22 results on '"Ferrari DM"'
Search Results
2. International Forum on Transfusion Education for Healthcare Professionals Who Administer Blood to Patients in Hospitals and Health Services: Responses.
- Author
-
Al-Riyami AZ, Bielby L, Moss R, Rahimi-Levene N, O'Kane A, Hess JR, Saba NE, Kim KH, Arora S, Dua S, Barrett CL, Gonzalez CA, Ferrari DM, Cini PV, Kumagawa M, O'Reilly C, Thrift L, Wendel S, Fachini R, Dias LFS, Tran D, Steinsvåg CT, and Dunbar N
- Subjects
- Humans, Hospitals, Health Services, Delivery of Health Care, Blood Transfusion, Health Personnel
- Published
- 2023
- Full Text
- View/download PDF
3. International Forum on the Collection and Use of COVID-19 Convalescent Plasma: Protocols, Challenges and Lessons Learned: Summary.
- Author
-
Al-Riyami AZ, Burnouf T, Yazer M, Triulzi D, Kumaş LT, Sağdur L, Pelit NB, Bazin R, Hindawi SI, Badawi MA, Patidar GK, Pandey HC, Chaurasia R, Fachini RM, Scuracchio P, Wendel S, Ang AL, Ong KH, Young P, Ihalainen J, Vierikko A, Qiu Y, Yang R, Xu H, Rahimi-Levene N, Shinar E, Izak M, Gonzalez CA, Ferrari DM, Cini PV, Aditya RN, Sharma RR, Sachdev S, Hans R, Lamba DS, Nissen-Meyer LSH, Devine DV, Lee CK, Leung JN, Hung IFN, Tiberghien P, Gallian P, Morel P, Al Maamari K, Al-Hinai Z, Vrielink H, So-Osman C, De Angelis V, Berti P, Ostuni A, Marano G, Nevessignsky MT, El Ekiaby M, Daly J, Hoad V, Kim S, van den Berg K, Vermeulen M, Glatt TN, Schäfer R, Reik R, Gammon R, Lopez M, Estcourt L, MacLennan S, Roberts D, Louw V, and Dunbar N
- Subjects
- Humans, Immunization, Passive, SARS-CoV-2, COVID-19 Serotherapy, COVID-19 therapy, Coronavirus Infections
- Published
- 2021
- Full Text
- View/download PDF
4. International Forum on the Collection and Use of COVID-19 Convalescent Plasma: Responses.
- Author
-
Al-Riyami AZ, Burnouf T, Yazer M, Triulzi D, Kumaş LT, Sağdur L, Pelit NB, Bazin R, Hindawi SI, Badawi MA, Patidar GK, Pandey HC, Chaurasia R, Fachini RM, Scuracchio P, Wendel S, Ang AL, Ong KH, Young P, Ihalainen J, Vierikko A, Qiu Y, Yang R, Xu H, Rahimi-Levene N, Shinar E, Izak M, Gonzalez CA, Ferrari DM, Cini PV, Aditya RN, Sharma RR, Sachdev S, Hans R, Lamba DS, Nissen-Meyer LSH, Devine DV, Lee CK, Leung JN, Hung IFN, Tiberghien P, Gallian P, Morel P, Al Maamari K, Al-Hinai Z, Vrielink H, So-Osman C, De Angelis V, Berti P, Ostuni A, Marano G, Nevessignsky MT, El Ekiaby M, Daly J, Hoad V, Kim S, van den Berg K, Vermeulen M, Glatt TN, Schäfer R, Reik R, Gammon R, Lopez M, Estcourt L, MacLennan S, Roberts D, Louw V, and Dunbar N
- Published
- 2021
- Full Text
- View/download PDF
5. Efficient removal of black henna tattoos.
- Author
-
Ferrari DM, Hoffmann JC, Schön MP, and Lippert U
- Subjects
- Coloring Agents adverse effects, Humans, Phenylenediamines, Dermatitis, Allergic Contact etiology, Naphthoquinones adverse effects, Tattooing adverse effects
- Abstract
Background/objectives: Para-phenylenediamine, a dye frequently added to henna tattoos to create the black color, is a potent contact allergen. Severe contact dermatitis may arise within days even after the first application. Our objective was to develop a method for rapid and complete removal of para-phenylenediamine-containing black henna tattoos from the skin, an important problem many physicians are confronted with, but for which no simple method exists., Methods: A database search revealed polyethylene glycol 400, described in removal of ortho-phenylenediamine from contaminated skin. We therefore investigated its use in removal of the structurally related ortholog para-phenylenediamine present in black henna tattoos., Results: A protocol was established involving repeated cycles of rinsing of the skin with polyethylene glycol 400 solution. In 5 patients, one of whom had already developed a severe blistering contact dermatitis and another a mild erosive dermatitis, black henna tattoos were successfully removed. Removal was completed in a single session of 1 hour or less, depending on tattoo size, with a maximum of 6 rinse cycles., Conclusions: We provide a simple and safe method for rapid and effective removal of black henna tattoos. This procedure requires no special equipment and can be applied in virtually any setting., (© 2020 Wiley Periodicals LLC.)
- Published
- 2020
- Full Text
- View/download PDF
6. Hereditäres Angioödem in einer Familie mit spezifischen Mutationen sowohl im Plasminogen- als auch im SERPING1-Gen.
- Author
-
Bork K, Zibat A, Ferrari DM, Wollnik B, Schön MP, Wulff K, and Lippert U
- Published
- 2020
- Full Text
- View/download PDF
7. Hereditary angioedema in a single family with specific mutations in both plasminogen and SERPING1 genes.
- Author
-
Bork K, Zibat A, Ferrari DM, Wollnik B, Schön MP, Wulff K, and Lippert U
- Subjects
- Adolescent, Adult, Child, Child, Preschool, Family, Female, Humans, Male, Middle Aged, Mutation, Missense, Phenotype, Young Adult, Angioedemas, Hereditary genetics, Complement C1 Inhibitor Protein genetics, Mutation, Plasminogen genetics
- Abstract
Background: Hereditary angioedema (HAE) is a group of genetic diseases characterized by recurrent, painful and potentially lethal tissue swelling. The most common form results from mutations in the SERPING1 gene, leading to reduced function of complement 1 inhibitor (C1-INH). Rarer forms with normal C1-INH may arise from mutations in the coagulation factor F12 gene, but mostly the genetic background is unknown. Recently, a novel HAE mutation in the plasminogen (PLG) gene was shown., Patients and Methods: We analyzed the various clinical manifestations of HAE in 14 related patients using clinical data, biochemical analysis for C1-INH and C4 as well as gene sequencing., Results: Patients' symptoms were assigned to two different forms of HAE. In ten patients suffering from swelling of the lips or tongue but not of the extremities, a mutation in the PLG gene (c.988A>G) was found whereas in the only four patients with swelling of the gastrointestinal tract and extremities, a mutation in the SERPING1 gene (c.1480C>T) was identified. In two cases this was additional to PLG c.988A>G., Conclusions: This unique finding of two different HAE-specific mutations in a large family not only explains the divergent phenotypes but also supports a genotype-phenotype correlation showing that abdominal attacks and swelling of the extremities are common with HAE-C1-INH but unusual with HAE-PLG., (© 2020 Deutsche Dermatologische Gesellschaft (DDG). Published by John Wiley & Sons Ltd.)
- Published
- 2020
- Full Text
- View/download PDF
8. ERp29 deficiency affects sensitivity to apoptosis via impairment of the ATF6-CHOP pathway of stress response.
- Author
-
Hirsch I, Weiwad M, Prell E, and Ferrari DM
- Subjects
- Animals, Apoptosis drug effects, Endoplasmic Reticulum Stress drug effects, Fibroblasts cytology, Fibroblasts drug effects, Fibroblasts metabolism, Hydrogen Peroxide pharmacology, Mice, Mice, Inbred C57BL, Mice, Knockout, Oxidants pharmacology, Protein Synthesis Inhibitors pharmacology, Signal Transduction, Skin cytology, Thyroid Gland cytology, Tunicamycin pharmacology, Unfolded Protein Response drug effects, Unfolded Protein Response physiology, Activating Transcription Factor 6 metabolism, Apoptosis genetics, Endoplasmic Reticulum Stress physiology, Heat-Shock Proteins genetics, Transcription Factor CHOP metabolism
- Abstract
Endoplasmic reticulum protein 29 (ERp29) belongs to the redox-inactive PDI-Dβ-subfamily of PDI-proteins. ERp29 is expressed in all mammalian tissues examined. Especially high levels of expression were observed in secretory tissues and in some tumors. However, the biological role of ERp29 remains unclear. In the present study we show, by using thyrocytes and primary dermal fibroblasts from adult ERp29(-/-) mice, that ERp29 deficiency affects the activation of the ATF6-CHOP-branch of unfolded protein response (UPR) without influencing the function of other UPR branches, like the ATF4-eIF2α-XBP1 signaling pathway. As a result of impaired ATF6 activation, dermal fibroblasts and adult thyrocytes from ERp29(-/-) mice display significantly lower apoptosis sensitivities when treated with tunicamycin and hydrogen peroxide. However, in contrast to previous reports, we could demonstrate that ERp29 deficiency does not alter thyroglobulin expression levels. Therefore, our study suggests that ERp29 acts as an escort factor for ATF6 and promotes its transport from ER to Golgi apparatus under ER stress conditions.
- Published
- 2014
- Full Text
- View/download PDF
9. Peptide binding by catalytic domains of the protein disulfide isomerase-related protein ERp46.
- Author
-
Funkner A, Parthier C, Schutkowski M, Zerweck J, Lilie H, Gyrych N, Fischer G, Stubbs MT, and Ferrari DM
- Subjects
- Catalytic Domain, Crystallography, X-Ray, Humans, Models, Molecular, Protein Binding, Protein Conformation, Protein Disulfide-Isomerases chemistry, Protein Disulfide-Isomerases metabolism
- Abstract
The protein disulfide isomerase (PDI) family member ERp46/endoPDI/thioredoxin domain-containing protein 5 is preferentially expressed in a limited number of tissues, where it may function as a survival factor for nitrosative stress in vivo. It is involved in insulin production as well as in adiponectin signaling and interacts specifically with the redox-regulatory endoplasmic reticulum proteins endoplasmic oxidoreductin 1α (Ero1α) and peroxiredoxin-4. Here, we show that ERp46, although lacking a PDI-like redox-inactive b'-thioredoxin domain with its hydrophobic substrate binding site, is able to bind to a large pool of peptides containing aromatic and basic residues via all three of its catalytic domains (a(0), a and a'), though the a(0) domain may contain the primary binding site. ERp46, which shows relatively higher activity as a disulfide-reductase than as an oxidase/isomerase in vitro compared to PDI and ERp57, possesses chaperone activity in vivo, a property also shared by the C-terminal a' domain. A crystal structure of the a' domain is also presented, offering a view of possible substrate binding sites within catalytic domains of PDI proteins., (Copyright © 2013 Elsevier Ltd. All rights reserved.)
- Published
- 2013
- Full Text
- View/download PDF
10. Crystal structure and functional analysis of the protein disulfide isomerase-related protein ERp29.
- Author
-
Barak NN, Neumann P, Sevvana M, Schutkowski M, Naumann K, Malesević M, Reichardt H, Fischer G, Stubbs MT, and Ferrari DM
- Subjects
- Amino Acid Sequence, Animals, Binding Sites, Crystallography, X-Ray, Dimerization, Drosophila Proteins chemistry, Heat-Shock Proteins genetics, Humans, Molecular Sequence Data, Mutation, Peptides chemistry, Protein Binding, Protein Structure, Tertiary, Substrate Specificity, Thioredoxins chemistry, Thyroglobulin chemistry, Heat-Shock Proteins chemistry, Models, Molecular
- Abstract
The protein disulfide isomerase-related protein ERp29 is a putative chaperone involved in processing and secretion of secretory proteins. Until now, however, both the structure and the exact nature of interacting substrates remained unclear. We provide for the first time a crystal structure of human ERp29, refined to 2.9 A, and show that the protein has considerable structural homology to its Drosophila homolog Wind. We show that ERp29 binds directly not only to thyroglobulin and thyroglobulin-derived peptides in vitro but also to the Wind client protein Pipe and Pipe-derived peptides, although it fails to process Pipe in vivo. A monomeric mutant of ERp29 and a D domain mutant in which the second peptide binding site is inactivated also bind protein substrates, indicating that the monomeric thioredoxin domain is sufficient for client protein binding. Indeed, the b domains of ERp29 or Wind, expressed alone, are sufficient for binding proteins and peptides. Interacting peptides have in common two or more aromatic residues, with stronger binding for sequences with overall basic character. Thus, the data allow a view of the two putative peptide binding sites of ERp29 and indicate that the apparent, different processing activity of the human and Drosophila proteins in vivo does not stem from differences in peptide binding properties.
- Published
- 2009
- Full Text
- View/download PDF
11. A possible biochemical link between NADPH oxidase (Nox) 1 redox-signalling and ERp72.
- Author
-
Chen W, Shang WH, Adachi Y, Hirose K, Ferrari DM, and Kamata T
- Subjects
- Animals, COS Cells, Caco-2 Cells, Chlorocebus aethiops, Endoplasmic Reticulum metabolism, Humans, NADPH Oxidase 1, Oxidation-Reduction, Reactive Oxygen Species metabolism, Membrane Glycoproteins metabolism, NADH, NADPH Oxidoreductases metabolism, Signal Transduction
- Abstract
Emerging evidence indicates that Nox (NADPH oxidase) 1-generated ROS (reactive oxygen species) play critical regulatory roles in various cellular processes, yet little is known of direct targets for the oxidase. In the present study we show that one of the proteins selectively oxidized in response to Nox1-generated ROS was ERp72 (endoplasmic reticulum protein 72 kDa) with TRX (thioredoxin) homology domains. Oxidation of ERp72 by Nox1 resulted in an inhibition of its reductase activity. EGF treatment of cells stimulated the Nox1 activity and the activated Nox1 subsequently mediated EGF-induced suppression of the ERp72 reductase activity. Co-immunoprecipitation, GST (glutathione transferase) pulldown assays and mutational analysis, indicated that Nox1 associates with ERp72, which involves its N-terminus encompassing a Ca(2+)-binding site and the first TRX-like motif. Furthermore, confocal microscopy showed co-localization between Nox1 and ERp72 at the plasma membrane. These results suggest that Nox1 functionally associates with ERp72, regulating redox-sensitive signalling pathways in a cellular context.
- Published
- 2008
- Full Text
- View/download PDF
12. CD137 ligand reverse signaling has multiple functions in human dendritic cells during an adaptive immune response.
- Author
-
Lippert U, Zachmann K, Ferrari DM, Schwarz H, Brunner E, Mahbub-Ul Latif AH, Neumann C, and Soruri A
- Subjects
- Animals, Antigens immunology, Biomarkers, Cell Differentiation immunology, Cell Movement immunology, Cell Proliferation, Cells, Cultured, Dendritic Cells cytology, Dendritic Cells metabolism, Epitopes immunology, Humans, Mice, Mice, SCID, Receptors, CCR7 immunology, Receptors, CCR7 metabolism, Th1 Cells immunology, Tumor Necrosis Factor-alpha biosynthesis, Tumor Necrosis Factor-alpha immunology, Up-Regulation immunology, 4-1BB Ligand immunology, Adaptation, Physiological immunology, Dendritic Cells immunology, Signal Transduction immunology
- Abstract
T cell activation via dendritic cells (DC) is an important step in the adaptive immune response, which requires DC maturation, migration to lymph nodes and presentation of antigen to T cells. CD137 receptor expressed on activated T cells is a potent costimulatory molecule. Here, we investigated the functions of CD137 ligand (CD137L) in human monocyte-derived DC during an immune response. Cross-linking of CD137L on DC leads to cell maturation in an autocrine fashion, mostly via release of TNF-alpha. Reverse signaling of CD137L also mediates migration of DC via up-regulation of the CCR7 chemokine receptor, demonstrated by an in vivo MIP-3beta-dependent SCID mouse migration model. Finally, CD137L-activated DC induce differentiation of human T cells into potent Th1 effectors. Cocultivation of autologous T cells and CD137L-activated DC in an antigen-specific reaction leads to T cell proliferation and the release of IL-12p70 and IFN-gamma. These findings deliver new insights into the multiple effects of reverse signaling of CD137L in human DC during the initiation of an adaptive immune response, including the key features of DC maturation, migration and, ultimately, antigen-specific T cell differentiation.
- Published
- 2008
- Full Text
- View/download PDF
13. Endobrevin/VAMP8 mediates exocytotic release of hexosaminidase from rat basophilic leukaemia cells.
- Author
-
Lippert U, Ferrari DM, and Jahn R
- Subjects
- Animals, Bacterial Proteins pharmacology, Basophils drug effects, Calcium pharmacology, Cell Line, Tumor, Cell Membrane Permeability drug effects, Leukemia genetics, R-SNARE Proteins genetics, Rats, Streptolysins pharmacology, Vesicle-Associated Membrane Protein 2 metabolism, Vesicle-Associated Membrane Protein 3 metabolism, Basophils metabolism, Exocytosis drug effects, Hexosaminidases metabolism, Leukemia metabolism, R-SNARE Proteins metabolism
- Abstract
Mast cells are important players in innate immunity and mediate allergic responses. Upon stimulation, they release biologically active mediators including histamine, cytokines and lysosomal hydrolases. We used permeabilized rat basophilic leukaemia cells as model to identify R-SNAREs (soluble NSF (N-ethylmaleimide-sensitive fusion protein)) mediating exocytosis of hexosaminidase from mast cells. Of a complete set of recombinant mammalian R-SNAREs, only vesicle associated membrane protein (VAMP8)/endobrevin consistently blocked hexosaminidase release, which was also insensitive to treatment with clostridial neurotoxins. Thus, VAMP8, which also mediates fusion of late endosomes and lysosomes, plays a major role in hexosaminidase release, strengthening the view that mast cell granules share properties of both secretory granules and lysosomes.
- Published
- 2007
- Full Text
- View/download PDF
14. Conserved structural and functional properties of D-domain containing redox-active and -inactive protein disulfide isomerase-related protein chaperones.
- Author
-
Lippert U, Diao D, Barak NN, and Ferrari DM
- Subjects
- Amino Acid Sequence, Animals, Binding Sites, COS Cells, Chlorocebus aethiops, Conserved Sequence, Dimerization, Enzyme Activation, Heat-Shock Proteins genetics, Humans, Molecular Sequence Data, Mutation genetics, Oxidation-Reduction, Peptides genetics, Peptides metabolism, Protein Disulfide-Isomerases genetics, Rats, Sequence Alignment, Heat-Shock Proteins metabolism, Protein Disulfide-Isomerases chemistry, Protein Disulfide-Isomerases metabolism
- Abstract
The structure and mode of binding of the endoplasmic reticulum protein disulfide isomerase-related proteins to their substrates is currently a focus of intensive research. We have recently determined the crystal structure of the Drosophila melanogaster protein disulfide isomerase-related protein Wind and have described two essential substrate binding sites within the protein, one within the thioredoxin b-domain and another within the C-terminal D-domain. Although a mammalian ortholog of Wind (ERp29/28) is known, conflicting interpretations of its structure and putative function have been postulated. Here, we have provided evidence indicating that ERp29 is indeed similar in both structure and function to its Drosophila ortholog. Using a site-directed mutagenesis approach, we have demonstrated that homodimerization of the b-domains is significantly reduced in vitro upon replacement of key residues at the predicted dimerization interface. Investigation of Wind-ERp29 fusion constructs showed that mutants of the D-domain of ERp29 prevent transport of a substrate protein (Pipe) in a manner consistent with the presence of a discrete, conserved peptide binding site in the D-domain. Finally, we have highlighted the general applicability of these findings by showing that the D-domain of a redox-active disulfide isomerase, from the slime mold Dictyostelium discoideum, can also functionally replace the Wind D-domain in vivo.
- Published
- 2007
- Full Text
- View/download PDF
15. Structural elucidation of the PDI-related chaperone Wind with the help of mutants.
- Author
-
Sevvana M, Biadene M, Ma Q, Guo C, Söling HD, Sheldrick GM, and Ferrari DM
- Subjects
- Amino Acid Substitution, Binding Sites, Crystallography, X-Ray, Dimerization, Drosophila Proteins classification, Drosophila Proteins genetics, Histidine chemistry, Hydrophobic and Hydrophilic Interactions, Molecular Chaperones classification, Molecular Chaperones genetics, Mutation, Oligopeptides chemistry, Drosophila Proteins chemistry, Models, Molecular, Molecular Chaperones chemistry
- Abstract
The structures of the PDI-related protein Wind (with a C-terminal His(6) tag) and the mutants Y53S, Y53F and Y55K have been determined and compared with the wild-type structure with the His(6) tag at the N-terminus. All five structures show the same mode of dimerization, showing that this was not an artefact introduced by the nearby N-terminal His(6) tag and suggesting that this dimer may also be the biologically active form. Although the mutants Y53S and Y55K completely abrogate transport of the protein Pipe (which appears to be the primary function of Wind in the cell), only subtle differences can be seen in the putative Pipe-binding region. The Pipe binding in the active forms appears to involve hydrophobic interactions between aromatic systems, whereas the inactive mutants may be able to bind more strongly with the help of hydrogen bonds, which could disturb the delicate equilibrium required for effective Pipe transport.
- Published
- 2006
- Full Text
- View/download PDF
16. Mapping of a substrate binding site in the protein disulfide isomerase-related chaperone wind based on protein function and crystal structure.
- Author
-
Barnewitz K, Guo C, Sevvana M, Ma Q, Sheldrick GM, Söling HD, and Ferrari DM
- Subjects
- Amino Acid Sequence, Animals, Aspartic Acid chemistry, Binding Sites, COS Cells, Chlorocebus aethiops, Crystallography, Dimerization, Drosophila Proteins genetics, Gene Expression, Hydrophobic and Hydrophilic Interactions, Molecular Chaperones genetics, Molecular Sequence Data, Oxidation-Reduction, Protein Disulfide-Isomerases genetics, Protein Structure, Tertiary, Substrate Specificity, Sulfotransferases genetics, Sulfotransferases metabolism, Thioredoxins chemistry, Tyrosine chemistry, Vero Cells, Drosophila genetics, Drosophila Proteins chemistry, Drosophila Proteins metabolism, Molecular Chaperones chemistry, Molecular Chaperones metabolism
- Abstract
The protein disulfide isomerase (PDI)-related protein Wind is essential in Drosophila melanogaster, and is required for correct targeting of Pipe, an essential Golgi transmembrane 2-O-sulfotransferase. Apart from a thioredoxin fold domain present in all PDI proteins, Wind also has a unique C-terminal D-domain found only in PDI-D proteins. Here, we show that Pipe processing requires dimeric Wind, which interacts directly with the soluble domain of Pipe in vitro, and we map an essential substrate binding site in Wind to the vicinity of an exposed cluster of tyrosines within the thioredoxin fold domain. In vitro, binding occurs to multiple sites within the Pipe polypeptide and shows specificity for two consecutive aromatic residues. A second site in Wind, formed by a cluster of residues within the D-domain, is likewise required for substrate processing. This domain, expressed separately, impairs Pipe processing by the full-length Wind protein, indicating competitive binding to substrate. Our data represent the most accurate map of a peptide binding site in a PDI-related protein available to date and directly show peptide specificity for a naturally occurring substrate.
- Published
- 2004
- Full Text
- View/download PDF
17. Crystal structure and functional analysis of Drosophila Wind, a protein-disulfide isomerase-related protein.
- Author
-
Ma Q, Guo C, Barnewitz K, Sheldrick GM, Soling HD, Uson I, and Ferrari DM
- Subjects
- Amino Acid Sequence, Animals, COS Cells, Cloning, Molecular, Crystallization, Crystallography, X-Ray, Dimerization, Drosophila Proteins genetics, Drosophila melanogaster embryology, Drosophila melanogaster genetics, Endoplasmic Reticulum metabolism, Fluorescent Antibody Technique, Gene Expression, Models, Molecular, Molecular Sequence Data, Molecular Structure, Molecular Weight, Mutation, Protein Structure, Secondary, Recombinant Proteins, Sequence Alignment, Structure-Activity Relationship, Sulfotransferases metabolism, Thioredoxins chemistry, Transfection, Drosophila Proteins chemistry, Drosophila Proteins physiology, Drosophila melanogaster chemistry
- Abstract
In the developing Drosophila melanogaster embryo, dorsal-ventral patterning displays an absolute requirement for the product of the essential windbeutel gene, Wind. In homozygous windbeutel mutant flies, dorsal-ventral patterning fails to initiate because of the failure of the Golgi-resident proteoglycan-modifying protein, Pipe, to exit the endoplasmic reticulum, and this leads to the death of the embryo. Here, we describe the three-dimensional structure of Wind at 1.9-A resolution and identify a candidate surface for interaction with Pipe. This represents the first crystal structure of a eukaryotic protein-disulfide isomerase-related protein of the endoplasmic reticulum to be described. The dimeric protein is composed of an N-terminal thioredoxin domain and a C-terminal alpha-helical domain unique to protein-disulfide isomerase D proteins. Although Wind carries a CXXC motif that is partially surface accessible, this motif is redox inactive, and the cysteines are not required for the targeting of Pipe to the Golgi. However, both domains are required for targeting Pipe to the Golgi, and, although the mouse homologue ERp28 cannot replace the function of Wind, exchange of the Wind D-domain with that of ERp28 allows for efficient Golgi transport of Pipe.
- Published
- 2003
- Full Text
- View/download PDF
18. Functional roles and efficiencies of the thioredoxin boxes of calcium-binding proteins 1 and 2 in protein folding.
- Author
-
Kramer B, Ferrari DM, Klappa P, Pöhlmann N, and Söling HD
- Subjects
- Amino Acid Sequence, Amino Acid Substitution, Animals, Calcium-Binding Proteins genetics, Carboxypeptidases chemistry, Carboxypeptidases metabolism, Cathepsin A, Endoplasmic Reticulum metabolism, Kinetics, Mutagenesis, Site-Directed, Plasmids, Promoter Regions, Genetic, Protein Denaturation, Protein Disulfide-Isomerases genetics, Protein Disulfide-Isomerases metabolism, Rats, Ribonucleases chemistry, Ribonucleases metabolism, Saccharomyces cerevisiae genetics, Sulfur-Sulfur Bond Isomerases genetics, Thioredoxins metabolism, Calcium-Binding Proteins chemistry, Calcium-Binding Proteins metabolism, Protein Folding, Saccharomyces cerevisiae enzymology, Sulfur-Sulfur Bond Isomerases chemistry, Sulfur-Sulfur Bond Isomerases metabolism, Thioredoxins chemistry
- Abstract
The rat luminal endoplasmic-recticulum calcium-binding proteins 1 and 2 (CaBP1 and CaBP2 respectively) are members of the protein disulphide-isomerase (PDI) family. They contain two and three thioredoxin boxes (Cys-Gly-His-Cys) respectively and, like PDI, may be involved in the folding of nascent proteins. We demonstrate here that CaBP1, similar to PDI and CaBP2, can complement the lethal phenotype of the disrupted Saccharomyces cerevisiae PDI gene, provided that the natural C-terminal Lys-Asp-Glu-Leu sequence is replaced by His-Asp-Glu-Leu. Both the in vitro RNase AIII-re-activation assays and in vivo pro-(carboxypeptidase Y) processing assays using CaBP1 and CaBP2 thioredoxin (trx)-box mutants revealed that, whereas the three trx boxes in CaBP2 seem to be functionally equivalent, the first trx box of CaBP1 is significantly more active than the second trx box. Furthermore, only about 65% re-activation of denatured reduced RNase AIII could be obtained with CaBP1 or CaBP2 compared with PDI, and the yield of PDI-catalysed reactions was significantly reduced in the presence of either CaBP1 or CaBP2. In contrast with PDI, neither CaBP1 nor CaBP2 could catalyse the renaturation of denatured glyceraldehyde-3-phosphate dehydrogenase (GAPDH), which is a redox-independent process, and neither protein had any effect on the PDI-catalysed refolding of GAPDH. Furthermore, although PDI can bind peptides via its b' domain, a property it shares with PDIp, the pancreas-specific PDI homologue, and although PDI can bind malfolded proteins such as 'scrambled' ribonuclease, no such interactions could be detected for CaBP2. We conclude that: (1) both CaBP2 and CaBP1 lack peptide-binding activity for GAPDH attributed to the C-terminal region of the a' domain of PDI; (2) CaBP2 lacks the general peptide-binding activity attributed to the b' domain of PDI; (3) interaction of CaBP2 with substrate (RNase AIII) is different from that of PDI and substrate; and (4) both CaBP2 and CaBP1 may promote oxidative folding by different kinetic pathways.
- Published
- 2001
- Full Text
- View/download PDF
19. Identification of a novel saturable endoplasmic reticulum localization mechanism mediated by the C-terminus of a Dictyostelium protein disulfide isomerase.
- Author
-
Monnat J, Neuhaus EM, Pop MS, Ferrari DM, Kramer B, and Soldati T
- Subjects
- Amino Acid Sequence, Animals, Cycloheximide pharmacology, Dictyostelium enzymology, Dictyostelium ultrastructure, Endoplasmic Reticulum ultrastructure, Genes, Reporter, Green Fluorescent Proteins, Humans, Luminescent Proteins genetics, Molecular Sequence Data, Oligopeptides, Protein Disulfide-Isomerases genetics, Protein Sorting Signals, Protein Transport, Rats, Recombinant Fusion Proteins chemistry, Recombinant Fusion Proteins metabolism, Sequence Alignment, Sequence Deletion, Sequence Homology, Amino Acid, Signal Transduction, Dictyostelium physiology, Endoplasmic Reticulum physiology, Protein Disulfide-Isomerases chemistry, Protein Disulfide-Isomerases metabolism
- Abstract
Localization of soluble endoplasmic reticulum (ER) resident proteins is likely achieved by the complementary action of retrieval and retention mechanisms. Whereas the machinery involving the H/KDEL and related retrieval signals in targeting escapees back to the ER is well characterized, other mechanisms including retention are still poorly understood. We have identified a protein disulfide isomerase (Dd-PDI) lacking the HDEL retrieval signal normally found at the C terminus of ER residents in Dictyostelium discoideum. Here we demonstrate that its 57 residue C-terminal domain is necessary for intracellular retention of Dd-PDI and sufficient to localize a green fluorescent protein (GFP) chimera to the ER, especially to the nuclear envelope. Dd-PDI and GFP-PDI57 are recovered in similar cation-dependent complexes. The overexpression of GFP-PDI57 leads to disruption of endogenous PDI complexes and induces the secretion of PDI, whereas overexpression of a GFP-HDEL chimera induces the secretion of endogenous calreticulin, revealing the presence of two independent and saturable mechanisms. Finally, low-level expression of Dd-PDI but not of PDI truncated of its 57 C-terminal residues complements the otherwise lethal yeast TRG1/PDI1 null mutation, demonstrating functional disulfide isomerase activity and ER localization. Altogether, these results indicate that the PDI57 peptide contains ER localization determinants recognized by a conserved machinery present in D. discoideum and Saccharomyces cerevisiae.
- Published
- 2000
- Full Text
- View/download PDF
20. The protein disulphide-isomerase family: unravelling a string of folds.
- Author
-
Ferrari DM and Söling HD
- Subjects
- Carboxypeptidases metabolism, Cathepsin A, Models, Chemical, Molecular Chaperones metabolism, Oxidation-Reduction, Saccharomyces cerevisiae enzymology, Thioredoxins metabolism, Protein Disulfide-Isomerases metabolism, Protein Folding
- Abstract
The mammalian protein disulphide-isomerase (PDI) family encompasses several highly divergent proteins that are involved in the processing and maturation of secretory proteins in the endoplasmic reticulum. These proteins are characterized by the presence of one or more domains of roughly 95-110 amino acids related to the cytoplasmic protein thioredoxin. All but the PDI-D subfamily are composed entirely of repeats of such domains, with at least one domain containing and one domain lacking a redox-active -Cys-Xaa-Xaa-Cys- tetrapeptide. In addition to their known roles as redox catalysts and isomerases, the last few years have revealed additional functions of the PDI proteins, including peptide binding, cell adhesion and perhaps chaperone activities. Attention is now turning to the non-redox-active domains of the PDIs, which may play an important role in all of the known activities of these proteins. Thus the presence of both redox-active and -inactive domains within these proteins portends a complexity of functions differentially accommodated by the various family members.
- Published
- 1999
21. ERp28, a human endoplasmic-reticulum-lumenal protein, is a member of the protein disulfide isomerase family but lacks a CXXC thioredoxin-box motif.
- Author
-
Ferrari DM, Nguyen Van P, Kratzin HD, and Söling HD
- Subjects
- Adenosine Triphosphate metabolism, Amino Acid Sequence, Animals, Cattle, DNA, Complementary isolation & purification, Glycosylation, Humans, Molecular Sequence Data, Protein Disulfide-Isomerases genetics, Protein Folding, Recombinant Fusion Proteins biosynthesis, Tumor Cells, Cultured, Tunicamycin pharmacology, Endoplasmic Reticulum chemistry, Protein Disulfide-Isomerases chemistry, Thioredoxins chemistry
- Abstract
We report on the isolation, sequence and a putative role of a human endoplasmic-reticulum-lumenal protein, ERp28. The protein has the C-terminal retention signal KEEL and localizes to the endoplasmic reticulum (ER) as seen by subcellular fractionation and immunofluorescence studies. The protein has significant sequence similarity to members of the protein disulfide isomerase (PDI) family, although it lacks the thioredoxin box (CGHC) motif. We propose, on the basis of sequence analysis, a model of the domain structure of PDI, representing a significant extension of previously proposed models. Our results are in partial agreement with recently published NMR data [Kemmink, J., Darby, J., Dijkstra, K., Nilges, M. & Creighton, T. E. (1997) Curr. Biol. 7, 239-245] and indicate that PDI contains, in addition to the two thioredoxin folds described in previous models, two thioredoxin folds within the domains previously defined as b and b'. The thioredoxin domain of ERp28 shares a higher degree of similarity with the corresponding active and inactive domains of PDI than with other members of the PDI family, indicating that ERp28 developed from an ancient form of PDI or a PDI precursor. In contrast to Ig-heavy-chain-binding protein, human ERp28 is not induced by metabolic stress (tunicamycin). In in vitro experiments, ERp28 and calnexin precipitate with overexpressed, wild-type hepatitis B small surface antigen and with a mutated ER-retained form. This indicates that ERp28, as calnexin, may be involved in the processing of secretory proteins within the ER.
- Published
- 1998
- Full Text
- View/download PDF
22. Coupled saccharification and fermentation of pre-treated Eucalyptus wood: a simple kinetic model.
- Author
-
Albornoz C, Blanco S, Ferrari DM, and Ellenrieder G
- Abstract
Coupled saccharification and fermentation of Eucalyptus globulus wood, pre-treated by acid hydrolysis and sodium hypochlorite, was carried out in two column reactors: one for enzymatic hydrolysis of the substrate at 50°C and the other for fermentation of sugars with calcium alginate-immobilized Saccharomyces cerevisiae at 30°C. A buffered solution containing cellulases at pH 4.8 was recycled through both reactors. The maximum yields were about 0.26 g ethanol per g of substrate. The results were reproduced reasonably well using a simple kinetic model consisting of two successive pseudo-first-order reactions.
- Published
- 1993
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.