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To enrich spatio-temporal information on the distribution of alien, cryptogenic, and neonative species in the Mediterranean and the Black Sea, a collective effort by 173 marine scientists was made to provide unpublished records and make them open access to the scientific community. Through this effort, we collected and harmonized a dataset of 12, 649 records. It includes 247 taxa, of which 217 are Animalia, 25 Plantae and 5 Chromista, from 23 countries surrounding the Mediterranean and the Black Sea. Chordata was the most abundant taxonomic group, followed by Arthropoda, Mollusca, and Annelida. In terms of species records, Siganus luridus, Siganus rivulatus, Saurida lessepsianus, Pterois miles, Upeneus moluccensis, Charybdis (Archias) longicollis, and Caulerpa cylindracea were the most numerous. The temporal distribution of the records ranges from 1973 to 2022, with 44% of the records in 2020–2021. Lethrinus borbonicus is reported for the first time in the Mediterranean Sea, while Pomatoschistus quagga, Caulerpa cylindracea, Grateloupia turuturu, and Misophria pallida are first records for the Black Sea ; Kapraunia schneideri is recorded for the second time in the Mediterranean and for the first time in Israel ; Prionospio depauperata and Pseudonereis anomala are reported for the first time from the Sea of Marmara. Many first country records are also included, namely: Amathia verticillata (Montenegro), Ampithoe valida (Italy), Antithamnion amphigeneum (Greece), Clavelina oblonga (Tunisia and Slovenia), Dendostrea cf. folium (Syria), Epinephelus fasciatus (Tunisia), Ganonema farinosum (Montenegro), Macrorhynchia philippina (Tunisia), Marenzelleria neglecta (Romania), Paratapes textilis (Tunisia), and Botrylloides diegensis (Tunisia).

Funder: Ubbo Emmius fonds, Funder: Boehringer Ingelheim Fonds (BIF); Id: http://dx.doi.org/10.13039/501100001645, Funder: Cornelis de Cock, Funder: FP7 People Marie‐Curie Actions (PEOPLE), Funder: BCN Brain RUG, Funder: KU Leuven, Post‐doctoral Mandate PDM/20/150 and the Industrial Research Fund; Id: http://dx.doi.org/10.13039/501100004040, While aggregation‐prone proteins are known to accelerate aging and cause age‐related diseases, the cellular mechanisms that drive their cytotoxicity remain unresolved. The orthologous proteins MOAG‐4, SERF1A, and SERF2 have recently been identified as cellular modifiers of such proteotoxicity. Using a peptide array screening approach on human amyloidogenic proteins, we found that SERF2 interacted with protein segments enriched in negatively charged and hydrophobic, aromatic amino acids. The absence of such segments, or the neutralization of the positive charge in SERF2, prevented these interactions and abolished the amyloid‐promoting activity of SERF2. In protein aggregation models in the nematode worm Caenorhabditis elegans, protein aggregation and toxicity were suppressed by mutating the endogenous locus of MOAG‐4 to neutralize charge. Our data indicate that MOAG‐4 and SERF2 drive protein aggregation and toxicity by interactions with negatively charged segments in aggregation‐prone proteins. Such charge interactions might accelerate primary nucleation of amyloid by initiating structural changes and by decreasing colloidal stability. Our study points at charge interactions between cellular modifiers and amyloidogenic proteins as potential targets for interventions to reduce age‐related protein toxicity.

Simple Summary Batoid species are cartilaginous fish commonly known as rays, but they also include stingrays, electric rays, guitarfish, skates, and sawfish. These species are very sensitive to fishing, mainly because of their slow growth rate and late maturity; therefore, they need to be adequately managed. Regrettably, information on life history traits (e.g., length at first maturity, sex ratio, and growth) and abundance are still scarce, particularly in the Mediterranean Sea. In this regard, the present study focuses on the Strait of Sicily (Central Mediterranean) and aims to improve knowledge gained through scientific survey data. In particular, abundance data, spatial distribution, and some life history traits are herein presented. In the investigated area, the biomass trends of the batoids indicated a slight recovery even if few species showed a depletion. Considering the importance of this taxon for maintaining the marine ecosystem equilibrium, management measures are desirable. Abstract Batoid species play a key role in marine ecosystems but unfortunately they have globally declined over the last decades. Given the paucity of information, abundance data and the main life history traits for batoids, obtained through about three decades of bottom trawl surveys, are presented and discussed. The surveys were carried out in two areas of the Central Mediterranean (South of Sicily and Malta Island), in a timeframe ranging from 1990 to 2018. Excluding some batoids, the abundance trends were stable or increasing. Only R. clavata, R. miraletus, and D. oxyrinchus showed occurrence and abundance indexes notable enough to carry out more detailed analysis. In particular, spatial distribution analysis of these species highlighted the presence of two main hotspots in Sicilian waters whereas they seem more widespread in Malta. The lengths at first maturity (L50) were 695 and 860, 635 and 574, and 364 and 349 mm total length (TL), respectively, for females and males of D. oxyrinchus, R. clavata, and R. miraletus. The asymptotic lengths (L∞) and the curvature coefficients (K) were 1365 and 1240 (K = 0.11 and 0.26), 1260 and 1100 (K = 0.16 and 0.26), and 840 and 800 mm TL (K = 0.36 and 0.41), respectively, for females and males of D. oxyrinchus, R. clavata, and R. miraletus. The lack of detailed quantitative historical information on batoids of Sicily and Malta does not allow to analytically judge the current status of the stocks, although the higher abundance of some species within Malta raises some concern for the Sicilian counterpart. In conclusion, suitable actions to protect batoids in the investigated area are recommended.

Independence of science and best available science are fundamental pillars of the UN-FAO code of conduct for responsible fisheries and are also applied to the European Union (EU) Common Fishery Policy (CFP), with the overarching objective being the sustainable exploitation of the fisheries resources. CFP is developed by DG MARE, the department of the European Commission responsible for EU policy on maritime affairs and fisheries, which has the Scientific, Technical and Economic Committee for Fisheries (STECF) as consultant body. In the Mediterranean and Black Sea, the General Fisheries Commission for the Mediterranean (FAO-GFCM), with its own Scientific Advisory Committee on Fisheries (GFCM-SAC), plays a critical role in fisheries governance, having the authority to adopt binding recommendations for fisheries conservation and management. During the last years, advice on the status of the main stocks in the Mediterranean and Black Sea has been provided both by GFCM-SAC and EU-STECF, often without a clear coordination and a lack of shared rules and practices. This has led in the past to: i) duplications of the advice on the status of the stocks thus adding confusion in the management process and, ii) a continuous managers’ interference in the scientific process by DG MARE officials hindering its transparency and independence. Thus, it is imperative that this stalemate is rapidly resolved and that the free role of science in Mediterranean fisheries assessment and management is urgently restored to assure the sustainable exploitation of Mediterranean marine resources in the future., SI

Plastics in the oceans can break up into smaller size and shape resembling prey or particles selected for ingestion by marine organisms. Plastic polymers may contain chemical additives and contaminants, including known endocrine disruptors that may be harmful for the marine organisms, in turn posing potential risks to marine ecosystems, biodiversity and food availability. This study assesses the presence of plastics in the contents of the gastrointestinal tract (GIT) of a commercial fish species, the Atlantic horse mackerel, Trachurus trachurus, sampled from two different fishing areas of central Mediterranean Sea. Adverse effect of plastics occurrence on T. Trachurus health were also assessed quantifying the liver expression of vitellogenin (VTG), a biomarker for endocrine disruption. A total of 92 specimens were collected and morphometric indices were analysed. A subgroup was examined for microplastics (MP 1 mm) and macroplastics (MaP1 cm) accumulation in the GIT and for VTG expression. Results indicated that specimens from the two locations are different in size and maturity but the ingestion of plastic is widespread, with microplastics (fragments and filaments) abundantly present in nearly all samples while macroplastics were found in the larger specimens, collected in one of the two locations. Spectroscopic analysis revealed that the most abundant polymers in MP fragments were polystyrene, polyethylene and polypropylene, whereas MP filaments were identified mainly as nylon 6, acrylic and polyester. MaP were composed mainly of weathered polyethylene or polypropylene. The expression of VTG was observed in the liver of 60% of all male specimens from both locations. The results of this study represent a first evidence that the ingestion of plastic pollution may alter endocrine system function in adult fish T. Trachurus and warrants further research.

The effect of artificial lights mounted on the headrope trawl net on the catch of deep water rose shrimp (Parapenaeus longirostris), European hake (Merluccius merluccius), and Atlantic horse mackerel (Trachurus trachurus) was tested in a survey carried out on-board a commercial trawler off the SW Sicilian coast. A total of 18 repeated nocturnal hauls, alternating without (control) and with (test) LED lights (10 green and 10 white) according to the fishers’ setup, were conducted. Overall, the test net catch rates were not significantly higher than those of the control net (Kruskal-Wallis test, p > 0.05), except for P. longirostris (p < 0.05). Conversely, the two-tailed Kolmogorov–Smirnov test revealed statistical differences in the size structure of P. longirostris, M. merluccius, and T. trachurus between the test and control nets (p < 0.05). Using generalised linear mixed models, the test net was found to yield higher catches of undersized individuals of the three species and adults of P. longirostris than the control net. Our study results are discussed in the context of the exploitation and management of Mediterranean trawl fisheries.

While aggregation-prone proteins are known to accelerate ageing and cause age-related diseases, the cellular mechanisms that drive their cytotoxicity remain unresolved. The orthologous proteins MOAG-4, SERF1A and SERF2 have recently been identified as cellular modifiers of such cytotoxicity. Using a peptide array screening approach on human amyloidogenic proteins, we found that SERF2 interacted with specific patterns of negatively charged and hydrophobic, aromatic amino acids. The absence of such patterns, or the neutralization of the positive charge in SERF2, prevented these interactions and abolished the amyloid-promoting activity of SERF2. In a protein aggregation model in the nematodeC. elegans, protein aggregation was suppressed by mutating the endogenous locus of MOAG-4 to neutralize charge. Our data indicate that charge interactions are required for MOAG-4 and SERF2 to promote aggregation. Such charged interactions might accelerate the primary nucleation of amyloid by initiating structural changes and by decreasing colloidal stability. Our finding that negatively charged segments are overrepresented in amyloid-forming proteins suggests that inhibition of charge interactions deserves exploration as a strategy to target age-related protein toxicity.Significance StatementHow aging causes relatively common diseases such as Alzheimer’s and Parkinson’s is still a mystery. Since toxic structural changes in proteins are likely to be responsible, we investigated biological mechanisms that could drive such changes. We made use of a modifying factor called SERF2, which accelerates structural changes and aggregation of several disease-related proteins. Through a peptide-binding screen, we found that SERF2 acts on negatively charged protein regions. The abundance of such regions in the disease-related proteins explains why SERF has its effect. Removing positive charge in SERF was sufficient to suppress protein aggregation in models for disease. We propose that blocking charge-interactions with SERF or other modifiers could serve as a general approach to treat age-related protein toxicity.

Abundance, composition, and distribution of macro-litter found on the seafloor of the Strait of Sicily between 10 and 800 m depth has been studied using data collected by bottom trawl surveys MEDITS from 2015 to 2019. Three waste categories based on the items use were considered: single-use, fishing-related and generic-use. Over 600 sampling sites, just 14% of these were litter-free. The five-years average density of seafloor litter was 79.6 items/km2 and ranged between 46.8 in 2019 and 118.1 items/km2 in 2015. The predominant waste type was plastic (58% of all items). Regardless of material type, single-use items were a dominant (60% of items) and widespread (79% of hauls) fraction of litter with a mean density of 48.4 items/km2. Fishing-related items accounted for 12% of total litter items. Percentage of dirty hauls and litter density increased with depth. Analysis of the relation density-depth indicates a progressive increase of litter density beyond depth values situated within the interval 234–477 m depending on the litter category. A significant decrease in litter density by categories was observed over the period. Patterns of spatial distribution at the higher depths (200–80 0m) resulted stable over the years. Density hotspots of fishing-related items were found where the fishing activity that uses fish aggregating devices (FADs) is practised and in the proximity of rocky banks. Single-use and generic-use objects densities were greater on the seafloor along main maritime routes than other areas. Comparisons between the percentage of hauls littered with anthropic waste from the mid-1990s against those in 2018–19 highlighted an increase of about 10.8% and 15.3% for single-use items and fishing-related items respectively, and a decrease of 18.6% for generic-use items. This study provides a snapshot of the current situation of littering in the central Mediterranean Sea and represents a solid baseline against which the effectiveness of current and future mitigation strategies of the litter impact on marine environment can be measured.

Il documento "La scienza della pesca a tavola: ovvero perché il commissario Salvo Montalbano non troverà mai l’insalata verde di Posidonia nel menù della trattoria di Punta Secca"è stato presentato presso il Civic Center di Mazara del Vallo (TP,)il 6 dicembre 2019 in occasione dell’evento "Isola del Gusto". Questo lavoro nasce dall'idea degli autori di illustrareuna serie diesempi di relazione fra scienza e prodotti del mare, procedendo dalle forme di vita più semplici a quelle più complesse. &nbsp

One hundred and six specimens of the Por’s goatfish, Upeneus pori Ben-Tuvia & Golani (1989), a Lessepsian species native to the Western Indian Ocean, were collected from bottom trawlers’ catches from 2012 to 2016 on the deep shelf off the southern coast of Lampedusa Island (Strait of Sicily, Central Mediterranean Sea). Since it first appeared in Iskenderun Bay (Turkey) in 1950, the Por’s goatfish has quickly spread in Levantine Sea waters to become a commercial species used by local fisheries, while continuing its range expansion along the south-eastern coasts of the Mediterranean. Because the Strait of Sicily currently represents the westernmost sector of this species distribution area, it might serve as a stepping-stone for this species’ expansion in the western basin of the Mediterranean. Supporting this hypothesis was our finding of specimens with post-spawning gonads. The pattern of westward expansion by the Por’s goatfish in the Mediterranean Sea and its settlement in the Strait of Sicily are discussed in relation to the warming trend over the last 30years.

The bony fish Lophotus lacepede (Giorna, 1809) and Zu cristatus (Bonelli, 1819) are the two species rarely recorded within the Mediterranean basin, usually reported as accidentally captured in depth (mesopelagic) fishing operations. In the current work, we present the first record of L. lacepede and Z. cristatus in fishing catches from southwestern Tyrrhenian Sea. Moreover, in order to improve existent biological/ ecological knowledge, some bio-related aspects such as feeding aspect, sexual maturity and age estimate have been discussed.

The detection of microplastics in the gastrointestinal tracts (GIT) of marine organisms has been recognized as among a major detrimental consequence of global plastic pollution. The effect of bioaccumulation may be potentially dangerous for food web transfer and consequently for human health. Several observational studies have been carried out in a wide range of marine organisms, including decapod crustaceans, such as the shore crab and Norway lobster; however, no specific study has been assessed on the deep-water rose shrimp (Parapenaeus longistroris Lucas, 1846), an ecologically and commercially important Mediterranean crustacean. Based on this, we performed a preliminary study on the presence of microplastics in the GIT of 24 deep-water rose shrimp (DWRS) specimens, collected in the Strait of Sicily, which is among the most important fishing ground of the Mediterranean Sea. After the screening, 21% of DWRS GIT contained microplastics size range of 100 to 300 µm. Specifically, 20% of them were spherical fragments, 40% were fibres and another 40% were tangled masses of filaments. In all specimens, alien black particles (BPs) (mean diameter about 50 µm) were detected. Because the microscopical examination appeared not explanatory, different hypotheses could be formulated. We assume that these particles could be of either volcanoclastic particles (olivine – basalt phenocrysts or aggregates) related to historical/recent submarine volcanic activity that prevails in this fishing ground and or black carbon soot that had likely originated from the biomass burning and anthropogenic combustion sources, another harmful effect of the intense commercial and fishing traffic, characterising the central Mediterranean Sea.

Five specimens of the invasive American blue crab Callinectes sapidus were caught from October 2018 to December 2019 off the Mazara del Vallo harbour, Strait of Sicily. This note documents further records of the species in the Strait of Sicily and its settlement in the area. In addition, an update of the spatial distribution of C. sapidus in the Mediterranean Sea was provided.

An additional record of the non-indigenous species (NIS) Seriola fasciata from the southern coast of Sicily (Central Mediterranean Sea) is here described in this note. The catch record is the first in the area and confirms the key role of the area for NIS spreading. In addition, an updated map of its spatial distribution is provided as well as a discussion on the possible misidentification and competition with the native greater amberjack Seriola dumerili., U ovoj je bilješci opisan dodatni nalaz o vrsti Seriola fasciata s južne obale Sicilije (Sredozemno more). Ovaj nalaz je prvi na tom području i potvrđuje ključnu ulogu područja za širenje stranih vrsta (NIS). Osim toga, prikazana je ažurirana karta prostorne raspodjele vrste Seriola fasciata, kao i rasprava o mogućoj pogrešnoj identifikaciji i kompeticiji s vrstom Seriola dumerili.

The high variability of trammel fisheries, due to a marked seasonality in target species and fishing activities needs to be investigated with high spatial and temporal resolution. The present study focuses on trammel net fishery in southwestern Sicily (central Mediterranean Sea) identifying and characterizing the main metiers in relation to some key aspects of the fishery such as the target species, composition of landings, main fishing grounds and time of the year. For this purpose, a multivariate statistical approach based on landings and effort data of the Mazara del Vallo southwestern Sicily, Italy) trammel fleet in the period 2009–2013 was applied. A total of 153 different landed species and four different trammel net metiers were identified. These metiers showed differences in target species (i.e. Sepia officinalis, Palinurus elephas, Mullus surmuletus and a mix of species), fishing season, fishing grounds and dimension of fishing vessels. The metiers identified were significantly different in terms of total average landing per unit of effort (LPUE) with metier 1 targeting M. surmuletus, showing the highest average LPUE (2047 (192 s.e.) g*(h)−1*103 m net) and metier 2 targeting S. officinalis, exhibiting the lowest value (1175 (119 s.e.) g*(h)−1*103 m net). The study provides new knowledge on the dynamics of trammel fisheries in southwestern Sicily also showing that the complex nature of this peculiar fishery should be taken into account in any future sampling program aimed at the monitoring and management of artisanal fisheries in this area and more in general in the Mediterranean Sea.

espanolEl cangrejo calapido Calappa tuerkayana (Pastore, 1995) y la galera Parasquilla ferussaci (Roux, 1828) son dos especies de crustaceos escasamente reportadas en el mar Mediterraneo. En noviembre de 2018 se recolectaron dos ejemplares de C. tuerkayana y un ejemplar de P. ferussaci (Roux, 1828) en un estudio realizado mediante pesca de arrastre en aguas de Mazara del Vallo (canal de Sicilia), sobre un fondo blando a una profundidad aproximada de 132 y 145 m, respectivamente. Este trabajo refiere el registro mas septentrional de C. tuerkayana en el canal de Sicilia y confirma la presencia de P. ferussaci en esta misma area. Presenta asimismo una actualizacion de la distribucion de estas especies de crustaceos en el mar Mediterraneo. catalaEl cranc calapid Calappa tuerkayana (Pastore, 1995) i la galera Parasquilla ferussaci (Roux, 1828) son dues especies de crustacis escassament reportades al mar Mediterrani. El mes de novembre de 2018 es van recol·lectar dos exemplars de C. tuerkayana i un exemplar de P. ferussaci (Roux, 1828) en un estudi fet mitjancant pesca d’arrossegament en aigues de Mazara del Vallo (canal de Sicilia), sobre un fons tou a una profunditat aproximada de 132 i 145 m, respectivament. Aquest treball refereix el registre mes septentrional de C. tuerkayana al canal de Sicilia i confirma la presencia de P. ferussaci en aquesta mateixa area. Tambe presenta una actualitzacio de la distribucio d’aquestes especies de crustacis al mar Mediterrani. EnglishThe shamefaced crab Calappa tuerkayana Pastore, 1995 and the mantis shrimp Parasquilla ferussaci (Roux, 1828) are two crustacean species rarely reported in the Mediterranean Sea. In December 2018, two specimens of C. tuerkayana and one specimen of P. ferussaci were collected on a soft bottom at about 132 and 145 m depth during a trawl survey off Mazara del Vallo harbour (Strait of Sicily). This note reports the northernmost record of C. tuerkayana in the Strait of Sicily and confirms the occurrence of P. ferussaci in the same area. An update of the spatial distribution of these crustacean species in the Mediterranean Sea is also presented.

The mechanisms by which protein complexes convert from functional into pathogenic are the subject of intensive research. Here, we report how functionally unfavourable protein interactions can be induced by structural fuzziness, i.e. by persisting conformational disorder in protein complexes. We show that extreme disorder in the bound state transforms the intrinsically disordered protein SERF1a from an RNA-organizing factor into a pathogenic enhancer of alpha-synuclein (aSyn) amyloid toxicity. We demonstrate that SERF1a promotes the incorporation of RNA into nucleoli and liquid-like artificial RNA-organelles by retaining an unusually high degree of conformational disorder in the RNA-bound state. However, this type of structural fuzziness also determines an undifferentiated interaction with aSyn. RNA and aSyn both bind to one identical, positively charged site of SERF1a by an analogous electrostatic binding mode, with similar binding affinities, and without any observable disorder-to-order transition. The absence of primary or secondary structure discriminants results in SERF1a being unable to select between nucleic acid and amyloidogenic protein, leading the pro-amyloid aSyn:SERF1a interaction to prevail in the cytosol under conditions of cellular stress. We suggest that fuzzy disorder in SERF1a complexes accounts for an adverse gain-of-interaction which favours toxic binding to aSyn at the expense of non-toxic RNA binding, thereby leading to a functionally distorted and pathogenic process. Thus, structural fuzziness constitutes a direct link between extreme conformational flexibility, amyloid aggregation and the malfunctioning of RNA-associated cellular processes, three signatures of neurodegenerative proteinopathies.

This study presents data of two adult female tope sharks, Galeorhinus galeus (Linnaeus 1758) that were tagged in the northeast Atlantic and recaptured in the central Mediterranean Sea. The sharks were tagged in Scotland in 2009 and Ireland in 2015 and were recaptured off the south coast of Sicily in 2014 and 2017, respectively. The specimen captured in Scotland was a female with an initial total body length of 175 cm, which grew 37 cm and gained about 10 kg on recapture (5.4 years later, or 1967 days). The specimen captured in Ireland was a pregnant female that grew 14 cm between captures (spanning 248 days), with an estimated age of 15-17 years. The growth rate of the two specimens was 6.8 and 7.8 cm year, respectively. This growth rate was faster than the annual increments previously suggested for adults of this species. Previous tope shark recapture records in the Mediterranean Sea were limited to the Alboran Sea, coast of Valencia, and the coast of Algeria. Thus, the records for the two females in the current study provided the first evidence of long distance entrance of the north-east Atlantic tope shark in the Mediterranean Sea. Genetic data are required to establish the connectivity of the population across the north-east Atlantic and Mediterranean, along with the identification of factors driving the migration of females from the north-east Atlantic to lower latitudes.

Four specimens of the northern brown shrimp Penaeus aztecus Ives, 1891, a West Atlantic species, were unexpectedly caught by bottom trawlers along the South coast of Sicily between Porto Empedocle and Mazara del Vallo (Central Mediterranean). The dispersal and transport of shrimp eggs and larvae via surface water circulation is suggested as the likely cause of its rapid westward spread since its first appearance in the Gulf of Antalya (Turkey) in 2009. The settlement of P. aztecus in Mediterranean coastal habitats may result in competition with the native caramote prawn Penaeus kerathurus (Forskål, 1775). Some aspects of the species geographical distribution in Mediterranean are briefly discussed in relation to the circulation pattern of surface waters.

This short note describes the first record of the Norwegian skate, Dipturus nidarosiensis (Storm, 1881), in the Strait of Sicily. A male specimen of 95.6 cm total length and 3466 g weight was caught on December 2017 during a bottom trawl survey at a mean depth of 551 m. Information on biometric, sexual maturity, stomach content, and age estimation were provided. This finding confirms the occurrence of the species in the Strait of Sicily, previously suggested by the record of an empty egg case in 2015, thus contributing to the knowledge on the distribution of the species in the Mediterranean Sea.

An unusual catch of mature specimens of Pagellus acarne (Risso, 1827) off the south coast of Sicily (Quadro Bank, central Mediterranean Sea) on October 2016 allowed to improve the ongoing knowledge on the age structure of spawners and other reproductive aspects of the species. A sample of 104 (32 female and 72 male) specimens was examined. Females showed size (range TL 1 = 20.5 to 25.5 cm; mean length = 22.3 ± 1.2 cm) longer than males (range TL = 16.5 – 23.5 cm; mean length = 20.0 ± 1.8 cm). About 94% of females and 88% of males were mature. The pooled sex LWR 2 was W 3 (g) = 0.003 TL 3.5207 . The age structure estimated by sagittae readings ranged from age class III to VII in females and II to VI in males with a prevalence of age class VI and IV for females and males, respectively. The precision of age estimates was tested by applying both the APE 4 and the mean CV 5 . Our record suggests that the Quadro Bank is an EFH 6 for P. acarne. Knowing when and where adults aggregate for reproduction, is a prerequisite to develop effective management measures to preserve the replacement capability of exploited stocks and pursue sustainable fisheries strategies.

The recent discovery of biologically active fully disordered, so called random fuzzy protein-protein interactions leads to the question of how the high flexibility of these protein complexes correlates to aggregation and pathologic misfolding. We identify the structural mechanism by which a random fuzzy protein complex composed of the intrinsically disordered proteins alpha-Synuclein and SERF1a is able to potentiate cytotoxic aggregation. A structural model derived from an integrated NMR/SAXS analysis of the reconstituted aSyn:SERF1a complex enabled us to observe the partial deprotection of one precise aSyn amyloid nucleation element in the fully unstructured ensemble. This minimal exposure was sufficient to increase the amyloidogenic tendency of SERF1a-bound aSyn. Our findings provide a structural explanation of the previously observed pro-amyloid activity of SERF1a. They further demonstrate that random fuzziness can trigger a structurally organized disease-associated reaction such as amyloid polymerization.

Vacuolar ATPases are multisubunit protein complexes that are indispensable for acidification and pH homeostasis in a variety of physiological processes in all eukaryotic cells. An arginine residue (Arg(735)) in transmembrane helix 7 (TM7) of subunit a of the yeast ATPase is known to be essential for proton translocation. However, the specific mechanism of its involvement in proton transport remains to be determined. Arginine residues are usually assumed to “snorkel” toward the protein surface when exposed to a hydrophobic environment. Here, using solution NMR spectroscopy, molecular dynamics simulations, and in vivo yeast assays, we obtained evidence for the formation of a transient, membrane-embedded cation–π interaction in TM7 between Arg(735) and two highly conserved nearby aromatic residues, Tyr(733) and Trp(737). We propose a mechanism by which the transient, membrane-embedded cation–π complex provides the necessary energy to keep the charged side chain of Arg(735) within the hydrophobic membrane. Such cation–π interactions may define a general mechanism to retain charged amino acids in a hydrophobic membrane environment.

Among researchers worldwide, the combination of preservation methods aimed to achieve improved effects on microbial inactivation of seafood products is an area of research receiving increasing interest. Globally also, the demand for high quality minimally processed food products are on the increase. Ozone treatment, three decade – long declared ‘Generally Recognized As Safe’ and approved as food contact sanitizing agent has evolved up to recent times where it assumes the likes of domestic food-processing facilities manufactured with environment-friendly status ensuring consumer safety. On the other hand, the subject of inactivation kinetics of seafood microorganisms following ozone treatment is still under debate. Furthermore, kinetic models remain the economical and quick approach to predict the preservation parameters. Nevertheless, there is paucity of information regards aerobic microbial inactivation of crustacean product arising from fixed minimal ozone discharge. Is the phenomenon of aerobic microbial inactivation kinetics of shrimp product subject to a fixed minimal ozone discharge during iced storage a fact or fib? To answer this, the aerobic microbial inactivation kinetics of shrimp during iced storage of up to 11 days was inspected. The process conditions comprised of a fixed ozone concentration of 100mg/h minimally discharged at wash time of 1min as well as iced storage of up to 11 days. Minimal ozone treatment was applied either prior to or during iced storage situations. Aerobic microbial inactivation presented significant effects during iced storage (P

Aberrant protein aggregation underlies a variety of age-related neurodegenerative disorders, including Alzheimer's and Parkinson's diseases. Little is known, however, about the molecular mechanisms that modulate the aggregation process in the cellular environment. Recently, MOAG-4/SERF has been identified as a class of evolutionarily conserved proteins that positively regulates aggregate formation. Here, by using nuclear magnetic resonance (NMR) spectroscopy, we examine the mechanism of action of MOAG-4 by characterizing its interaction with α-synuclein (α-Syn). NMR chemical shift perturbations demonstrate that a positively charged segment of MOAG-4 forms a transiently populated α-helix that interacts with the negatively charged C terminus of α-Syn. This process interferes with the intramolecular interactions between the N- and C-terminal regions of α-Syn, resulting in the protein populating less compact forms and aggregating more readily. These results provide a compelling example of the complex competition between molecular and cellular factors that protect against protein aggregation and those that promote it.

The interaction with biological membranes is of functional importance for many peptides and proteins. Structural studies on such membrane-bound biomacromolecules are often carried out in solutions containing small membrane-mimetic assemblies of detergent molecules. To investigate the influence of the hydrophobic chain length on the structure, diffusional and dynamical behavior of a peptide bound to micelles, we studied the binding of three peptides to n-phosphocholines with n ranging from 8 to 16. The peptides studied are the 15 residue antimicrobial peptide CM15, the 25-residue transmembrane helix 7 of yeast V-ATPase (TM7), and the 35-residue bacterial toxin LdrD. To keep the dimension of the peptide-membrane-mimetic assembly small, micelles are typically used when studying membrane-bound peptides and proteins, for example, by solution NMR spectroscopy. Since they are readily available in deuterated form most often sodium-dodecylsulfate (SDS) and dodecylphosphocholine (DPC) are used as the micelle-forming detergent. Using NMR, CD, and SAXS, we found that all phosphocholines studied form spherical micelles in the presence and absence of small bound peptides and the diameters of the micelles are basically unchanged upon peptide binding. The size of the peptide relative to the micelle determines to what extent the secondary structure can form. For small peptides (up to approximately 25 residues) the use of shorter chain phosphocholines is recommended for solution NMR studies due to the favorable spectral quality and since they are as well-structured as in DPC. In contrast, larger peptides are better structured in micelles formed by detergents with chain lengths longer than DPC.

Intra- and extra-cellular amyloid protein fibers are traditionally coupled to a series of devastating and incurable neurodegenerative disorders. Since the discovery of physiologically useful amyloids, our attention has been shifting from pure pathology to function, as amyloid aggregation seems to constitute a basis for the functional and dynamic assembly of biological structures. The following article summarizes how the cell profits from such an unconventional high-risk aggregation at the rim of physiologic utility and pathologic catastrophe.

The cloning, purification, and biophysical characterization of the first eukaryotic cold shock protein homologue, Cla h 8, expressed as single functional polypeptide is reported here. It was discovered as a minor allergen of the mold Cladosporium herbarum by phage display using a library selectively enriched for IgE-binding proteins. Based on the sequence homology of Cla h 8 with bacterial cold shock proteins (CSPs), a homology-based computer model of the allergen was computed indicating an all-beta structure of Cla h 8. This major structural feature was confirmed by CD spectroscopy. Despite the structural similarities with bacterial CSPs, the DNA-binding and unfolding behavior of Cla h 8 exhibited unique and previously undescribed characteristics. High affinities of Cla h 8 for single-stranded DNA as well as for double-stranded DNA corresponding to the human Y-box were detected. The affinity for double-stranded DNA increased significantly with decreasing temperature, which was paralleled by an increase in the beta sheet content of the protein. Temperature-dependent fluorescence anisotropy and far-UV CD measurements revealed different unfolding transitions at 28 and at 35.7 degrees C, respectively, indicating a multistate transition, which is uncommon for CSPs. The enhanced affinity for DNA at low temperatures together with the low unfolding transition refer to the functional significance of Cla h 8 at reduced temperatures.

Many neurodegenerative disorders are linked to irreversible protein aggregation, a process that usually comes along with toxicity and serious cellular damage. However, it is emerging that protein aggregation can also serve for physiological purposes, as impressively shown for prions. While the aggregation of this protein family was initially considered exclusively toxic in mammalians organisms, it is now almost clear that many other proteins adopt prion-like attributes to rationally polymerize into higher order complexes with organized physiologic roles. This implies that cells can tolerate at least in some measure the accumulation of inherently dangerous protein aggregates for functional profit. This review summarizes currently known strategies that living organisms adopt to preserve beneficial aggregation, and to prevent the catastrophic accumulation of toxic aggregates that frequently accompany neurodegeneration.