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Increased human activity in the Antarctic Peninsula combined with accelerated melting of its glaciers highlights the importance of monitoring trace element concentrations. Surface sediment samples were collected around King George Island, Hope Bay and in the Bransfield Strait in February 2020 and were analysed by X-ray fluorescence spectroscopy and inductively coupled plasma mass spectrometry. The methods display a good correlation. Our results show clear distinctions between these regions for selected elements with high local heterogeneities. Hope Bay exhibited lower concentrations of Fe, Mn, Co, V, Zn while most stations in the Bransfield Strait and around King George Island showed moderate to significant enrichment in Cu, As and Cd. Twelve stations presented a moderate ecological risk. The consistency of our values supports a natural rather than anthropogenic origin, possibly related to volcanism and the geology of the area. However, our results suggest an increase in Cr that should be further investigated.

Context. Previous research has shown the presence of an endangered humpback whale population breeding off the Pacific coast of Central America. However, little is known about the density, size, social-group structure and spatial habitat use of this subpopulation. Aim. The study goal was to characterise a potential breeding subpopulation of humpback whales in the waters off Nicaragua. Five objectives were used to achieve this goal: (1) estimate abundance, (2) determine encounter rates, (3) define group composition, (4) assess distribution, and (5) document habitat-use patterns. Method. Boat-based surveys were conducted between November and April at two study sites along the Pacific coast of Nicaragua in the winters of 2004–2008 and 2016–2020. Key result. Inter-annual mark–recapture estimates did not yield a reliable estimate of abundance. Encounter rates were lower for the northern study site than for the southern site. Group composition consisted of groups with calves, singers and competitive males. Conclusion. These results confirmed that Nicaragua is a breeding area based on known breeding-ground behaviours observed in other areas, and similar environmental characteristics. Implication. Distinct habitats were found at the two study sites, suggesting that Central American humpback whales might use different areas within the broader Central American breeding range according to their needs and activity.

An integrative approach is crucial in discrimination of species, especially for taxa that are difficult to identify based on morphological characters. In this study, we combine genetics and morphology to assess the diversity of Pterasteridae, a sea star family diversified in deep-sea and polar environments. Because of their derived anatomy and the frequent loss of characters during preservation, Pterasteridae are a suitable case for an integrative study. The molecular identification of 191 specimens (mostly from the Southern Ocean) suggests 26–33 species in three genera (Diplopteraster, Hymenaster and Pteraster), which match the morphological identification in 54–62% of cases. The mismatches are either different molecular units that are morphologically indistinguishable (e.g. Pteraster stellifer units 2 and 4) or, conversely, nominal species that are genetically identical (e.g. Hymenaster coccinatus/densus/praecoquis). Several species are shared between the Northern and Southern Hemispheres (e.g. Pteraster jordani/affinis). In conclusion, the taxonomic status of some groups is confirmed, but for others we find the need to re-evaluate the taxonomy at both genus and species levels. This work significantly increases the DNA barcode library of the Southern Ocean species and merges taxonomic information into an identification key that could become a baseline for future studies (pterasteridae-so.identificationkey.org)., info:eu-repo/semantics/published

We present detailed microscopic simulations of high-energy cosmic-ray air showers penetrating high-altitude ice layers that can be found at the polar regions. We use a combination of the CORSIKA Monte Carlo code and the Geant4 simulation toolkit, and focus on the particle cascade that develops in the ice to describe its most prominent features. We discuss the impact of the ice layer on the total number of particles in function of depth of the air shower, and we give a general parameterization of the charge distribution in the cascade front in function of Xmax of the cosmic ray air shower, which can be used for analytical and semi-analytical calculations of the expected Askaryan radio emission of the in-ice particle cascade. We show that the core of the cosmic ray air shower dominates during the propagation in ice, therefore creating an in-ice particle cascade strongly resembling a neutrino-induced particle cascade. Finally, we present the results of microscopic simulations of the Askaryan radio emission of the in-ice particle cascade, showing that the emission is dominated by the shower core, and discuss the feasibility of detecting the plasma created by the particle cascade in the ice using RADAR echo techniques., Comment: 14 pages, 18 figures

Ecological and social processes of the Spermonde Archipelago, South Sulawesi, Indonesia, have been intensively studied during the Science for the Protection of Indonesian Coastal Ecosystems (SPICE) program. The archipelago is of specific interest to better understand how intensive exploitation of marine resources results in the degradation of reef systems. The projects specifically targeted (1) ecological processes in coral reefs, (2) genetic structure of populations, and (3) socialeecological dynamics relating to resource use, social networks, and governance structures. A modeling compo- nent emphasized (4) the integration of different ecological, social, and environmental components. Results indicated that reef resources in the Spermonde Archipelago are intensively exploited and further stressed by pollution effluents from hinterland processes. The lack of alternative livelihoods perpetuates dependencies within the patroneclient system of the artisanal fisheries and supports high exploitation and also destructive resource uses. Greater inclusion of local stakeholders in the governance may result in better conservation practices, sustainable resource use, and improved livelihoods for the people.

16 pages, 5 figures, 5 tables, supplementary information https://doi.org/10.1007/s00438-021-01845-3.-- Availability of data and material: DNA sequences: GenBank accession numbers are provided in Table 1. All data are available in the manuscript or in the Supplementary information file, Interspecific introgression can occur between species that evolve rapidly within an adaptive radiation. Pachyptila petrels differ in bill size and are characterised by incomplete reproductive isolation, leading to interspecific gene flow. Salvin’s prion (Pachyptila salvini), whose bill width is intermediate between broad-billed (P. vittata) and Antarctic (P. desolata) prions, evolved through homoploid hybrid speciation. MacGillivray’s prion (P. macgillivrayi), known from a single population on St Paul (Indian Ocean), has a bill width intermediate between salvini and vittata and could also be the product of interspecies introgression or hybrid speciation. Recently, another prion population phenotypically similar to macgillivrayi was discovered on Gough (Atlantic Ocean), where it breeds 3 months later than vittata. The similarity in bill width between the medium-billed birds on Gough and macgillivrayi suggest that they could be closely related. In this study, we used genetic and morphological data to infer the phylogenetic position and evolutionary history of P. macgillivrayi and the Gough medium-billed prion relative other Pachyptila taxa, to determine whether species with medium bill widths evolved through common ancestry or convergence. We found that Gough medium-billed prions belong to the same evolutionary lineage as macgillivrayi, representing a new population of MacGillivray’s prion that originated through a colonisation event from St Paul. We show that macgillivrayi’s medium bill width evolved through divergence (genetic drift) and independently from that of salvini, which evolved through hybridisation (gene flow). This represents the independent convergence towards a similarly medium-billed phenotype. The newly discovered MacGillivray’s prion population on Gough is of utmost conservation relevance, as the relict macgillivrayi population in the Indian Ocean is very small, Open Access funding enabled and organized by Projekt DEAL. PQ, JFM, TLC and LC were supported by the Deutsche Forschungsgemeinschaft (Germany), Heisenberg program (grant number DFG, Qu 148-5 to P.Q.). Logistical and financial support was obtained from the South African Department of Environmental Affairs, through the South African National Antarctic Programme. LDS was supported by a Rutherford Discovery Fellowship from the Royal Society of New Zealand, With the institutional support of the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S)

Despite the increasing accessibility of high-throughput sequencing, obtaining high-quality genomic data on non-model organisms without proximate well-assembled and annotated genomes remains challenging. Here we describe a workflow that takes advantage of distant genomic resources and ingroup transcriptomes to select and jointly enrich long open reading frames (ORFs) and ultraconserved elements (UCEs) from genomic samples for integrative studies of microevolutionary and macroevolutionary dynamics. This workflow is applied to samples of the African unionid bivalve tribe Coelaturini (Parreysiinae) at basin and continent-wide scales. Our results indicate that ORFs are efficiently captured without prior identification of intron-exon boundaries. The enrichment of UCEs was less successful, but nevertheless produced a substantial dataset. Exploratory continent-wide phylogenetic analyses with ORF supercontigs (>515,000 parsimony informative sites) resulted in a fully resolved phylogeny, the backbone of which was also retrieved with UCEs (>11,000 informative sites), although some branches lack support in the latter case. Variant calling on the exome of Coelaturini from the Malawi Basin produced ~2,000 SNPs per population pair. Nucleotide diversity and population differentiation was low compared to previous estimates in mollusks, but comparable to those in recently diversifying Malawi cichlids and other taxa at an early stage of speciation. Skimming non-specific sequence data obtained for Coelaturini of the Malawi Basin, we reconstructed the maternally-inherited mitogenome, which displays an identical gene order to that of the most recent common ancestor of Unionidae. Overall, our workflow and results provide exciting perspectives for the development of integrative genomic studies on micro- and macroevolutionary dynamics in non-model organisms.

Coral reefs are important ecosystems in terms of their biodiversity and ecosystem functions. Particularly at local scales, coral reefs are vulnerable to natural and anthropogenic disturbances, leading to the degradation of reef health. Here, we employed two different methods to monitor reef health. First, we conducted line transect surveys to record the benthic community structure to infer ecological reef health. Secondly, trace metal concentrations in sediment samples and a bioindicator sponge species, Haliclona fascigera, were compared among sites to detect cryptic degradation and unknown sources of pollution. The study area comprised six reefs situated along the coast of Zanzibar’s main agglomeration, Stone Town, and subject to different types of disturbances and conservation management schemes. Overall, coral reef health was found to decrease with increasing proximity to Stone Town, with living hard coral cover being particularly low on reefs closest to Stone Town, which coincided with greater fishing, tourism, and pollution pressures. Reef assessments based on trace metal analyses differed from the community structure surveys. All sites showed high levels of arsenic and cadmium contamination, with some samples revealing concerning levels of chromium, copper and zinc. The reefs differed significantly between each other in terms of trace metal concentration for both sediments (p = 0.031, PERMANOVA) and sponge samples (p = 0.001, PERMANOVA). Trace metal concentrations were not correlated with distance to Stone Town, highlighting the downstream effects of industrial and urban sewage on even remote reefs. Coral reef health assessment was found to be dependent on the survey method employed, which is why we recommend the combination of complementary methods.

Littoraria snails are an important component of the food chain in the mangrove ecosystem. This study intends to examine the influence of the Western Indian Ocean currents and isolation-by-distance (IBD) on the genetic diversity and structure of Littoraria subvittata and Littoraria pallescens, which are the most dominant species of Littoraria along the East African coast. A fragment of the mitochondrial COI gene from 334 individuals of L. subvittata and 134 of L. pallescens collected from mangroves sites in Kenya, Tanzania, Mozambique and Madagascar, was used in the analysis. Low values of nucleotide diversity ( L. subvittata: 0.13 ± 0.10%, L. pallescens : 0.12 ± 0.00%) and high to moderate haplotype diversity ( L. subvittata: 0.57 ± 0.03, L. pallescens: 0.55 ± 0.05) were recorded for both species. An analysis of molecular variances (AMOVA) detected a significant genetic difference among populations of L. subvittata (Φst: 0.093, P .05). The spatial analysis of molecular variance (SAMOVA) did not detect population clusters in L. subvittata. In contrast, SAMOVA revealed slight but significant genetic structuring between two groups of populations in L. pallescens. These results may indicate that L. subvittata is sensitive to impacts of population geographic IBD compared to L. pallescens. The differences in genetic structure of populations between the two species may be linked to their larval potential differences in crossing the oceanic barriers such as currents and eddies during dispersal.

The impact of salt farming on the habitats and food sources of Austruca occidentalis and Littoraria subvittata was studied in mangroves along the coast of Tanzania using stable isotopes (13C and 15N) and sediment particle size analysis. The 13C and 15N stable isotope composition in mangrove leaves, sediments and invertebrate tissues, were used to evaluate whether there are differences in feeding ecology of the crab Austruca occidentalis and the snail Littoraria subvittata collected from natural mangroves and mangroves around the salt ponds. Organic C, total N content and particle size distribution in sediments were used to assess if there are differences in habitat characteristics of mangroves around the salt ponds. Mangrove leaves and sediments were found to be 13C enriched around salt ponds compared to those from natural mangroves. Likewise the macroinvertebrates collected from mangroves around salt ponds were found be enriched in 13C relative to undisturbed mangroves. In addition, mangrove sediments around salt ponds were poorer in organic carbon and nitrogen and had more sand content compared to sediments from natural mangroves. These results indicate that salt pond activities have contributed to the modification of the habitats of macroinvertebrates by causing δ13C stable isotopes enrichment and alteration of sediment characteristics in the ecosystem.

Background: Genome-wide data are invaluable to characterize differentiation and adaptation of natural populations. Reduced representation sequencing (RRS) subsamples a genome repeatedly across many individuals. However, RRS requires careful optimization and fine-tuning to deliver high marker density while being cost-efficient. The number of genomic fragments created through restriction enzyme digestion and the sequencing library setup must match to achieve sufficient sequencing coverage per locus. Here, we present a workflow based on published information and computational and experimental procedures to investigate and streamline the applicability of RRS. Results: In an iterative process genome size estimates, restriction enzymes and size selection windows were tested and scaled in six classes of Antarctic animals (Ostracoda, Malacostraca, Bivalvia, Asteroidea, Actinopterygii, Aves). Achieving high marker density would be expensive in amphipods, the malacostracan target taxon, due to the large genome size. We propose alternative approaches such as mitogenome or target capture sequencing for this group. Pilot libraries were sequenced for all other target taxa. Ostracods, bivalves, sea stars, and fish showed overall good coverage and marker numbers for downstream population genomic analyses. In contrast, the bird test library produced low coverage and few polymorphic loci, likely due to degraded DNA. Conclusions: Prior testing and optimization are important to identify which groups are amenable for RRS and where alternative methods may currently offer better cost-benefit ratios. The steps outlined here are easy to follow for other non-model taxa with little genomic resources, thus stimulating efficient resource use for the many pressing research questions in molecular ecology., SCOPUS: ar.j, info:eu-repo/semantics/published

Estimates of population structure and gene flow allow exploring the historical and contemporary processes that determine a species’ biogeographic pattern. In mangroves, large-scale genetic studies to estimate gene flow have been conducted predominantly in the Indo-Pacific and Atlantic region. Here we examine the genetic diversity and connectivity of Rhizophora mucronata across a > 3,000 km coastal stretch in the Western Indian Ocean (WIO) including WIO islands. Based on 359 trees from 13 populations and using 17 polymorphic microsatellite loci we detected genetic breaks between populations of the (1) East African coastline, (2) Mozambique Channel Area (3) granitic Seychelles, and (4) Aldabra and northern Madagascar. Genetic structure, diversity levels, and patterns of inferred connectivity, aligned with the directionality of major ocean currents, driven by bifurcation of the South Equatorial Current, northward into the East African Coastal Current and southward into the Mozambique Channel Area. A secondary genetic break between nearby populations in the Delagoa Bight coincided with high inbreeding levels and fixed loci. Results illustrate how oceanographic processes can connect and separate mangrove populations regardless of geographic distance., SCOPUS: ar.j, info:eu-repo/semantics/published

Coral reefs provide essential goods and services but are degrading at an alarming rate due to local and global anthropogenic stressors. The main limitation that prevents the implementation of adequate conservation measures is that connectivity and genetic structure of populations are poorly known. Here, the genetic diversity and connectivity of the brooding scleractinian coral Seriatopora hystrix were assessed at two scales by genotyping ten microsatellite markers for 356 individual colonies. S. hystrix showed high differentiation, both at large scale between the Red Sea and the Western Indian Ocean (WIO), and at smaller scale along the coast of East Africa. As such high levels of differentiation might indicate the presence of more than one species, a haploweb analysis was conducted with the nuclear marker ITS2, confirming that the Red Sea populations are genetically distinct from the WIO ones. Based on microsatellite analyses three groups could be distinguished within the WIO: (1) northern Madagascar, (2) south-west Madagascar together with one site in northern Mozambique (Nacala) and (3) all other sites in northern Mozambique, Tanzania and Kenya. These patterns of restricted connectivity could be explained by the short pelagic larval duration of S. hystrix, and/or by oceanographic factors, such as eddies in the Mozambique Channel (causing larval retention in northern Madagascar but facilitating dispersal from northern Mozambique towards south-west Madagascar). This study provides an additional line of evidence supporting the conservation priority status of the Northern Mozambique Channel and should inform coral reef management decisions in the region., SCOPUS: ar.j, info:eu-repo/semantics/published

Background Efficient transfer of chemical signals is important for successful mating in many animal species. Multiple evolutionary lineages of animals evolved direct sex pheromone transmission during traumatic mating—the wounding of the partner with specialized devices—which helps to avoid signal loss to the environment. Although such direct transmission modes of so-called allohormone pheromones are well-documented in invertebrates, they are considered rare in vertebrates. Males of several species of the frog genus Plectrohyla (Hylidae, Anura) have elongated teeth and develop swollen lips during the breeding season. Here we investigated the possibility that these structures are used to scratch the females’ skin and apply allohormone pheromones during traumatic mating in several Plectrohyla species. Results Our behavioural observations revealed that males press their upper jaw onto the females’ dorsum during amplexus, leaving small skin scratches with their teeth. Histological examinations of the males’ lips identified specialized mucus glands, resembling known amphibian pheromone glands. Whole-transcriptome sequencing of these breeding glands showed high expression of sodefrin precursor-like factor (SPF) proteins, which are known to have a pheromone function in multiple amphibian species. Conclusions Our study suggests SPF delivery via traumatic mating in several anuran species: the males have specialized breeding glands in the lips for production and secretion and use their elongated teeth as wounding devices for application. We hypothesize that these SPF proteins end up in the females’ circulatory system, where understanding their exact function will require further molecular, physiological and behavioural testing. Supplementary Information The online version contains supplementary material available at 10.1186/s12983-021-00445-6.

Background Chemical communication is an important aspect of the behavioural ecology of a wide range of mammals. In dogs and other carnivores, anal sac glands are thought to convey information to conspecifics by secreting a pallet of small volatile molecules produced by symbiotic bacteria. Because these glands are unique to carnivores, it is unclear how their secretions relate to those of other placental mammals that make use of different tissues and secretions for chemical communication. Here we analyse the anal sac glands of domestic dogs to verify the secretion of proteins and infer their evolutionary relationship to those involved in the chemical communication of non-carnivoran mammals. Results Proteomic analysis of anal sac gland secretions of 17 dogs revealed the consistently abundant presence of three related proteins. Homology searches against online databases indicate that these proteins are evolutionary related to ‘odorant binding proteins’ (OBPs) found in a wide range of mammalian secretions and known to contribute to chemical communication. Screening of the dog’s genome sequence show that the newly discovered OBPs are encoded by a single cluster of three genes in the pseudoautosomal region of the X-chromosome. Comparative genomic screening indicates that the same locus is shared by a wide range of placental mammals and that it originated at least before the radiation of extant placental orders. Phylogenetic analyses suggest a dynamic evolution of gene duplication and loss, resulting in large gene clusters in some placental taxa and recurrent loss of this locus in others. The homology of OBPs in canid anal sac glands and those found in other mammalian secretions implies that these proteins maintained a function in chemical communication throughout mammalian evolutionary history by multiple shifts in expression between secretory tissues involved in signal release and nasal mucosa involved in signal reception. Conclusions Our study elucidates a poorly understood part of the biology of a species that lives in close association with humans. In addition, it shows that the protein repertoire underlying chemical communication in mammals is more evolutionarily stable than the variation of involved glands and tissues would suggest.

The Coral Triangle region contains the world’s highest marine biodiversity, however, these reefs are also the most threatened by global and local threats. A main limitation that prevents the implementation of adequate conservation measures is that connectivity and genetic structure of populations is poorly known. The aim of this study was to investigate the genetic diversity, population structure and connectivity patterns of tropical corals in Indonesia on two different spatial scales, as well as by comparing two different reproduction strategies. Genotyping was based on microsatellite markers for 316 individual Seriatopora hystrix colonies and 142 Acropora millepora colonies sampled in Pulau Seribu and Spermonde Archipelago in 2012 and 2013. Differences in allelic diversity and a strong signature of divergence associated with historical land barriers at the Sunda Shelf were found for the brooding coral Seriatopora hystrix. However, differences in diversity and divergence were not pronounced in the broadcast spawning coral Acropora millepora. Within Spermonde Archipelago, two groups were identified: (1) sites of the sheltered inner-shelf and mid-shelf, which were found to be highly interconnected and (2) mid-shelf and outer-shelf sites characterised by higher differentiation. These patterns of contemporary dispersal barriers and genetic diversity can be explained by the differences in life history of the corals, as well as by oceanographic conditions facilitating larval dispersal. The contemporary dispersal barriers found within the Spermonde Archipelago emphasise the need for incorporating connectivity data in future conservation efforts.

Background The timing of events in the early part of the breeding season is crucially important for successful reproduction. Long-lived animals that migrate large distances independently of each other meet at the breeding sites to re-establish their pair bonds and coordinate their breeding duties with their partners. Methods Using miniature light-geolocation and immersion data together with blood stable isotopes, we studied the early breeding season in Thin-billed prions Pachyptila belcheri, Antarctic prions P. desolata and Blue petrels Halobaena caerulea breeding at Kerguelen Islands in the Indian Ocean. These three species exhibit differences in their winter habitat and timing of migration, moult and breeding. We hypothesised that these differences would influence their behaviour during the early breeding season. Results In line with our hypothesis, we found clear differences not only in the timing of colony attendance, but also in the time budgets while at sea and in habitat use. Both early breeding Blue petrels and late breeding Antarctic prions spent about 8 h per day in flight and 15 h foraging. In comparison, Thin-billed prions, which breed in mid-summer, spent less time (5 h daily) in flight and more time (18 h daily) foraging, thus maximizing the time spent foraging during the longest daylight days of the year. While the ecological habitat parameters (sea temperature, wind, productivity) of Thin-billed prions and Blue petrels were relatively stable throughout the year, Antarctic prions showed clear niche switching, caused by leapfrogging between the northernmost winter distribution to the southernmost distribution during the early breeding season. Blood stable isotopes confirmed the habitat switch between the inter-breeding and early breeding periods and highlighted trophic segregation with Blue petrels feeding more on fish and Antarctic petrels more on crustaceans during the early breeding period. Conclusion We found that the three sympatric petrel species segregated in time and space, both in the winter and the early breeding season. The interplay of timing and distribution meant that the three species show the full range of migratory strategies, from niche-tracking Blue petrels to niche-switching Antarctic prions. The latitudinal distribution resembled the leapfrogging of terrestrial avian migrant species or populations.

Background Energy landscapes provide an approach to the mechanistic basis of spatial ecology and decision-making in animals. This is based on the quantification of the variation in the energy costs of movements through a given environment, as well as how these costs vary in time and for different animal populations. Organisms as diverse as fish, mammals, and birds will move in areas of the energy landscape that result in minimised costs and maximised energy gain. Recently, energy landscapes have been used to link energy gain and variable energy costs of foraging to breeding success, revealing their potential use for understanding demographic changes. Methods Using GPS-temperature-depth and tri-axial accelerometer loggers, stable isotope and molecular analyses of the diet, and leucocyte counts, we studied the response of gentoo (Pygoscelis papua) and chinstrap (Pygoscelis antarcticus) penguins to different energy landscapes and resources. We compared species and gentoo penguin populations with contrasting population trends. Results Between populations, gentoo penguins from Livingston Island (Antarctica), a site with positive population trends, foraged in energy landscape sectors that implied lower foraging costs per energy gained compared with those around New Island (Falkland/Malvinas Islands; sub-Antarctic), a breeding site with fluctuating energy costs of foraging, breeding success and populations. Between species, chinstrap penguins foraged in sectors of the energy landscape with lower foraging costs per bottom time, a proxy for energy gain. They also showed lower physiological stress, as revealed by leucocyte counts, and higher breeding success than gentoo penguins. In terms of diet, we found a flexible foraging ecology in gentoo penguins but a narrow foraging niche for chinstraps. Conclusions The lower foraging costs incurred by the gentoo penguins from Livingston, may favour a higher breeding success that would explain the species’ positive population trend in the Antarctic Peninsula. The lower foraging costs in chinstrap penguins may also explain their higher breeding success, compared to gentoos from Antarctica but not their negative population trend. Altogether, our results suggest a link between energy landscapes and breeding success mediated by the physiological condition. Supplementary Information The online version contains supplementary material available at 10.1186/s40462-021-00255-9.

Mercury (Hg) is a toxic metal that accumulates in organisms and biomagnifies along food webs; hence, long‐lived predators such as seabirds are at risk as a result of high Hg bioaccumulation. Seabirds have been widely used to monitor the contamination of marine ecosystems. In the present study, we investigated Hg concentrations in blood, muscle, and feathers of 7 procellariform seabirds breeding on the Chatham Islands, New Zealand. Using bulk and compound‐specific stable isotope ratios of carbon and nitrogen as a proxy of trophic position and distribution, we also tested whether Hg contamination is related to the species‐specific feeding ecology. Mercury exposure varied widely within the seabird community. The highest contaminated species, the Magenta petrel, had approximately 29 times more Hg in its blood than the broad‐billed prion, and approximately 35 times more Hg in its feathers than the grey‐backed storm petrel. Variations of Hg concentrations in blood and feathers were significantly and positively linked to feeding habitats and trophic position, highlighting the occurrence of efficient Hg biomagnification processes along the food web. Species and feeding habitats were the 2 main drivers of Hg exposure within the seabird community. The Pterodroma species had high blood and feather Hg concentrations, which can be caused by their specific physiology and/or because of their foraging behavior during the interbreeding period (i.e., from the Tasman Sea to the Humboldt Current system). These 2 threatened species are at risk of suffering detrimental effects from Hg contamination and further studies are required to investigate potential negative impacts, especially on their reproduction capability. Environ Toxicol Chem 2021;40:454–472. © 2020 The Authors. Environmental Toxicology and Chemistry published by Wiley Periodicals LLC on behalf of SETAC., Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659

Ageratina havanensis (Kunth) R. M. King &amp, H. Robinson is a species of flowering shrub in the family Asteraceae, native to the Caribbean and Texas. The aim of this work was to compare the quantitative chemical composition of extracts obtained from Ageratina havanensis in its flowering and vegetative stages with the antioxidant potential and to determine the effects on P-glycoprotein (P-gp) function. The quantitative chemical composition of the extracts was determined quantifying their major flavonoids by UPLC-ESI-MS/MS and by PCA analysis. The effects of the extracts on P-gp activity was evaluated by Rhodamine 123 assay, antioxidant properties were determined by DPPH, FRAP and inhibition of lipid peroxidation methods. The obtained results show that major flavonoids were present in higher concentrations in vegetative stage than flowering stage. In particular, the extracts obtained in the flowering season showed a significantly higher ability to sequester free radicals compared to those of the vegetative season, meanwhile, the extracts obtained during the vegetative stage showed a significant inhibitory effect against brain lipid peroxidation and a strong reductive capacity. This study also showed the inhibitory effects of all ethanolic extracts on P-gp function in 4T1 cell line, these effects were unrelated to the phenological stage. This work shows, therefore, the first evidence on: the inhibition of P-gp function, the antioxidant effects and the content of major flavonoids of Ageratina havanensis. According to the obtained results, the species Ageratina havanensis (Kunth) R. M. King &amp, H. Robinson could be a source of new potential inhibitors of drug efflux mediated by P-gp. A special focus on all these aspects must be taking into account for future studies.

Microbiome disruptions triggering disease outbreaks are increasingly threatening corals worldwide. In the Tropical Eastern Pacific, a necrotic-patch disease affecting gorgonian corals (sea fans, Pacifigorgia spp.) has been observed in recent years. However, the composition of the microbiome and its disease-related disruptions remain unknown in these gorgonian corals. Therefore, we analysed 16S rRNA gene amplicons from tissues of healthy colonies (n = 19) and from symptomatic-asymptomatic tissues of diseased colonies (n = 19) of Pacifigorgia cairnsi (Gorgoniidae: Octocorallia) in order to test for disease-related changes in the bacterial microbiome. We found that potential endosymbionts (mostly Endozoicomonas spp.) dominate the core microbiome in healthy colonies. Moreover, healthy tissues differed in community composition and functional profile from those of the symptomatic tissues but did not show differences to asymptomatic tissues of the diseased colonies. A more diverse set of bacteria was observed in symptomatic tissues, together with the decline in abundance of the potential endosymbionts from the healthy core microbiome. Furthermore, according to a comparative taxonomy-based functional profiling, these symptomatic tissues were characterized by the increase in heterotrophic, ammonia oxidizer and dehalogenating bacteria and by the depletion of nitrite and sulphate reducers. Overall, our results suggest that the bacterial microbiome associated with the disease behaves opportunistically and is likely in a state of microbial dysbiosis. We also conclude that the confinement of the disease-related consortium to symptomatic tissues may facilitate colony recovery.

The rapidly growing coastal population in East Africa has led to increased exploitation of shellfish and incidences of habitat degradation. This study analysed fragments (554 base pairs) of the cytochrome oxidase subunit I gene and eight microsatellite loci from 199 DNA extracts of giant mud crabs collected from anthropogenic-polluted mangroves of mainland Tanzania in order to describe the patterns of genetic diversity and gene flow. Correlation and regression analysis showed that the measured indices of genetic diversity and connectivity are not associated with the reported levels of trace metal pollution. Both mitochondrial and microsatellite DNA did not show significant differentiation, suggesting that gene flow is high enough to counteract the effect of pollution on genetic diversity and differentiation. Apart from that, microsatellite DNA showed that mangroves in major coastal cities and mangroves affected by salt farming activities are associated with low effective population size compared to mangroves in protected areas. Since the human coastal population is expanding rapidly, measures should be taken to strengthen the existing marine parks and reserves and to promote sustainable use of coastal resources.

The Cercosaurini tribe stands out from other Gymnophthalmidae lizards for including several species with morphological adaptations to aquatic lifestyle (“Crocodile-Like Morphology” – CLM). Recent molecular phylogenies of Cercosaurini demonstrated the paraphyly of CLM species, implicitly suggesting that adaptations to the aquatic life evolved more than once. However, CLM species have remained poorly sampled, and a number of uncertainties persist, such as the monophyly of Neusticurus and the placement of Potamites apodemus within the tribe. Based on a more extensive molecular and morphological data set, we propose a phylogenetic hypothesis for Neusticurus and investigate, for the first time, the phylogenetic position of P. apodemus. We recovered a monophyletic Neusticurus clade; however, Neusticurus rudis as currently understood was recovered as paraphyletic, with two lineages that also show consistent morphological diagnosis; as a result, we resurrect and provide a taxonomic redescription of Neusticurus surinamensis Müller,. Moreover, because P. apodemus was recovered as sister to all other Echinosaura, we propose a new combination for this species (Echinosaura apodema). We also review the distribution of Neusticurus species, offering a comprehensive view of their biogeography. Lastly, our ancestral character reconstruction and dating analyses indicate that the CLM phenotype evolved four times independently during Cercosaurini′s evolutionary history. We hypothesize that the CLM phenotype and subsequent adaptation to aquatic life may be linked to the development of the Pebas Lake in western Amazonia during the Miocene.

International audience; Our ability to predict the identity of future invasive alien species is largely based upon knowledge of prior invasion history. Emerging alien species-those never encountered as aliens before-therefore pose a significant challenge to biosecurity interventions worldwide. Understanding their temporal trends, origins, and the drivers of their spread is pivotal to improving prevention and risk assessment tools. Here, we use a database of 45,984 first records of 16,019 established alien species to investigate the temporal dynamics of occurrences of emerging alien species worldwide. Even after many centuries of invasions the rate of emergence of new alien species is still high: Onequarter of first records during 2000-2005 were of species that had not been previously recorded anywhere as alien, though with large variation across taxa. Model results show that the high proportion of emerging alien species cannot be solely explained by increases in well-known drivers such as the amount of imported commodities from historically important source regions. Instead, these dynamics reflect the incorporation of new regions into the pool of potential alien species, likely as a consequence of expanding trade networks and environmental change. This process compensates for the depletion of the historically important source species pool through successive invasions. We estimate that 1-16% of all species on Earth, depending on the taxonomic group, qualify as potential alien species. These results suggest that there remains a high proportion of emerging alien species we have yet to encounter, with future impacts that are difficult to predict.

To investigate gene-flow patterns in the western Indian Ocean (WIO), tissue samples of Terebralia palustris were collected along the coasts of East Africa and Madagascar. A fragment of the mitochondrial cyto- chrome c oxidase subunit I (COI) gene was sequenced in 308 individuals from 18 sites. Based on a COI fragment of 624 base pairs, 43 haplotypes were identified. The two most abundant haplotypes were shared among all sample sites, but 20.9% of the haplotypes were restricted to the sites in southern Mozambique. Population expansion was found and confirmed by moderate haplotype diversity, low nucleotide diversity and the analysis of demographic history. Analysis of molecular variances (AMOVA) revealed significant genetic differentiation among populations (φst = 0.10, P ≤ 0.001). Pairwise φst and a hierarchical AMOVA (φct = 0.04, P = 0.01) suggest significant genetic differentiation among five regions: (1) northern Kenya, (2) Kenya, Tanzania and western Madagascar, (3) northeastern Madagascar, (4) southern Madagascar and (5) southern Mozambique. Since the analysis of isolation by distance did not show a sig- nificant correlation between geographic distance and genetic differentiation, even though the maximum distance between sites is about 3,050 km (Z = 7,513.89, r = 0.12, P = 0.08), the complex oceanography in the WIO could be the main factor that restricts gene flow.

Os dados estão depositados em Australian Antarctic Data Centre e disponíveis em https://doi.org/10.4225/15/5955d989a1940 Gelatinous zooplankton are a large component of the animal biomass in all marine environments, but are considered to be uncommon in the diet of most marine top predators. However, the diets of key predator groups like seabirds have conventionally been assessed from stomach content analyses, which cannot detect most gelatinous prey. As marine top predators are used to identify changes in the overall species composition of marine ecosystems, such biases in dietary assessment may impact our detection of important ecosystem regime shifts. We investigated albatross diet using DNA metabarcoding of scats to assess the prevalence of gelatinous zooplankton consumption by two albatross species, one of which is used as an indicator species for ecosystem monitoring. Black-browed and Campbell albatross scats were collected from eight breeding colonies covering the circumpolar range of these birds over two consecutive breeding seasons. Fish was the main dietary item at most sites; however, cnidarian DNA, primarily from scyphozoan jellyfish, was present in 42% of samples overall and up to 80% of samples at some sites. Jellyfish was detected during all breeding stages and consumed by adults and chicks. Trawl fishery catches of jellyfish near the Falkland Islands indicate a similar frequency of jellyfish occurrence in albatross diets in years of high and low jellyfish availability, suggesting jellyfish consumption may be selective rather than opportunistic. Warmer oceans and overfishing of finfish are predicted to favour jellyfish population increases, and we demonstrate here that dietary DNA metabarcoding enables measurements of the contribution of gelatinous zooplankton to the diet of marine predators. Australian Antarctic Science; Winifred Violet Scott Charitable Trust; Fundação para a Ciência e a Tecnologia (FCT) info:eu-repo/semantics/publishedVersion

The original version of this Article did not acknowledge Mark de Bruyn as part of the FishPopTrace consortium. This has not been corrected in the PDF and HTML versions of the Article.

International audience; Background: In long-lived seabirds that migrate large distances independently of each other, the early part ofthe breeding season is crucially important for a successful reproductive attempt. During this phase, pair bondsare re-established and partners coordinate their breeding duties. We studied the early breeding season in Thinbilledprions Pachyptila belcheri breeding in the Atlantic Ocean (Falkland/Malvinas Islands) and Indian Ocean (Kerguelen).Despite overlap in the wintering areas, these two populations exhibit differences in their timing and direction ofmigration. We hypothesised that these differences would influence behaviour during the early breeding season.Results: In line with our hypothesis, we found very strong differences in colony attendance patterns. Thin-billed prions ofthe Falkland population spent the late winter period over shelf waters close to the colony, first arrived back at the colonyin September, and attended the nests interruptedly for one month, before departing on a pre-laying exodus. In contrast,Kerguelen birds remained in the non-breeding areas until mid-October and spent much less time attending the burrowbefore their pre-laying exodus. Despite this asynchronous arrival to the two colonies, the subsequent patterns resulted inremarkably synchronous incubation in both populations, with males taking on the first long incubation shift in lateNovember, whereas females returned to sea soon after egg laying. During the pre-laying exodus and incubation, Thinbilledprions from the Falklands spread north over the Patagonian Shelf, while prions from Kerguelen travelled muchfurther, reaching southern oceanic waters and moved at faster speeds (> 400 km per day). Although prions fromKerguelen moved much further, their isotopic niches were considerably narrower, suggesting a stronger dependence onAntarctic waters.Conclusions: The study thus suggests that Thin-billed prions show a high intraspecific plasticity in their use of eitherneritic or oceanic waters during the early breeding season. Breeding birds from the Falkland Islands can exploit anextensive shelf area, while Kerguelen birds have adapted to the need to forage in distant southern open waters. Thisdifference in foraging ecology may thus have shaped the phenology of the early breeding phase.

Pulau Redang and Pulau Tioman have experienced huge tourism growth over the last two decades, but minimal sewage treatment may threaten the resilience of their coral reefs. This study uses stable isotope techniques to identify suitable bioindicators of sewage nutrients (δ15N) at these islands by measuring macroalgae (Lobophora spp.), gastropods (Drupella spp.), scleractinian coral (Acropora spp.), and leather coral (Sinularia spp.). At tourist hubs using seepage septic tank systems, enrichment of Acropora δ15N (Redang, +0.7‰) and Sinularia δ15N (Tioman, +0.4‰) compared to pristine background levels indicate enhanced sewage nutrient discharge. Carbon isotopes and survey data suggest that sedimentation did not confound these δ15N trends. Potential damaging effects of sewage discharge on the coral reef communities at both islands are highlighted by strong correlations between Acropora δ15N and regional variation in coral reef community structure, and exclusive occurrence of degraded reefs at regions of high sewage influence.

Soil organisms, including earthworms, are a key component of terrestrial ecosystems. However, little is known about their diversity, their distribution, and the threats affecting them. We compiled a global dataset of sampled earthworm communities from 6928 sites in 57 countries as a basis for predicting patterns in earthworm diversity, abundance, and biomass. We found that local species richness and abundance typically peaked at higher latitudes, displaying patterns opposite to those observed in aboveground organisms. However, high species dissimilarity across tropical locations may cause diversity across the entirety of the tropics to be higher than elsewhere. Climate variables were found to be more important in shaping earthworm communities than soil properties or habitat cover. These findings suggest that climate change may have serious implications for earthworm communities and for the functions they provide., 677232 to N.E.). K.S.R. and W.H.v.d.P. were supported by ERC-ADV grant 323020 to W.H.v.d.P. Also supported by iDiv (DFG FZT118) Flexpool proposal 34600850 (C.A.G. and N.E.); the Academy of Finland (285882) and the Natural Sciences and Engineering Research Council of Canada (postdoctoral fellowship and RGPIN-2019-05758) (E.K.C.); DOB Ecology (T.W.C., J.v.d.H., and D.R.); ERC-AdG 694368 (M.R.); and the TULIP Laboratory of Excellence (ANR-10-LABX-41) (M.L.). In addition, data collection was funded by the Russian Foundation for Basic Research (12-04-01538-a, 12-04-01734-a, 14-44-03666-r_center_a, 15-29-02724-ofi_m, 16-04-01878-a 19-05-00245); Tarbiat Modares University; Aurora Organic Dairy; UGC(NERO) (F. 1-6/Acctt./NERO/2007-08/1485); Natural Sciences and Engineering Research Council (RGPIN-2017-05391); Slovak Research and Development Agency (APVV-0098-12); Science for Global Development through Wageningen University; Norman Borlaug LEAP Programme and International Atomic Energy Agency (IAEA); São Paulo Research Foundation - FAPESP (12/22510-8); Oklahoma Agricultural Experiment Station; INIA - Spanish Agency (SUM 2006-00012-00-0); Royal Canadian Geographical Society; Environmental Protection Agency (Ireland) (2005-S-LS-8); University of Hawai‘i at Mānoa (HAW01127H; HAW01123M); European Union FP7 (FunDivEurope, 265171); U.S. Department of the Navy, Commander Pacific Fleet (W9126G-13-2-0047); Science and Engineering Research Board (SB/SO/AS-030/2013) Department of Science and Technology, New Delhi, India; Strategic Environmental Research and Development Program (SERDP) of the U.S. Department of Defense (RC-1542); Maranhão State Research Foundation (FAPEMA); Coordination for the Improvement of Higher Education Personnel (CAPES); Ministry of Education, Youth and Sports of the Czech Republic (LTT17033); Colorado Wheat Research Foundation; Zone Atelier Alpes, French National Research Agency (ANR-11-BSV7-020-01, ANR-09-STRA-02-01, ANR 06 BIODIV 009-01); Austrian Science Fund (P16027, T441); Landwirtschaftliche Rentenbank Frankfurt am Main; Welsh Government and the European Agricultural Fund for Rural Development (Project Ref. A AAB 62 03 qA731606); SÉPAQ; Ministry of Agriculture and Forestry of Finland; Science Foundation Ireland (EEB0061); University of Toronto (Faculty of Forestry); National Science and Engineering Research Council of Canada; Haliburton Forest and Wildlife Reserve; NKU College of Arts and Sciences Grant; Österreichische Forschungsförderungsgesellschaft (837393 and 837426); Mountain Agriculture Research Unit of the University of Innsbruck; Higher Education Commission of Pakistan; Kerala Forest Research Institute, Peechi, Kerala; UNEP/GEF/TSBF-CIAT Project on Conservation and Sustainable Management of Belowground Biodiversity; Ministry of Agriculture and Forestry of Finland; Complutense University of Madrid/European Union FP7 project BioBio (FPU UCM 613520); GRDC; AWI; LWRRDC; DRDC; CONICET (National Scientific and Technical Research Council) and FONCyT (National Agency of Scientific and Technological Promotion) (PICT, PAE, PIP), Universidad Nacional de Luján y FONCyT [PICT 2293 (2006)], Fonds de recherche sur la nature et les technologies du Québec (131894), Deutsche Forschungsgemeinschaft [SCHR1000/3-1, SCHR1000/6-1, 6-2 (FOR 1598), WO 670/7-1, WO 670/7-2, and SCHA 1719/1-2], CONACYT (FONDOS MIXTOS TABASCO/PROYECTO11316); NSF (DGE-0549245, DGE-0549245, DEB-BE-0909452, NSF1241932); Institute for Environmental Science and Policy at the University of Illinois at Chicago; Dean’s Scholar Program at UIC; Garden Club of America Zone VI Fellowship in Urban Forestry from the Casey Tree Endowment Fund; J. E. Weaver Competitive Grant from the Nebraska Chapter of The Nature Conservancy; the College of Liberal Arts and Sciences at DePaul University; Elmore Hadley Award for Research in Ecology and Evolution from the UIC Dept. of Biological Sciences; Spanish CICYT (AMB96-1161; REN2000-0783/GLO; REN2003-05553/GLO; REN2003-03989/GLO; CGL2007-60661/BOS); Yokohama National University; MEXT KAKENHI (25220104); Japan Society for the Promotion of Science KAKENHI (25281053, 17KT0074, 25252026); ADEME (0775C0035); Ministry of Science, Innovation and Universities of Spain (CGL2017-86926-P); Syngenta Philippines; UPSTREAM; LTSER (Val Mazia/Matschertal); Marie Sklodowska Curie Postdoctoral Fellowship (747607); National Science and Technology Base Resource Survey Project of China (2018FY100306); McKnight Foundation (14-168); Program of Fundamental Researches of Presidium of Russian Academy of Sciences (AAAA-A18-118021490070-5); Brazilian National Council of Research CNPq; and French Ministry of Foreign and European Affairs. Author contributions: H.R.P.P. led the analysis, data curation, and writing of the original manuscript draft. C.A.G. assisted in analyses and writing of the original manuscript draft. E.K.C. and N.E. revised subsequent manuscript drafts. J.v.d.H., D.R., and T.W.C. provided additional analyses. E.K.C., N.E., and M.P.T. acquired funding for the project. J.K., K.B.G., B.S., M.L.C.B., M.J.I.B., and G.B. contributed to data curation. H.R.P.P., C.A.G., M.L.C.B., M.J.I.B., G.B., O.F., A.O., E.M.B., J.B., U.B., T.D., F.T.d.V., B.K.-R., M.L., J.M., C.M., W.H.v.d.P., K.S.R., M.C.R., D.R., M.R., M.P.T., D.H.W., D.A.W., E.K.C., and N.E. contributed to the project conceptualization. All authors reviewed and edited the final draft manuscript. The majority of the authors provided data for the analyses. Competing interests: The authors declare no competing interests. Data and materials availability: Data and analysis code are available on the iDiv Data repository (DOI: 10.25829/idiv.1804-5-2593) and GitHub (https://github.com/helenphillips/GlobalEWDiversity; DOI: 10.5281/zenodo.3386456).

The study of systematics in wide-ranging seabirds can be challenging due to the vast geographic scales involved, as well as the possible discordance between molecular, morphological and behavioral data. In the Southern Ocean, macaroni penguins (Eudyptes chrysolophus) are distributed over a circumpolar range including populations in Antarctic and sub-Antarctic areas. Macquarie Island, in its relative isolation, is home to a closely related endemic taxon — the royal penguin (Eudyptes schlegeli), which is distinguishable from E. chrysolophus mainly by facial coloration. Although these sister taxa are widely accepted as representing distinct species based on morphological grounds, the extent of their genome-wide differentiation remains uncertain. In this study, we use genome-wide Single Nucleotide Polymorphisms to test genetic differentiation between these geographically isolated taxa and evaluate the main drivers of population structure among breeding colonies of macaroni/royal penguins. Genetic similarity observed between macaroni and royal penguins suggests they constitute a single evolutionary unit. Nevertheless, royal penguins exhibited a tendency to cluster only with macaroni individuals from Kerguelen Island, suggesting that dispersal occurs mainly between these neighboring colonies. A stepping stone model of differentiation of macaroni/royal populations was further supported by a strong pattern of isolation by distance detected across its whole distribution range, possibly driven by large geographic distances between colonies as well as natal philopatry. However, we also detected intraspecific genomic differentiation between Antarctic and sub-Antarctic populations of macaroni penguins, highlighting the role of environmental factors together with geographic distance in the processes of genetic differentiation between Antarctic and sub-Antarctic waters.

15 pages, 7 figures, 2 tables, supplementary material, Speciation through homoploid hybridization (HHS) is considered extremely rare in animals. This is mainly because the establishment of reproductive isolation as a product of hybridization is uncommon. Additionally, many traits are underpinned by polygeny and/or incomplete dominance, where the hybrid phenotype is an additive blend of parental characteristics. Phenotypically intermediate hybrids are usually at a fitness disadvantage compared with parental species and tend to vanish through backcrossing with parental population(s). It is therefore unknown whether the additive nature of hybrid traits in itself could lead successfully to HHS. Using a multi-marker genetic data set and a meta-analysis of diet and morphology, we investigated a potential case of HHS in the prions (Pachyptila spp.), seabirds distinguished by their bills, prey choice, and timing of breeding. Using approximate Bayesian computation, we show that the medium-billed Salvin’s prion (Pachyptila salvini) could be a hybrid between the narrow-billed Antarctic prion (Pachyptila desolata) and broad-billed prion (Pachyptila vittata). Remarkably, P. salvini’s intermediate bill width has given it a feeding advantage with respect to the other Pachyptila species, allowing it to consume a broader range of prey, potentially increasing its fitness. Available metadata showed that P. salvini is also intermediate in breeding phenology and, with no overlap in breeding times, it is effectively reproductively isolated from either parental species through allochrony. These results provide evidence for a case of HHS in nature, and show for the first time that additivity of divergent parental traits alone can lead directly to increased hybrid fitness and reproductive isolation, This work was supported by the Deutsche Forschungsgemeinschaft (Germany), Heisenberg program (grant number DFG, Qu 148-5 to P.Q.), a CGS award from the Natural Environment Research Council (NERC), the Institut Polaire Français Paul Emile Victor (Programme N°109, to H.W.), the Terres Australes et Antarctiques Françaises (Kerguelen), Mohamed bin Zayed Species Conservation Fund and the Brian Mason Scientific and Technical Trust (Chatham Islands)

Chemical communication is an important aspect of courtship and reproduction in salamanders ( Urodela ), where males secrete several protein pheromones from various sexually dimorphic glands. The most widely used sex pheromone system consists of proteins of the Sodefrin Precursor-like Factor (SPF) family. This protein family already started diversifying through gene duplications in the Late Palaeozoic and continued to do so in various urodelan lineages. As a result, males of multiple extant salamander species secrete different sets or ratios of SPF protein pheromones which, as shown in behavioral tests, can evoke various female responses during the courtship process, such as following behavior, cloacal gaping, or an acceleration of courtship in general. Still, all observable effects essentially are a consequence of female receptivity enhancement, indicating a preserved role for SPF pheromones. Salamandridae is a large family with currently 119 described species that show a considerable variety in courtship behaviour. In this family, different lineages evolved various modes of pheromone transfer, ranging from direct application during amplexus on land, to an indirect transfer in which males abandoned physical contact and instead tail-fan pheromones underwater toward a nearby female. In one genus, an additional decapeptide pheromone, sodefrin, originated by cleavage from a precursor of the SPF family and was co-opted alongside uncleaved SPF protein pheromones. Here we discuss our current understanding and knowledge gaps on the use of the SPF pheromone system in salamandrids, and we define some testable hypotheses on its evolution in relation to changes in mating habitat and courtship modes.

The protection of marine biodiversity is considered a global priority, as exemplified in the Convention on Biological Diversity's Aichi targets and in Sustainable Development Goal 14. Marine protected areas (MPAs) are considered to be effective conservation and fisheries management tools that generate various ecological and social-economic benefits. MPAs come in all types and sizes, and are managed following different principles, users' needs, and preferences. Madagascar's unique marine biodiversity is currently protected under a range of MPA regimes that emerged comparatively recently, long after the terrestrial protected areas. This study describes the historical outline of the MPA development process in Madagascar, and proposes inputs for the future management of MPAs. A policy arrangement approach to structure an iterative Delphi survey was used to analyse how discourse, actors, rules and resources have shaped MPA development in Madagascar. The findings suggest that international initiatives and funding have played a key role in the early days of MPA emergence, while currently co-management between governmental and non-governmental actors shows mixed results regarding conservation effectiveness. Challenges include a better coordination of efforts among various stakeholders, granting a large responsibility to local communities, e.g. in the successful locally managed marine areas (LMMAs), and integrating customary law into the set of regulations for marine conservation and sustainable management in Madagascar.

Aim: To test hypothesized biogeographic partitions of the tropical Indo-Pacific Ocean with phylogeographic data from 56 taxa, and to evaluate the strength and nature of barriers emerging from this test. Location: The Indo-Pacific Ocean. Time period: Pliocene through the Holocene. Major taxa studied: Fifty-six marine species. Methods: We tested eight biogeographic hypotheses for partitioning of the Indo-Pacific using a novel modification to analysis of molecular variance. Putative barriers to gene flow emerging from this analysis were evaluated for pairwise ΦST, and these ΦST distributions were compared to distributions from randomized datasets and simple coalescent simulations of vicariance arising from the Last Glacial Maximum. We then weighed the relative contribution of distance versus environmental or geographic barriers to pairwise ΦST with a distance-based redundancy analysis (dbRDA). Results: We observed a diversity of outcomes, although the majority of species fit a few broad biogeographic regions. Repeated coalescent simulation of a simple vicariance model yielded a wide distribution of pairwise ΦST that was very similar to empirical distributions observed across five putative barriers to gene flow. Three of these barriers had median ΦST that were significantly larger than random expectation. Only 21 of 52 species analysed with dbRDA rejected the null model. Among these, 15 had overwater distance as a significant predictor of pairwise ΦST, while 11 were significant for geographic or environmental barriers other than distance. Main conclusions: Although there is support for three previously described barriers, phylogeographic discordance in the Indo-Pacific Ocean indicates incongruity between processes shaping the distributions of diversity at the species and population levels. Among the many possible causes of this incongruity, genetic drift provides the most compelling explanation: given massive effective population sizes of Indo-Pacific species, even hard vicariance for tens of thousands of years can yield ΦSTvalues that range from 0 to nearly 0.5.

International audience; Anomaloglossus is a species-rich genus of frogs endemic to the Guiana Shield that still harbors several unnamed species. Within the A. stepheni species group (which includes four valid nominal species), A. baeobatrachus has an uncertain taxonomic status, notably because the holotype was an unvouchered specimen depicted in a popular journal. Another member of this group, A. leopardus, was only superficially described, lacking information on the sex of specimens in the type series and on advertisement call. Therefore, these two taxa need clarifications in order to allow the description of the extant undescribed species. In this paper, we redescribe A. baeobatrachus based on newly collected material from the species type locality and provide information about its reproductive ecology. We also provide an amended definition of A. leopardus using newly collected material from its type locality. These two species form a clade along with a third species from the Eastern Guiana Shield, which is also described herein. The reproductive biology of A. baeobatrachus and A. stepheni is very similar. Both species have endotrophic and nidicolous tadpoles, despite being distantly related, suggesting independent evolution of this breeding mode. The new species and A. leopardus, on the other hand, have exotrophic tadpoles.

Neotropical sipo snakes (Chironius) are large diurnal snakes with a long tail and big eyes that differ from other Neotropical snakes in having 10 or 12 dorsal scale rows at midbody. The 22 currently recognized species occur from Central America south to Uruguay and northeastern Argentina. Based on the largest geographical sampling to date including ∼90% of all species, we analyzed one nuclear and three mitochondrial genes using phylogenetic methods to (1) test the monophyly of Chironius and some of its widely distributed species; (2) identify lineages that could represent undescribed species; and (3) reconstruct ancestral distributions. Our best hypothesis placed C. grandisquamis (Chocoan Rainforest) + C. challenger (Pantepui) as sister to all other species. Based on phylogeny and geographic distribution, we identified 14 subclades as putative species within Chironius fuscus, C. multiventris (including C. foveatus and C. laurenti), C. monticola, and C. exoletus. Under current taxonomy, these species show nearly twice as much genetic diversity as other species of Chironius for ND4. Biogeographical analyses using BioGeoBEARS suggest that current distribution patterns of Chironius species across South America resulted from multiple range expansions. The MRCA of the clade C. challenger + C. grandisquamis was most likely distributed over the Pantepui region, the Andes, and the Chocoan Rainforest, whereas the remaining lineages probably evolved from an Amazonian ancestor.

Made available in DSpace on 2019-10-04T12:36:27Z (GMT). No. of bitstreams: 0 Previous issue date: 2019-01-01 Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) Guyana Environmental Protection Agency Agencia Nacional de Promocion Cientifica y Tecnologica (ANPCyT) Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) Fonds voor Wetenschappelijk Onderzoek Vlaanderen Belgian Directorate-General for Development Cooperation King Leopold III Fund for Nature Exploration and Conservation National Science Foundation National Geographic The non-monophyly of both the genus Myersiohyla and the Boana punctata group has been recovered in a number of published phylogenetic analyses. In this paper we report on the analysis of sequences of Boana liliae, a species originally assigned to the B. punctata group, in a dataset of Cophomantini that recovered novel phylogenetic relationships for this hylid tribe. Our results reveal Myersiohyla to be paraphyletic with respect to B. liliae. Support for the placement of Myersiohyla kanaima is poor, but this taxon is recovered as the sister taxon of the other Cophomantini genera (excluding Myersiohyla) or as the sister taxon of the remaining species of Myersiohyla (including B. liliae). These results lead us to propose two taxonomic changes in order to remedy the paraphyly of Myersiohyla: (1) a new genus is described for M. kanaima, and (2) Boana liliae is transferred to Myersiohyla. We further provide notes on the natural history and vocalizations of the new monotypic genus, a new diagnosis of the former B. liliae in the context of Myersiohyla, and discuss the evolution of tadpole morphology and biogeography of the earlier diverging clades of Cophomantini. Univ Estadual Paulista, Dept Zool, Lab Herpetol, Av 24A 1515, BR-13506900 Rio Claro, SP, Brazil Univ Estadual Paulista, Inst Biociencias, Ctr Aquicultura, Av 24A 1515, BR-13506900 Rio Claro, SP, Brazil Vrije Univ Brussel, Biol Dept, Amphibian Evolut Lab, Pleinlaan 2, B-1050 Brussels, Belgium Univ Mississippi, Box 1848, University, MS 38677 USA Coastal Plains Inst & Land Conservancy, 1313 Milton St, Tallahassee, FL 32303 USA Florida State Univ, Dept Biol Sci, Tallahassee, FL 32306 USA Consejo Nacl Invest Cient & Tecn, Museo Argentino Ciencias Nat Bernardino Rivadavia, Div Herpetol, Angel Gallardo 470,C1405DJR, Buenos Aires, DF, Argentina Univ Buenos Aires, Fac Ciencias Exactas & Nat, Dept Biodiversidad & Biol Expt, Buenos Aires, DF, Argentina Univ Estadual Paulista, Dept Zool, Lab Herpetol, Av 24A 1515, BR-13506900 Rio Claro, SP, Brazil Univ Estadual Paulista, Inst Biociencias, Ctr Aquicultura, Av 24A 1515, BR-13506900 Rio Claro, SP, Brazil CNPq: 158681/2013-4 Guyana Environmental Protection Agency: 100703BR009 Guyana Environmental Protection Agency: 011206BR065 Guyana Environmental Protection Agency: 120707BR075 Guyana Environmental Protection Agency: 061212BR020 Agencia Nacional de Promocion Cientifica y Tecnologica (ANPCyT): PICT 2013-404, 2015-820 FAPESP: 2012/10000-5 FAPESP: 2013/50741-7 Fonds voor Wetenschappelijk Onderzoek Vlaanderen: FWO12A7614N/FWO12A7617N National Science Foundation: DEB-0206562 National Geographic: 7509-03

The identification of research questions with high relevance for biodiversity conservation is an important step towards designing more effective policies and management actions, and to better allocate funding among alternative conservation options. However, the identification of priority questions may be influenced by regional differences in biodiversity threats and social contexts, and to variations in the perceptions and interests of different stakeholders. Here we describe the results of a prioritization exercise involving six types of stakeholders from the Mediterranean biome, which includes several biodiversity hotspots spread across five regions of the planet (Europe, Africa, North and South America, and Australia). We found great heterogeneity across regions and stakeholder types in the priority topics identified and disagreement among the priorities of research scientists and other stakeholders. However, governance, climate change, and public participation issues were key topics in most regions. We conclude that the identification of research priorities should be targeted in a way that integrates the spectrum of stakeholder interests, potential funding sources and regional needs, and that further development of interdisciplinary studies is required. The key questions identified here provide a basis to identify priorities for research funding aligned with biodiversity conservation needs in this biome. AFB, Grant/Award Number: 17008; Fundação para a Ciência e a Tecnologia, Grant/Award Number: IF/01053/2015; National Research Foundation Incentive Funding, Grant/Award Number: 103841; REN Biodiversity Chair; EDP Biodiversity Chair; COMPETE, Grant/Award Number: PTDC/AAG‐MAA/2261/2014 POCI‐01‐0145‐FEDER‐356 016824; The Society for Conservation Biology

Climate shifts are key drivers of ecosystem change. Despite the critical importance of Antarctica and the Southern Ocean for global climate, the extent of climate-driven ecological change in this region remains controversial. In particular, the biological effects of changing sea ice conditions are poorly understood. We hypothesize that rapid postglacial reductions in sea ice drove biological shifts across multiple widespread Southern Ocean species. We test for demographic shifts driven by climate events over recent millennia by analyzing population genomic datasets spanning 3 penguin genera ( Eudyptes , Pygoscelis , and Aptenodytes ). Demographic analyses for multiple species (macaroni/royal, eastern rockhopper, Adélie, gentoo, king, and emperor) currently inhabiting southern coastlines affected by heavy sea ice conditions during the Last Glacial Maximum (LGM) yielded genetic signatures of near-simultaneous population expansions associated with postglacial warming. Populations of the ice-adapted emperor penguin are inferred to have expanded slightly earlier than those of species requiring ice-free terrain. These concerted high-latitude expansion events contrast with relatively stable or declining demographic histories inferred for 4 penguin species (northern rockhopper, western rockhopper, Fiordland crested, and Snares crested) that apparently persisted throughout the LGM in ice-free habitats. Limited genetic structure detected in all ice-affected species across the vast Southern Ocean may reflect both rapid postglacial colonization of subantarctic and Antarctic shores, in addition to recent genetic exchange among populations. Together, these analyses highlight dramatic, ecosystem-wide responses to past Southern Ocean climate change and suggest potential for further shifts as warming continues.

The Northern Mozambique Channel is a treasure of unique oceanography, rich coral reefs, migrating tuna, and whales, bounded by the Comoros, France, Madagascar, Mozambique, Seychelles, and Tanzania. Its living resources are relatively intact and of great importance for food and livelihood security and the developing economies of its surrounding countries. It holds newly discovered natural gas fields of global importance that could fuel unprecedented development pressure, and its 10 million coastal population could grow an order of magnitude by the turn of the century. With these immense pressures against the backdrop of rapid climate change, effective governance across different sectors and among countries will be essential to maintain the region's natural capital and deliver on the promise of sustainable development and “blue economy” subscribed by the surrounding countries. This chapter outlines some of the novel ocean management and governance approaches that may provide the best chance to deliver on a prosperous future.

Despite great advances, experiments concerning the response of ecosystems to climate change still face considerable challenges, including the high complexity of climate change in terms of environmental variables, constraints in the number and amplitude of climate treatment levels, and the limited scope of responses and interactions covered. Drawing on the expertise of researchers from a variety of disciplines, this Perspective outlines how computational and technological advances can help in designing experiments that can contribute to overcoming these challenges, and also outlines a first application of such an experimental design. We thank the Flemish government (through Hercules Stichting big infrastructure and the Fund for Scientific Research Flanders project G0H4117N) and LSM (Limburg Sterk Merk, project 271) for providing funds to build the UHasselt Ecotron; Hasselt University for both funding and policy support (project BOF12BR01 and Methusalem project 08M03VGRJ); and the ecotron research committee for comments on the experimental design. We also thank Regional Landscape Kempen and Maasland for its collaboration and support. N.W., S.L., A.N. and I.V. are funded by Research Foundation-Flanders (FWO).

Hybridization can leave genealogical signatures in an organism's genome, originating from the parental lineages and persisting over time. This potentially confounds phylogenetic inference methods that aim to represent evolution as a strictly bifurcating tree. We apply a phylotranscriptomic approach to study the evolutionary history of, and test for inter-lineage introgression in the Salamandridae, a Holarctic salamanders group of interest in studies of toxicity and aposematism, courtship behavior, and molecular evolution. Although the relationships between the 21 currently recognized salamandrid genera have been the subject of numerous molecular phylogenetic studies, some branches have remained controversial and sometimes affected by discordances between mitochondrial vs. nuclear trees. To resolve the phylogeny of this family, and understand the source of mito-nuclear discordance, we generated new transcriptomic (RNAseq) data for 20 salamandrids and used these along with published data, including 28 mitochondrial genomes, to obtain a comprehensive nuclear and mitochondrial perspective on salamandrid evolution. Our final phylotranscriptomic data set included 5455 gene alignments for 40 species representing 17 of the 21 salamandrid genera. Using concatenation and species-tree phylogenetic methods, we find (1) Salamandrina sister to the clade of the “True Salamanders” (consisting of Chioglossa, Mertensiella, Lyciasalamandra, and Salamandra), (2) Ichthyosaura sister to the Near Eastern genera Neurergus and Ommatotriton, (3) Triturus sister to Lissotriton, and (4) Cynops paraphyletic with respect to Paramesotriton and Pachytriton. Combining introgression tests and phylogenetic networks, we find evidence for introgression among taxa within the clades of “Modern Asian Newts” and “Modern European Newts”. However, we could not unambiguously identify the number, position, and direction of introgressive events. Combining evidence from nuclear gene analysis with the observed mito-nuclear phylogenetic discordances, we hypothesize a scenario with hybridization and mitochondrial capture among ancestral lineages of (1) Lissotriton into Ichthyosaura and (2) Triturus into Calotriton, plus introgression of nuclear genes from Triturus into Lissotriton. Furthermore, both mitochondrial capture and nuclear introgression may have occurred among lineages assigned to Cynops. More comprehensive genomic data will, in the future, allow testing this against alternative scenarios involving hybridization with other, extinct lineages of newts., LR, MH and MVen were supported by the Deutsche Forschungsgemeinschaft (grant VE247/16-1 – HO 3492/6-1) in the framework of the “TaxonOmics” priority program. II was supported by a Juan de la Cierva Incorporación postdoctoral fellowship (IJCI-2016- 29566) from the Spanish Ministry of Economy and Competitiviness (MINECO). ES was supported by the Deutscher Akademischer Austauschdienst (DAAD).

Background Differences in species richness among phylogenetic clades are attributed to clade age and/or variation in diversification rates. Access to ecological opportunity may trigger a temporary increase in diversification rates and ecomorphological variation. In addition, lower body temperatures in poikilothermic animals may result in decreasing speciation rates as proposed by the metabolic theory of ecology. For strictly freshwater organisms, environmental gradients within a river continuum, linked to elevation and temperature, might promote access to ecological opportunity and alter metabolic rates, eventually influencing speciation and extinction processes. To test these hypotheses, we investigated the influence of environmental temperature and elevation, as proxies for body temperature and ecological opportunity, respectively, on speciation rates and ecomorphological divergence. As model systems served two closely related gastropod genera with unequal species richness and habitat preferences – Pseudamnicola and Corrosella. Results Lineage-through-time plots and Bayesian macroevolutionary modeling evidenced that Pseudamnicola species, which typically live in lower reaches of rivers, displayed significantly elevated speciation rates in comparison to the ‘headwater genus’ Corrosella. Moreover, state-dependent speciation models suggested that the speciation rate increased with decreasing elevation, supporting the ecological opportunity hypothesis. In contrast, a significant effect of environmental temperature, as proposed by the metabolic theory of ecology, could not be observed. Disparity-through-time plots, models of ecomorphological evolution, and ancestral habitat estimation showed for Pseudamnicola species rapid morphological divergence shortly after periods of elevational and habitat divergence. In contrast, Corrosella species did not deviate from null models of drift-like evolution. Conclusion Our finding that speciation rates are correlated with elevation and ecomorphological disparity but not with environmental temperatures suggests that differences in ecological opportunity may have played a key role in Corrosella and Pseudamnicola diversifications. We propose that Pseudamnicola lineages experienced higher ecological opportunity through dispersal to new locations or habitats in lowlands, which may explain the increase in speciation rates and morphological change. In contrast, the evolution of Corrosella in headwaters is likely less facilitated by the environment and more by non-ecological processes. Electronic supplementary material The online version of this article (10.1186/s12862-018-1169-2) contains supplementary material, which is available to authorized users.

Aim: The aim of this study was to test historical and contemporary influences on population structure in the giant clams, Tridacna maxima (Roding, 1798) and T. crocea (Lamarck, 1819). To refine the location of clade boundaries within a newly resurrected species, Tridacna noae (Roding, 1798). Location: Indo-Australian archipelago, including Indonesia, the Philippines, Australia, Papua New Guinea, the Solomon Islands, Republic of Kiribati, the Line Islands and Taiwan. Methods: We used isolation-migration (IMa) coalescent models and distance-based redundancy analyses (dbRDA) to test the relative influence of barriers and continuous distances on historical divergence, gene flow and population structure of T. maxima and T. crocea. Continuous metrics of distance included present-day and Last Glacial Maximum overwater distances along with probability of larval dispersal (LD) among sampling sites. We combined new mitochondrial cytochrome oxidase subunit I (mtDNA COI) sequences with existing data to compile the largest data set of these species yet analysed. Results: The Pleistocene land barriers of the Sunda Shelf and Torres Strait were associated with old (>0.5 Myr) divergence times. The western and eastern boundaries of the Halmahera Eddy were also locations of significant, but more recent, divergence. No gene flow was detected across any of the four barriers tested. Larval dispersal distances between sampling sites were significant predictors of T. crocea population structure, accounting for differentiation above and beyond the contribution of barriers. We further delineated the species range of T. noae and showed that its two known clades are sympatric in central Indonesia. Main conclusions: The strong signature of historical barriers on genetic differentiation argues against the assumption that Indo-Pacific Tridacna are open meta-populations. Despite similar life histories, T. maxima and T. crocea differ in their mtDNA population structure. The widespread species (T. maxima) exhibits population structure linked solely with historical factors, whereas T. crocea's population structure reflects both historical factors and LD distances.

In this contribution, we determine the genetic population structure in the Skunk Clownfish (Amphiprion akallopsisos) across the Indian Ocean, and on a smaller geographic scale in the Western Indian Ocean (WIO). Highly restricted gene flow was discovered between populations on either side of the Indian Ocean using the control region as a mitochondrial marker (mtDNA). We verify this conclusion using 13 microsatellite markers and infer fine scale genetic structuring within the WIO. In total 387 samples from 21 sites were analysed using mtDNA and 13 microsatellite loci. Analysis included estimation of genetic diversity and population differentiation. A haplotype network was inferred using mtDNA. Nuclear markers were used in Bayesian clustering and a principal component analysis. Both markers confirmed strong genetic differentiation between WIO and Eastern Indian Ocean (EIO) populations, and a shallower population structure among Malagasy and East African mainland populations. Limited gene flow across the Mozambique Channel may be explained by its complex oceanography, which could cause local retention of larvae, limiting dispersal between Madagascar and the East African coast. Two other potential current-mediated barriers to larval dispersal suggested in the WIO, the split of the SEC at approximately 10° S and the convergence of the Somali Current with the East African Coast Current at approximately 3° S, were not found to form a barrier to gene flow in this species.

Populations of the clown anemonefish in Spermonde Archipelago, one of the main collection sites for ornamental fish in Indonesia, are potentially overfished, which might lead to a reduction in population size and genetic diversity. Loss of genetic diversity can reduce the adaptability, population persistence and productivity of the targeted species. Therefore, a study investigating the genetic diversity and its potential correlation to population densities of A. ocellaris was conducted. Two islands were chosen as study sites that differed in the degree of exploitation. Barrang Lompo has a high fishing pressure, whereas Samalona has less. Underwater visual censuses showed that population densities in Samalona were threefold higher than in Barrang Lompo (p = 0.005). Analysis of eight microsatellite loci in 364 tissue samples of A. ocellaris revealed that genetic diversity (numbers of alleles, private alleles, and allelic richness) was significantly reduced at the island with high fishing pressure. Allelic richness was also positively correlated with fish density (p < 0.05). These results indicate that ornamental fishery might be a factor contributing to the loss of genetic diversity in A. ocellaris. Therefore, the marine ornamental trade in Spermonde Archipelago needs to be managed (e.g., management of the fishing strategy, implementation of marine protected areas, regular monitoring, and quota determination). Otherwise the populations of A. ocellaris might collapse.