1. Clinical detection of four emerging canine diarrhea-associated viruses and evolutionary analysis of canine kobuvirus.
- Author
-
Yu Y, Yao Y, Shan H, and Han X
- Subjects
- Dogs, Animals, Sensitivity and Specificity, Feces virology, China, Evolution, Molecular, Dog Diseases virology, Dog Diseases diagnosis, Kobuvirus genetics, Kobuvirus isolation & purification, Kobuvirus classification, Diarrhea virology, Diarrhea veterinary, Diarrhea diagnosis, Multiplex Polymerase Chain Reaction veterinary, Multiplex Polymerase Chain Reaction methods, Phylogeny
- Abstract
In this study, a multiplex PCR method was developed for the detection of four diarrhea-associated viruses of canines, including canine bocavirus (CBoV), canine circovirus (CCV), torque teno canis virus (TTCV), and canine kobuvirus (CKV). Four pairs of compatible primers, one specific for each virus, were designed based on conserved sequences. After optimization of parameters such as primer concentration and annealing temperature in single and multiple amplifications, four specific fragments were amplified simultaneously with high sensitivity and specificity in one PCR reaction. The fragments amplified were 165 bp (CBoV), 345 bp (CCV), 506 bp (TTCV), and 666 bp (CKV) in length. The sensitivity of this one-step multiplex PCR is about 10 times lower than that of regular singleplex PCR. There was no cross-reaction with the canine pathogens canine parvovirus (CPV), canine distemper virus (CDV), or canine coronavirus (CCoV). Testing of canine fecal samples from China using the multiplex PCR assay revealed the presence of CBoV, CCV, TTCV, and CKV in 10.1%, 6.2%, 2.8%, and 1.7% of the samples, respectively. The results of multiplex PCR agreed with the singleplex PCR results with a coincidence rate of 100%. In addition, the complete genome sequences of the viruses in three CKV-positive samples were determined and found to be 95.7 - 96.6% identical to the reference strain US-PC0082 and genetically more distant from other animal kobuvirus. The multiplex PCR method established in this study is convenient, with high specificity and sensitivity, which will be helpful for the rapid differential diagnosis of CBoV, CCV, TTCV, and CKV infections., Competing Interests: Declarations Ethical approval All animal experiments conformed to the guidelines and regulatory requirements established by the Animal Care and Use Committee of Qingdao Agricultural University, Shandong Province, China. The owners’ consent was obtained to collect samples from diarrheic dogs. Conflict of interest All authors declare no conflict of interest., (© 2024. The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature.)
- Published
- 2024
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