences for the thermal properties in the vicinity of the critical point, which include profound changes in the lines of maxima defined by the specific heat. Our findings reveal trimer quantum magnets as fundamental systems capturing in full the complex thermal physics of the strongly frustrated regime., 27 pages, 10 figures, Resubmission to SciPost
- Published
- 2022
- Full Text
- View/download PDF
31. High-Spin (S = 1) Blatter-Based Diradical with Robust Stability and Electrical Conductivity
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Shuyang Zhang, Maren Pink, Tobias Junghoefer, Wenchao Zhao, Sheng-Ning Hsu, Suchada Rajca, Arrigo Calzolari, Bryan W. Boudouris, Maria Benedetta Casu, and Andrzej Rajca
- Subjects
Colloid and Surface Chemistry ,General Chemistry ,Physics::Chemical Physics ,Biochemistry ,Catalysis ,SLOW BETA-PROCESS ,ORGANIC RADICALS ,GROUND-STATE ,NITRONYL NITROXIDE ,NON-KEKULE ,MOLECULES ,GLASS ,CONJUGATION ,TEMPERATURE - Abstract
Triplet ground-state organic molecules are of interest with respect to several emerging technologies but usually show limited stability, especially as thin films. We report an organic diradical, consisting of two Blatter radicals, that possesses a triplet ground state with a singlet-triplet energy gap, ?EST? 0.4-0.5 kcal mol-1(2J/k ? 220-275 K). The diradical possesses robust thermal stability, with an onset of decomposition above 264 °C (TGA). In toluene/chloroform, glassy matrix, and fluid solution, an equilibrium between two conformations with ?EST? 0.4 kcal mol-1and ?EST? -0.7 kcal mol-1is observed, favoring the triplet ground state over the singlet ground-state conformation in the 110-330 K temperature range. The diradical with the triplet ground-state conformation is found exclusively in crystals and in a polystyrene matrix. The crystalline neutral diradical is a good electrical conductor with conductivity comparable to the thoroughly optimized bis(thiazolyl)-related monoradicals. This is surprising because the triplet ground state implies that the underlying ?-system is cross-conjugated and thus is not compatible with either good conductance or electron delocalization. The diradical is evaporated under ultra-high vacuum to form thin films, which are stable in air for at least 18 h, as demonstrated by X-ray photoelectron and electron paramagnetic resonance (EPR) spectroscopies
- Published
- 2022
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32. Conformal and chiral phase transitions in Rydberg chains
- Author
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Ivo A. Maceira, Natalia Chepiga, and Frédéric Mila
- Subjects
asymmetric clock ,monte-carlo ,density ,model ,Strongly Correlated Electrons (cond-mat.str-el) ,matrix renormalization-group ,incommensurate ,General Physics and Astronomy ,FOS: Physical sciences ,domain-walls ,Condensed Matter - Strongly Correlated Electrons ,ground-state ,commensurate phases ,lattice - Abstract
Using density matrix renormalization group simulations on open chains, we map out the wave vector in the incommensurate disordered phase of a realistic model of Rydberg chains with 1/r6 interactions, and we locate and characterize the points along the commensurate lines where the transition out of the period 3 and 4 phases is conformal. We confirm that it is three-state Potts for the period-3 phase, and we show that it is Ashkin-Teller with v similar or equal to 0.80 for the period-4 phase. We further show that close to these points, the transition is still continuous, but with a completely different scaling of the wave vector, in agreement with a chiral transition. Finally, we propose to use the conformal points as benchmarks for Kibble-Zurek experiments, defining a roadmap towards a conclusive identification of the chiral universality class.
- Published
- 2022
- Full Text
- View/download PDF
33. Etude mathématique et numérique d'un système de Gross-Clark-Schrödinger
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Alhelou, Joe, Institut de Mathématiques de Toulouse UMR5219 (IMT), Université Toulouse Capitole (UT Capitole), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National des Sciences Appliquées - Toulouse (INSA Toulouse), Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Institut National des Sciences Appliquées (INSA)-Université Toulouse - Jean Jaurès (UT2J), Université de Toulouse (UT)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS), Université Paul Sabatier - Toulouse III, Mihai Maris, and David Chiron
- Subjects
Minimiseurs ,Minimisation sous contraintes ,Ondes progressives ,Gross-Clark system ,Ground-state ,Système de Gross-Clark ,[MATH.MATH-AP]Mathematics [math]/Analysis of PDEs [math.AP] ,Vortices ,Minimizers ,Travelling waves ,Minimization under constraints ,Vortex ,[MATH.MATH-NA]Mathematics [math]/Numerical Analysis [math.NA] - Abstract
This thesis deals with the study of a Gross-Clark-Schrödinger system which models the motion of an impurity in a Bose condensate. We have first shown that the Cauchy problem for this system is globally well posed in the associated energy space. The approach used is quite classical and is based on Strichartz type estimates and on a fixed point theorem. In a second step, we are interested in the travelling waves of this system. These special solutions have been studied since 1974 by physicists using formal asymptotic developments and some numerical simulations. In one dimension space the existence of these solutions and some properties have been rigorously established in 2006. Despite several attempts, there is no rigorous proof in the literature of the existence of travelling waves in dimension greater than or equal to two. We have used several approaches to show the existence, based on ideas and tools recently developed in Calculus of Variations. One of them consists in minimizing the energy associated to the system under two constraints, at constant mass and constant momentum. We have shown that minimizing travelling waves exist for any pair (moment, mass) that verifies a strict subadditivity condition of the minimal energy as a function of two variables. In parallel, we have performed numerical simulations that have well highlighted the travelling waves in the cases that correspond to the physical applications, we have obtained their profiles and we have calculated their energy levels. We have also studied other types of special solutions, including zero-momentum ground states and bubble-vortex solutions.; Cette thèse porte sur l'étude d'un système de Gross-Clark-Schrödinger qui modélise le mouvement d'une impureté dans un condensat de Bose. Nous avons d'abord montré que le problème de Cauchy pour ce système est globalement bien posé dans l'espace d'énergie associé. L'approche utilisée est assez classique et est basée sur des estimations de type Strichartz ainsi que sur l'utilisation d'un théorème de point fixe. Dans un second temps nous nous sommes intéressés aux ondes progressives de ce système. Ces solutions spéciales ont été étudiées dès 1974 par des physiciens à l'aide des développements asymptotiques formels et de quelques simulations numériques. En dimension un d'espace l'existence de ces solutions et quelques propriétés ont été établies rigoureusement en 2006. Malgré plusieurs tentatives, il n'existe dans la littérature aucune preuve rigoureuse de l'existence des ondes progressives en dimension supérieure ou égale à deux. Nous avons utilisé plusieurs approches pour montrer l'existence, basées sur des idées et des outils récemment développés en Calcul des Variations. Une d'elles consiste à minimiser l'énergie associée au système sous deux contraintes, à masse constante et à moment constant. Nous avons montré que les ondes progressives minimisantes existent pour tout couple (moment, masse) qui vérifie une condition de stricte sous-additivité de l'énergie minimale comme fonction de deux variables. En parallèle, nous avons effectué des simulations numériques qui ont bien mis en évidence les ondes progressives dans les cas qui correspondent aux applications physiques, nous avons obtenu leurs profils et nous avons calculé leurs niveaux d'énergie. Nous avons étudié également d'autres types de solutions spéciales, notamment les états fondamentaux de moment nul et les solutions de type bulle-vortex.
- Published
- 2021
34. Changes in Cell Morphology and Actin Organization in Embryonic Stem Cells Cultured under Different Conditions
- Author
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Kasper Graves Hvid, Joshua M. Brickman, Lene B. Oddershede, Younes Farhangi Barooji, Irene Istúriz Petitjean, and Poul Martin Bendix
- Subjects
CORTEX ,Morphology (linguistics) ,actin cytoskeleton ,QH301-705.5 ,Cell ,CYTOSKELETON ,cell culturing ,Cell morphology ,Article ,OPTICAL RECONSTRUCTION MICROSCOPY ,Micro rheology ,Mice ,Imaging, Three-Dimensional ,Cell polarity ,medicine ,Animals ,micro-rheology ,Biology (General) ,Cytoskeleton ,Cell Shape ,Cells, Cultured ,Actin ,primed embryonic stem cells ,Cell Proliferation ,Super-resolution microscopy ,Viscosity ,Chemistry ,optical tweezers ,VISCOELASTICITY ,Mouse Embryonic Stem Cells ,General Medicine ,NAIVE ,embryonic stem cells ,Actin cytoskeleton ,Embryonic stem cell ,Actins ,Elasticity ,Cell biology ,medicine.anatomical_structure ,super-resolution microscopy (STORM) ,Optical tweezers ,Cell culture ,GROUND-STATE ,Nanoparticles ,physical_sciences_other - Abstract
The cellular cytoskeleton provides the cell with a mechanical rigidity that allows mechanical interaction between cells and the extracellular environment. The actin structure plays a key role in mechanical events such as motility or the establishment of cell polarity. From the earliest stages of development, as represented by the ex vivo expansion of naïve embryonic stem cells (ESCs), the critical mechanical role of the actin structure is becoming recognized as a vital cue for correct segregation and lineage control of cells and as a regulatory structure that controls several transcription factors. Naïve ESCs have a characteristic morphology, and the ultrastructure that underlies this condition remains to be further investigated. Here, we investigate the 3D actin cytoskeleton of naïve mouse ESCs using super-resolution optical reconstruction microscopy (STORM). We investigate the morphological, cytoskeletal, and mechanical changes in cells cultured in 2i or Serum/LIF media reflecting, respectively, a homogeneous preimplantation cell state and a state that is closer to embarking on differentiation. STORM imaging showed that the peripheral actin structure undergoes a dramatic change between the two culturing conditions. We also detected micro-rheological differences in the cell periphery between the cells cultured in these two media correlating well with the observed nano-architecture of the ESCs in the two different culture conditions. These results pave the way for linking physical properties and cytoskeletal architecture to cell morphology during early development.
- Published
- 2021
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35. σ‐Noninnocence: Masked Phenyl‐Cation Transfer at Formal Ni IV
- Author
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Steen, Jelte S., Knizia, Gerald, Klein, Johannes E. M. N., and Molecular Inorganic Chemistry
- Subjects
homolysis ,trifluoromethyl ,OXIDATION-STATE ,Oxidation States ,010402 general chemistry ,01 natural sciences ,Medicinal chemistry ,Catalysis ,Reductive elimination ,Coordination complex ,chemistry.chemical_compound ,Oxidation state ,ligand-field inversion ,COORDINATION CHEMISTRY ,Research Articles ,Organometallic chemistry ,chemistry.chemical_classification ,010405 organic chemistry ,Chemistry ,Reaction step ,Aryl ,H BOND ACTIVATION ,General Chemistry ,General Medicine ,radicals ,REACTIVITY ,coinage metals ,0104 chemical sciences ,Homolysis ,ALKYL-HALIDES ,GROUND-STATE ,METAL ,Electrophile ,COMPLEXES ,LIGANDS ,Research Article - Abstract
Reductive elimination is an elementary organometallic reaction step involving a formal oxidation state change of -2 at a transition-metal center. For a series of formal high-valent Ni-IV complexes, aryl-CF3 bond-forming reductive elimination was reported to occur readily (Bour et al. J. Am. Chem. Soc. 2015, 137, 8034-8037). We report a computational analysis of this reaction and find that, unexpectedly, the formal Ni-IV centers are better described as approaching a +II oxidation state, originating from highly covalent metal-ligand bonds, a phenomenon attributable to sigma-noninnocence. A direct consequence is that the elimination of aryl-CF3 products occurs in an essentially redox-neutral fashion, as opposed to a reductive elimination. This is supported by an electron flow analysis which shows that an anionic CF3 group is transferred to an electrophilic aryl group. The uncovered role of sigma-noninnocence in metal-ligand bonding, and of an essentially redox-neutral elimination as an elementary organometallic reaction step, may constitute concepts of broad relevance to organometallic chemistry.
- Published
- 2019
- Full Text
- View/download PDF
36. Positional Isomers of Isocyanoazulenes as Axial Ligands Coordinated to Ruthenium(II) Tetraphenylporphyrin: Fine-Tuning Redox and Optical Profiles
- Author
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Rashid R. Valiev, Mason D. Hart, Victor N. Nemykin, Mahtab Fathi-Rasekh, Yuriy V. Zatsikha, Toshinori Nakakita, Mikhail V. Barybin, Gregory T. Rohde, and Department of Chemistry
- Subjects
116 Chemical sciences ,DENSITY FUNCTIONALS ,chemistry.chemical_element ,010402 general chemistry ,01 natural sciences ,Redox ,Inorganic Chemistry ,chemistry.chemical_compound ,лиганды ,позиционные изомеры ,Tetraphenylporphyrin ,Structural isomer ,Physical and Theoretical Chemistry ,тетрафенилпорфирин ,BASIS-SETS ,рутений ,010405 organic chemistry ,Chemistry ,LOW-SPIN ,0104 chemical sciences ,Ruthenium ,ELECTRONIC-STRUCTURE ,Crystallography ,MAGNETIC CIRCULAR-DICHROISM ,IRON(II) PHTHALOCYANINE ,GROUND-STATE ,PORPHYRIN ,COMPLEXES ,ISOCYANIDE - Abstract
Two isomeric ruthenium(II)/5,10,15,20-tetraphe-nylporphyrin complexes featuring axially coordinated redox-active, low-optical gap 2- or 6-isocyanoazulene ligands have been isolated and characterized by NMR, UV-vis, and magnetic circular dichroism (MCD) spectroscopic methods, high-resolution mass spectrometry, and single-crystal X-ray crystallography. The UV-vis and MCD spectra support the presence of the low-energy, azulene-centered transitions in the Q band region of the porphyrin chromophore. The first coordination sphere in new L2RuTPP complexes reflects compressed tetragonal geometry. The redox properties of the new compounds were assessed by electrochemical and spectroelectrochemical means and correlated with the electronic structures predicted by density functional theory and CASSCF calculations. Both experimental and theoretical data are consistent with the first two reduction processes involving the axial azulenic ligands, whereas the oxidation profile (in the direction of increasing potential) is exerted by the ruthenium ion, the porphyrin core, and the axial azulenic moieties.
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- 2019
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37. Changes in Cell Morphology and Actin Organization in Embryonic Stem Cells Cultured under Different Conditions
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Barooji, Younes F., Hvid, Kasper G., Petitjean, Irene Isturiz, Brickman, Joshua M., Oddershede, Lene B., Bendix, Poul M., Barooji, Younes F., Hvid, Kasper G., Petitjean, Irene Isturiz, Brickman, Joshua M., Oddershede, Lene B., and Bendix, Poul M.
- Abstract
The cellular cytoskeleton provides the cell with a mechanical rigidity that allows mechanical interaction between cells and the extracellular environment. The actin structure plays a key role in mechanical events such as motility or the establishment of cell polarity. From the earliest stages of development, as represented by the ex vivo expansion of naive embryonic stem cells (ESCs), the critical mechanical role of the actin structure is becoming recognized as a vital cue for correct segregation and lineage control of cells and as a regulatory structure that controls several transcription factors. Naive ESCs have a characteristic morphology, and the ultrastructure that underlies this condition remains to be further investigated. Here, we investigate the 3D actin cytoskeleton of naive mouse ESCs using super-resolution optical reconstruction microscopy (STORM). We investigate the morphological, cytoskeletal, and mechanical changes in cells cultured in 2i or Serum/LIF media reflecting, respectively, a homogeneous preimplantation cell state and a state that is closer to embarking on differentiation. STORM imaging showed that the peripheral actin structure undergoes a dramatic change between the two culturing conditions. We also detected micro-rheological differences in the cell periphery between the cells cultured in these two media correlating well with the observed nano-architecture of the ESCs in the two different culture conditions. These results pave the way for linking physical properties and cytoskeletal architecture to cell morphology during early development.
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- 2021
38. Revealing three-dimensional quantum criticality by Sr substitution in Han purple
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Allenspach, Stephan, Puphal, Pascal, Link, Joosep, Heinmaa, Ivo, Pomjakushina, Ekaterina, Krellner, Cornelius, Lass, Jakob, Tucker, Gregory S., Niedermayer, Christof, Imajo, Shusaku, Kohama, Yoshimitsu, Kindo, Koichi, Kramer, Steffen, Horvatic, Mladen, Jaime, Marcelo, Madsen, Alexander, Mira, Antonietta, Laflorencie, Nicolas, Mila, Frederic, Normand, Bruce, Ruegg, Christian, Stern, Raivo, Weickert, Franziska, Allenspach, Stephan, Puphal, Pascal, Link, Joosep, Heinmaa, Ivo, Pomjakushina, Ekaterina, Krellner, Cornelius, Lass, Jakob, Tucker, Gregory S., Niedermayer, Christof, Imajo, Shusaku, Kohama, Yoshimitsu, Kindo, Koichi, Kramer, Steffen, Horvatic, Mladen, Jaime, Marcelo, Madsen, Alexander, Mira, Antonietta, Laflorencie, Nicolas, Mila, Frederic, Normand, Bruce, Ruegg, Christian, Stern, Raivo, and Weickert, Franziska
- Abstract
Classical and quantum phase transitions (QPTs), with their accompanying concepts of criticality and universality, are a cornerstone of statistical thermodynamics. An excellent example of a controlled QPT is the field-induced ordering of a gapped quantum magnet. Although numerous "quasi-one-dimensional" coupled spin-chain and -ladder materials are known whose ordering transition is three-dimensional (3D), quasi-two-dimensional (2D) systems are special for multiple reasons. Motivated by the ancient pigment Han purple (BaCuSi2O6), a quasi-2D material displaying anomalous critical properties, we present a complete analysis of Ba0.9Sr0.1CuSi2O6. We measure the zero-field magnetic excitations by neutron spectroscopy and deduce the spin Hamiltonian. We probe the field-induced transition by combining magnetization, specific-heat, torque, and magnetocalorimetric measurements with nuclear magnetic resonance studies near the QPT. With a Bayesian statistical analysis and large-scale Quantum Monte Carlo simulations, we demonstrate unambiguously that observable 3D quantum critical scaling is restored by the structural simplification arising from light Sr substitution in Han purple.
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- 2021
39. The ALMA-PILS survey:first detection of the unsaturated 3-carbon molecules Propenal (C2H3CHO) and Propylene (C3H6) towards IRAS 16293-2422 B
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Manigand, S., Coutens, A., Loison, J. -C., Wakelam, V., Calcutt, H., Mueller, H. S. P., Jorgensen, J. K., Taquet, V., Wampfler, S. F., Bourke, T. L., Kulterer, B. M., van Dishoeck, E. F., Drozdovskaya, M. N., Ligterink, N. F. W., Manigand, S., Coutens, A., Loison, J. -C., Wakelam, V., Calcutt, H., Mueller, H. S. P., Jorgensen, J. K., Taquet, V., Wampfler, S. F., Bourke, T. L., Kulterer, B. M., van Dishoeck, E. F., Drozdovskaya, M. N., and Ligterink, N. F. W.
- Abstract
Context. Complex organic molecules with three carbon atoms are found in the earliest stages of star formation. In particular, propenal (C2H3CHO) is a species of interest due to its implication in the formation of more complex species and even biotic molecules.Aims. This study aims to search for the presence of C2H3CHO and other three-carbon species such as propylene (C3H6) in the hot corino region of the low-mass protostellar binary IRAS 16293-2422 to understand their formation pathways.Methods. We use ALMA observations in Band 6 and 7 from various surveys to search for the presence of C3H6 and C2H3CHO towards the protostar IRAS 16293-2422 B (IRAS 16293B). The identification of the species and the estimates of the column densities and excitation temperatures are carried out by modeling the observed spectrum under the assumption of local thermodynamical equilibrium.Results. We report the detection of both C3H6 and C2H3CHO towards IRAS 16293B, however, no unblended lines were found towards the other component of the binary system, IRAS 16293A. We derive column density upper limits for C3H8, HCCCHO, n-C3H7OH, i-C3H7OH, C3O, and cis-HC(O)CHO towards IRAS 16293B. We then use a three-phase chemical model to simulate the formation of these species in a typical prestellar environment followed by its hydrodynamical collapse until the birth of the central protostar. Different formation paths, such as successive hydrogenation and radical-radical additions on grain surfaces, are tested and compared to the observational results in a number of different simulations, to assess which are the dominant formation mechanisms in the most embedded region of the protostar.Conclusions. The simulations reproduce the abundances within one order of magnitude from those observed towards IRAS 16293B, with the best agreement found for a rate of 10(-12) cm(3) s(-1) for the gas-phase reaction C-3 + O -> C-2 + CO. Successive hydrogenations of C-3, HC(O)CHO, and CH3
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- 2021
40. Subspace adaptivity in Rosenbrock-Krylov methods for the time integration of initial value problems
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Tranquilli, Paul, Glandon, Ross, Sandu, Adrian, Tranquilli, Paul, Glandon, Ross, and Sandu, Adrian
- Abstract
The Rosenbrock–Krylov family of time integration schemes is an extension of Rosenbrock-W methods that employs a specific Krylov based approximation of the linear system solutions arising within each stage of the integrator. This work proposes an extension of Rosenbrock–Krylov methods to address stability questions which arise for methods making use of inexact linear system solution strategies. Two approaches for improving the stability and efficiency of Rosenbrock–Krylov methods are proposed, one through direct control of linear system residuals and the second through a novel extension of the underlying Krylov space to include stage right hand side vectors. Rosenbrock–Krylov methods employing the new approaches show a substantial improvement in computational efficiency relative to prior implementations.
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- 2021
41. Revealing three-dimensional quantum criticality by Sr substitution in Han purple
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Alexander Madsen, Christian Rüegg, Pascal Puphal, Stephan Allenspach, Nicolas Laflorencie, Jakob Lass, Ivo Heinmaa, Shusaku Imajo, Antonietta Mira, Raivo Stern, Joosep Link, Mladen Horvatić, Frédéric Mila, Franziska Weickert, G. S. Tucker, Cornelius Krellner, Bruce Normand, Steffen Krämer, Marcelo Jaime, Christof Niedermayer, Koichi Kindo, Yoshimitsu Kohama, Ekaterina Pomjakushina, Fermions Fortement Corrélés (LPT) (FFC), Laboratoire de Physique Théorique (LPT), Institut de Recherche sur les Systèmes Atomiques et Moléculaires Complexes (IRSAMC), Institut National des Sciences Appliquées - Toulouse (INSA Toulouse), Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut National des Sciences Appliquées - Toulouse (INSA Toulouse), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche sur les Systèmes Atomiques et Moléculaires Complexes (IRSAMC), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS), Laboratoire national des champs magnétiques intenses - Grenoble (LNCMI-G ), Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes (UGA), Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Fédération de recherche « Matière et interactions » (FeRMI), Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Institut National des Sciences Appliquées - Toulouse (INSA Toulouse), Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Institut National des Sciences Appliquées (INSA)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Institut National des Sciences Appliquées (INSA)-Centre National de la Recherche Scientifique (CNRS), ANR-16-CE30-0023,THERMOLOC,Thermalisation et localisation dans les systèmes à N corps: compréhension théorique et intêret experimental(2016), and ANR-19-CE30-0013,GLADYS,De la nature vitreuse des systèmes quantiques désordonnés(2019)
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Phase transition ,bose-einstein condensation ,Dimer ,FOS: Physical sciences ,02 engineering and technology ,01 natural sciences ,law.invention ,chemistry.chemical_compound ,Condensed Matter - Strongly Correlated Electrons ,ground-state ,law ,0103 physical sciences ,Spin model ,BOSE-EINSTEIN CONDENSATION ,Antiferromagnetism ,magnetization plateaus ,FIELD ,[PHYS.COND]Physics [physics]/Condensed Matter [cond-mat] ,010306 general physics ,TEMPERATURE ,Quantum ,ComputingMilieux_MISCELLANEOUS ,antiferromagnet ,Physics ,model ,Strongly Correlated Electrons (cond-mat.str-el) ,phase-transitions ,Substitution (logic) ,ANTIFERROMAGNET ,temperature ,021001 nanoscience & nanotechnology ,field ,MAGNETIZATION PLATEAUS ,MODEL ,Crystallography ,chemistry ,GROUND-STATE ,PHASE-TRANSITIONS ,[PHYS.COND.CM-SCE]Physics [physics]/Condensed Matter [cond-mat]/Strongly Correlated Electrons [cond-mat.str-el] ,0210 nano-technology ,Ground state ,Bose–Einstein condensate - Abstract
Classical and quantum phase transitions (QPTs), with their accompanying concepts of criticality and universality, are a cornerstone of statistical thermodynamics. An exemplary controlled QPT is the field-induced magnetic ordering of a gapped quantum magnet. Although numerous "quasi-one-dimensional" coupled spin-chain and -ladder materials are known whose ordering transition is three-dimensional (3D), quasi-2D systems are special for several physical reasons. Motivated by the ancient pigment Han Purple (BaCuSi$_{2}$O$_{6}$), a quasi-2D material displaying anomalous critical properties, we present a complete analysis of Ba$_{0.9}$Sr$_{0.1}$CuSi$_{2}$O$_{6}$. We measure the zero-field magnetic excitations by neutron spectroscopy and deduce the magnetic Hamiltonian. We probe the field-induced transition by combining magnetization, specific-heat, torque and magnetocalorimetric measurements with low-temperature nuclear magnetic resonance studies near the QPT. By a Bayesian statistical analysis and large-scale Quantum Monte Carlo simulations, we demonstrate unambiguously that observable 3D quantum critical scaling is restored by the structural simplification arising from light Sr-substitution in Han Purple., 19 pages, 5 figures
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- 2021
- Full Text
- View/download PDF
42. Ground-state and rotational properties of a two-component Bose–Einstein condensate in a harmonic plus quartic trap.
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Chen, Guang-Ping, Zhang, Zhi-Yuan, Dong, Biao, Wang, Lin-Xue, Zhang, Xiao-Fei, and Zhang, Shou-Gang
- Subjects
- *
BOSE-Einstein condensation , *GROUND state (Quantum mechanics) , *NUMERICAL analysis , *QUANTUM phase transitions , *FLUX-line lattice - Abstract
We consider a two-component Bose–Einstein condensate under extreme elongation in a harmonic plus quartic trap. The ground-state and rotational properties of such a system are numerically studied as a function of intra- and inter-component contact interactions, and of the rotational frequency. For the nonrotational case, we obtain the exact phase diagram showing the ground-state density distributions as contact-interactions varied. For both slowly and ultrarapidly rotational cases, we demonstrate that the vortex configurations depend strongly on the relative strength of the contact interactions, as well as on the rotational frequency. The controllable system may be used to investigate the interplay of interaction and rotation, and to explore more exotic quantum phases. [ABSTRACT FROM AUTHOR]
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- 2015
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43. Ultrafast Frustration-Breaking and Magnetophononic Driving of Singlet Excitations in a Quantum Magnet
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F. Giorgianni, B. Wehinger, S. Allenspach, N. Colonna, C. Vicario, P. Puphal, E. Pomjakushina, B. Normand, and Ch. Rüegg
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displacive excitation ,compound ,Strongly Correlated Electrons (cond-mat.str-el) ,FOS: Physical sciences ,spin ,matter ,Condensed Matter - Strongly Correlated Electrons ,ground-state ,Condensed Matter::Strongly Correlated Electrons ,mott transition ,light ,phonon ,driven ,srcu2(bo3)(2) - Abstract
Ideal magnetic frustration forms the basis for the emergence of exotic quantum spin states that are entirely nonmagnetic. Such singlet spin states are the defining feature of the Shastry-Sutherland model, and of its faithful materials realization in the quantum antiferromagnet SrCu$_2$(BO$_3$)$_2$. To address these states on ultrafast timescales, despite their lack of any microscopic order parameter, we introduce a nonlinear magnetophononic mechanism to alter the quantum spin dynamics by driving multiple optical phonon modes coherently and simultaneously. We apply intense terahertz pulses to create a nonequilibrium modulation of the magnetic interactions that breaks the ideal frustration of SrCu$_2$(BO$_3$)$_2$, such that previously forbidden physics can be driven in a coherent manner. Specifically, this driving populates a purely magnetic excitation, the singlet branch of the two-triplon bound state, by resonance with the difference frequency of two pumped phonons. Our results demonstrate how light-driven phonons can be used for the ultrafast and selective manipulation of interactions in condensed matter, even at frequencies far from those of the pump spectrum, offering valuable additional capabilities for the dynamical control of quantum many-body phenomena., 21 pages, 13 figures
- Published
- 2021
44. The ALMA-PILS survey: first detection of the unsaturated 3-carbon molecules Propenal (C 2 H 3 CHO) and Propylene (C 3 H 6 ) towards IRAS 16293–2422 B
- Author
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Beatrice M. Kulterer, Susanne F. Wampfler, Jes K. Jørgensen, Niels F. W. Ligterink, Vianney Taquet, Holger S. P. Müller, S. Manigand, T. L. Bourke, Maria Drozdovskaya, Jean-Christophe Loison, Hannah Calcutt, E. F. van Dishoeck, Audrey Coutens, Valentine Wakelam, Laboratoire d'Astrophysique de Bordeaux [Pessac] (LAB), Université de Bordeaux (UB)-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS), and Wakelam, Valentine
- Subjects
Astrophysics - astrophysics of galaxies ,Astrophysics ,[SDU.ASTR] Sciences of the Universe [physics]/Astrophysics [astro-ph] ,01 natural sciences ,COLOGNE DATABASE ,low-mass [stars] ,POTENTIAL FUNCTION ,Binary system ,010303 astronomy & astrophysics ,Astrochemistry ,Physics ,[SDU.ASTR]Sciences of the Universe [physics]/Astrophysics [astro-ph] ,astrochemistry ,520 Astronomy ,INTERSTELLAR CHEMISTRY ,ISM: molecules ,3. Good health ,MILLIMETER-WAVE ,INTERNAL-ROTATION ,ISM: individual objects: IRAS 16293{\textendash}2422 ,GROUND-STATE ,530 Physics ,FOS: Physical sciences ,chemistry.chemical_element ,Context (language use) ,ETHYLENE-GLYCOL ,010402 general chemistry ,Astrophysics - solar and stellar astrophysics ,MICROWAVE-SPECTRUM ,Stars: protostars ,0103 physical sciences ,Protostar ,Molecule ,Stars: low-mass ,ISM [submillimeter] ,Submillimeter: ISM ,protostars [stars] ,molecules [ISM] ,Solar and Stellar Astrophysics (astro-ph.SR) ,Star formation ,Astronomy and Astrophysics ,0104 chemical sciences ,individual objects: IRAS 16293-2422 [ISM] ,chemistry ,13. Climate action ,Space and Planetary Science ,Astrophysics of Galaxies (astro-ph.GA) ,ORGANIC-MOLECULES ,Carbon ,Order of magnitude ,SUBMILLIMETER-WAVE SPECTRUM - Abstract
Complex organic molecules with three carbon atoms are found in the earliest stages of star formation. In particular, propenal (C$_2$H$_3$CHO) is a species of interest due to its implication in the formation of more complex species and even biotic molecules. This study aims to search for the presence of C$_2$H$_3$CHO and other three-carbon species such as propylene (C$_3$H$_6$) in the hot corino region of the low-mass protostellar binary IRAS 16293--2422 to understand their formation pathways. We use ALMA observations in Band 6 and 7 from various surveys to search for the presence of C$_3$H$_6$ and C$_2$H$_3$CHO towards the protostar IRAS 16293--2422 B (IRAS 16293B). We report the detection of both C$_3$H$_6$ and C$_2$H$_3$CHO towards IRAS 16293B, however, no unblended lines were found towards the other component of the binary system, IRAS 16293A. We derive column density upper limits for C$_3$H$_8$, HCCCHO, n-C$_3$H$_7$OH, i-C$_3$H$_7$OH, C$_3$O, and cis-HC(O)CHO towards IRAS 16293B. We then use a three-phase chemical model to simulate the formation of these species in a typical prestellar environment followed by its hydrodynamical collapse until the birth of the central protostar. Different formation paths, such as successive hydrogenation and radical-radical additions on grain surfaces, are tested and compared to the observational results. The simulations reproduce the abundances within one order of magnitude from those observed towards IRAS 16293B, with the best agreement found for a rate of $10^{-12}$ cm$^3$ s$^{-1}$ for the gas-phase reaction C$_3$ + O $\rightarrow$ C$_2$ + CO. Successive hydrogenations of C$_3$, HC(O)CHO, and CH$_3$OCHO on grain surfaces are a major and crucial formation route of complex organics molecules, whereas both successive hydrogenation pathways and radical-radical addition reactions contribute to the formation of C$_2$H$_5$CHO., Comment: Accepted for publication in A&A. 24 pages, 17 figures
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- 2021
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45. Quasiparticle Effective Mass of the Three-Dimensional Fermi Liquid by Quantum Monte Carlo
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W. M. C. Foulkes, Sam Azadi, Neil Drummond, and Partnership for Advanced Computing in Europe AISBL
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General Physics ,Quantum Monte Carlo ,Physics, Multidisciplinary ,BAND-STRUCTURE ,General Physics and Astronomy ,FOS: Physical sciences ,ELECTRON-GAS ,Electron ,09 Engineering ,Condensed Matter - Strongly Correlated Electrons ,Paramagnetism ,Effective mass (solid-state physics) ,Condensed Matter::Superconductivity ,PHOTOEMISSION ,01 Mathematical Sciences ,Physics ,Science & Technology ,02 Physical Sciences ,Condensed matter physics ,Strongly Correlated Electrons (cond-mat.str-el) ,Condensed Matter::Mesoscopic Systems and Quantum Hall Effect ,SELF-ENERGY ,Condensed Matter - Other Condensed Matter ,cond-mat.other ,GROUND-STATE ,Physical Sciences ,Quasiparticle ,Diffusion Monte Carlo ,Condensed Matter::Strongly Correlated Electrons ,Fermi liquid theory ,cond-mat.str-el ,Fermi gas ,Other Condensed Matter (cond-mat.other) - Abstract
According to Landau's Fermi liquid theory, the main properties of the quasiparticle excitations of an electron gas are embodied in the effective mass $m^*$, which determines the energy of a single quasiparticle, and the Landau interaction function, which indicates how the energy of a quasiparticle is modified by the presence of other quasiparticles. This simple paradigm underlies most of our current understanding of the physical and chemical behavior of metallic systems. The quasiparticle effective mass of the three-dimensional homogeneous electron gas has been the subject of theoretical controversy and there is a lack of experimental data. In this work, we deploy diffusion Monte Carlo (DMC) methods to calculate $m^*$ as a function of density for paramagnetic and ferromagnetic three-dimensional homogeneous electron gases. The DMC results indicate that $m^*$ decreases when the density is reduced, especially in the ferromagnetic case. The DMC quasiparticle energy bands exclude the possibility of a reduction in the occupied bandwidth relative to that of the free-electron model at density parameter $r_s=4$, which corresponds to Na metal., Comment: Accepted for the publication
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- 2021
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46. Solution of universal nonrelativistic nuclear DFT equations in the Cartesian deformed harmonic-oscillator basis. (IX) HFODD (v3.06h) : a new version of the program
- Author
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J. Bonnard, Leszek Próchniak, Y. Shi, Michaël Bender, Andrea Idini, Wojciech Satula, Y. Gao, A. M. Romero, Jacek Dobaczewski, L. F. Yu, P. Becker, K. Bennaceur, T. R. Werner, Markus Kortelainen, P. Bączyk, M. Konieczka, Institut de Physique Nucléaire de Lyon (IPNL), Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National de Physique Nucléaire et de Physique des Particules du CNRS (IN2P3), and Helsinki Institute of Physics
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Nuclear and High Energy Physics ,[PHYS.NUCL]Physics [physics]/Nuclear Theory [nucl-th] ,Nuclear Theory ,harmonic-oscillator basis ,MEAN-FIELD ,FOS: Physical sciences ,Pfaffian ,PART ,114 Physical sciences ,01 natural sciences ,Separable space ,law.invention ,Nuclear Theory (nucl-th) ,värähtelyt ,law ,FINITE-RANGE ,BOGOLYUBOV EQUATIONS ,0103 physical sciences ,Cartesian coordinate system ,Tensor ,nuclear DFT ,010306 general physics ,Harmonic oscillator ,Mathematical physics ,PARAMETRIZATION ,Physics ,Basis (linear algebra) ,010308 nuclear & particles physics ,tiheysfunktionaaliteoria ,tietokoneohjelmat ,Parity (physics) ,HARTREE-FOCK EQUATIONS ,HFODD ,GROUND-STATE ,Pairing ,numeerinen analyysi ,FORCES ,ydinfysiikka - Abstract
We describe the new version (v3.06h) of the code HFODD that solves the universal nonrelativistic nuclear DFT Hartree-Fock or Hartree-Fock-Bogolyubov problem by using the Cartesian deformed harmonic-oscillator basis. In the new version, we implemented the following new features: (i) zero-range three- and four-body central terms, (ii) zero-range three-body gradient terms, (iii) zero-range tensor terms, (iv) zero-range isospin-breaking terms, (v) finite-range higher-order regularized terms, (vi) finite-range separable terms, (vii) zero-range two-body pairing terms, (viii) multi-quasiparticle blocking, (ix) Pfaffian overlaps, (x) particle-number and parity symmetry restoration, (xi) axialization, (xii) Wigner functions, (xiii) choice of the harmonic-oscillator basis, (xiv) fixed Omega partitions, (xv) consistency formula between energy and fields, and we corrected several errors of the previous versions., Comment: 52 LaTeX pages, revised version
- Published
- 2021
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47. Role of topology in determining the precision of a finite thermometer
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Luca Razzoli, Matteo G. A. Paris, Paolo Bordone, and Alessandro Candeloro
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Physics ,Quantum Physics ,TEMPERATURE-FLUCTUATIONS ,ALGEBRAIC CONNECTIVITY ,QUANTUM THERMODYNAMICS ,GROUND-STATE ,LIMITS ,finite thermometer ,FOS: Physical sciences ,Topology (electrical circuits) ,Graph theory ,Quantum walks, Fisher Information, finite thermometer ,Topology ,Heat capacity ,symbols.namesake ,Position (vector) ,Thermometer ,symbols ,Fisher Information ,Quantum walk ,Fisher information ,Quantum Physics (quant-ph) ,Energy (signal processing) ,Quantum walks - Abstract
Temperature fluctuations of a finite system follows the Landau bound $\delta T^2 = T^2/C(T)$ where $C(T)$ is the heat capacity of the system. In turn, the same bound sets a limit to the precision of temperature estimation when the system itself is used as a thermometer. In this paper, we employ graph theory and the concept of Fisher information to assess the role of topology on the thermometric performance of a given system. We find that low connectivity is a resource to build precise thermometers working at low temperatures, whereas highly connected systems are suitable for higher temperatures. Upon modelling the thermometer as a set of vertices for the quantum walk of an excitation, we compare the precision achievable by position measurement to the optimal one, which itself corresponds to energy measurement., Comment: 16 pages, 8 figures, accepted version
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- 2021
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48. Filopodia rotate and coil by actively generating twist in their actin shaft
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Natascha Leijnse, Szabolcs Semsey, Poul Martin Bendix, Amin Doostmohammadi, Jesper Nylandsted, Younes Farhangi Barooji, Lena Wullkopf, Mohammad Reza Arastoo, Lene B. Oddershede, Bram M.P. Verhagen, Stine Lauritzen Sønder, and Janine T. Erler
- Subjects
DYNAMICS ,Cell type ,animal structures ,MIGRATION ,Traction (engineering) ,General Physics and Astronomy ,FOS: Physical sciences ,CYTOSKELETON ,macromolecular substances ,Condensed Matter - Soft Condensed Matter ,ADHESION ,MAINTAINS ,Myosins ,Filamentous actin ,General Biochemistry, Genetics and Molecular Biology ,Motion ,Myosin ,Physics - Biological Physics ,Pseudopodia ,Twist ,Actin ,Physics ,Multidisciplinary ,INVADOPODIA ,Dynamics (mechanics) ,RETRACTION ,General Chemistry ,Actins ,Actin Cytoskeleton ,Biological Physics (physics.bio-ph) ,GROUND-STATE ,Biophysics ,Soft Condensed Matter (cond-mat.soft) ,EMBRYONIC STEM-CELLS ,FASCIN ,Filopodia - Abstract
Filopodia are actin-rich structures, present on the surface of practically every known eukaryotic cell. These structures play a pivotal role in specific cell-cell and cell-matrix interactions by allowing cells to explore their environment, generate mechanical forces, perform chemical signaling, or convey signals via intercellular tunneling nano-bridges. The dynamics of filopodia appear quite complex as they exhibit a rich behavior of buckling, pulling, length and shape changes. Here, we find that filopodia additionally explore their 3D extracellular space by combining growth and shrinking with axial twisting and buckling of their actin rich core. Importantly, we show the rotational dynamics of the filamentous actin inside filopodia for a range of highly distinct and cognate cell types spanning from earliest development to highly differentiated tissue cells. Non-equilibrium physical modeling of actin and myosin confirm that twist, and hence rotation, is an emergent phenomenon of active filaments confined in a narrow channel which points to a generic mechanism present in all cells. Our measurements confirm that filopodia exert traction forces and form helical buckles in a range of different cell types that can be ascribed to accumulation of sufficient twist. These results lead us to conclude that activity induced twisting of the actin shaft is a general mechanism underlying fundamental functions of filopodia.
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- 2020
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49. Unified weak/strong coupling framework for nuclear matter and neutron stars
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Matti Järvinen, Niko Jokela, Jere Remes, Govert Nijs, Helsinki Institute of Physics, and Department of Physics
- Subjects
High Energy Physics - Theory ,Equation of state ,Nuclear Theory ,FOS: Physical sciences ,MASS ,114 Physical sciences ,01 natural sciences ,Deconfinement ,Nuclear Theory (nucl-th) ,Nuclear physics ,High Energy Physics - Phenomenology (hep-ph) ,0103 physical sciences ,010306 general physics ,Nuclear Experiment ,High Energy Astrophysical Phenomena (astro-ph.HE) ,Physics ,RADIUS ,010308 nuclear & particles physics ,Gravitational wave ,EQUATION-OF-STATE ,Nuclear matter ,QCD ,MODEL ,Neutron star ,Strange matter ,Stars ,High Energy Physics - Phenomenology ,High Energy Physics - Theory (hep-th) ,GROUND-STATE ,DENSITY ,YANG-MILLS ,Nucleon ,Astrophysics - High Energy Astrophysical Phenomena - Abstract
Ab initio methods using weakly interacting nucleons give a good description of condensed nuclear matter up to densities comparable to the nuclear saturation density. At higher densities palpable strong interactions between overlapping nucleons become important; we propose that the interactions will continuously switch over to follow a holographic model in this region. In order to implement this, we construct hybrid equations of state (EoSs) where various models are used for low density nuclear matter, and the holographic V-QCD model is used for non-perturbative high density nuclear matter as well as for quark matter. We carefully examine all existing constraints from astrophysics of compact stars and discuss their implications for the hybrid EoSs. Thanks to the stiffness of the V-QCD EoS for nuclear matter, we obtain a large family of viable hybrid EoSs passing the constraints. We find that quark matter cores in neutron stars are unstable due to the strongly first order deconfinement transition, and predict bounds on the tidal deformability as well as on the radius of neutron stars. By relying on universal relations, we also constrain characteristic peak frequencies of gravitational waves produced in neutron star mergers., 40 pages, 19 figures; v2: analysis of I-Love-Q relations added
- Published
- 2020
50. A first-principles reassessment of the Fe-N phase diagram in the low-nitrogen limit
- Author
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Sam De Waele, Elke Leunis, Stefaan Cottenier, Lode Duprez, and Kurt Lejaeghere
- Subjects
IRON NITRIDE ,Technology and Engineering ,Materials science ,GENERALIZED-GRADIENT-APPROXIMATION ,Thermodynamics ,Precipitation ,Density-functional theory ,02 engineering and technology ,DIFFRACTION ,010402 general chemistry ,Nitride materials ,Magnetization ,CLUSTER VARIATION METHOD ,01 natural sciences ,Heat capacity ,Thermodynamic properties ,EXCHANGE INTERACTIONS ,MAGNETIC-PROPERTIES ,ELASTIC-CONSTANTS ,Ferrite (iron) ,Metastability ,Materials Chemistry ,Solvus ,TEMPERATURE ,Phase diagram ,TOTAL-ENERGY CALCULATIONS ,Mechanical Engineering ,Metals and Alloys ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Chemistry ,Physics and Astronomy ,Mechanics of Materials ,GROUND-STATE ,Curie temperature ,0210 nano-technology ,Nitriding ,Solid solution - Abstract
Nitriding of steels has been widely used for almost a century. However, insight in two important precipitating phases for low concentration through-thickness nitriding is still lacking, hindering further development of the process. Due to their metastable nature, manufacturing large homogeneous samples of Fe4N and Fe16N2 is very challenging. Consequently, measuring thermodynamic properties, such as heat capacity and free energy, has proven difficult at best. In this work, we have calculated those thermodynamic properties using density-functional theory (DFT) for Fe4N, Fe16N2 and ferrite with nitrogen in solid solution. This information is a prerequisite to improve the accuracy of larger-scale modeling approaches of iron nitrides. We used the free energies to construct the temperature/concentration phase diagram for low nitrogen concentrations from 0 K to 865 K . Both the range of metastability for Fe16N2 and the nitrogen solvus confirm the experimental data. On the other hand, it was concluded that the experimental Curie temperature for Fe16N2 is severely underestimated because of the thermodynamic instability above 400 K .
- Published
- 2019
- Full Text
- View/download PDF
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