61,051 results on '"Gilbert, P."'
Search Results
2. Game Engines for Immersive Visualization: Using Unreal Engine Beyond Entertainment
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Krüger, Marcel, Gilbert, David, Kuhlen, Torsten Wolfgang, and Gerrits, Tim
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Computer Science - Human-Computer Interaction ,Computer Science - Graphics - Abstract
One core aspect of immersive visualization labs is to develop and provide powerful tools and applications that allow for efficient analysis and exploration of scientific data. As the requirements for such applications are often diverse and complex, the same applies to the development process. This has led to a myriad of different tools, frameworks, and approaches that grew and developed over time. The steady advance of commercial off-the-shelf game engines such as Unreal Engine has made them a valuable option for development in immersive visualization labs. In this work, we share our experience of migrating to Unreal Engine as a primary developing environment for immersive visualization applications. We share our considerations on requirements, present use cases developed in our lab to communicate advantages and challenges experienced, discuss implications on our research and development environments, and aim to provide guidance for others within our community facing similar challenges., Comment: 11 + 3 pages, 9 figures, 1 table, published in Presence: Virtual and Augmented Reality
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- 2024
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3. Attosecond Coherent Electron Motion in a Photoionized Aromatic Molecule
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Driver, Taran, Guo, Zhaoheng, Isele, Erik, Grell, Gilbert, Ruberti, Marco, ONeal, Jordan T., Alexander, Oliver, Beauvarlet, Sandra, Cesar, David, Duris, Joseph, Garratt, Douglas, Larsen, Kirk A., Li, Siqi, Kolorenč, Přemysl, McCracken, Gregory A., Tuthill, Daniel, Wang, Zifan, Berrah, Nora, Bostedt, Christoph, Borne, Kurtis, Cheng, Xinxin, DiMauro, Louis F., Doumy, Gilles, Franz, Paris L., Kamalov, Andrei, Li, Xiang, Lin, Ming-Fu, Obaid, Razib, Picón, Antonio, Robles, River R., Rolles, Daniel, Rudenko, Artem, Shaikh, Moniruzzaman, Slaughter, Daniel S., Sudar, Nicholas S., Thierstein, Emily, Ueda, Kiyoshi, Wang, Enliang, Wang, Anna L., Weber, Thorsten, Wolf, Thomas J. A., Young, Linda, Zhang, Zhen, Averbukh, Vitali, Gessner, Oliver, Bucksbaum, Philip H., Kling, Matthias F., Palacios, Alicia, Martín, Fernando, Marangos, Jon P., Walter, Peter, Marinelli, Agostino, and Cryan, James P.
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Physics - Chemical Physics - Abstract
In molecular systems, the ultrafast motion of electrons initiates the process of chemical change. Tracking this electronic motion across molecules requires coupling attosecond time resolution to atomic-scale spatial sensitivity. In this work, we employ a pair of attosecond x-ray pulses from an x-ray free-electron laser to follow electron motion resulting from the sudden removal of an electron from a prototypical aromatic system, para-aminophenol. X-ray absorption enables tracking this motion with atomic-site specificity. Our measurements are compared with state-of-the-art computational modeling, reproducing the observed response across multiple timescales. Sub-femtosecond dynamics are assigned to states undergoing non-radiative decay, while few-femtosecond oscillatory motion is associated with electronic wavepacket motion in stable cation states, that will eventually couple to nuclear motion. Our work provides insight on the ultrafast charge motion preceding and initiating chemical transformations in moderately complex systems, and provides a powerful benchmark for computational models of ultrafast charge motion in matter.
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- 2024
4. AAD-LLM: Adaptive Anomaly Detection Using Large Language Models
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Russell-Gilbert, Alicia, Sommers, Alexander, Thompson, Andrew, Cummins, Logan, Mittal, Sudip, Rahimi, Shahram, Seale, Maria, Jaboure, Joseph, Arnold, Thomas, and Church, Joshua
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Computer Science - Computational Engineering, Finance, and Science - Abstract
For data-constrained, complex and dynamic industrial environments, there is a critical need for transferable and multimodal methodologies to enhance anomaly detection and therefore, prevent costs associated with system failures. Typically, traditional PdM approaches are not transferable or multimodal. This work examines the use of Large Language Models (LLMs) for anomaly detection in complex and dynamic manufacturing systems. The research aims to improve the transferability of anomaly detection models by leveraging Large Language Models (LLMs) and seeks to validate the enhanced effectiveness of the proposed approach in data-sparse industrial applications. The research also seeks to enable more collaborative decision-making between the model and plant operators by allowing for the enriching of input series data with semantics. Additionally, the research aims to address the issue of concept drift in dynamic industrial settings by integrating an adaptability mechanism. The literature review examines the latest developments in LLM time series tasks alongside associated adaptive anomaly detection methods to establish a robust theoretical framework for the proposed architecture. This paper presents a novel model framework (AAD-LLM) that doesn't require any training or finetuning on the dataset it is applied to and is multimodal. Results suggest that anomaly detection can be converted into a "language" task to deliver effective, context-aware detection in data-constrained industrial applications. This work, therefore, contributes significantly to advancements in anomaly detection methodologies.
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- 2024
5. Thank You, Stingray: Multilingual Large Language Models Can Not (Yet) Disambiguate Cross-Lingual Word Sense
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Cahyawijaya, Samuel, Zhang, Ruochen, Lovenia, Holy, Cruz, Jan Christian Blaise, Gilbert, Elisa, Nomoto, Hiroki, and Aji, Alham Fikri
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Computer Science - Computation and Language ,Computer Science - Artificial Intelligence - Abstract
Multilingual large language models (LLMs) have gained prominence, but concerns arise regarding their reliability beyond English. This study addresses the gap in cross-lingual semantic evaluation by introducing a novel benchmark for cross-lingual sense disambiguation, StingrayBench. In this paper, we demonstrate using false friends -- words that are orthographically similar but have completely different meanings in two languages -- as a possible approach to pinpoint the limitation of cross-lingual sense disambiguation in LLMs. We collect false friends in four language pairs, namely Indonesian-Malay, Indonesian-Tagalog, Chinese-Japanese, and English-German; and challenge LLMs to distinguish the use of them in context. In our analysis of various models, we observe they tend to be biased toward higher-resource languages. We also propose new metrics for quantifying the cross-lingual sense bias and comprehension based on our benchmark. Our work contributes to developing more diverse and inclusive language modeling, promoting fairer access for the wider multilingual community.
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- 2024
6. The Local Ultraviolet to Infrared Treasury I. Survey Overview of the Broadband Imaging
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Gilbert, Karoline M., Choi, Yumi, Boyer, Martha L., Williams, Benjamin F., Weisz, Daniel R., Bell, Eric F., Dalcanton, Julianne J., McQuinn, Kristen B. W., Skillman, Evan D., Costa, Guglielmo, Fouesneau, Morgan, Girardi, Léo, Goldman, Steven R., Gordon, Karl D., Guhathakurta, Puragra, Gull, Maude, Hagen, Lea, Huynh, Ky, Lindberg, Christina W., Marigo, Paola, Murray, Claire E., Pastorelli, Giada, and Merica-Jones, Petia Yanchulova
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Astrophysics - Astrophysics of Galaxies - Abstract
The Local Ultraviolet to Infrared Treasury (LUVIT) is a Hubble Space Telescope program that combines newly acquired data in the near ultraviolet (NUV), optical, and near infrared (NIR) with archival optical and NIR imaging to produce multiband panchromatic resolved stellar catalogs for 23 pointings in 22 low-mass, star-forming galaxies ranging in distance from the outskirts of the Local Group to ~3.8 Mpc. We describe the survey design, detail the LUVIT broadband filter observations and the archival datasets included in the LUVIT reductions, and summarize the simultaneous multiband data reduction steps. The spatial distributions and color-magnitude diagrams (CMDs) from the resulting stellar catalogs are presented for each target, from the NUV to the NIR. We demonstrate in which regions of the CMDs stars with NUV and optical, optical and NIR, and NUV through NIR detections reside. For each target, we use the results from artificial star tests to measure representative completeness, bias, and total photometric uncertainty as a function of magnitude in each broadband filter. We also assess which LUVIT targets have significant spatial variation in the fraction of stars recovered at a given magnitude. The panchromatic LUVIT stellar catalogs will provide a rich legacy dataset for a host of resolved stellar population studies., Comment: 48 pages, 14 figures, 8 tables, accepted for publication in ApJS
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- 2024
7. Scylla IV: Intrinsic Stellar Properties and Line-of-Sight Dust Extinction Measurements Towards 1.5 Million Stars in the SMC and LMC
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Lindberg, Christina W., Murray, Claire E., Merica-Jones, Petia Yanchulova, Bot, Caroline, Burhenne, Clare, Choi, Yumi, Clark, Christopher J. R., Cohen, Roger E., Gilbert, Karoline M., Goldman, Steven R., Gordon, Karl D., Hirschauer, Alec S., McQuinn, Kristen B. W., Roman-Duval, Julia C., Sandstrom, Karin M., Tarantino, Elizabeth, and Williams, Benjamin F.
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Astrophysics - Astrophysics of Galaxies - Abstract
By analyzing the spectral energy distributions (SEDs) of resolved stars in nearby galaxies, we can constrain their stellar properties and line-of-sight dust extinction. From the Scylla survey, we obtain ultraviolet to near-infrared photometry from Wide Field Camera 3 onboard the {\it Hubble Space Telescope} for more than 1.5 million stars in the SMC and LMC. We use the Bayesian Extinction and Stellar Tool (BEAST) to analyze the multi-band SEDs of these sources and characterize their initial masses, ages, metallicities, distances, and line-of-sight extinction properties (e.g.~$A_V$, $R_V$). We apply quality cuts and perform validation simulations to construct a catalog of over 550,000 stars with high-reliability SED fits, which we use to analyze the stellar content and extinction properties of the SMC and LMC. We detect stars with masses as low as 0.6 $M_{\odot}$. Observed stellar age distributions show a jump in stars around 6 Gyrs ago, which is in agreement with other star-formation histories. Extinctions ($A_V$) in both galaxies follow a log-normal distribution. We compare $A_V$ with ancillary gas and dust tracers like $HI$, $H_\alpha$, and far infrared (FIR) dust emission and find positive correlations on a field-by-field basis. We convert observed $A_V$ to predicted dust surface densities using the Draine et. al. (2014) model and find $A_V$-based dust surface densities are a factor of $\sim$2.5 lower than observed FIR-based dust surface densities, a correction factor similar to other studies., Comment: Submitted to ApJ, 31 pages
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- 2024
8. A Flow-based Truncated Denoising Diffusion Model for Super-resolution Magnetic Resonance Spectroscopic Imaging
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Dong, Siyuan, Cai, Zhuotong, Hangel, Gilbert, Bogner, Wolfgang, Widhalm, Georg, Huang, Yaqing, Liang, Qinghao, You, Chenyu, Kumaragamage, Chathura, Fulbright, Robert K., Mahajan, Amit, Karbasi, Amin, Onofrey, John A., de Graaf, Robin A., and Duncan, James S.
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Electrical Engineering and Systems Science - Image and Video Processing ,Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Machine Learning - Abstract
Magnetic Resonance Spectroscopic Imaging (MRSI) is a non-invasive imaging technique for studying metabolism and has become a crucial tool for understanding neurological diseases, cancers and diabetes. High spatial resolution MRSI is needed to characterize lesions, but in practice MRSI is acquired at low resolution due to time and sensitivity restrictions caused by the low metabolite concentrations. Therefore, there is an imperative need for a post-processing approach to generate high-resolution MRSI from low-resolution data that can be acquired fast and with high sensitivity. Deep learning-based super-resolution methods provided promising results for improving the spatial resolution of MRSI, but they still have limited capability to generate accurate and high-quality images. Recently, diffusion models have demonstrated superior learning capability than other generative models in various tasks, but sampling from diffusion models requires iterating through a large number of diffusion steps, which is time-consuming. This work introduces a Flow-based Truncated Denoising Diffusion Model (FTDDM) for super-resolution MRSI, which shortens the diffusion process by truncating the diffusion chain, and the truncated steps are estimated using a normalizing flow-based network. The network is conditioned on upscaling factors to enable multi-scale super-resolution. To train and evaluate the deep learning models, we developed a 1H-MRSI dataset acquired from 25 high-grade glioma patients. We demonstrate that FTDDM outperforms existing generative models while speeding up the sampling process by over 9-fold compared to the baseline diffusion model. Neuroradiologists' evaluations confirmed the clinical advantages of our method, which also supports uncertainty estimation and sharpness adjustment, extending its potential clinical applications., Comment: Accepted by Medical Image Analysis (MedIA)
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- 2024
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9. Piezoelectrically actuated high-speed spatial light modulator for visible to near-infrared wavelengths
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Vanackere, Tom, Hermans, Artur, Christen, Ian, Panuski, Christopher, Dong, Mark, Zimmermann, Matthew, Raniwala, Hamza, Leenheer, Andrew J., Eichenfield, Matt, Gilbert, Gerald, and Englund, Dirk
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Physics - Optics ,Physics - Applied Physics - Abstract
Advancements in light modulator technology have been driving discoveries and progress across various fields. The problem of large-scale coherent optical control of atomic quantum systems-including cold atoms, ions, and solid-state color centers-presents among the most stringent requirements. This motivates a new generation of high-speed large-scale modulator technology with the following requirements: (R1) operation at a design wavelength of choice in the visible (VIS) to near-infrared (NIR) spectrum, (R2) a scalable technology with a high channel density (> 100mm-2 ), (R3) a high modulation speed (> 100MHz), and (R4) a high extinction ratio (> 20 dB). To fulfill these requirements, we introduce a modulator technology based on piezoelectrically actuated silicon nitride resonant waveguide gratings fabricated on 200mm diameter silicon wafers with CMOS compatible processes. We present a proof-of-concept device with 4 x 4 individually addressable 50 {mu}m x 50 {mu}m pixels or channels, each containing a resonant waveguide grating with a ~ 780 nm design wavelength, supporting > 100MHz modulation speeds, and a spectral response with > 20 dB extinction., Comment: 9 pages + 2 pages supplementary
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- 2024
10. A Low Metallicity Massive Contact Binary Star System Candidate in WLM identified by Hubble and James Webb Space Telescope imaging
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Gull, Maude, Weisz, Daniel R., El-Badry, Kareem, Henneco, Jan, Savino, Alessandro, Durbin, Meredith, Choi, Yumi, Cohen, Roger E., Cole, Andrew A., Correnti, Matteo, Dalcanton, Julianne J., Gilbert, Karoline M., Goldman, Steven R., Guhathakurta, Puragra, McQuinn, Kristen B. W., Newman, Max J. B., Skillman, Evan D., and Williams, Benjamin F.
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Astrophysics - Solar and Stellar Astrophysics ,Astrophysics - Astrophysics of Galaxies - Abstract
We present archival HST and JWST ultraviolet through near infrared time series photometric observations of a massive minimal-contact binary candidate in the metal-poor galaxy WLM ($Z = 0.14 Z_{\odot}$). This discovery marks the lowest metallicity contact binary candidate observed to date. We determine the nature of the two stars in the binary by using the eclipsing binary modeling software (PHysics Of Eclipsing BinariEs; PHOEBE) to train a neural network to fit our observed panchromatic multi-epoch photometry. The best fit model consists of two hot MS stars ($T_1=29800^{+2300}_{-1700}$ K, $M_1=16^{+2}_{-3}~M_{\odot}$, and $T_2=18000^{+5000}_{-5000}$ K, $M_2=7^{+5}_{-3}~M_{\odot}$). We discuss plausible evolutionary paths for the system, and suggest the system is likely to be currently in a contact phase before ultimately ending in a merger. Future spectroscopy will help to further narrow down evolutionary pathways. This work showcases a novel use of data of JWST and HST imaging originally taken to characterize RR Lyrae. We expect time series imaging from LSST, BlackGEM, etc. to uncover similar types of objects in nearby galaxies., Comment: comments welcome
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- 2024
11. Pathologist-like explainable AI for interpretable Gleason grading in prostate cancer
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Mittmann, Gesa, Laiouar-Pedari, Sara, Mehrtens, Hendrik A., Haggenmüller, Sarah, Bucher, Tabea-Clara, Chanda, Tirtha, Gaisa, Nadine T., Wagner, Mathias, Klamminger, Gilbert Georg, Rau, Tilman T., Neppl, Christina, Compérat, Eva Maria, Gocht, Andreas, Hämmerle, Monika, Rupp, Niels J., Westhoff, Jula, Krücken, Irene, Seidl, Maximillian, Schürch, Christian M., Bauer, Marcus, Solass, Wiebke, Tam, Yu Chun, Weber, Florian, Grobholz, Rainer, Augustyniak, Jaroslaw, Kalinski, Thomas, Hörner, Christian, Mertz, Kirsten D., Döring, Constanze, Erbersdobler, Andreas, Deubler, Gabriele, Bremmer, Felix, Sommer, Ulrich, Brodhun, Michael, Griffin, Jon, Lenon, Maria Sarah L., Trpkov, Kiril, Cheng, Liang, Chen, Fei, Levi, Angelique, Cai, Guoping, Nguyen, Tri Q., Amin, Ali, Cimadamore, Alessia, Shabaik, Ahmed, Manucha, Varsha, Ahmad, Nazeel, Messias, Nidia, Sanguedolce, Francesca, Taheri, Diana, Baraban, Ezra, Jia, Liwei, Shah, Rajal B., Siadat, Farshid, Swarbrick, Nicole, Park, Kyung, Hassan, Oudai, Sakhaie, Siamak, Downes, Michelle R., Miyamoto, Hiroshi, Williamson, Sean R., Holland-Letz, Tim, Schneider, Carolin V., Kather, Jakob Nikolas, Tolkach, Yuri, and Brinker, Titus J.
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Electrical Engineering and Systems Science - Image and Video Processing ,Computer Science - Artificial Intelligence ,Computer Science - Computer Vision and Pattern Recognition - Abstract
The aggressiveness of prostate cancer, the most common cancer in men worldwide, is primarily assessed based on histopathological data using the Gleason scoring system. While artificial intelligence (AI) has shown promise in accurately predicting Gleason scores, these predictions often lack inherent explainability, potentially leading to distrust in human-machine interactions. To address this issue, we introduce a novel dataset of 1,015 tissue microarray core images, annotated by an international group of 54 pathologists. The annotations provide detailed localized pattern descriptions for Gleason grading in line with international guidelines. Utilizing this dataset, we develop an inherently explainable AI system based on a U-Net architecture that provides predictions leveraging pathologists' terminology. This approach circumvents post-hoc explainability methods while maintaining or exceeding the performance of methods trained directly for Gleason pattern segmentation (Dice score: 0.713 $\pm$ 0.003 trained on explanations vs. 0.691 $\pm$ 0.010 trained on Gleason patterns). By employing soft labels during training, we capture the intrinsic uncertainty in the data, yielding strong results in Gleason pattern segmentation even in the context of high interobserver variability. With the release of this dataset, we aim to encourage further research into segmentation in medical tasks with high levels of subjectivity and to advance the understanding of pathologists' reasoning processes., Comment: 58 pages, 15 figures (incl. supplementary)
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- 2024
12. Type-II Seesaw Higgs triplet productions and decays at the LHC
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Ducu, Otilia A., Dumitriu, Ana E., Jinaru, Adam, Kukla, Romain, Monnier, Emmanuel, Moultaka, Gilbert, Tudorache, Alexandra, and Xu, Hanlin
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High Energy Physics - Phenomenology - Abstract
The Type-II Seesaw Model provides an attractive scenario to account for Majorana-neutrino masses. Its extended Higgs sector, if sufficiently light, can have a rich and distinctive phenomenology at the LHC while yielding automatically an essentially Standard-Model-Higgs-like state. Several phenomenological studies have been devoted to the scalar sector of this model, as well as experimental searches focusing mostly on the (doubly-)charged states. In this paper we present an exhaustive study of the main production and decay channels of all the non-standard scalar states originating from the $SU(2)_L$ doublet and a complex triplet of the model. We stick to scenarios where lepton-number-violating decays are suppressed, for which present experimental limits are still weak, highlighting theoretical parameter sensitivities that were not previously emphasized in the literature and the uncertainties they can induce for the experimental searches at the LHC. A comprehensive classification of the various cascade decays and corresponding Standard Model particle multiplicities is provided. As an illustration, a detailed prospective search study at the LHC with an ATLAS-like detector is carried out on some benchmark points, for charged, doubly-charged, and, for the first time, neutral state productions, Comment: 58 pages, 13 figures
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- 2024
13. Scylla III. The Outside-In Radial Age Gradient in the Small Magellanic Cloud and the Star Formation Histories of the Main Body, Wing and Outer Regions
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Cohen, Roger E., McQuinn, Kristen B. W., Murray, Claire E., Williams, Benjamin F., Choi, Yumi, Lindberg, Christina W., Burhenne, Clare, Gordon, Karl D., Merica-Jones, Petia Yanchulova, Bot, Caroline, Dolphin, Andrew E., Gilbert, Karoline M., Goldman, Steven, Hirschauer, Alec S., Sandstrom, Karin M., and Telford, O. Grace
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Astrophysics - Astrophysics of Galaxies - Abstract
The proximity of the Large and Small Magellanic Clouds (LMC and SMC) provides the opportunity to study the impact of dwarf-dwarf interactions on their mass assembly with a unique level of detail. To this end, we analyze two-filter broadband imaging of 83 Hubble Space Telescope (HST) pointings covering 0.203 deg$^2$ towards the SMC, extending out to $\sim$3.5 kpc in projection from its optical center. Lifetime star formation histories (SFHs) fit to each pointing independently reveal an outside-in age gradient such that fields in the SMC outskirts are older on average. We measure radial gradients of the lookback time to form 90%, 75% and 50% of the cumulative stellar mass for the first time, finding $\delta$($\tau_{90}$, $\tau_{75}$, $\tau_{50}$)/$\delta$R = (0.61$^{+0.08}_{-0.07}$, 0.65$^{+0.09}_{-0.08}$, 0.82$^{+0.12}_{-0.16}$) Gyr/kpc assuming PARSEC evolutionary models and a commonly used elliptical geometry of the SMC, although our results are robust to these assumptions. The wing of the SMC deviates from this trend, forming 25\% of its cumulative mass over the most recent 3 Gyr due to a best-fit star formation rate that remains approximately constant. Our results are consistent with chemodynamical evidence of a tidally stripped SMC component in the foreground, and imply contributions to the observed SFH from multiple previous LMC-SMC interactions. We also compare our SMC SFH with results from a companion study of the LMC, finding that while the two galaxies present different internal, spatially resolved SFH trends, both the LMC and SMC have similar near-constant lifetime SFHs when viewed globally., Comment: ApJ in press. 40 pages, 18 figures, 5 tables including Appendices
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- 2024
14. Scylla II. The Spatially Resolved Star Formation History of the Large Magellanic Cloud Reveals an Inverted Radial Age Gradient
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Cohen, Roger E., McQuinn, Kristen B. W., Murray, Claire E., Williams, Benjamin F., Choi, Yumi, Lindberg, Christina W., Burhenne, Clare, Gordon, Karl D., Merica-Jones, Petia Yanchulova, Gilbert, Karoline M., Boyer, Martha L., Goldman, Steven, Dolphin, Andrew E., and Telford, O. Grace
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Astrophysics - Astrophysics of Galaxies - Abstract
The proximity of the Magellanic Clouds provides the opportunity to study interacting dwarf galaxies near a massive host, and spatial trends in their stellar population properties in particular, with a unique level of detail. The Scylla pure parallel program has obtained deep (80% complete to >1 mag below the ancient main sequence turnoff), homogeneous two-filter Hubble Space Telescope (HST) imaging sampling the inner star-forming disk of the Large Magellanic Cloud (LMC), the perfect complement to shallower, contiguous ground-based surveys. We harness this imaging together with extant archival data and fit lifetime star formation histories (SFHs) to resolved color-magnitude diagrams (CMDs) of 111 individual fields, using three different stellar evolutionary libraries. We validate per-field recovered distances and extinctions as well as the combined global LMC age-metallicity relation and SFH against independent estimates. We find that the present-day radial age gradient reverses from an inside-out gradient in the inner disk to an outside-in gradient beyond $\sim$2 disk scalelengths, supported by ground-based measurements. The gradients become relatively flatter at earlier lookback times, while the location of the inversion remains constant over an order of magnitude in lookback time, from $\sim$1$-$10 Gyr. This suggests at least one mechanism that predates the recent intense LMC-SMC interaction. We compare observed radial age trends to other late-type galaxies at fixed stellar mass and discuss similarities and differences in the context of potential drivers, implying strong radial migration in the LMC., Comment: ApJ in press. 45 pages, 17 figures, 9 tables including Appendices
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- 2024
15. Scylla I: A pure-parallel, multi-wavelength imaging survey of the ULLYSES fields in the LMC and SMC
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Murray, Claire E., Lindberg, Christina W., Merica-Jones, Petia Yanchulova, Williams, Benjamin F., Cohen, Roger E., Gordon, Karl D., McQuinn, Kristen B. W., Choi, Yumi, Burhenne, Clare, Sandstrom, Karin M., Bot, Caroline, Johnson, L. Clifton, Goldman, Steven R., Clark, Christopher J. R., Roman-Duval, Julia C., Gilbert, Karoline M., Peek, J. E. G., Hirschauer, Alec S., Boyer, Martha L., and Dolphin, Andrew E.
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Astrophysics - Astrophysics of Galaxies - Abstract
Scylla is a deep Hubble Space Telescope survey of the stellar populations, interstellar medium and star formation in the LMC and SMC. As a pure-parallel complement to the Ultraviolet Legacy Library of Young Stars as Essential Standards (ULLYSES) survey, Scylla obtained 342 orbits of ultraviolet (UV) through near-infrared (IR) imaging of the LMC and SMC with Wide Field Camera 3. In this paper, we describe the science objectives, observing strategy, data reduction procedure, and initial results from our photometric analysis of 96 observed fields. Although our observations were constrained by ULYSSES primary exposures, we imaged all fields in at least two filters (F475W and F814W), and 64% of fields in at least three and as many as seven WFC3 filters spanning the UV to IR. Overall, we reach average 50% completeness of $m_{\rm F225W}=26.0$, $m_{\rm F275W}=26.2$, $m_{\rm F336W}=26.9$, $m_{\rm F475W}=27.8$, $m_{\rm F814W}=25.5$, $m_{\rm F110W}=24.7$, and $m_{\rm F160W}=24.0$ Vega magnitudes in our photometric catalogs, which is faintward of the ancient main sequence turnoff in all filters. The primary science goals of Scylla include characterizing the structure and properties of dust in the MCs, as well as their spatially-resolved star formation and chemical enrichment histories. Our images and photometric catalogs, which represent the widest-area coverage of MCs with HST photometry to date, are available as a high-level science product at the Barbara A. Mikulski Archive for Space Telescopes., Comment: 25 pages, 16 figures, 8 tables. Accepted for publication in ApJS
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- 2024
16. Rician Denoising Diffusion Probabilistic Models For Sodium Breast MRI Enhancement
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Yuan, Shuaiyu, Whitmarsh, Tristan, Kessler, Dimitri A, Arponen, Otso, McLean, Mary A, Baxter, Gabrielle, Riemer, Frank, Kennerley, Aneurin J, Brackenbury, William J, Gilbert, Fiona J, and Kaggie, Joshua D
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Electrical Engineering and Systems Science - Image and Video Processing ,Computer Science - Computer Vision and Pattern Recognition ,I.4.3 - Abstract
Sodium MRI is an imaging technique used to visualize and quantify sodium concentrations in vivo, playing a role in many biological processes and potentially aiding in breast cancer characterization. Sodium MRI, however, suffers from inherently low signal-to-noise ratios (SNR) and spatial resolution, compared with conventional proton MRI. A deep-learning method, the Denoising Diffusion Probabilistic Models (DDPM), has demonstrated success across a wide range of denoising tasks, yet struggles with sodium MRI's unique noise profile, as DDPM primarily targets Gaussian noise. DDPM can distort features when applied to sodium MRI. This paper advances the DDPM by introducing the Rician Denoising Diffusion Probabilistic Models (RDDPM) for sodium MRI denoising. RDDPM converts Rician noise to Gaussian noise at each timestep during the denoising process. The model's performance is evaluated using three non-reference image quality assessment metrics, where RDDPM consistently outperforms DDPM and other CNN-based denoising methods., Comment: 3 figures
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- 2024
17. Boosting Camera Motion Control for Video Diffusion Transformers
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Cheong, Soon Yau, Ceylan, Duygu, Mustafa, Armin, Gilbert, Andrew, and Huang, Chun-Hao Paul
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Artificial Intelligence - Abstract
Recent advancements in diffusion models have significantly enhanced the quality of video generation. However, fine-grained control over camera pose remains a challenge. While U-Net-based models have shown promising results for camera control, transformer-based diffusion models (DiT)-the preferred architecture for large-scale video generation - suffer from severe degradation in camera motion accuracy. In this paper, we investigate the underlying causes of this issue and propose solutions tailored to DiT architectures. Our study reveals that camera control performance depends heavily on the choice of conditioning methods rather than camera pose representations that is commonly believed. To address the persistent motion degradation in DiT, we introduce Camera Motion Guidance (CMG), based on classifier-free guidance, which boosts camera control by over 400%. Additionally, we present a sparse camera control pipeline, significantly simplifying the process of specifying camera poses for long videos. Our method universally applies to both U-Net and DiT models, offering improved camera control for video generation tasks.
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- 2024
18. Universality Class Transition Across the Helimagnetic Ordering in Te-doped Cu$_2$OSeO$_3$
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Ferguson, A. J., Vás, M., Vella, E. J., Pervez, Md. F., Gilbert, E. P., Ulrich, C., Yick, S., and Söhnel, T.
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Condensed Matter - Strongly Correlated Electrons ,Condensed Matter - Materials Science - Abstract
Cu$_2$OSeO$_3$ is a multiferroic insulating chiral magnet which exhibits various magnetic orderings at different conditions. The positions of these magnetic phase transitions are known to be sensitive to chemical substitution. Here, we present a universality class analysis of the Cu$_2$OSe$_{1-x}$Te$_x$O$_3$ with $(0\leq x \leq 0.1)$. Tellurium is a non-magnetic ion which, upon substitution into the selenium positions of the structure, applies a positive chemical pressure and expands the crystal lattice. Our SANS and magnetometry data indicate that Te inclusion lowers the paramagnetic to helical ordering temperature and the critical field required for the conical to field polarised phase transition. By using the Heat-map Modified Iteration Method that evaluates critical behaviour on both sides of the transition, we show that the Heisenberg to Ising universality class transition of the initial ordering is robust to internal chemical pressure. Additionally, we attribute the decreases with doping in both critical temperature and critical field to be due to decreases in the strength of the Dzyaloshinskii-Moriya and Symmetric Exchange Interactions., Comment: 21 pages and 9 figures (Manuscript)
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- 2024
19. NeRF-Accelerated Ecological Monitoring in Mixed-Evergreen Redwood Forest
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Korycki, Adam, Yeaton, Cory, Gilbert, Gregory S., Josephson, Colleen, and McGuire, Steve
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Robotics - Abstract
Forest mapping provides critical observational data needed to understand the dynamics of forest environments. Notably, tree diameter at breast height (DBH) is a metric used to estimate forest biomass and carbon dioxide sequestration. Manual methods of forest mapping are labor intensive and time consuming, a bottleneck for large-scale mapping efforts. Automated mapping relies on acquiring dense forest reconstructions, typically in the form of point clouds. Terrestrial laser scanning (TLS) and mobile laser scanning (MLS) generate point clouds using expensive LiDAR sensing, and have been used successfully to estimate tree diameter. Neural radiance fields (NeRFs) are an emergent technology enabling photorealistic, vision-based reconstruction by training a neural network on a sparse set of input views. In this paper, we present a comparison of MLS and NeRF forest reconstructions for the purpose of trunk diameter estimation in a mixed-evergreen Redwood forest. In addition, we propose an improved DBH-estimation method using convex-hull modeling. Using this approach, we achieved 1.68 cm RMSE, which consistently outperformed standard cylinder modeling approaches. Our code contributions and forest datasets are freely available at https://github.com/harelab-ucsc/RedwoodNeRF.
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- 2024
20. DiffSpec: Differential Testing with LLMs using Natural Language Specifications and Code Artifacts
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Rao, Nikitha, Gilbert, Elizabeth, Ramananandro, Tahina, Swamy, Nikhil, Goues, Claire Le, and Fakhoury, Sarah
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Computer Science - Software Engineering - Abstract
Differential testing can be an effective way to find bugs in software systems with multiple implementations that conform to the same specification, like compilers, network protocol parsers, and language runtimes. Specifications for such systems are often standardized in natural language documents, like Instruction Set Architecture (ISA) specifications, Wasm specifications or IETF RFC's. Large Language Models (LLMs) have demonstrated potential in both generating tests and handling large volumes of natural language text, making them well-suited for utilizing artifacts like specification documents, bug reports, and code implementations. In this work, we leverage natural language and code artifacts to guide LLMs to generate targeted, meaningful tests that highlight meaningful behavioral differences between implementations, including those corresponding to bugs. We introduce DiffSpec, a framework for generating differential tests with LLMs using prompt chaining. We demonstrate the efficacy of DiffSpec on two different systems, namely, eBPF runtimes and Wasm validators. Using DiffSpec, we generated 359 differentiating tests, uncovering at least four distinct and confirmed bugs in eBPF, including a kernel memory leak, inconsistent behavior in jump instructions, and undefined behavior when using the stack pointer. We also found 279 differentiating tests in Wasm validators, that point to at least 2 confirmed and fixed bugs in Wizard Engine.
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- 2024
21. Scalable construction of hybrid quantum photonic cavities
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Greenspon, Andrew S., Dong, Mark, Christen, Ian, Gilbert, Gerald, Eichenfield, Matt, and Englund, Dirk
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Physics - Optics ,Quantum Physics - Abstract
Nanophotonic resonators are central to numerous applications, from efficient spin-photon interfaces to laser oscillators and precision sensing. A leading approach consists of photonic crystal (PhC) cavities, which have been realized in a wide range of dielectric materials. However, translating proof-of-concept devices into a functional system entails a number of additional challenges, inspiring new approaches that combine: resonators with wavelength-scale confinement and high quality factors; scalable integration with integrated circuits and photonic circuits; electrical or mechanical cavity tuning; and, in many cases, a need for heterogeneous integration with functional materials such as III-V semiconductors or diamond color centers for spin-photon interfaces. Here we introduce a concept that generates a finely tunable PhC cavity at a select wavelength between two heterogeneous optical materials whose properties satisfy the above requirements. The cavity is formed by stamping a hard-to-process material with simple waveguide geometries on top of an easy-to-process material consisting of dielectric grating mirrors and active tuning capability. We simulate our concept for the particularly challenging design problem of multiplexed quantum repeaters based on arrays of cavity-coupled diamond color centers, achieving theoretically calculated unloaded quality factors of $10^6$, mode volumes as small as $1.2(\lambda/n_{eff})^3$, and maintaining >60 percent total on-chip collection efficiency of fluorescent photons. We further introduce a method of low-power piezoelectric tuning of these hybrid diamond cavities, simulating optical resonance shifts up to ~760 GHz and color center fluorescence tuning of 5 GHz independent of cavity tuning. These results will motivate integrated photonic cavities toward larger scale systems-compatible designs., Comment: 15 pages, 6 figures, 2 supplementary figures
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- 2024
22. First-principles study of the energetics and the local chemical ordering of tungsten-based alloys
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Qian, Yichen, Gilbert, Mark R., Dezerald, Lucile, Nguyen-Manh, Duc, and Cereceda, David
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Condensed Matter - Materials Science - Abstract
Tungsten (W) is considered a leading candidate for structural and functional materials in future fusion energy devices. The most attractive properties of tungsten for magnetic and inertial fusion energy reactors are its high melting point, high thermal conductivity, low sputtering yield, and low long-term disposal radioactive footprint. However, tungsten also presents a very low fracture toughness, primarily associated with inter-granular failure and bulk plasticity, limiting its applications. In recent years, several families of tungsten-based alloys have been explored to overcome the aforementioned limitations of pure tungsten. These might include tungsten-based high-entropy alloys (W-HEAs) and the so-called tungsten-based "smart alloys". In this work, we present a computational approach that uses first-principles DFT electronic structure calculations to understand the effect of the chemical environment on tungsten-based alloys. In particular, we compared the Special Quasi-random Structure (SQS) and the DFT-coupled Monte Carlo (MC-DFT) methods when investigating the short-range order and elastic properties of two equimolar WCrTaTi and WVTaTi W-HEAs, and two WCrTi and WCrY W-SAs. We found that structures after MC-DFT calculation have lower cohesive energies than SQS structures, with shorter lattice constants, and large elastic properties values. Furthermore, distinct element segregation was studied by calculating the SRO parameter and radius distribution function. The total density of states suggested that the existence of SRO could improve the stability of the structure.
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- 2024
23. High-resolution direct phase control in the spectral domain in ultrashort pulse lasers for pulse-shaping applications
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Buczek, Sean M, Collins, Gilbert W, Arefiev, Alexey, and Manuel, Mario J
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Physics - Optics - Abstract
Ultrafast laser systems, those with a pulse duration on the order of picoseconds or less, have enabled advancements in a wide variety of fields. Of particular interest to this work, these laser systems are the key component to many High Energy Density (HED) physics experiments. Despite this, previous studies on the shape of the laser pulse within the HED community have focused primarily on pulse duration due to the relationship between pulse duration and peak intensity, while leaving the femtosecond scale structure of the pulse shape largely unstudied. To broaden the variety of potential pulses available for study, a method of reliably adjusting the pulse shape at the femtosecond scale using sub-nanometer resolution Direct Phase Control has been developed. This paper examines the capabilities of this new method compared to more commonplace dispersion-based pulse shaping methods. It also will detail the capabilities of the core algorithm driving this technique when used in conjunction with the WIZZLER and DAZZLER instruments that are common in high intensity laser labs. Finally, some discussion is given to possible applications on how the Direct Phase Control pulse shaping technique will be implemented in the future., Comment: 7 pages, 5 figures, 3 of these figures contain subfigures such that 11 image (png) files are used
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- 2024
24. The Compositions of Rocky Planets in Close-in Orbits Tend to be Earth-Like
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Brinkman, Casey L., Weiss, Lauren M., Huber, Daniel, Lee, Rena A., Kolecki, Jared, Tenn, Gwyneth, Zhang, Jingwen, Narayanan, Suchitra, Polanski, Alex S., Dai, Fei, Bean, Jacob L., Beard, Corey, Brady, Madison, Brodheim, Max, Brown, Matt, Deich, William, Edelstein, Jerry, Fulton, Benjamin J., Giacalone, Steven, Gibson, Steven R., Gilbert, Gregory J., Halverson, Samuel, Handley, Luke, Hill, Grant M., Holcomb, Rae, Holden, Bradford, Householder, Aaron, Howard, Andrew W., Isaacson, Howard, Kaye, Stephen, Laher, Russ R., Lanclos, Kyle, Ong, J. M. Joel, Payne, Joel, Petigura, Eric A., Pidhorodetska, Daria, Poppett, Claire, Roy, Arpita, Rubenzahl, Ryan, Saunders, Nicholas, Schwab, Christian, Seifahrt, Andreas, Shaum, Abby P., Sirk, Martin M., Smith, Chris, Smith, Roger, Stefánsson, Guðmundur, Stürmer, Julian, Thorne, Jim, Turtelboom, Emma V., Tyler, Dakotah, Valliant, John, Van Zandt, Judah, Walawender, Josh, Yee, Samuel W., Yeh, Sherry, and Zink, Jon
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Astrophysics - Earth and Planetary Astrophysics ,Astrophysics - Solar and Stellar Astrophysics - Abstract
Hundreds of exoplanets between 1-1.8 times the size of the Earth have been discovered on close in orbits. However, these planets show such a diversity in densities that some appear to be made entirely of iron, while others appear to host gaseous envelopes. To test this diversity in composition, we update the masses of 5 rocky exoplanets (HD 93963 A b, Kepler-10 b, Kepler-100 b, Kepler-407 b, and TOI-1444 b) and present the confirmation of a new planet (TOI-1011) using 187 high precision RVs from Gemini/MAROON-X and Keck/KPF. Our updated planet masses suggest compositions closer to that of the Earth than previous literature values for all planets in our sample. In particular, we report that two previously identified ``super-Mercuries'' (Kepler-100 b and HD 93963 A b) have lower masses that suggest less iron-rich compositions. We then compare the ratio of iron to rock-building species to the abundance ratios of those elements in their host stars. These updated planet compositions do not suggest a steep relationship between planet and host star compositions, contradictory to previous results, and suggest that planets and host stars have similar abundance ratios., Comment: Submitted to AJ 09/30/2024
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- 2024
25. The Future of HCI-Policy Collaboration
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Yang, Qian, Wong, Richmond Y, Jackson, Steven J, Junginger, Sabine, Hagan, Margaret D, Gilbert, Thomas, and Zimmerman, John
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Computer Science - Human-Computer Interaction - Abstract
Policies significantly shape computation's societal impact, a crucial HCI concern. However, challenges persist when HCI professionals attempt to integrate policy into their work or affect policy outcomes. Prior research considered these challenges at the ``border'' of HCI and policy. This paper asks: What if HCI considers policy integral to its intellectual concerns, placing system-people-policy interaction not at the border but nearer the center of HCI research, practice, and education? What if HCI fosters a mosaic of methods and knowledge contributions that blend system, human, and policy expertise in various ways, just like HCI has done with blending system and human expertise? We present this re-imagined HCI-policy relationship as a provocation and highlight its usefulness: It spotlights previously overlooked system-people-policy interaction work in HCI. It unveils new opportunities for HCI's futuring, empirical, and design projects. It allows HCI to coordinate its diverse policy engagements, enhancing its collective impact on policy outcomes., Comment: Proceedings of the 2024 CHI Conference on Human Factors in Computing Systems (CHI '24)
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- 2024
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26. PDFed: Privacy-Preserving and Decentralized Asynchronous Federated Learning for Diffusion Models
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Balan, Kar, Gilbert, Andrew, and Collomosse, John
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Electrical Engineering and Systems Science - Image and Video Processing - Abstract
We present PDFed, a decentralized, aggregator-free, and asynchronous federated learning protocol for training image diffusion models using a public blockchain. In general, diffusion models are prone to memorization of training data, raising privacy and ethical concerns (e.g., regurgitation of private training data in generated images). Federated learning (FL) offers a partial solution via collaborative model training across distributed nodes that safeguard local data privacy. PDFed proposes a novel sample-based score that measures the novelty and quality of generated samples, incorporating these into a blockchain-based federated learning protocol that we show reduces private data memorization in the collaboratively trained model. In addition, PDFed enables asynchronous collaboration among participants with varying hardware capabilities, facilitating broader participation. The protocol records the provenance of AI models, improving transparency and auditability, while also considering automated incentive and reward mechanisms for participants. PDFed aims to empower artists and creators by protecting the privacy of creative works and enabling decentralized, peer-to-peer collaboration. The protocol positively impacts the creative economy by opening up novel revenue streams and fostering innovative ways for artists to benefit from their contributions to the AI space., Comment: Accepted to CM SIGGRAPH European Conference on Visual Media Production 2024
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- 2024
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27. Plurals: A System for Guiding LLMs Via Simulated Social Ensembles
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Ashkinaze, Joshua, Fry, Emily, Edara, Narendra, Gilbert, Eric, and Budak, Ceren
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Computer Science - Computation and Language ,Computer Science - Artificial Intelligence ,Computer Science - Computers and Society ,Computer Science - Human-Computer Interaction ,Computer Science - Multiagent Systems - Abstract
Recent debates raised concerns that language models may favor certain viewpoints. But what if the solution is not to aim for a 'view from nowhere' but rather to leverage different viewpoints? We introduce Plurals, a system and Python library for pluralistic AI deliberation. Plurals consists of Agents (LLMs, optionally with personas) which deliberate within customizable Structures, with Moderators overseeing deliberation. Plurals is a generator of simulated social ensembles. Plurals integrates with government datasets to create nationally representative personas, includes deliberation templates inspired by democratic deliberation theory, and allows users to customize both information-sharing structures and deliberation behavior within Structures. Six case studies demonstrate fidelity to theoretical constructs and efficacy. Three randomized experiments show simulated focus groups produced output resonant with an online sample of the relevant audiences (chosen over zero-shot generation in 75% of trials). Plurals is both a paradigm and a concrete system for pluralistic AI. The Plurals library is available at https://github.com/josh-ashkinaze/plurals and will be continually updated.
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- 2024
28. LoopTree: Exploring the Fused-layer Dataflow Accelerator Design Space
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Gilbert, Michael, Wu, Yannan Nellie, Emer, Joel S., and Sze, Vivienne
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Computer Science - Hardware Architecture - Abstract
Latency and energy consumption are key metrics in the performance of deep neural network (DNN) accelerators. A significant factor contributing to latency and energy is data transfers. One method to reduce transfers or data is reusing data when multiple operations use the same data. Fused-layer accelerators reuse data across operations in different layers by retaining intermediate data in on-chip buffers, which has been shown to reduce energy consumption and latency. Moreover, the intermediate data is often tiled (i.e., broken into chunks) to reduce the on-chip buffer capacity required to reuse the data. Because on-chip buffer capacity is frequently more limited than computation units, fused-layer dataflow accelerators may also recompute certain parts of the intermediate data instead of retaining them in a buffer. Achieving efficient trade-offs between on-chip buffer capacity, off-chip transfers, and recomputation requires systematic exploration of the fused-layer dataflow design space. However, prior work only explored a subset of the design space, and more efficient designs are left unexplored. In this work, we propose (1) a more extensive design space that has more choices in terms of tiling, data retention, recomputation and, importantly, allows us to explore them in combination, (2) a taxonomy to systematically specify designs, and (3) a model, LoopTree, to evaluate the latency, energy consumption, buffer capacity requirements, and off-chip transfers of designs in this design space. We validate our model against a representative set of prior architectures, achieving a worst-case 4% error. Finally, we present case studies that show how exploring this larger space results in more efficient designs (e.g., up to a 10$\times$ buffer capacity reduction to achieve the same off-chip transfers)., Comment: To be published in IEEE Transactions on Circuits and Systems for Artificial Intelligence
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- 2024
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29. A Law of One's Own: The Inefficacy of the DMCA for Non-Consensual Intimate Media
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Qiwei, Li, Zhang, Shihui, Pratt, Samantha Paige, Kasper, Andrew Timothy, Gilbert, Eric, and Schoenebeck, Sarita
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Computer Science - Computers and Society - Abstract
Non-consensual intimate media (NCIM) presents internet-scale harm to individuals who are depicted. One of the most powerful tools for requesting its removal is the Digital Millennium Copyright Act (DMCA). However, the DMCA was designed to protect copyright holders rather than to address the problem of NCIM. Using a dataset of more than 54,000 DMCA reports and over 85 million infringing URLs spanning over a decade, this paper evaluates the efficacy of the DMCA for NCIM takedown. Results show less than 50% of infringing URLs are removed from website hosts in 60 days, and Google Search takes a median of 11.7 days to deindex infringing content. Across web hosts, only 4% of URLs are removed within the first 48 hours. Additionally, the most frequently reported domains for non-commercial NCIM are smaller websites, not large platforms. We stress the need for new laws that ensure a shorter time to takedown that are enforceable across big and small platforms alike., Comment: under review
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- 2024
30. Interpretable Action Recognition on Hard to Classify Actions
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Anichenko, Anastasia, Guerin, Frank, and Gilbert, Andrew
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Artificial Intelligence - Abstract
We investigate a human-like interpretable model of video understanding. Humans recognise complex activities in video by recognising critical spatio-temporal relations among explicitly recognised objects and parts, for example, an object entering the aperture of a container. To mimic this we build on a model which uses positions of objects and hands, and their motions, to recognise the activity taking place. To improve this model we focussed on three of the most confused classes (for this model) and identified that the lack of 3D information was the major problem. To address this we extended our basic model by adding 3D awareness in two ways: (1) A state-of-the-art object detection model was fine-tuned to determine the difference between "Container" and "NotContainer" in order to integrate object shape information into the existing object features. (2) A state-of-the-art depth estimation model was used to extract depth values for individual objects and calculate depth relations to expand the existing relations used our interpretable model. These 3D extensions to our basic model were evaluated on a subset of three superficially similar "Putting" actions from the Something-Something-v2 dataset. The results showed that the container detector did not improve performance, but the addition of depth relations made a significant improvement to performance., Comment: 5 pages, This manuscript has been accepted at the Human-inspired Computer Vision (HCV) ECCV 2024 Workshop. arXiv admin note: text overlap with arXiv:2107.05319
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- 2024
31. Reporting Non-Consensual Intimate Media: An Audit Study of Deepfakes
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Qiwei, Li, Zhang, Shihui, Kasper, Andrew Timothy, Ashkinaze, Joshua, Eaton, Asia A., Schoenebeck, Sarita, and Gilbert, Eric
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Computer Science - Computers and Society - Abstract
Non-consensual intimate media (NCIM) inflicts significant harm. Currently, victim-survivors can use two mechanisms to report NCIM - as a non-consensual nudity violation or as copyright infringement. We conducted an audit study of takedown speed of NCIM reported to X (formerly Twitter) of both mechanisms. We uploaded 50 AI-generated nude images and reported half under X's "non-consensual nudity" reporting mechanism and half under its "copyright infringement" mechanism. The copyright condition resulted in successful image removal within 25 hours for all images (100% removal rate), while non-consensual nudity reports resulted in no image removal for over three weeks (0% removal rate). We stress the need for targeted legislation to regulate NCIM removal online. We also discuss ethical considerations for auditing NCIM on social platforms., Comment: under review
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- 2024
32. A Host Galaxy Morphology Link Between Quasi-Periodic Eruptions and Tidal Disruption Events
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Gilbert, Olivier, Ruan, John J., Eracleous, Michael, Haggard, Daryl, and Runnoe, Jessie C.
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Astrophysics - High Energy Astrophysical Phenomena ,Astrophysics - Astrophysics of Galaxies - Abstract
The physical processes that produce X-ray Quasi-Periodic Eruptions (QPEs) recently discovered from the nuclei of several low-redshift galaxies are mysterious. Several pieces of observational evidence strongly suggest a link between QPEs and Tidal Disruption Events (TDE). Previous studies also reveal that the morphologies of TDE host galaxies are highly concentrated, with high Sersic indicies, bulge-to-total light (B/T) ratios, and stellar surface mass densities relative to the broader galaxy population. We use these distinctive properties to test the link between QPEs and TDEs, by comparing these parameters of QPE host galaxies to TDE host galaxies. We employ archival Legacy Survey images of a sample of 9 QPE host galaxies and a sample of 13 TDE host galaxies, and model their surface brightness profiles. We show that QPE host galaxies have high Sersic indices of ~3, high B/T ratios of ~0.5, and high surface mass densities of ~10^10 Msun kpc^-2. These properties are similar to TDE host galaxies, but are in strong contrast to a mass- and redshift-matched control sample of galaxies. We also find tentative evidence that the central black holes in both QPE and TDE host galaxies are undermassive relative to their stellar mass. The morphological similarities between QPE and TDE host galaxies at the population level add to the mounting evidence of a physical link between these phenomena, and favor QPE models that also invoke TDEs., Comment: 12 pages, 4 figures, submitted to ApJ
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- 2024
33. The Complexity of Two-Team Polymatrix Games with Independent Adversaries
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Hollender, Alexandros, Maystre, Gilbert, and Nagarajan, Sai Ganesh
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Computer Science - Computer Science and Game Theory - Abstract
Adversarial multiplayer games are an important object of study in multiagent learning. In particular, polymatrix zero-sum games are a multiplayer setting where Nash equilibria are known to be efficiently computable. Towards understanding the limits of tractability in polymatrix games, we study the computation of Nash equilibria in such games where each pair of players plays either a zero-sum or a coordination game. We are particularly interested in the setting where players can be grouped into a small number of teams of identical interest. While the three-team version of the problem is known to be PPAD-complete, the complexity for two teams has remained open. Our main contribution is to prove that the two-team version remains hard, namely it is CLS-hard. Furthermore, we show that this lower bound is tight for the setting where one of the teams consists of multiple independent adversaries. On the way to obtaining our main result, we prove hardness of finding any stationary point in the simplest type of non-convex-concave min-max constrained optimization problem, namely for a class of bilinear polynomial objective functions.
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- 2024
34. Thinking Outside the BBox: Unconstrained Generative Object Compositing
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Tarrés, Gemma Canet, Lin, Zhe, Zhang, Zhifei, Zhang, Jianming, Song, Yizhi, Ruta, Dan, Gilbert, Andrew, Collomosse, John, and Kim, Soo Ye
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Artificial Intelligence - Abstract
Compositing an object into an image involves multiple non-trivial sub-tasks such as object placement and scaling, color/lighting harmonization, viewpoint/geometry adjustment, and shadow/reflection generation. Recent generative image compositing methods leverage diffusion models to handle multiple sub-tasks at once. However, existing models face limitations due to their reliance on masking the original object during training, which constrains their generation to the input mask. Furthermore, obtaining an accurate input mask specifying the location and scale of the object in a new image can be highly challenging. To overcome such limitations, we define a novel problem of unconstrained generative object compositing, i.e., the generation is not bounded by the mask, and train a diffusion-based model on a synthesized paired dataset. Our first-of-its-kind model is able to generate object effects such as shadows and reflections that go beyond the mask, enhancing image realism. Additionally, if an empty mask is provided, our model automatically places the object in diverse natural locations and scales, accelerating the compositing workflow. Our model outperforms existing object placement and compositing models in various quality metrics and user studies.
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- 2024
35. CMOS compatibility of semiconductor spin qubits
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Stuyck, Nard Dumoulin, Saraiva, Andre, Gilbert, Will, Pardo, Jesus Cifuentes, Li, Ruoyu, Escott, Christopher C., De Greve, Kristiaan, Voinigescu, Sorin, Reilly, David J., and Dzurak, Andrew S.
- Subjects
Condensed Matter - Mesoscale and Nanoscale Physics ,Quantum Physics - Abstract
Several domains of society will be disrupted once millions of high-quality qubits can be brought together to perform fault-tolerant quantum computing (FTQC). All quantum computing hardware available today is many orders of magnitude removed from the requirements for FTQC. The intimidating challenges associated with integrating such complex systems have already been addressed by the semiconductor industry -hence many qubit makers have retrofitted their technology to be CMOS-compatible. This compatibility, however, can have varying degrees ranging from the mere ability to fabricate qubits using a silicon wafer as a substrate, all the way to the co-integration of qubits with high-yield, low-power advanced electronics to control these qubits. Extrapolating the evolution of quantum processors to future systems, semiconductor spin qubits have unique advantages in this respect, making them one of the most serious contenders for large-scale FTQC. In this review, we focus on the overlap between state-of-the-art semiconductor spin qubit systems and CMOS industry Very Large-Scale Integration (VLSI) principles. We identify the main differences in spin qubit operation, material, and system requirements compared to well-established CMOS industry practices. As key players in the field are looking to collaborate with CMOS industry partners, this review serves to accelerate R&D towards the industrial scale production of FTQC processors., Comment: 36 pages, 5 figures
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- 2024
36. Testing Whether Reported Treatment Effects are Unduly Dependent on the Specific Outcome Measure Used
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Halpin, Peter and Gilbert, Joshua
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Statistics - Methodology - Abstract
This paper addresses the situation in which treatment effects are reported using educational or psychological outcome measures comprised of multiple questions or "items." A distinction is made between a treatment effect on the construct being measured, which is referred to as impact, and item-specific treatment effects that are not due to impact, which are referred to as differential item functioning (DIF). By definition, impact generalizes to other measures of the same construct (i.e., measures that use different items), while DIF is dependent upon the specific items that make up the outcome measure. To distinguish these two cases, two estimators of impact are compared: an estimator that naively aggregates over items, and a less efficient one that is highly robust to DIF. The null hypothesis that both are consistent estimators of the true treatment impact leads to a Hausman-like specification test of whether the naive estimate is affected by item-level variation that would not be expected to generalize beyond the specific outcome measure used. The performance of the test is illustrated with simulation studies and a re-analysis of 34 item-level datasets from 22 randomized evaluations of educational interventions. In the empirical example, the dependence of reported effect sizes on the type of outcome measure (researcher-developed or independently developed) was substantially reduced after accounting for DIF. Implications for the ongoing debate about the role of researcher-developed assessments in education sciences are discussed., Comment: 32 pages, 6 figures
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- 2024
37. Wikipedia in Wartime: Experiences of Wikipedians Maintaining Articles About the Russia-Ukraine War
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Kurek, Laura, Budak, Ceren, and Gilbert, Eric
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Computer Science - Social and Information Networks - Abstract
How do Wikipedians maintain an accurate encyclopedia during an ongoing geopolitical conflict where state actors might seek to spread disinformation or conduct an information operation? In the context of the Russia-Ukraine War, this question becomes more pressing, given the Russian government's extensive history of orchestrating information campaigns. We conducted an interview study with 13 expert Wikipedians involved in the Russo-Ukrainian War topic area on the English-language edition of Wikipedia. While our participants did not perceive there to be clear evidence of a state-backed information operation, they agreed that war-related articles experienced high levels of disruptive editing from both Russia-aligned and Ukraine-aligned accounts. The English-language edition of Wikipedia had existing policies and processes at its disposal to counter such disruption. State-backed or not, the disruptive activity created time-intensive maintenance work for our participants. Finally, participants considered English-language Wikipedia to be more resilient than social media in preventing the spread of false information online. We conclude by discussing sociotechnical implications for Wikipedia and social platforms.
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- 2024
38. Fitting trees to $\ell_1$-hyperbolic distances
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Yim, Joon-Hyeok and Gilbert, Anna C.
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Computer Science - Data Structures and Algorithms ,Computer Science - Machine Learning ,Mathematics - Metric Geometry - Abstract
Building trees to represent or to fit distances is a critical component of phylogenetic analysis, metric embeddings, approximation algorithms, geometric graph neural nets, and the analysis of hierarchical data. Much of the previous algorithmic work, however, has focused on generic metric spaces (i.e., those with no a priori constraints). Leveraging several ideas from the mathematical analysis of hyperbolic geometry and geometric group theory, we study the tree fitting problem as finding the relation between the hyperbolicity (ultrametricity) vector and the error of tree (ultrametric) embedding. That is, we define a vector of hyperbolicity (ultrametric) values over all triples of points and compare the $\ell_p$ norms of this vector with the $\ell_q$ norm of the distortion of the best tree fit to the distances. This formulation allows us to define the average hyperbolicity (ultrametricity) in terms of a normalized $\ell_1$ norm of the hyperbolicity vector. Furthermore, we can interpret the classical tree fitting result of Gromov as a $p = q = \infty$ result. We present an algorithm HCCRootedTreeFit such that the $\ell_1$ error of the output embedding is analytically bounded in terms of the $\ell_1$ norm of the hyperbolicity vector (i.e., $p = q = 1$) and that this result is tight. Furthermore, this algorithm has significantly different theoretical and empirical performance as compared to Gromov's result and related algorithms. Finally, we show using HCCRootedTreeFit and related tree fitting algorithms, that supposedly standard data sets for hierarchical data analysis and geometric graph neural networks have radically different tree fits than those of synthetic, truly tree-like data sets, suggesting that a much more refined analysis of these standard data sets is called for., Comment: 12 pages, 2 figures, 14 pages supplementary. 37th Conference on Neural Information Processing Systems (NeurIPS 2023)
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- 2024
39. Effects of Differentiated Instruction in Flipped Classrooms on Students' Mastery Level and Performance in Quadratic Equations
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Gilbert G. Baybayon and Minie Rose C. Lapinid
- Abstract
This study employed student choice and tiered worksheets as strategies of differentiated instruction on Quadratic Equations in addressing students' non-compliance with assignments in a flipped classroom. In each lesson, students choose among the instructional materials with guide questions to assist them in focusing on key areas during the asynchronous activities as homework. Tiered worksheets were administered in face-to-face classes based on students' readiness as reflected in pre-assessment results. Data from tiered worksheets show students' mastery levels and student engagement in online class instruction and in-class tasks. Additionally, there is a significant difference between pre-assessment and summative assessment percentage scores with a substantial effect size, implying improved student performance in solving quadratic equations.
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- 2024
40. The Challenges Entry-Level Mathematics Teachers Face in Conducting Blended Teaching
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Kereng Gilbert Pule and Lukholo Raxangana
- Abstract
In recent years, there has been an increasing amount of literature on online teaching and learning. Teaching mathematics in the fourth industrial revolution offers entry-level mathematics teachers formidable challenges. Despite using various teaching aids in explaining the learning area, entry-level mathematics teachers, those with zero to three years of teaching experience, have experienced challenges in blended teaching during the COVID-19 pandemic. Such challenges could support the preconceived notion identified by others that the field of learning (mathematics) is difficult. This paper hinged on constructivist epistemology and investigated the challenges that entry-level mathematics teachers face in conducting blended teaching in the Sedibeng West District of Gauteng Province in the Republic of South Africa. Eight entry-level mathematics teachers were purposely sampled from four selected schools that participated in the article. This article adopted a case study design and responses were analysed thematically. The focus group interviews were used as tools to collect data in this study. The study revealed a variety of perceptions that entry-level mathematics teachers shared about the impact of blended teaching in mathematics learning. These included, but were not limited to, the use of teaching programs or software, the effects of load shedding and blended teaching challenges related to learners' performance and behaviour. The results of this study could provide program developers, subject advisors, school principals with other members of the management team, and mathematics teachers to support the entry-level mathematics teacher's confidence, sense of future and communication skills, as well as foster multigenerational connections in blended teaching.
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- 2024
41. Evaluation of Supplemental Instruction in Human Anatomy and Physiology I Using Predicted Grades
- Author
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Gilbert R. Pitts, Amy L. Thompson, Michelle Rogers, James F. Thompson, and Joseph R. Schiller
- Abstract
Human Anatomy and Physiology courses are "gateway" courses that students must pass with high grades in order to proceed through their program of study. However, student pass rates are often low, resulting in students attempting the course multiple times and delaying their graduation. Supplemental instruction performed by peer leaders is one mechanism that has been used to increase student success. The goal of this study was to evaluate the effectiveness of peer-led supplemental instruction by comparing predicted and actual course grades. We learned that students predicted to earn a C achieved higher grades when they utilized supplemental instruction. While those students performed better than predicted, supplemental instruction did not improve ABC rates for the class. We conclude that supplemental instruction can be of benefit for some students.
- Published
- 2024
42. Exploring the Perception and Retention of Movement Analysis Skills through Online Mastery-Based Modules
- Author
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Helena Baert, Larissa True, Matthew Madden, Erica Pratt, and Emily Gilbert
- Abstract
A mixed-methods study was used to determine if an online, mastery-based learning resource was successful in improving content knowledge and retention of critical elements and developmental stages of 16 fundamental movement skills (FMS); a secondary purpose was to determine participant perceptions of their experience with the online resource. Participants (N = 323; motor development (MD) = 94; movement education (ME) = 124; elementary physical education (EPE) = 105) were Teacher Candidates (TCs) in a Physical Education Teacher Education (PETE) Program. Pre- and post-survey data, and pre-, post-, and retention test scores were used to evaluate the program's effectiveness. Paired samples t-tests indicated higher post-test scores for MD ([delta]37.23, p < 0.001, d = 2.32) and ME ([delta]32.12, p < 0.001, d = 1.72). Results from a one-way ANOVA indicated significant improvement and retention of test scores over time, F(3, 331) = 27.761, p < 0.001, [eta-squared] = 0.963. Perceptions of PETE TCs reported positive reactions to the use of the online modules to improve their ability to analyze FMS. Based on these findings, the authors propose that implementing an online, mastery-based resource to analyze FMS may be a positive learning experience for TCs and could lead to long-term content knowledge acquisition of critical elements of FMS.
- Published
- 2024
43. Enrichment Workshops to Encourage Awareness of Employability Skills
- Author
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Janet M. Haresnape, Ruth Gilbert, and Heather Fraser
- Abstract
A series of workshops offered to biology and health sciences students during June and July 2022 was primarily aimed to help students to understand and appreciate the employability benefits of engaging with practical science investigations. Such investigations are designed to help students develop not only practical, numerical and problem-solving skills but also skills such as perseverance, creativity and resilience which are important additional employability skills. Scrutiny of feedback comments submitted by students who attended the workshops indicated that these aims had been achieved. Side-benefits of the programme included an increased sense of community among students, and the provision of an opportunity to maintain engagement over the summer months when there is a break in module presentation for many students, leaving them in danger of losing their study momentum.
- Published
- 2024
44. Facilitating Effective Mathematical Teaching Practices in Preschool
- Author
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Gonulates, Funda and Gilbert, Jasook
- Abstract
Initial seeds for mathematics literacy are planted during early childhood. Children benefit when they are exposed to and provided with opportunities for math experiences that emphasize their holistic development and not just mathematics proficiency in isolation. This way of viewing and presenting mathematics to young children requires teachers who are equipped with strong mathematics teaching skills. This study examined a 21-hour professional development series for public school preschool teachers on early numeracy, geometry, mathematical reasoning, and teaching pedagogies. This professional development series aimed to help preschool teachers incorporate effective mathematical practices and increase their comfort level in teaching mathematics. Participants noted this professional development series impacted their ability to foster children's early numeracy development, engage in "math talk" pose questions that helped children process early numeracy, and contextualize early numeracy through stories and/or word problems. The study demonstrates change takes time, and the impact of this professional development series is dependent on preschool teachers' readiness and their perception of their teaching context needs.
- Published
- 2023
45. Time to Transfer: Long-Term Effects of a Sustained and Spiraled Content Literacy Intervention in the Elementary Grades. EdWorkingPaper No. 23-769
- Author
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Annenberg Institute for School Reform at Brown University, James S. Kim, Joshua B. Gilbert, Jackie E. Relyea, Patrick Rich, Ethan Scherer, Mary A. Burkhauser, and Johanna N. Tvedt
- Abstract
We investigated the effectiveness of a sustained and spiraled content literacy intervention that emphasizes building domain and topic knowledge schemas and vocabulary for elementary-grade students. The Model of Reading Engagement (MORE) intervention underscores thematic lessons that provide an intellectual structure for helping students connect new learning to a general schema in Grade 1 (animal survival), Grade 2 (scientific investigation of past events like dinosaur mass extinctions), and Grade 3 (scientific investigation of living systems). A total of 30 elementary schools (N = 2,870 students) were randomized to a treatment or control condition. In the treatment condition (i.e., full spiral curriculum), students participated in content literacy lessons from Grades 1 to 3 during the school year and wide reading of thematically related informational texts in the summer following Grades 1 and 2. In the control condition (i.e., partial spiral curriculum), students participated in lessons in only Grade 3. The Grade 3 lessons for both conditions were implemented online during the COVID-19 pandemic school year. Results reveal that treatment students outperformed control students on science vocabulary knowledge across all three grades. Furthermore, intent-to-treat analyses revealed positive transfer effects on Grade 3 science reading (ES = 0.14), domain-general reading comprehension (ES = 0.11), and mathematics achievement (ES = 0.12). Treatment impacts were sustained at 14-month follow-up on Grade 4 reading comprehension (ES = 0.12) and mathematics achievement (ES = 0.16). Findings indicate that a content literacy intervention that spirals topics and vocabulary across grades can improve students' long-term academic achievement outcomes.
- Published
- 2023
46. A Review of Attractor Neural Networks and Their Use in Cognitive Science
- Author
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Gilbert, Makenzy Lee
- Subjects
Neural Networks ,Memory ,Memory Processes ,Attractor Neural Networks ,Computational Cognitive Neuroscience ,Computational modeling ,Connectionism ,Dynamical Systems Theory ,Recurrent Neural Networks ,Energy Landscapes ,Pattern Completion ,Cognitive Science ,Attractors ,Dynamics ,Dynamical Systems Theory - Abstract
This literature review explores the role of attractor neural networks (ANNs) in modeling psychological processes in artificial and biological systems. By synthesizing research from dynamical systems theory, psychology, and computational neuroscience, the review provides an overview of the current understanding of ANN function in memory formation, memory reinforcement, retrieval, and forgetting. Key mathematical foundations of ANNs, including dynamical systems theory and energy functions, are discussed to explain the behavior and stability of these networks. The review also examines empirical applications of ANNs in cognitive processes such as semantic memory and episodic recall, as well as highlighting the hippocampus' role in pattern separation and completion. The review addresses challenges like catastrophic forgetting and noise effects on memory retrieval. By identifying gaps between theoretical models and empirical findings, it highlights the interdisciplinary nature of ANN research and suggests future areas for exploration.
- Published
- 2024
47. The Relationship Between Maturation Size and Maximum Tree Size From Tropical to Boreal Climates
- Author
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Journé, Valentin, Bogdziewicz, Michał, Courbaud, Benoit, Kunstler, Georges, Qiu, Tong, Acuña, Marie‐Claire Aravena, Ascoli, Davide, Bergeron, Yves, Berveiller, Daniel, Boivin, Thomas, Bonal, Raul, Caignard, Thomas, Cailleret, Maxime, Calama, Rafael, Camarero, J Julio, Chang‐Yang, Chia‐Hao, Chave, Jerome, Chianucci, Francesco, Curt, Thomas, Cutini, Andrea, Das, Adrian, Daskalakou, Evangelia, Davi, Hendrik, Delpierre, Nicolas, Delzon, Sylvain, Dietze, Michael, Calderon, Sergio Donoso, Dormont, Laurent, Espelta, Josep Maria, Farfan‐Rios, William, Fenner, Michael, Franklin, Jerry, Gehring, Catherine, Gilbert, Gregory, Gratzer, Georg, Greenberg, Cathryn H, Guignabert, Arthur, Guo, Qinfeng, Hacket‐Pain, Andrew, Hampe, Arndt, Han, Qingmin, Hanley, Mick E, Lambers, Janneke Hille Ris, Holík, Jan, Hoshizaki, Kazuhiko, Ibanez, Ines, Johnstone, Jill F, Knops, Johannes MH, Kobe, Richard K, Kurokawa, Hiroko, Lageard, Jonathan, LaMontagne, Jalene, Ledwon, Mateusz, Lefèvre, François, Leininger, Theodor, Limousin, Jean‐Marc, Lutz, James, Macias, Diana, Mårell, Anders, McIntire, Eliot, Moran, Emily V, Motta, Renzo, Myers, Jonathan, Nagel, Thomas A, Naoe, Shoji, Noguchi, Mahoko, Norghauer, Julian, Oguro, Michio, Ourcival, Jean‐Marc, Parmenter, Robert, Pearse, Ian, Pérez‐Ramos, Ignacio M, Piechnik, Łukasz, Podgórski, Tomasz, Poulsen, John, Redmond, Miranda D, Reid, Chantal D, Samonil, Pavel, Scher, C Lane, Schlesinger, William H, Seget, Barbara, Sharma, Shubhi, Shibata, Mitsue, Silman, Miles, Steele, Michael, Stephenson, Nathan, Straub, Jacob, Sutton, Samantha, Swenson, Jennifer J, Swift, Margaret, Thomas, Peter A, Uriarte, Maria, Vacchiano, Giorgio, Whipple, Amy, Whitham, Thomas, Wright, S Joseph, Zhu, Kai, Zimmerman, Jess, Żywiec, Magdalena, and Clark, James S
- Subjects
Biological Sciences ,Ecology ,Trees ,Tropical Climate ,Climate Change ,Reproduction ,Forests ,allometry ,life history ,seed production ,size ,tree fecundity ,tree maturation ,Ecological Applications ,Evolutionary Biology ,Ecological applications ,Environmental management - Abstract
The fundamental trade-off between current and future reproduction has long been considered to result in a tendency for species that can grow large to begin reproduction at a larger size. Due to the prolonged time required to reach maturity, estimates of tree maturation size remain very rare and we lack a global view on the generality and the shape of this trade-off. Using seed production from five continents, we estimate tree maturation sizes for 486 tree species spanning tropical to boreal climates. Results show that a species' maturation size increases with maximum size, but in a non-proportional way: the largest species begin reproduction at smaller sizes than would be expected if maturation were simply proportional to maximum size. Furthermore, the decrease in relative maturation size is steepest in cold climates. These findings on maturation size drivers are key to accurately represent forests' responses to disturbance and climate change.
- Published
- 2024
48. A systematic search for RNA structural switches across the human transcriptome
- Author
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Khoroshkin, Matvei, Asarnow, Daniel, Zhou, Shaopu, Navickas, Albertas, Winters, Aidan, Goudreau, Jackson, Zhou, Simon K, Yu, Johnny, Palka, Christina, Fish, Lisa, Borah, Ashir, Yousefi, Kian, Carpenter, Christopher, Ansel, K Mark, Cheng, Yifan, Gilbert, Luke A, and Goodarzi, Hani
- Subjects
Biological Sciences ,Bioinformatics and Computational Biology ,Genetics ,Human Genome ,1.1 Normal biological development and functioning ,Humans ,Transcriptome ,Nucleic Acid Conformation ,3' Untranslated Regions ,RNA ,Sulfuric Acid Esters ,Nonsense Mediated mRNA Decay ,Cryoelectron Microscopy ,Computational Biology ,Technology ,Medical and Health Sciences ,Developmental Biology ,Biological sciences - Abstract
RNA structural switches are key regulators of gene expression in bacteria, but their characterization in Metazoa remains limited. Here, we present SwitchSeeker, a comprehensive computational and experimental approach for systematic identification of functional RNA structural switches. We applied SwitchSeeker to the human transcriptome and identified 245 putative RNA switches. To validate our approach, we characterized a previously unknown RNA switch in the 3' untranslated region of the RORC (RAR-related orphan receptor C) transcript. In vivo dimethyl sulfate (DMS) mutational profiling with sequencing (DMS-MaPseq), coupled with cryogenic electron microscopy, confirmed its existence as two alternative structural conformations. Furthermore, we used genome-scale CRISPR screens to identify trans factors that regulate gene expression through this RNA structural switch. We found that nonsense-mediated messenger RNA decay acts on this element in a conformation-specific manner. SwitchSeeker provides an unbiased, experimentally driven method for discovering RNA structural switches that shape the eukaryotic gene expression landscape.
- Published
- 2024
49. The TESS-Keck Survey. XXII. A Sub-Neptune Orbiting TOI-1437
- Author
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Pidhorodetska, Daria, Gilbert, Emily A, Kane, Stephen R, Barclay, Thomas, Polanski, Alex S, Hill, Michelle L, Stassun, Keivan G, Giacalone, Steven, Ciardi, David R, Boyle, Andrew W, Howell, Steve B, Lillo-Box, Jorge, MacDougall, Mason G, Fetherolf, Tara, Batalha, Natalie M, Crossfield, Ian JM, Dressing, Courtney, Fulton, Benjamin, Howard, Andrew W, Huber, Daniel, Isaacson, Howard, Petigura, Erik A, Robertson, Paul, Weiss, Lauren M, Angelo, Isabel, Beard, Corey, Behmard, Aida, Blunt, Sarah, Brinkman, Casey L, Chontos, Ashley, Dai, Fei, Dalba, Paul A, Holcomb, Rae, Lubin, Jack, Mayo, Andrew W, Murphy, Joseph M Akana, Rice, Malena, Rubenzahl, Ryan, Scarsdale, Nicholas, Turtelboom, Emma V, Tyler, Dakotah, Van Zandt, Judah, and Schwieterman, Edward W
- Subjects
Space Sciences ,Physical Sciences ,Astronomical Sciences ,Astronomical and Space Sciences ,Astronomy & Astrophysics ,Astronomical sciences ,Particle and high energy physics - Abstract
Exoplanet discoveries have revealed a dramatic diversity of planet sizes across a vast array of orbital architectures. Sub-Neptunes are of particular interest; due to their absence in our own solar system, we rely on demographics of exoplanets to better understand their bulk composition and formation scenarios. Here, we present the discovery and characterization of TOI-1437 b, a sub-Neptune with a 18.84 day orbit around a near-solar analog (M⋆ = 1.10 ± 0.10 M☉, R⋆=1.17 ± 0.12 R☉). The planet was detected using photometric data from the Transiting Exoplanet Survey Satellite (TESS) mission and radial velocity (RV) follow-up observations were carried out as a part of the TESS-Keck Survey using both the HIRES instrument at Keck Observatory and the Levy Spectrograph on the Automated Planet Finder telescope. A combined analysis of these data reveal a planet radius of Rp = 2.24 ± 0.23 R⊕ and a mass measurement of Mp = 9.6 ± 3.9 M⊕). TOI-1437 b is one of few (∼50) known transiting sub-Neptunes orbiting a solar-mass star that has a RV mass measurement. As the formation pathway of these worlds remains an unanswered question, the precise mass characterization of TOI-1437 b may provide further insight into this class of planet.
- Published
- 2024
50. A Deep-Learning-Based Label-free No-Reference Image Quality Assessment Metric: Application in Sodium MRI Denoising
- Author
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Yuan, Shuaiyu, Whitmarsh, Tristan, Kessler, Dimitri A, Arponen, Otso, McLean, Mary A, Baxter, Gabrielle, Riemer, Frank, Kennerley, Aneurin J, Brackenbury, William J, Gilbert, Fiona J, and Kaggie, Joshua D
- Subjects
Electrical Engineering and Systems Science - Image and Video Processing ,Computer Science - Computer Vision and Pattern Recognition - Abstract
New multinuclear MRI techniques, such as sodium MRI, generally suffer from low image quality due to an inherently low signal. Postprocessing methods, such as image denoising, have been developed for image enhancement. However, the assessment of these enhanced images is challenging especially considering when there is a lack of high resolution and high signal images as reference, such as in sodium MRI. No-reference Image Quality Assessment (NR-IQA) metrics are approaches to solve this problem. Existing learning-based NR-IQA metrics rely on labels derived from subjective human opinions or metrics like Signal-to-Noise Ratio (SNR), which are either time-consuming or lack accurate ground truths, resulting in unreliable assessment. We note that deep learning (DL) models have a unique characteristic in that they are specialized to a characteristic training set, meaning that deviations between the input testing data from the training data will reduce prediction accuracy. Therefore, we propose a novel DL-based NR-IQA metric, the Model Specialization Metric (MSM), which does not depend on ground-truth images or labels. MSM measures the difference between the input image and the model's prediction for evaluating the quality of the input image. Experiments conducted on both simulated distorted proton T1-weighted MR images and denoised sodium MR images demonstrate that MSM exhibits a superior evaluation performance on various simulated noises and distortions. MSM also has a substantial agreement with the expert evaluations, achieving an averaged Cohen's Kappa coefficient of 0.6528, outperforming the existing NR-IQA metrics., Comment: 13 pages, 3 figures
- Published
- 2024
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