1. Deletion of Many Yeast Introns Reveals a Minority of Genes that Require Splicing for Function
- Author
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Julie Parenteau, Mathieu Durand, Geneviève Morin, Julien Gervais-Bird, Steeve Véronneau, Raymund J. Wellinger, David Brunelle, Bojana Cecez, Andrée-Anne Lacombe, Benoit Chabot, Sherif Abou Elela, Valérie Guérin, and ChuShin Koh
- Subjects
Saccharomyces cerevisiae Proteins ,RNA Splicing ,Genes, Fungal ,Saccharomyces cerevisiae ,Biology ,Splicing factor ,Exon ,Minor spliceosome ,Gene Expression Regulation, Fungal ,Group I catalytic intron ,Selection, Genetic ,Deoxyribonucleases, Type II Site-Specific ,Promoter Regions, Genetic ,Molecular Biology ,Gene ,Cytoskeleton ,Sequence Deletion ,Genetics ,Gene Expression Profiling ,Intron ,Articles ,Cell Biology ,Group II intron ,Introns ,Phenotype ,RNA splicing - Abstract
Splicing regulates gene expression and contributes to proteomic diversity in higher eukaryotes. However, in yeast only 283 of the 6000 genes contain introns and their impact on cell function is not clear. To assess the contribution of introns to cell function, we initiated large-scale intron deletions in yeast with the ultimate goal of creating an intron-free model eukaryote. We show that about one-third of yeast introns are not essential for growth. Only three intron deletions caused severe growth defects, but normal growth was restored in all cases by expressing the intronless mRNA from a heterologous promoter. Twenty percent of the intron deletions caused minor phenotypes under different growth conditions. Strikingly, the combined deletion of all introns from the 15 cytoskeleton-related genes did not affect growth or strain fitness. Together, our results show that although the presence of introns may optimize gene expression and provide benefit under stress, a majority of introns could be removed with minor consequences on growth under laboratory conditions, supporting the view that many introns could be phased out of Saccharomyces cerevisiae without blocking cell growth.
- Published
- 2008
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