1. Dual Processing of R-Loops and Topoisomerase I Induces Transcription-Dependent DNA Double-Strand Breaks
- Author
-
Agnese, Cristini, Giulia, Ricci, Sébastien, Britton, Simona, Salimbeni, Shar-Yin Naomi, Huang, Jessica, Marinello, Patrick, Calsou, Yves, Pommier, Gilles, Favre, Giovanni, Capranico, Natalia, Gromak, Olivier, Sordet, Centre de Recherches en Cancérologie de Toulouse (CRCT), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), University of Pisa - Università di Pisa, Institut de pharmacologie et de biologie structurale (IPBS), Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées, Department of Pharmacy and Biotechnology [Bologna, Italy], University of Bologna [Italy], Laboratory of Molecular Pharmacology, National Institutes of Health [Bethesda] (NIH)-National Cancer Institute [Bethesda] (NCI-NIH), National Institutes of Health [Bethesda] (NIH), Cristini A., Ricci G., Britton S., Salimbeni S., Huang S.-Y.N., Marinello J., Calsou P., Pommier Y., Favre G., Capranico G., Gromak N., Sordet O., Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS), and Britton, Sébastien
- Subjects
XPF ,Flap Endonucleases ,[SDV]Life Sciences [q-bio] ,topoisomerase I ,DNA repair ,[SDV.BC]Life Sciences [q-bio]/Cellular Biology ,[SDV.BC.BC]Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC] ,[SDV.BBM.BM] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology ,Article ,Cell Line ,neurodegenerative disease ,[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology ,[SDV.BC.BC] Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC] ,Humans ,DNA Breaks, Double-Stranded ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,DNA Breaks, Single-Stranded ,Senataxin ,lcsh:QH301-705.5 ,[SDV.BC] Life Sciences [q-bio]/Cellular Biology ,ComputingMilieux_MISCELLANEOUS ,TDP1 ,RNA/DNA hybrid ,Nuclear Proteins ,[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology ,Endonucleases ,DNA-Binding Proteins ,[SDV] Life Sciences [q-bio] ,DNA Topoisomerases, Type I ,lcsh:Biology (General) ,DNA double-strand break ,R-loop ,R-Loop Structures ,transcription ,Transcription Factors - Abstract
Summary: Although accumulation of DNA damage and genomic instability in resting cells can cause neurodegenerative disorders, our understanding of how transcription produces DNA double-strand breaks (DSBs) is limited. Transcription-blocking topoisomerase I cleavage complexes (TOP1ccs) are frequent events that prime DSB production in non-replicating cells. Here, we report a mechanism of their formation by showing that they arise from two nearby single-strand breaks (SSBs) on opposing DNA strands: one SSB from the removal of transcription-blocking TOP1ccs by the TDP1 pathway and the other from the cleavage of R-loops by endonucleases, including XPF, XPG, and FEN1. Genetic defects in TOP1cc removal (TDP1, PNKP, and XRCC1) or in the resolution of R-loops (SETX) enhance DSB formation and prevent their repair. Such deficiencies cause neurological disorders. Owing to the high frequency of TOP1cc trapping and the widespread distribution of R-loops, these persistent transcriptional DSBs could accumulate over time in neuronal cells, contributing to the neurodegenerative diseases. : Cristini et al. identify a mechanism of DSB formation in non-replicating cells, which strictly depends on transcription. They are formed by two single-strand breaks on opposing DNA strands resulting from the processing of both R-loops and topoisomerase I, and genetic defects increasing these transcriptional DSBs cause neurological disorders. Keywords: DNA double-strand breaks, transcription, R-loops, topoisomerase I, neurodegenerative diseases, DNA repair, TDP1, XPF, Senataxin, RNA/DNA hybrid
- Published
- 2019
- Full Text
- View/download PDF