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Flavobacterium sharifuzzamanii sp. nov., Isolated from the Sediments of the East China Sea.
- Source :
-
Current microbiology [Curr Microbiol] 2019 Mar; Vol. 76 (3), pp. 297-303. Date of Electronic Publication: 2019 Jan 02. - Publication Year :
- 2019
-
Abstract
- A novel bacterial strain A7.6 <superscript>T</superscript> was isolated from the sediments collected near the Zhairuo Island located in the East China Sea and characterized using a polyphasic approach. Cells were Gram-stain-negative, rod-shaped, non-spore forming, non-flagellated but motile by gliding. The strain was aerobic, positive for oxidase and catalase activities. The strain can grow at 4-35 °C, pH 5.5-9.0, and 0-3% (w/v) NaCl concentration. The major polar lipid was phosphatidylethanolamine, the predominant fatty acids (> 10%) were iso-C <subscript>15:0</subscript> and summed feature 3 (C <subscript>16:1</subscript> ω7c and/or C <subscript>16:1</subscript> ω6c). The genomic G+C content was 33.6 mol% and the major respiratory quinone was menaquinone 6. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain A7.6 <superscript>T</superscript> belonged to the genus Flavobacterium and was closely related to Flavobacterium tistrianum GB 56.1 <superscript>T</superscript> (98.4% similarity), F. nitrogenifigens NXU-44 <superscript>T</superscript> (98.4%), F. ginsenosidimutans THG 01 <superscript>T</superscript> (98.0%) and F. anhuiense D3 <superscript>T</superscript> (97.7%). Average nucleotide identities and digital DNA-DNA hybridizations values for genomes ranged from 75.9 to 91.4% and 21.4 to 43.9% between strain A7.6 <superscript>T</superscript> and its closest phylogenetic neighbors. The polyphasic characterization indicated that strain A7.6 <superscript>T</superscript> represented a novel species of the genus Flavobacterium, for which the name Flavobacterium sharifuzzamanii is proposed. The type strain is A7.6 <superscript>T</superscript> (= KCTC 62405 <superscript>T</superscript> = MCCC 1K03485 <superscript>T</superscript> ). The NCBI GenBank accession number for the 16S rRNA gene of A7.6 <superscript>T</superscript> is MH396692, and for the genome sequence is QJGZ00000000. The digital protologue database (DPD) Taxon Number is TA00643.
- Subjects :
- Base Composition
China
DNA, Bacterial genetics
Fatty Acids analysis
Flavobacterium chemistry
Genome, Bacterial genetics
Hydrogen-Ion Concentration
Phospholipids analysis
Quinones analysis
RNA, Ribosomal, 16S genetics
Sequence Analysis, DNA
Sodium Chloride
Temperature
Flavobacterium classification
Flavobacterium physiology
Geologic Sediments microbiology
Oceans and Seas
Phylogeny
Subjects
Details
- Language :
- English
- ISSN :
- 1432-0991
- Volume :
- 76
- Issue :
- 3
- Database :
- MEDLINE
- Journal :
- Current microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 30603961
- Full Text :
- https://doi.org/10.1007/s00284-018-1609-7