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A yellow pigmented, Gram-stain-negative, aerobic bacterium designated A5.7 T was studied to evaluate the taxonomic position following the modern polyphasic approach. The strain was isolated from sediments near Zhairuo Island, which is situated in the East China Sea. Cells were non-spore forming rods without flagella but showed motility by gliding. Growth was observed at 15-35°C (optimum 28°C), pH 6.0-9.0 (optimum pH 6.5) and 0-2% (w/v) NaCl (optimum 0-0.5%) in LB broth. The major respiratory quinone of A5.7 T was menaquinone 6. The major polar lipid of A5.7 T was phosphatidylethanolamine and the predominant fatty acids (> 5%) were iso-C 15:0 , iso-C 17:0 3-OH, C 15:1 ω6c, iso-C 15:0 3-OH, iso-C 15:1 G, summed feature 3 (C 16:1 ω7c and/or C 16:1 ω6c) and summed feature 9 (iso-C 17:1 ω9c and/or C 16:0 10-methyl). Phylogenetic analysis based on 16S rRNA gene sequences showed that the isolate belongs to the genus Flavobacterium and shares the highest sequence similarities with Flavobacterium sharifuzzamanii A7.6 T (98.5%), Flavobacterium tistrianum GB 56.1 T (98.3%), Flavobacterium nitrogenifigens NXU-44 T (97.8%), Flavobacterium anhuiense D3 T (97.6%), Flavobacterium ginsenosidimutans THG 01 T (97.6%), and Flavobacterium foetidum CJ42 T (97.6%). Digital DNA-DNA hybridization and average nucleotide identity values between the strain and its closest phylogenetic neighbors showed the ranges from 19.6 to 34.1% and 73.7 to 87.9%, respectively. Therefore, based on polyphasic characteristics, strain A5.7 T represents a novel species of the genus Flavobacterium for which the name Flavobacterium zhairuonensis sp. nov. is proposed. The type strain is A5.7 T (= KCTC 62406 T = MCCC 1K03494 T ).

A novel bacterial strain A7.6 T was isolated from the sediments collected near the Zhairuo Island located in the East China Sea and characterized using a polyphasic approach. Cells were Gram-stain-negative, rod-shaped, non-spore forming, non-flagellated but motile by gliding. The strain was aerobic, positive for oxidase and catalase activities. The strain can grow at 4-35 °C, pH 5.5-9.0, and 0-3% (w/v) NaCl concentration. The major polar lipid was phosphatidylethanolamine, the predominant fatty acids (> 10%) were iso-C 15:0 and summed feature 3 (C 16:1 ω7c and/or C 16:1 ω6c). The genomic G+C content was 33.6 mol% and the major respiratory quinone was menaquinone 6. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain A7.6 T belonged to the genus Flavobacterium and was closely related to Flavobacterium tistrianum GB 56.1 T (98.4% similarity), F. nitrogenifigens NXU-44 T (98.4%), F. ginsenosidimutans THG 01 T (98.0%) and F. anhuiense D3 T (97.7%). Average nucleotide identities and digital DNA-DNA hybridizations values for genomes ranged from 75.9 to 91.4% and 21.4 to 43.9% between strain A7.6 T and its closest phylogenetic neighbors. The polyphasic characterization indicated that strain A7.6 T represented a novel species of the genus Flavobacterium, for which the name Flavobacterium sharifuzzamanii is proposed. The type strain is A7.6 T (= KCTC 62405 T  = MCCC 1K03485 T ). The NCBI GenBank accession number for the 16S rRNA gene of A7.6 T is MH396692, and for the genome sequence is QJGZ00000000. The digital protologue database (DPD) Taxon Number is TA00643.

Yeast Saccharomyces cerevisiae strains isolated from different sources generally show extensive genetic and phenotypic diversity. Understanding how genomic variations influence phenotypes is important for developing strategies with improved economic traits. The diploid S. cerevisiae strain NY1308 is used for cellulosic bioethanol production. Whole genome sequencing identified an extensive amount of single nucleotide variations and small insertions/deletions in the genome of NY1308 compared with the S288c genome. Gene annotation of the assembled NY1308 genome showed that 43 unique genes are absent in the S288c genome. Phylogenetic analysis suggested most of the unique genes were obtained through horizontal gene transfer from other species. RNA-Seq revealed that some unique genes were not functional in NY1308 due to unidentified intron sequences. During bioethanol fermentation, NY1308 tends to flocculate when certain inhibitors (derived from the pretreatment of cellulosic feedstock) are present in the fermentation medium. qRT-PCR and genetic manipulation confirmed that the novel gene, NYn43, contributed to the flocculation ability of NY1308. Deletion of NYn43 resulted in a faster fermentation rate for NY1308. This work disclosed the genetic characterization of a bioethanol-producing S. cerevisiae strain and provided a useful paradigm showing how the genetic diversity of the yeast population would facilitate the personalized development of desirable traits.

Freshly isolated cells are used as an ideal experimental model in in vitro toxicology analysis, especially the detection of diverse xenobiotics induced genotoxic effects. In present study, heavy metals (Zn, Cu, Cd, Pb) and PCBs were selected as representative xenobiotics to verify the ability of in vitro model in assessing genotoxic effects in cells of marine mussels (Mytilus galloprovincialis). DNA damage and chromosome aberration were assessed in freshly isolated cells from haemolymph, gill and digestive gland by single cell gel electrophoresis and micronucleus assay respectively. Gill cells showed more sensitive to Zn exposure among three types of cells, indicating tissue-specific genotoxicity. Significantly higher DNA aberrations were induced by Cu in haemocytes compared to Cd and Pb, indicating chemical-specific genotoxicity. An additive effect was detected after combined heavy metals and PCBs exposure, suggesting the interaction of selected xenobiotics. To our knowledge, this is the first attempt to study the complex effects of organic and/or inorganic contaminants using freshly isolated cells from marine mussels. Genetic responses are proved to occur and maintained in vitro in relation to short-term xenobiotics induced stresses. The utilization of the in vitro model could provide a rapid tool to investigate the comprehensive toxic effects in marine invertebrates and monitor environmental health., (Copyright © 2017. Published by Elsevier Ltd.)

Aspergillus sp. Z5, isolated from the gut of marine isopods, produces prolific secondary metabolites with new structure and bioactivity. Here, we report the draft sequence of the approximately 33.8-Mbp genome of this strain. To the best of our knowledge, this is the first genome sequence of Aspergillus strain isolated from marine isopod Ligia oceanica. The phylogenetic analysis supported that this strain was closely related to A. versicolor, and genomic analysis revealed that Aspergillus sp. Z5 shared a high degree of colinearity with the genome of A. sydowii. Our results may facilitate studies on discovering the biosynthetic pathways of secondary metabolites and elucidating their evolution in this species.

Aim of the Study: Proteomic approach was applied to identify differential protein expressed in brain of rats with type 1 diabetes mellitus (T1DM) in order to search for potential biomarkers for pathological changes of brain with T1DM., Methods: Proteins were extracted from brain tissues of T1DM rats and healthy control rats, separated by 2-DE and identified by MALDI-TOF-MS. The results were validated by Western blot analysis and immunohistochemistry (IHC)., Results: A total of 8 proteins from the 24 differentially expressed spots were identified by MALDI-TOF-MS. The proteins identified were vitamin D-dependent calcium-binding protein, creatine kinase B-type (B-CK), myosin light chain kinase (MLCK), HSP60 and HSP71, ATP synthase, cyclin-G, pantothenate kinase-1 (PANK1), respectively. 3 proteins were up-regulated and 5 proteins were down-regulated from the T1DM rats. Of the 8 proteins identified, MLCK was confirmed by Western blot and IHC., Conclusion: This work demonstrates that a comprehensive strategy of proteomic identification should be a useful tool for understanding of diabetic encephalopathy mechanism. And the differential proteins such as MLCK may be give clues about the pathogenesis of diabetic encephalopathy., (© J. A. Barth Verlag in Georg Thieme Verlag KG Stuttgart · New York.)

Objective: To investigate the effect of envelope protein mutation on HBV assembly., Methods: The envelope protein mutated vectors were constructed by the molecular clone in vitro, and then transfected transiently in the cell HepG2. The expression and secretion of S protein was assay by ELISA. HBV DNA was quantitatively evaluated by PCR. After co-transfection with pHBV-mS1S and adwR9 the DNA was quantitatively evaluated by PCR., Results: There was no significant difference in expression and secretion of S protein assayed by ELISA in the cytoplasm and supernatant among pHBV-mS1, pHBV-mS, pHBV-mS1S and the wild HBV adwR9 plasmid. The DNA detected by real-time fluorescence quantitative PCR from those the cytoplasm of mutants was higher than that from the wild HBV adwR9 cytoplasm, especially from the cytoplasm of pHBV-mS1S plasmid. However, the DNA detected by real-time fluorescence quantitative PCR from the supernatant of those mutants was lower than that from the wild HBV adwR9 supernatant, especially from pHBV-mS1S. The DNA detected by real-time fluorescence quantitative PCR from the supernatant co-transfected with pHBV-mS1S and adwR9 was lower than that from the supernatant co-transfected with pcDNA3 and adwR9., Conclusion: There was no effect of envelope protein mutation on the expression and secretion of S protein. Envelope protein mutation could interfere the assembly of HBV particle and cause reduction of secretion of HBV.

Objective: To explore the effect and mechanism on HBV replication in C gene truncated mutant., Methods: Protein expression of C gene truncated vector and wild C gene vector were assay by SDS-PAGE Western blot. Constructed C gene truncated expression vector was cotransfected with wild HBV genome; virus load was detected by PCR in the culture medium and the cell. The formation of core particle was assay by Native western blot., Results: The recombinant vectors can efficiently express. Virus load of the cotransfected group by pcDNA3-deltaC and adwR9 was lower than that of control group in the culture medium and the cell. Protein band of the co-expressed group by pcDNA3-deltaC and pcDNA3-C showed slightly weaker than that of the co-expressed group by pcDNA3 and pcDNA3-C., Conclusion: C gene truncated mutant could interfere with the formation of core particle and reduce of HBV replication