1,348 results on '"DENIS, Y."'
Search Results
2. Structural Basis for Evasion of New SARS-CoV-2 Variants from the Potent Virus-Neutralizing Nanobody Targeting the S-Protein Receptor-Binding Domain
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Sluchanko, Nikolai N., Shcheblyakov, Dmitry V., Varfolomeeva, Larisa A., Favorskaya, Irina A., Dolzhikova, Inna V., Korobkova, Anastasia I., Alekseeva, Irina A., Esmagambetov, Ilias B., Derkaev, Artem A., Prokofiev, Vladimir V., Zorkov, Ilya D., Logunov, Denis Y., Gintsburg, Alexander L., Popov, Vladimir O., and Boyko, Konstantin M.
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- 2024
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3. Bone-periosteal-muscle flap for ulnar lengthening in children with congenital radial club hand
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Natalia V. Avdeychik, Denis Y. Grankin, Ekaterina A. Zakharyan, Natalia S. Galkina, and Andrey V. Safonov
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congenital radial club hand ,children ,ulnar lengthening ,compression-distraction osteosynthesis ,bone-periosteal-muscle flap ,ilizarov method ,Orthopedic surgery ,RD701-811 - Abstract
Background. Congenital radial club hand is characterized by the underdevelopment of all forearm structures. Ulnar bone shortening ranges from 24.7% to 50.0% compared to the intact limb. The aim of the study was to evaluate the outcomes of ulnar lengthening by distraction osteogenesis in patients with congenital radial club hand type IV who underwent osteotomy with the formation of a bone-periosteal-muscle flap, and to compare these results with the treatment outcomes of the patients who had standard (oblique) ulnar osteotomy. Methods. The main group consisted of 20 patients who underwent osteotomy with the formation of a bone-periosteal-muscle flap during ulnar lengthening between 2019 and 2022. The control group included 19 patients (22 forearms) who underwent oblique ulnar osteotomy between 1998 and 2018. The following indicators were evaluated: length of the regenerate, distraction time, correction period, fixation index, osteosynthesis index, and complications. Results. A lengthening of 4.1 cm was achieved (30.7% of the initial ulnar bone length). The correction of angular deformity was 71.4%. Greater correction was achieved with osteotomy in the proximal ulna. In the subgroup with proximal segment osteotomy, the distraction and osteosynthesis indices were 25.6 and 25.7 days/cm, respectively. In the mid-third osteotomy group, these indices were 42.3 and 42.6 days/cm, respectively. Complications were limited to inflammatory phenomena in 30% of cases. All patients in the main group exhibited successful regenerate formation. Thus, the bone fragment with a periosteal-muscle pedicle serves as an additional source of osteogenesis during distraction. Conclusions. This study demonstrates the appropriateness of osteotomy with the formation of a bone-periosteal-muscle flap in children with congenital radial club hand. This technique allows for greater deformity correction, a shortened regenerate formation period, and a reduction in complications.
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- 2024
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4. Development of novel antimicrobials with engineered endolysin LysECD7-SMAP to combat Gram-negative bacterial infections
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Daria V. Vasina, Nataliia P. Antonova, Vladimir A. Gushchin, Andrey V. Aleshkin, Mikhail V. Fursov, Anastasiia D. Fursova, Petya G. Gancheva, Igor V. Grigoriev, Pavel Grinkevich, Alexey V. Kondratev, Alexey V. Kostarnoy, Anastasiya M. Lendel, Valentine V. Makarov, Maria A. Nikiforova, Andrei A. Pochtovyi, Tatiana Prudnikova, Timofey A. Remizov, Natalia V. Shevlyagina, Andrei E. Siniavin, Nina S. Smirnova, Alexander A. Terechov, Artem P. Tkachuk, Evgeny V. Usachev, Aleksei M. Vorobev, Victoria S. Yakimakha, Sergey M. Yudin, Anastasia A. Zackharova, Vladimir G. Zhukhovitsky, Denis Y. Logunov, and Alexander L. Gintsburg
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Engineered endolysin ,Gram-negative bacteria ,Preclinical efficacy ,Dosage forms ,Enzyme-based antibacterial ,Medicine - Abstract
Abstract Background Among the non-traditional antibacterial agents in development, only a few targets critical Gram-negative bacteria such as carbapenem-resistant Pseudomonas aeruginosa, Acinetobacter baumannii or cephalosporin-resistant Enterobacteriaceae. Endolysins and their genetically modified versions meet the World Health Organization criteria for innovation, have a novel mode of antibacterial action, no known bacterial cross-resistance, and are being intensively studied for application against Gram-negative pathogens. Methods The study presents a multidisciplinary approach, including genetic engineering of LysECD7-SMAP and production of recombinant endolysin, its analysis by crystal structure solution following molecular dynamics simulations and evaluation of antibacterial properties. Two types of antimicrobial dosage forms were formulated, resulting in lyophilized powder for injection and hydroxyethylcellulose gel for topical administration. Their efficacy was estimated in the treatment of sepsis, and pneumonia models in BALB/c mice, diabetes-associated wound infection in the leptin receptor-deficient db/db mice and infected burn wounds in rats. Results In this work, we investigate the application strategies of the engineered endolysin LysECD7-SMAP and its dosage forms evaluated in preclinical studies. The catalytic domain of the enzyme shares the conserved structure of endopeptidases containing a putative antimicrobial peptide at the C-terminus of polypeptide chain. The activity of endolysins has been demonstrated against a range of pathogens, such as Klebsiella pneumoniae, A. baumannii, P. aeruginosa, Staphylococcus haemolyticus, Achromobacter spp, Burkholderia cepacia complex and Haemophylus influenzae, including those with multidrug resistance. The efficacy of candidate dosage forms has been confirmed in in vivo studies. Some aspects of the interaction of LysECD7-SMAP with cell wall molecular targets are also discussed. Conclusions Our studies demonstrate the potential of LysECD7-SMAP therapeutics for the systemic or topical treatment of infectious diseases caused by susceptible Gram-negative bacterial species and are critical to proceed LysECD7-SMAP-based antimicrobials trials to advanced stages.
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- 2024
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5. Structural insight into recognition of Clostridioides difficile toxin A by novel neutralizing nanobodies targeting QTIN-like motifs within its receptor-binding domain
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Sluchanko, Nikolai N., Sokolova, Irina V., Favorskaya, Irina A., Esmagambetov, Ilias B., Tukhvatulin, Amir I., Alekseeva, Irina A., Ungur, Anastasiya S., Varfolomeeva, Larisa A., Boyko, Konstantin M., Logunov, Denis Y., Gintsburg, Alexander L., Popov, Vladimir O., Shcheblyakov, Dmitry V., and Belyi, Yury F.
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- 2024
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6. Fluorescence of BODIPY dyes in gas phase at near-ambient conditions
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Maryewski, Xenia A., Larkin, Denis Y., Samoilichenko, Yuri V., Gvozdev, Daniil A., Korshun, Vladimir A., and Ustinov, Alexey V.
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- 2024
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7. Densification of zirconia-based ceramics by non-conventional sintering processes and chemical pathways
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Elissalde, C., Hérisson de Beauvoir, T., Chung, U.-C., Martin, E., Denis, Y., de Landtsheer, J., Suchomel, M.R., Goglio, G., Philippot, G., and Estournès, C.
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- 2024
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8. Emerging Battery Systems with Metal as Active Cathode Material
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Dr. Kaiming Xue, Dr. Huimin Wang, and Prof. Denis Y. W. Yu
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Cation crossover ,dissolution/deposition ,electrolyte ,membrane ,metal cathode ,Industrial electrochemistry ,TP250-261 ,Chemistry ,QD1-999 - Abstract
Abstract The high‐cost and limited availability of raw materials for lithium‐ion batteries hinder their future development and urge researchers to explore alternative battery systems. Among them, batteries utilizing the electrochemical redox reaction of metals such as Cu, Fe, Sn, etc. as the cathode to reversibly store and release energy are attractive because their raw materials are common and abundant. This review examines this type of novel battery system, introduces its basic mechanism and problems, analyses the strategies that are used to improve its reversibility and cycling stability and also proposes some possible future directions of investigations.
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- 2024
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9. New conjugates based on N4-hydroxycytidine with more potent antiviral efficacy in vitro than EIDD-2801 against SARS-CoV-2 and other human coronaviruses
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Siniavin, Andrei E., Gushchin, Vladimir A., Shastina, Natal'ya S., Darnotuk, Elizaveta S., Luyksaar, Sergey I., Russu, Leonid I., Inshakova, Anna M., Shidlovskaya, Elena V., Vasina, Daria V., Kuznetsova, Nadezhda A., Savina, Daria M., Zorkov, Ilya D., Dolzhikova, Inna V., Sheremet, Anna B., Logunov, Denis Y., Zigangirova, Nailya A., and Gintsburg, Alexander L.
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- 2024
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10. Immunogenicity and Efficacy of Combined mRNA Vaccine Against Influenza and SARS-CoV-2 in Mice Animal Models
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Elena P. Mazunina, Vladimir A. Gushchin, Evgeniia N. Bykonia, Denis A. Kleymenov, Andrei E. Siniavin, Sofia R. Kozlova, Evgenya A. Mukasheva, Elena V. Shidlovskaya, Nadezhda A. Kuznetsova, Evgeny V. Usachev, Vladimir I. Zlobin, Elena I. Burtseva, Roman A. Ivanov, Denis Y. Logunov, and Alexander L. Gintsburg
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mRNA vaccine ,seasonal influenza ,SARS-CoV-2 ,combined vaccine ,immunogenicity ,efficacy ,Medicine - Abstract
Background. The combined or multivalent vaccines are actively used in pediatric practice and offer a series of advantages, including a reduced number of injections and visits to the doctor, simplicity of the vaccination schedule and minimization of side effects, easier vaccine monitoring and storage, and lower vaccination costs. The practice of widespread use of the combined vaccines has shown the potential to increase vaccination coverage against single infections. The mRNA platform has been shown to be effective against the COVID-19 pandemic and enables the development of combined vaccines. There are currently no mRNA-based combined vaccines approved for use in humans. Some studies have shown that different mRNA components in a vaccine can interact to increase or decrease the immunogenicity and efficacy of the combined vaccine. Objectives. In the present study, we investigated the possibility of combining the mRNA vaccines, encoding seasonal influenza and SARS-CoV-2 antigens. In our previous works, both vaccine candidates have shown excellent immunogenicity and efficacy profiles in mice. Methods. The mRNA-LNPs were prepared by microfluidic mixing, immunogenicity in mice was assessed by hemagglutination inhibition assay, enzyme-linked immunoassay and virus neutralization assay. Immunological efficacy was assessed in a mouse viral challenge model. Results. In this work, we demonstrated that the individual mRNA components of the combined vaccine did not affect the immunogenicity level of each other. The combined vaccine demonstrated excellent protective efficacy, providing a 100% survival rate when mice were infected with the H1N1 influenza virus and reducing the viral load in the lungs. Four days after the challenge with SARS-CoV-2 EG.5.1.1., no viable virus and low levels of detectable viral RNA were observed in the lungs of vaccinated mice. Conclusions. The combination does not lead to mutual interference between the individual vaccines. We believe that such a combined mRNA-based vaccine could be a good alternative to separated human vaccinations for the prevention of COVID-19 and influenza.
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- 2024
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11. Immunogenicity and Protectivity of Sputnik V Vaccine in hACE2-Transgenic Mice against Homologous and Heterologous SARS-CoV-2 Lineages Including Far-Distanced Omicron BA.5
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Inna V. Dolzhikova, Amir I. Tukhvatulin, Daria M. Grousova, Ilya D. Zorkov, Marina E. Komyakova, Anna A. Ilyukhina, Anna V. Kovyrshina, Artem Y. Shelkov, Andrey G. Botikov, Ekaterina G. Samokhvalova, Dmitrii A. Reshetnikov, Andrey E. Siniavin, Daria M. Savina, Dmitrii V. Shcheblyakov, Fatima M. Izhaeva, Alina S. Dzharullaeva, Alina S. Erokhova, Olga Popova, Tatiana A. Ozharovskaya, Denis I. Zrelkin, Polina P. Goldovskaya, Alexander S. Semikhin, Olga V. Zubkova, Andrey A. Nedorubov, Vladimir A. Gushchin, Boris S. Naroditsky, Denis Y. Logunov, and Alexander L. Gintsburg
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vector vaccine ,cross-protection ,COVID-19 vaccine ,hACE2-transgenic mice ,immunogenicity ,Medicine - Abstract
Background: The SARS-CoV-2 virus continuously acquires mutations, leading to the emergence of new variants. Notably, the effectiveness of global vaccination efforts has significantly declined with the rise and spread of the B.1.1.529 (Omicron) variant. Methods: The study used virological, immunological and histological research methods, as well as methods of working with laboratory animals. In this study, we evaluated the Gam-COVID-Vac (Sputnik V), an adenoviral vaccine developed by the N.F. Gamaleya National Research Center for Epidemiology and Microbiology, and conducted experiments on hemizygous K18-ACE2-transgenic F1 mice. The variants studied included B.1.1.1, B.1.1.7, B.1.351, B.1.1.28/P.1, B.1.617.2, and B.1.1.529 BA.5. Results: Our findings demonstrate that the Sputnik V vaccine elicits a robust humoral and cellular immune response, effectively protecting vaccinated animals from challenges posed by various SARS-CoV-2 variants. However, we observed a notable reduction in vaccine efficacy against the B.1.1.529 (Omicron BA.5) variant. Conclusions: Our results indicate that ongoing monitoring of emerging mutations is crucial to assess vaccine efficacy against new SARS-CoV-2 variants to identify those with pandemic potential. If protective efficacy declines, it will be imperative to develop new vaccines tailored to current variants of the virus.
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- 2024
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12. Trivalent mRNA vaccine-candidate against seasonal flu with cross-specific humoral immune response
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Elena P. Mazunina, Vladimir A. Gushchin, Denis A. Kleymenov, Andrei E. Siniavin, Elena I. Burtseva, Maksim M. Shmarov, Evgenya A. Mukasheva, Evgeniia N. Bykonia, Sofia R. Kozlova, Elina A. Evgrafova, Anastasia N. Zolotar, Elena V. Shidlovskaya, Elena S. Kirillova, Anastasiya S. Krepkaia, Evgeny V. Usachev, Nadezhda A. Kuznetsova, Igor A. Ivanov, Sergey E. Dmitriev, Roman A. Ivanov, Denis Y. Logunov, and Alexander L. Gintsburg
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seasonal influenza ,vaccine ,mRNA ,immunogenicity ,efficacy ,immune response ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Seasonal influenza remains a serious global health problem, leading to high mortality rates among the elderly and individuals with comorbidities. Vaccination is generally accepted as the most effective strategy for influenza prevention. While current influenza vaccines are effective, they still have limitations, including narrow specificity for certain serological variants, which may result in a mismatch between vaccine antigens and circulating strains. Additionally, the rapid variability of the virus poses challenges in providing extended protection beyond a single season. Therefore, mRNA technology is particularly promising for influenza prevention, as it enables the rapid development of multivalent vaccines and allows for quick updates of their antigenic composition. mRNA vaccines have already proven successful in preventing COVID-19 by eliciting rapid cellular and humoral immune responses. In this study, we present the development of a trivalent mRNA vaccine candidate, evaluate its immunogenicity using the hemagglutination inhibition assay, ELISA, and assess its efficacy in animals. We demonstrate the higher immunogenicity of the mRNA vaccine candidate compared to the inactivated split influenza vaccine and its enhanced ability to generate a cross-specific humoral immune response. These findings highlight the potential mRNA technology in overcoming current limitations of influenza vaccines and hold promise for ensuring greater efficacy in preventing seasonal influenza outbreaks.
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- 2024
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13. A full product/process numerical workflow based on Skin Model Shapes for tolerancing analysis of an assembly of composite parts
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MORO, T., DENIS, Y., SIDDIG, N., and GUENNEC, Y. LE
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- 2024
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14. Synthesis and biological evaluation of fluoroquinolones containing a pyridoxine derivatives moiety
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Shtyrlin, Nikita V., Kayumov, Airat R., Agafonova, Maria N., Garipov, Marsel R., Gatina, Alina E., Pugachev, Mikhail V., Bulatova, Elena S., Grishaev, Denis Y., Iksanova, Alfiya G., Khaziev, Rail M., Ganiev, Ilnur M., Aimaletdinov, Aleksandr M., Gnezdilov, Oleg I., and Shtyrlin, Yurii G.
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- 2023
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15. Mathematical model for investigation of alkylbenzenes sulfonation
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Elena N. Ivashkina, Irena O. Dolganova, Igor M. Dolganov, Anastasiya A. Zykova, and Denis Y. Sladkov
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Sulfonation ,alkylbenzene ,alkylbenzenesulfonic acid ,sulfuric anhydride ,mathematical model ,mass transfer ,Engineering geology. Rock mechanics. Soil mechanics. Underground construction ,TA703-712 - Abstract
The relevance. Lack of experimental data that allow developing a scientifically based method for calculating and designing film-type reactors, which are also used to produce alkylbenzenesulfonic acids. These acids, in their turn, are currently the main components of synthetic detergents. The issue of increasing reactor equipment efficiency can be most effectively solved using mathematical models built on a physical and chemical basis. The aim. Development of a mathematical model of alkylbenzenes sulfonation, taking into account a substance mass transfer from a gas phase to a liquid phase. Software implementation of the developed model, as well as the use of the developed mathematical model for studying the influence of the process parameters on its efficiency. Object. Alkylbenzenes sulfonation with sulfuric anhydride in a multitube film reactor. Methods. Mathematical modeling is used to perform all computational operations, a modern high-level general-purpose programming language with automatic memory management is used. The quantum-chemical methods for determining thermodynamic parameters of chemical reactions were used. Results. The paper considers the principles of constructing a mathematical model of sulfonation. The authors have developed the calculation program in the Python programming language and assessed the accuracy of description of a real process and the influence of the system technological parameters on a product yield and quality, taking into account a substance interfacial transfer. The system of practical recommendations for improving the alkylbenzenes sulfonation resource efficiency was developed. The mathematical model adequately describes the process. The calculated data are compared with the real data from the operating unit for alkylbenzenes sulfonation with sulfuric anhydride.
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- 2023
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16. Global data set of long-term summertime vertical temperature profiles in 153 lakes
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Pilla, Rachel M, Mette, Elizabeth M, Williamson, Craig E, Adamovich, Boris V, Adrian, Rita, Anneville, Orlane, Balseiro, Esteban, Ban, Syuhei, Chandra, Sudeep, Colom-Montero, William, Devlin, Shawn P, Dix, Margaret A, Dokulil, Martin T, Feldsine, Natalie A, Feuchtmayr, Heidrun, Fogarty, Natalie K, Gaiser, Evelyn E, Girdner, Scott F, González, María J, Hambright, K David, Hamilton, David P, Havens, Karl, Hessen, Dag O, Hetzenauer, Harald, Higgins, Scott N, Huttula, Timo H, Huuskonen, Hannu, Isles, Peter DF, Joehnk, Klaus D, Keller, Wendel Bill, Klug, Jen, Knoll, Lesley B, Korhonen, Johanna, Korovchinsky, Nikolai M, Köster, Oliver, Kraemer, Benjamin M, Leavitt, Peter R, Leoni, Barbara, Lepori, Fabio, Lepskaya, Ekaterina V, Lottig, Noah R, Luger, Martin S, Maberly, Stephen C, MacIntyre, Sally, McBride, Chris, McIntyre, Peter, Melles, Stephanie J, Modenutti, Beatriz, Müller-Navarra, Dörthe C, Pacholski, Laura, Paterson, Andrew M, Pierson, Don C, Pislegina, Helen V, Plisnier, Pierre-Denis, Richardson, David C, Rimmer, Alon, Rogora, Michela, Rogozin, Denis Y, Rusak, James A, Rusanovskaya, Olga O, Sadro, Steve, Salmaso, Nico, Saros, Jasmine E, Sarvala, Jouko, Saulnier-Talbot, Émilie, Schindler, Daniel E, Shimaraeva, Svetlana V, Silow, Eugene A, Sitoki, Lewis M, Sommaruga, Ruben, Straile, Dietmar, Strock, Kristin E, Swain, Hilary, Tallant, Jason M, Thiery, Wim, Timofeyev, Maxim A, Tolomeev, Alexander P, Tominaga, Koji, Vanni, Michael J, Verburg, Piet, Vinebrooke, Rolf D, Wanzenböck, Josef, Weathers, Kathleen, Weyhenmeyer, Gesa A, Zadereev, Egor S, and Zhukova, Tatyana V
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Climate change and other anthropogenic stressors have led to long-term changes in the thermal structure, including surface temperatures, deepwater temperatures, and vertical thermal gradients, in many lakes around the world. Though many studies highlight warming of surface water temperatures in lakes worldwide, less is known about long-term trends in full vertical thermal structure and deepwater temperatures, which have been changing less consistently in both direction and magnitude. Here, we present a globally-expansive data set of summertime in-situ vertical temperature profiles from 153 lakes, with one time series beginning as early as 1894. We also compiled lake geographic, morphometric, and water quality variables that can influence vertical thermal structure through a variety of potential mechanisms in these lakes. These long-term time series of vertical temperature profiles and corresponding lake characteristics serve as valuable data to help understand changes and drivers of lake thermal structure in a time of rapid global and ecological change.
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- 2021
17. Long-chain alkenones in the lake sediments of North-Minusinsk Valley (southern Siberia): implications for paleoclimate reconstructions
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Bulkhin, Alexander O., Zykov, Vladimir V., Marchenko, Dmitry N., Kabilov, Marsel R., Baturina, Olga A., Boyandin, Anatoly N., Anishchenko, Olesya V., and Rogozin, Denis Y.
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- 2023
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18. Immunogenicity and protectivity of intranasally delivered vector-based heterologous prime-boost COVID-19 vaccine Sputnik V in mice and non-human primates
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Amir I. Tukhvatulin, Ilya V. Gordeychuk, Inna V. Dolzhikova, Alina S. Dzharullaeva, Marina E. Krasina, Ekaterina O. Bayurova, Daria M. Grousova, Anna V. Kovyrshina, Alla S. Kondrashova, Daria V. Avdoshina, Stanislav A. Gulyaev, Tatiana V. Gulyaeva, Andrey V. Moroz, Viktoria V. Illarionova, Ilya D. Zorkov, Anna A. Iliukhina, Artem Y. Shelkov, Andrei G. Botikov, Alina S. Erokhova, Dmitry V. Shcheblyakov, Ilias B. Esmagambetov, Olga V. Zubkova, Elisaveta A. Tokarskaya, Daria M. Savina, Yulia R. Vereveyko, Anastasiya S. Ungur, Boris S. Naroditsky, Aydar A. Ishmukhametov, Denis Y. Logunov, and Alexander L. Gintsburg
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Sputnik V ,Gam-COVID-Vac ,intranasal vaccine ,SARS-CoV-2 ,COVID-19 ,Infectious and parasitic diseases ,RC109-216 ,Microbiology ,QR1-502 - Abstract
Although unprecedented efforts aiming to stop the COVID-19 pandemic have been made over the past two years, SARSCoV-2 virus still continues to cause intolerable health and economical losses. Vaccines are considered the most effective way to prevent infectious diseases, which has been reaffirmed for COVID-19. However, in the context of the continuing virus spread because of insufficient vaccination coverage and emergence of new variants of concern, there is a high demand for vaccination strategy amendment. The ability to elicit protective immunity at the entry gates of infection provided by mucosal vaccination is key to block virus infection and transmission. Therefore, these mucosal vaccines are believed to be a “silver bullet” that could bring the pandemic to an end. Here, we demonstrate that the intranasally delivered Gam-COVID-Vac (Sputnik V) vaccine induced a robust (no less than 180 days) systemic and local immune response in mice. High immunogenic properties of the vaccine were verified in non-human primates (common marmosets) by marked IgG and neutralizing antibody (NtAb) production in blood serum, antigen-specific Tcell proliferation and cytokine release of peripheral blood mononuclear cells accompanied by formation of IgA antibodies in the nasal mucosa. We also demonstrate that Sputnik V vaccine can provide sterilizing immunity in K18-hACE2 transgenic mice exposed to experimental lethal SARS-CoV-2 infection protecting them against severe lung immunopathology and mortality. We believe that intranasal Sputnik V vaccine is a promising novel needle-free mucosal vaccine candidate for primary immunization as well as for revaccination and is worth further clinical investigation.
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- 2022
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19. Real-world clinical effectiveness of Tixagevimab/Cilgavimab and Regdanvimab monoclonal antibodies for COVID-19 treatment in Omicron variant-dominant period
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Daria S. Fomina, Marina S. Lebedkina, Anna A. Iliukhina, Anna V. Kovyrshina, Artem Y. Shelkov, Sergey S. Andreev, Anton A. Chernov, Inna V. Dolzhikova, Tatyana S. Kruglova, Gerelma V. Andrenova, Amir I. Tukhvatulin, Dmitry V. Shcheblyakov, Alexander V. Karaulov, Maryana A. Lysenko, Denis Y. Logunov, and Alexander L. Gintsburg
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neutralizing antibodies ,Tixagevimab/Cilgavimab ,Regdanvimab ,COVID-19 ,omicron ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Several virus-neutralizing monoclonal antibodies (mAbs) have become new tools in the treatment of the coronavirus disease (COVID-19), but their effectiveness against the rapidly mutating virus is questionable. The present study investigated the effectiveness of Tixagevimab/Cilgavimab and Regdanvimab for mild and moderate COVID-19 treatment in real-world clinical practice during the Omicron variant-dominant period. Patients with known risk factors for disease progression and increasing disease severity were enrolled in the study within the first 7 days of symptom onset. Seventy-seven patients were divided into four groups: first 15 patients received 300 mg Tixagevimab/Cilgavimab intravenously (IV) and 23 patients got the same drug 300 mg intramuscularly (IM), the next 15 patients was on the same combination in dose of 600 mg IV, and 24 patients were on Regdanvimab at a dose of 40 mg/kg IV. By Day 4, 100% of Tixagevimab/Cilgavimab IV patients showed negative polymerase chain reaction results for SARS-CoV-2 Ribonucleic acid (RNA) regardless of the mAbs dose while in the Regdanvimab group 29% of the patients were positive for SARS-CoV-2 virus RNA. The testing for virus neutralizing antibodies (nAbs) to various Omicron sublineages (BA.1, BA.2, and BA.5) showed that an increase in nAb levels was detected in blood serum immediately after the drug administration only in Tixagevimab/Cilgavimab 300 mg and 600 mg IV groups. In the group of intravenous Regdanvimab, a significant increase in the level of nAbs to the Wuhan variant was detected immediately after the drug administration, while no increase in nAbs to different Omicron sublineages was observed.Clinical trial registrationhttps://clinicaltrials.gov/, identifier NCT05982704.
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- 2023
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20. Safety and immunogenicity of rAd26 and rAd5 vector-based heterologous prime-boost COVID-19 vaccine against SARS-CoV-2 in healthy adolescents: an open-label, non-randomized, multicenter, phase 1/2, dose-escalation study
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Amir I. Tukhvatulin, Inna V. Dolzhikova, Alina S. Dzharullaeva, Daria M. Grousova, Anna V. Kovyrshina, Olga V. Zubkova, Ilya D. Zorkov, Anna A. Iliukhina, Artem Y. Shelkov, Alina S. Erokhova, Olga Popova, Tatiana A. Ozharovskaia, Denis I. Zrelkin, Fatima M. Izhaeva, Dmitry V. Shcheblyakov, Ilias B. Esmagambetov, Elisaveta A. Tokarskaya, Natalia A. Nikitenko, Nadezhda L. Lubenets, Elizaveta A. Khadorich, Vladimir A. Gushchin, Svetlana N. Borzakova, Anna V. Vlasova, Ismail M. Osmanov, Valerii V. Gorev, Boris S. Naroditsky, Denis Y. Logunov, and Alexander L. Gintsburg
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Sputnik M ,Sputnik V ,Gam-COVID-Vac ,SARS-CoV-2 ,COVID-19 ,Immunologic diseases. Allergy ,RC581-607 - Abstract
To protect young individuals against SARS-CoV-2 infection, we conducted an open-label, prospective, non-randomised dose-escalation Phase 1/2 clinical trial to evaluate the immunogenicity and safety of the prime-boost “Sputnik V” vaccine administered at 1/10 and 1/5 doses to adolescents aged 12–17 years. The study began with the vaccination of the older cohort (15-to-17-year-old participants) with the lower (1/10) dose of vaccine and then expanded to the whole group (12-to-17-year-old participants). Next, 1/5 dose was used according to the same scheme. Both doses were well tolerated by all age groups. No serious or severe adverse events were detected. Most of the solicited adverse reactions were mild. No significant differences in total frequencies of adverse events were registered between low and high doses in age-pooled groups (69.6% versus 66.7%). In contrast, the 1/5 dose induced significantly higher humoral and T cell-mediated immune responses than the 1/10 dose. The 1/5 vaccine dose elicited higher antigen-binding (both S and RBD-specific) as well as virus-neutralising antibody titres at the maximum of response (day 42), also resulting in a statistically significant difference at a distanced timepoint (day 180) compared to the 1/10 vaccine dose. Higher dose resulted in increased cross-neutralization of Delta and Omicron variants.;Clinical Trial RegistrationClinicalTrials.gov, NCT04954092, LP-007632.
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- 2023
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21. Major Role of S-Glycoprotein in Providing Immunogenicity and Protective Immunity in mRNA Lipid Nanoparticle Vaccines Based on SARS-CoV-2 Structural Proteins
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Evgeniia N. Bykonia, Denis A. Kleymenov, Vladimir A. Gushchin, Andrei E. Siniavin, Elena P. Mazunina, Sofia R. Kozlova, Anastasia N. Zolotar, Evgeny V. Usachev, Nadezhda A. Kuznetsova, Elena V. Shidlovskaya, Andrei A. Pochtovyi, Daria D. Kustova, Igor A. Ivanov, Sergey E. Dmitriev, Roman A. Ivanov, Denis Y. Logunov, and Alexander L. Gintsburg
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SARS-CoV-2 ,mRNA vaccine ,lipid nanoparticles ,immunogenicity ,efficacy ,Medicine - Abstract
SARS-CoV-2 variants have evolved over time in recent years, demonstrating immune evasion of vaccine-induced neutralizing antibodies directed against the original S protein. Updated S-targeted vaccines provide a high level of protection against circulating variants of SARS-CoV-2, but this protection declines over time due to ongoing virus evolution. To achieve a broader protection, novel vaccine candidates involving additional antigens with low mutation rates are currently needed. Based on our recently studied mRNA lipid nanoparticle (mRNA-LNP) platform, we have generated mRNA-LNP encoding SARS-CoV-2 structural proteins M, N, S from different virus variants and studied their immunogenicity separately or in combination in vivo. As a result, all mRNA-LNP vaccine compositions encoding the S and N proteins induced excellent titers of RBD- and N-specific binding antibodies. The T cell responses were mainly specific CD4+ T cell lymphocytes producing IL-2 and TNF-alpha. mRNA-LNP encoding the M protein did not show a high immunogenicity. High neutralizing activity was detected in the sera of mice vaccinated with mRNA-LNP encoding S protein (alone or in combinations) against closely related strains, but was undetectable or significantly lower against an evolutionarily distant variant. Our data showed that the addition of mRNAs encoding S and M antigens to mRNA-N in the vaccine composition enhanced the immunogenicity of mRNA-N and induced a more robust immune response to the N protein. Based on our results, we suggested that the S protein plays a key role in enhancing the immune response to the N protein when they are both encoded in the mRNA-LNP vaccine.
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- 2024
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22. Digitalization in Remote Learning
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Lapygin, Yuri N., Lapygin, Denis Y., Boltunov, Sergey A., Andryashina, Natalia S., Kuznetsova, Svetlana N., Maclean, Rupert, Series Editor, Symaco, Lorraine Pe, Series Editor, Adamson, Bob, Editorial Board Member, Baker, Robyn, Editorial Board Member, Crossley, Michael, Editorial Board Member, Jagannathan, Shanti, Editorial Board Member, Kitamura, Yuto, Editorial Board Member, Power, Colin, Editorial Board Member, Thaman, Konai Helu, Editorial Board Member, Bray, Mark, Advisory Editor, Cheng, Yin Cheong, Advisory Editor, Fien, John, Advisory Editor, Huong, Pham Lan, Advisory Editor, Lee, Chong-Jae, Advisory Editor, Mar, Naing Yee, Advisory Editor, Masters, Geoff, Advisory Editor, Pavlova, Margarita, Advisory Editor, Walsh, Max, Advisory Editor, de Zoysa, Uchita, Advisory Editor, Popkova, Elena G., editor, and Sergi, Bruno S., editor
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- 2022
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23. Cryptophytes of Lake Shira (Khakassia, Russia): explosive growth during breakdown of meromixis
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Barkhatov, Yuri V., Khromechek, Elena B., Zykov, Vladimir V., and Rogozin, Denis Y.
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- 2022
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24. Photonic spin Hall effect mediated by bianisotropy
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Zhirihin, Dmitry V., Li, Sergey V., Sokolov, Denis Y., Slobozhanyuk, Alexey P., Gorlach, Maxim A., and Khanikaev, Alexander B.
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Physics - Optics - Abstract
Coupling of electric and magnetic responses of a scatterer known as bianisotropy enables rich physics and unique optical phenomena, including asymmetric absorption or reflection, one-way transparency, and photonic topological phases. Here we demonstrate yet another feature stemming from bianisotropic response, namely, polarization-dependent scattering of light by bianisotropic dielectric meta-atom with broken mirror symmetry, which yields a photonic analogue of spin Hall effect. Based on a simple dipole model, we explain the origin of the effect confirming our conclusions by experimental observation of photonic spin Hall effect both for a single meta-atom and for an array of them.
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- 2018
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25. Suppressing Formation of Zn─Mn─O Phases by In Situ Ti Decoration of MnO2 for Long Lifespan MnO2‐Zn Battery.
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Duan, Qiaohui, Zheng, Yiyi, Zhou, Yu, Dong, Shuyu, Ku, Calvin, Sit, Patrick H.‐L., and Yu, Denis Y. W.
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- 2024
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26. Immunogenicity and Efficacy of Combined mRNA Vaccine Against Influenza and SARS-CoV-2 in Mice Animal Models.
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Mazunina, Elena P., Gushchin, Vladimir A., Bykonia, Evgeniia N., Kleymenov, Denis A., Siniavin, Andrei E., Kozlova, Sofia R., Mukasheva, Evgenya A., Shidlovskaya, Elena V., Kuznetsova, Nadezhda A., Usachev, Evgeny V., Zlobin, Vladimir I., Burtseva, Elena I., Ivanov, Roman A., Logunov, Denis Y., and Gintsburg, Alexander L.
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COMBINED vaccines ,INFLUENZA A virus, H1N1 subtype ,VACCINE effectiveness ,VACCINE immunogenicity ,SEASONAL influenza - Abstract
Background. The combined or multivalent vaccines are actively used in pediatric practice and offer a series of advantages, including a reduced number of injections and visits to the doctor, simplicity of the vaccination schedule and minimization of side effects, easier vaccine monitoring and storage, and lower vaccination costs. The practice of widespread use of the combined vaccines has shown the potential to increase vaccination coverage against single infections. The mRNA platform has been shown to be effective against the COVID-19 pandemic and enables the development of combined vaccines. There are currently no mRNA-based combined vaccines approved for use in humans. Some studies have shown that different mRNA components in a vaccine can interact to increase or decrease the immunogenicity and efficacy of the combined vaccine. Objectives. In the present study, we investigated the possibility of combining the mRNA vaccines, encoding seasonal influenza and SARS-CoV-2 antigens. In our previous works, both vaccine candidates have shown excellent immunogenicity and efficacy profiles in mice. Methods. The mRNA-LNPs were prepared by microfluidic mixing, immunogenicity in mice was assessed by hemagglutination inhibition assay, enzyme-linked immunoassay and virus neutralization assay. Immunological efficacy was assessed in a mouse viral challenge model. Results. In this work, we demonstrated that the individual mRNA components of the combined vaccine did not affect the immunogenicity level of each other. The combined vaccine demonstrated excellent protective efficacy, providing a 100% survival rate when mice were infected with the H1N1 influenza virus and reducing the viral load in the lungs. Four days after the challenge with SARS-CoV-2 EG.5.1.1., no viable virus and low levels of detectable viral RNA were observed in the lungs of vaccinated mice. Conclusions. The combination does not lead to mutual interference between the individual vaccines. We believe that such a combined mRNA-based vaccine could be a good alternative to separated human vaccinations for the prevention of COVID-19 and influenza. [ABSTRACT FROM AUTHOR]
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- 2024
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27. Synthesis and Antiviral Activity of Novel β-D-N4-Hydroxycytidine Ester Prodrugs as Potential Compounds for the Treatment of SARS-CoV-2 and Other Human Coronaviruses
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Elizaveta S. Darnotuk, Andrei E. Siniavin, Natal’ya S. Shastina, Sergey I. Luyksaar, Anna M. Inshakova, Natalia E. Bondareva, Sergey A. Zolotov, Nadezhda L. Lubenec, Anna B. Sheremet, Denis Y. Logunov, Nailya A. Zigangirova, Vladimir A. Gushchin, and Alexander L. Gintsburg
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antivirals ,SARS-CoV-2 ,N4-hydroxycytidine ,COVID-19 ,prodrug ,ester derivatives ,Medicine ,Pharmacy and materia medica ,RS1-441 - Abstract
The spread of COVID-19 infection continues due to the emergence of multiple transmissible and immune-evasive variants of the SARS-CoV-2 virus. Although various vaccines have been developed and several drugs have been approved for the treatment of COVID-19, the development of new drugs to combat COVID-19 is still necessary. In this work, new 5′-O-ester derivatives of N4-hydroxycytidine based on carboxylic acids were developed and synthesized by Steglich esterification. The antiviral activity of the compounds was assessed in vitro—inhibiting the cytopathic effect of HCoV-229E, and three variants of SARS-CoV-2, on huh-7 and Vero E6 cells. Data have shown that most synthesized derivatives exhibit high activity against coronaviruses. In addition, the relationship between the chemical structure of the compounds and their antiviral effect has been established. The obtained results show that the most active compound was conjugate SN_22 based on 3-methyl phenoxyacetic acid. The results of this study indicate the potential advantage of the chemical strategies used to modify NHC as a promising avenue to be explored in vivo, which could lead to the development of drugs with improved pharmacological properties that potently inhibit SARS-CoV-2.
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- 2023
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28. Sputnik V protection from COVID-19 in people living with HIV under antiretroviral therapy
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Gushchin, Vladimir A., Tsyganova, Elena V., Ogarkova, Darya A., Adgamov, Ruslan R., Shcheblyakov, Dmitry V., Glukhoedova, Nataliia V., Zhilenkova, Aleksandra S., Kolotii, Alexey G., Zaitsev, Roman D., Logunov, Denis Y., Gintsburg, Alexander L., and Mazus, Alexey I.
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- 2022
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29. rAAV expressing recombinant antibody for emergency prevention and long-term prophylaxis of COVID-19
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Ilias B. Esmagambetov, Ekaterina I. Ryabova, Artem A. Derkaev, Dmitry V. Shcheblyakov, Inna V. Dolzhikova, Irina A. Favorskaya, Daria M. Grousova, Mikhail A. Dovgiy, Vladimir V. Prokofiev, Andrey I. Gosudarev, Daria V. Byrikhina, Ilia D. Zorkov, Anna A. Iliukhina, Anna V. Kovyrshina, Artem Y. Shelkov, Boris S. Naroditsky, Denis Y. Logunov, and Alexander L. Gintsburg
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recombinant adeno-associated viral vector (rAAV) ,single-domain antibodies ,VHH ,COVID-19 ,SARS-CoV-2 ,passive immunization ,Immunologic diseases. Allergy ,RC581-607 - Abstract
IntroductionNumerous agents for prophylaxis of SARS-CoV-2-induced diseases are currently registered for the clinical use. Formation of the immunity happens within several weeks following vaccine administration which is their key disadvantage. In contrast, drugs based on monoclonal antibodies, enable rapid passive immunization and therefore can be used for emergency pre- and post-exposure prophylaxis of COVID-19. However rapid elimination of antibody-based drugs from the circulation limits their usage for prolonged pre-exposure prophylaxis.MethodsIn current work we developed a recombinant adeno-associated viral vector (rAAV), expressing a SARS-CoV-2 spike receptor-binding domain (RBD)-specific antibody P2C5 fused with a human IgG1 Fc fragment (P2C5-Fc) using methods of molecular biotechnology and bioprocessing.Results and discussionsA P2C5-Fc antibody expressed by a proposed rAAV (rAAV-P2C5-Fc) was shown to circulate within more than 300 days in blood of transduced mice and protect animals from lethal SARS-CoV-2 virus (B.1.1.1 and Omicron BA.5 variants) lethal dose of 105 TCID50. In addition, rAAV-P2C5-Fc demonstrated 100% protective activity as emergency prevention and long-term prophylaxis, respectively. It was also demonstrated that high titers of neutralizing antibodies to the SARS-CoV-2 virus were detected in the blood serum of animals that received rAAV-P2C5-Fc for more than 10 months from the moment of administration.Our data therefore indicate applicability of an rAAV for passive immunization and induction of a rapid long-term protection against various SARS-CoV-2 variants.
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- 2023
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30. Electrocatalytic enhancement mechanism of cobalt single atoms anchored on different MXene substrates in oxygen and hydrogen evolution reactions
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Xin Zhao, Xuerong Zheng, Qi Lu, Ying Li, Fengping Xiao, Bing Tang, Shixun Wang, Denis Y. W. Yu, and Andrey L. Rogach
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Co single‐atom catalyst ,hydrogen evolution ,MXene substrates ,oxygen evolution ,water splitting ,Renewable energy sources ,TJ807-830 ,Environmental sciences ,GE1-350 - Abstract
Abstract Decorating single atoms of transition metals on MXenes to enhance the electrocatalytic properties of the resulting composites is a useful strategy for developing efficient electrocatalysts, and the mechanisms behind this enhancement are under intense scrutiny. Herein, we anchored Co single atoms onto several commonly used MXene substrates (V2CTx, Nb2CTx and Ti3C2Tx) and systematically studied the electrocatalytic behavior and the mechanisms of oxygen and hydrogen evolution reactions (OER and HER, respectively) of the resulting composites. Co@V2CTx composite displays an OER overpotential of 242 mV and an HER overpotential of 35 mV at 10 mA cm−2 in 1.0 M KOH electrolyte, which is much lower than for Co@Nb2CTx and Co@Ti3C2Tx, making it comparable to the commercial noble metal Pt/C and RuO2/C electrocatalysts. The experimental and theoretical results point out that the enhanced bifunctional catalytic performance of Co@V2CTx benefits from the stronger hybridization between Co 3d and surface terminated O 2p orbitals which optimized the electronic structure of Co single atoms in the composite. This, in turn, results in lowering the OER and HER energy barriers and acceleration of the catalytic kinetics in case of the Co@V2CTx composite. The advantage of Co@V2CTx was further validated by its high overall water splitting performance (1.60 V to deliver 10 mA cm−2). Our study sheds light on the origins of the catalytic activity of single transition metals atoms on MXene substrates, and provides guidelines for designing efficient bifunctional MXene‐based electrocatalysts.
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- 2023
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31. Single-domain antibody delivery using an mRNA platform protects against lethal doses of botulinum neurotoxin A
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Eugenia A. Panova, Denis A. Kleymenov, Dmitry V. Shcheblyakov, Evgeniia N. Bykonia, Elena P. Mazunina, Alina S. Dzharullaeva, Anastasia N. Zolotar, Artem A. Derkaev, Ilias B. Esmagambetov, Ivan I. Sorokin, Evgeny V. Usachev, Anatoly N. Noskov, Igor A. Ivanov, Timofei S. Zatsepin, Sergey E. Dmitriev, Vladimir A. Gushchin, Boris S. Naroditsky, Denis Y. Logunov, and Alexander L. Gintsburg
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single-domain antibody ,mRNA platform ,BoNT/A inhibitor ,VHH-Fc antibody ,Clostridium botulinum ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Single-domain antibodies (sdAbs, VHHs, or nanobodies) are a promising tool for the treatment of both infectious and somatic diseases. Their small size greatly simplifies any genetic engineering manipulations. Such antibodies have the ability to bind hard-to-reach antigenic epitopes through long parts of the variable chains, the third complementarity-determining regions (CDR3s). VHH fusion with the canonical immunoglobulin Fc fragment allows the Fc-fusion single-domain antibodies (VHH-Fc) to significantly increase their neutralizing activity and serum half-life. Previously we have developed and characterized VHH-Fc specific to botulinum neurotoxin A (BoNT/A), that showed a 1000-fold higher protective activity than monomeric form when challenged with five times the lethal dose (5 LD50) of BoNT/A. During the COVID-19 pandemic, mRNA vaccines based on lipid nanoparticles (LNP) as a delivery system have become an important translational technology that has significantly accelerated the clinical introduction of mRNA platforms. We have developed an mRNA platform that provides long-term expression after both intramuscular and intravenous application. The platform has been extensively characterized using firefly luciferase (Fluc) as a reporter. An intramuscular administration of LNP-mRNA encoding VHH-Fc antibody made it possible to achieve its rapid expression in mice and resulted in 100% protection when challenged with up to 100 LD50 of BoNT/A. The presented approach for the delivery of sdAbs using mRNA technology greatly simplifies drug development for antibody therapy and can be used for emergency prophylaxis.
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- 2023
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32. An open, non-randomised, phase 1/2 trial on the safety, tolerability, and immunogenicity of single-dose vaccine “Sputnik Light” for prevention of coronavirus infection in healthy adults
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Tukhvatulin, Amir I., Dolzhikova, Inna V., Shcheblyakov, Dmitry V., Zubkova, Olga V., Dzharullaeva, Alina S., Kovyrshina, Anna V., Lubenets, Nadezhda L., Grousova, Daria M., Erokhova, Alina S., Botikov, Andrei G., Izhaeva, Fatima M., Popova, Olga, Ozharovskaia, Tatiana A., Esmagambetov, Ilias B., Favorskaya, Irina A., Zrelkin, Denis I., Voronina, Daria V., Shcherbinin, Dmitry N., Semikhin, Alexander S., Simakova, Yana V., Tokarskaya, Elizaveta A., Shmarov, Maksim M., Nikitenko, Natalia A., Gushchin, Vladimir A., Smolyarchuk, Elena A., Zubkova, Tatiana G., Zakharov, Konstantin A., Vasilyuk, Vasiliy B., Borisevich, Sergei V., Naroditsky, Boris S., Logunov, Denis Y., and Gintsburg, Alexander L.
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- 2021
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33. Facile synthesis of hollow Cu3P for sodium-ion batteries anode
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Zhang, Jiao-Long, Li, Chao-Lin, Wang, Wen-Hui, and Yu, Denis Y. W.
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- 2021
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34. Estimation of anti-orthopoxvirus immunity in Moscow residents and potential risks of spreading Monkeypox virus
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Vladimir A. Gushchin, Darya A. Ogarkova, Inna V. Dolzhikova, Olga V. Zubkova, Igor V. Grigoriev, Andrei A. Pochtovyi, Anna A. Iliukhina, Tatiana A. Ozharovskaia, Nadezhda A. Kuznetsova, Daria D. Kustova, Artem Y. Shelkov, Denis I. Zrelkin, Alina S. Odintsova, Daria M. Grousova, Vladislav Y. Kan, Sona A. Davtyan, Andrei E. Siniavin, Elizaveta D. Belyaeva, Andrei G. Botikov, Arina A. Bessonova, Lyudmila A. Vasilchenko, Daria V. Vasina, Denis A. Kleymenov, Egor A. Slutskiy, Artem P. Tkachuk, Olga A. Burgasova, Svetlana Y. Loginova, Evgeny V. Rozhdestvensky, Dmitry V. Shcheblyakov, Alexander N. Tsibin, Andrey G. Komarov, Vladimir I. Zlobin, Sergei V. Borisevich, Boris S. Naroditsky, Denis Y. Logunov, and Alexander L. Gintsburg
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monkeypox virus (MPXV) ,orthopoxvirus ,vaccinia virus (VACV) ,immunity ,neutralizing antibody titers (NAT) ,Immunologic diseases. Allergy ,RC581-607 - Abstract
WHO has declared the outbreak of monkeypox as a public health emergency of international concern. In less than three months, monkeypox was detected in more than 30 000 people and spread to more than 80 countries around the world. It is believed that the immunity formed to smallpox vaccine can protect from monkeypox infection with high efficiency. The widespread use of Vaccinia virus has not been carried out since the 1980s, which raises the question of the level of residual immunity among the population and the identification of groups requiring priority vaccination. We conducted a cross-sectional serological study of remaining immunity among Moscow residents. To do this, a collection of blood serum samples of age group over 30 years old was formed, an in-house ELISA test system was developed, and a virus neutralization protocol was set up. Serum samples were examined for the presence of IgG antibodies against Vaccinia virus (n=2908), as well as for the ability to neutralize plaque formation with a Vaccinia virus MNIIVP-10 strain (n=299). The results indicate the presence of neutralizing antibody titer of 1/20 or more in 33.3 to 53.2% of people older than 45 years. Among people 30-45 years old who probably have not been vaccinated, the proportion with virus neutralizing antibodies ranged from 3.2 to 6.7%. Despite the higher level of antibodies in age group older than 66 years, the proportion of positive samples in this group was slightly lower than in people aged 46-65 years. The results indicate the priority of vaccination in groups younger than 45, and possibly older than 66 years to ensure the protection of the population in case of spread of monkeypox among Moscow residents. The herd immunity level needed to stop the circulation of the virus should be at least 50.25 – 65.28%.
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- 2022
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35. A dissipative model for deep-drawing simulations: Elastic springback prediction and incremental forming strategies
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Denis, Y., Hamila, N., Itskov, M., Guzman-Maldonado, E., and Morestin, F.
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- 2021
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36. In Vitro Efficacy of Antivirals and Monoclonal Antibodies against SARS-CoV-2 Omicron Lineages XBB.1.9.1, XBB.1.9.3, XBB.1.5, XBB.1.16, XBB.2.4, BQ.1.1.45, CH.1.1, and CL.1
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Andrei A. Pochtovyi, Daria D. Kustova, Andrei E. Siniavin, Inna V. Dolzhikova, Elena V. Shidlovskaya, Olga G. Shpakova, Lyudmila A. Vasilchenko, Arina A. Glavatskaya, Nadezhda A. Kuznetsova, Anna A. Iliukhina, Artem Y. Shelkov, Olesia M. Grinkevich, Andrei G. Komarov, Denis Y. Logunov, Vladimir A. Gushchin, and Alexander L. Gintsburg
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SARS-CoV-2 ,therapies ,mAb ,antiviral drugs ,drug resistance ,Medicine - Abstract
The spread of COVID-19 continues, expressed by periodic wave-like increases in morbidity and mortality. The reason for the periodic increases in morbidity is the emergence and spread of novel genetic variants of SARS-CoV-2. A decrease in the efficacy of monoclonal antibodies (mAbs) has been reported, especially against Omicron subvariants. There have been reports of a decrease in the efficacy of specific antiviral drugs as a result of mutations in the genes of non-structural proteins. This indicates the urgent need for practical healthcare to constantly monitor pathogen variability and its effect on the efficacy of preventive and therapeutic drugs. As part of this study, we report the results of the continuous monitoring of COVID-19 in Moscow using genetic and virological methods. As a result of this monitoring, we determined the dominant genetic variants and identified the variants that are most widespread, not only in Moscow, but also in other countries. A collection of viruses from more than 500 SARS-CoV-2 isolates has been obtained and characterized. The genetic lines XBB.1.9.1, XBB.1.9.3, XBB.1.5, XBB.1.16, XBB.2.4, BQ.1.1.45, CH.1.1, and CL.1, representing the greatest concern, were identified among the dominant variants. We studied the in vitro efficacy of mAbs Tixagevimab + Cilgavimab (Evusheld), Sotrovimab, Regdanvimab, Casirivimab + Imdevimab (Ronapreve), and Bebtelovimab, as well as the specific antiviral drugs Remdesivir, Molnupiravir, and Nirmatrelvir, against these genetic lines. At the current stage of the COVID-19 pandemic, the use of mAbs developed against early SARS-CoV-2 variants has little prospect. Specific antiviral drugs retain their activity, but further monitoring is needed to assess the risk of their efficacy being reduced and adjust recommendations for their use.
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- 2023
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37. Global data set of long-term summertime vertical temperature profiles in 153 lakes
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Rachel M. Pilla, Elizabeth M. Mette, Craig E. Williamson, Boris V. Adamovich, Rita Adrian, Orlane Anneville, Esteban Balseiro, Syuhei Ban, Sudeep Chandra, William Colom-Montero, Shawn P. Devlin, Margaret A. Dix, Martin T. Dokulil, Natalie A. Feldsine, Heidrun Feuchtmayr, Natalie K. Fogarty, Evelyn E. Gaiser, Scott F. Girdner, María J. González, K. David Hambright, David P. Hamilton, Karl Havens, Dag O. Hessen, Harald Hetzenauer, Scott N. Higgins, Timo H. Huttula, Hannu Huuskonen, Peter D. F. Isles, Klaus D. Joehnk, Wendel Bill Keller, Jen Klug, Lesley B. Knoll, Johanna Korhonen, Nikolai M. Korovchinsky, Oliver Köster, Benjamin M. Kraemer, Peter R. Leavitt, Barbara Leoni, Fabio Lepori, Ekaterina V. Lepskaya, Noah R. Lottig, Martin S. Luger, Stephen C. Maberly, Sally MacIntyre, Chris McBride, Peter McIntyre, Stephanie J. Melles, Beatriz Modenutti, Dörthe C. Müller-Navarra, Laura Pacholski, Andrew M. Paterson, Don C. Pierson, Helen V. Pislegina, Pierre-Denis Plisnier, David C. Richardson, Alon Rimmer, Michela Rogora, Denis Y. Rogozin, James A. Rusak, Olga O. Rusanovskaya, Steve Sadro, Nico Salmaso, Jasmine E. Saros, Jouko Sarvala, Émilie Saulnier-Talbot, Daniel E. Schindler, Svetlana V. Shimaraeva, Eugene A. Silow, Lewis M. Sitoki, Ruben Sommaruga, Dietmar Straile, Kristin E. Strock, Hilary Swain, Jason M. Tallant, Wim Thiery, Maxim A. Timofeyev, Alexander P. Tolomeev, Koji Tominaga, Michael J. Vanni, Piet Verburg, Rolf D. Vinebrooke, Josef Wanzenböck, Kathleen Weathers, Gesa A. Weyhenmeyer, Egor S. Zadereev, and Tatyana V. Zhukova
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Science - Abstract
Measurement(s) temperature of water • temperature profile Technology Type(s) digital curation Factor Type(s) lake location • temporal interval Sample Characteristic - Environment lake • reservoir Sample Characteristic - Location global Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.14619009
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- 2021
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38. Safety and efficacy of an rAd26 and rAd5 vector-based heterologous prime-boost COVID-19 vaccine: an interim analysis of a randomised controlled phase 3 trial in Russia
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Logunov, Denis Y, Dolzhikova, Inna V, Shcheblyakov, Dmitry V, Tukhvatulin, Amir I, Zubkova, Olga V, Dzharullaeva, Alina S, Kovyrshina, Anna V, Lubenets, Nadezhda L, Grousova, Daria M, Erokhova, Alina S, Botikov, Andrei G, Izhaeva, Fatima M, Popova, Olga, Ozharovskaya, Tatiana A, Esmagambetov, Ilias B, Favorskaya, Irina A, Zrelkin, Denis I, Voronina, Daria V, Shcherbinin, Dmitry N, Semikhin, Alexander S, Simakova, Yana V, Tokarskaya, Elizaveta A, Egorova, Daria A, Shmarov, Maksim M, Nikitenko, Natalia A, Gushchin, Vladimir A, Smolyarchuk, Elena A, Zyryanov, Sergey K, Borisevich, Sergei V, Naroditsky, Boris S, and Gintsburg, Alexander L
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- 2021
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39. Design, synthesis, antibacterial activity and toxicity of novel quaternary ammonium compounds based on pyridoxine and fatty acids
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Sapozhnikov, Sergey V., Sabirova, Alina E., Shtyrlin, Nikita V., Druk, Anastasia Y., Agafonova, Mariya N., Chirkova, Milana N., Kazakova, Renata R., Grishaev, Denis Y., Nikishova, Tatyana V., Krylova, Elena S., Nikitina, Elena V., Kayumov, Airat R., and Shtyrlin, Yurii G.
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- 2021
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40. rAAV expressing recombinant neutralizing antibody for the botulinum neurotoxin type A prophylaxis
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Artem A. Derkaev, Ekaterina I. Ryabova, Ilias B. Esmagambetov, Dmitry V. Shcheblyakov, Svetlana A. Godakova, Irina D. Vinogradova, Anatoly N. Noskov, Denis Y. Logunov, Boris S. Naroditsky, and Alexander L. Gintsburg
- Subjects
adeno-associated viral vector (AAV) ,single-domain antibodies ,VHH ,botulinum neurotoxin ,Clostridium botulinum ,botulism ,Microbiology ,QR1-502 - Abstract
Botulinum neurotoxin (BoNT) is one of the most dangerous bacterial toxins and a potential biological weapon component. BoNT mechanism of pathological action is based on inhibiting the release of neurotransmitters from nerve endings. To date, anti-BoNT therapy is reduced to the use of horse hyperimmune serum, which causes many side effects, as well as FDA-approved drug BabyBig which consists of human-derived anti-BoNT antibodies (IgG) for infant botulinum treatment. Therapeutics for botulism treatment based on safer monoclonal antibodies are undergoing clinical trials. In addition, agents have been developed for the specific prevention of botulism, but their effectiveness has not been proved. In this work, we have obtained a recombinant adeno-associated virus (rAAV-B11-Fc) expressing a single-domain antibody fused to the human IgG Fc-fragment (B11-Fc) and specific to botulinum toxin type A (BoNT/A). We have demonstrated that B11-Fc antibody, expressed via rAAV-B11-Fc treatment, can protect animals from lethal doses of botulinum toxin type A, starting from day 3 and at least 120 days after administration. Thus, our results showed that rAAV-B11-Fc can provide long-term expression of B11-Fc-neutralizing antibody in vivo and provide long-term protection against BoNT/A intoxication. Consequently, our study demonstrates the applicability of rAAV expressing protective antibodies for the prevention of intoxication caused by botulinum toxins.
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- 2022
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41. WIND SPEED MODEL BASED ON FRACTIONAL STOCHASTIC PROCESS
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Denis Y. Davydov and Sergey G. Obukhov
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wind energy ,wind speed modeling ,stochastic differential equations ,fractional brownian motion ,time series ,Engineering geology. Rock mechanics. Soil mechanics. Underground construction ,TA703-712 - Abstract
Relevance. The urgent task of the technical and economic development of the Northern and Eastern regions of Russia is to provide reliable and efficient power supply to consumers, geographically located in remote, hard-to-reach areas. The use of wind power plants is a promising way to solve this problem. The primary task of the design and feasibility study of the use of wind power plants is to predict changes in wind speeds at the site of the power plant installation. The stochastic nature of the wind and its spatiotemporal variability explain the high complexity of this problem, for the solution of which the methods of mathematical modeling are used. The known models of wind speed based on Markov chains, autoregressive moving-average and other discrete models do not allow varying the time step, which does not allow their use for simulation of operating modes of wind turbines and wind energy systems. The article proposes a model of wind speed based on the stochastic differential equation which eliminates this drawback. The aim of the study is to construct wind speed model based on fractional Ornstein–Uhlenbeck process with a periodic long-term mean, which provides modeling of static and dynamic modes of operation of a wind power plant at different time intervals. Methods: mathematical and computer modeling using Matlab/Simulink software environment. Results. The proposed model, in contrast to the known SDE-based models, is able to produce autocorrelated wind speed trajectories with long-term dependence, daily and monthly variations to perform more detailed simulation of the operating modes of wind turbines at different time intervals with the required time step. The model was tested using the data of climatic observations of wind speed obtained from electronic archive of the All-Russian Institute of Hydrometeorological Information. The model adequacy was evaluated by comparing characteristics of simulated wind speed trajectories with actual observations collected at 518 weather stations located on territory of Russia.
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- 2021
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42. Community structure and vertical distribution of planktonic ciliates in the saline meromictic lake Shira during breakdown of meromixis
- Author
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Khromechek, Elena B., Barkhatov, Yuri V., and Rogozin, Denis Y.
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- 2021
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43. Methodological Approach to Classification of Digital Technologies According to the Criterion of Ecological Effectiveness and Sustainability
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Shkodinsky, Sergey V., Rykova, Inna N., Taburov, Denis Y., Kacprzyk, Janusz, Series Editor, Gomide, Fernando, Advisory Editor, Kaynak, Okyay, Advisory Editor, Liu, Derong, Advisory Editor, Pedrycz, Witold, Advisory Editor, Polycarpou, Marios M., Advisory Editor, Rudas, Imre J., Advisory Editor, Wang, Jun, Advisory Editor, Kolmykova, Tatiana, editor, and Kharchenko, Ekaterina V., editor
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- 2020
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44. Analyzing the Use of the Production Potential in the Russian Federation’s Territories During the Transition to the Digital Economy
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Bezdudnaya, Anna G., Gundorova, Marina A., Gerashchenkova, Tatyana M., Gerasimov, Kirill B., Fraimovich, Denis Y., Kacprzyk, Janusz, Series Editor, Gomide, Fernando, Advisory Editor, Kaynak, Okyay, Advisory Editor, Liu, Derong, Advisory Editor, Pedrycz, Witold, Advisory Editor, Polycarpou, Marios M., Advisory Editor, Rudas, Imre J., Advisory Editor, Wang, Jun, Advisory Editor, Popkova, Elena G., editor, and Sergi, Bruno S., editor
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- 2020
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45. Human TRIM14 protects transgenic mice from influenza A viral infection without activation of other innate immunity pathways
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Nenasheva, Valentina V., Nikitenko, Natalia A., Stepanenko, Ekaterina A., Makarova, Irina V., Andreeva, Lyudmila E., Kovaleva, Galina V., Lysenko, Andrey A., Tukhvatulin, Amir I., Logunov, Denis Y., and Tarantul, Vyacheslav Z.
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- 2021
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46. Safety and immunogenicity of an rAd26 and rAd5 vector-based heterologous prime-boost COVID-19 vaccine in two formulations: two open, non-randomised phase 1/2 studies from Russia
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Logunov, Denis Y, Dolzhikova, Inna V, Zubkova, Olga V, Tukhvatulin, Amir I, Shcheblyakov, Dmitry V, Dzharullaeva, Alina S, Grousova, Daria M, Erokhova, Alina S, Kovyrshina, Anna V, Botikov, Andrei G, Izhaeva, Fatima M, Popova, Olga, Ozharovskaya, Tatiana A, Esmagambetov, Ilias B, Favorskaya, Irina A, Zrelkin, Denis I, Voronina, Daria V, Shcherbinin, Dmitry N, Semikhin, Alexander S, Simakova, Yana V, Tokarskaya, Elizaveta A, Lubenets, Nadezhda L, Egorova, Daria A, Shmarov, Maksim M, Nikitenko, Natalia A, Morozova, Lola F, Smolyarchuk, Elena A, Kryukov, Evgeny V, Babira, Vladimir F, Borisevich, Sergei V, Naroditsky, Boris S, and Gintsburg, Alexander L
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- 2020
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47. Recombinant vaccine against botulism in buffaloes: Evaluation of the humoral immune response over 12 months
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Otaka, Denis Y., Barbosa, José D., de Souza, Loise A., Moreira, Clóvis, Jr., Ferreira, Marcos R.A., Donassolo, Rafael A., Conceição, Fabrício R., and Salvarani, Felipe M.
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- 2020
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48. Trivalent mRNA vaccine-candidate against seasonal flu with cross-specific humoral immune response
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Mazunina, Elena P., primary, Gushchin, Vladimir A., additional, Kleymenov, Denis A., additional, Siniavin, Andrei E., additional, Burtseva, Elena I., additional, Shmarov, Maksim M., additional, Mukasheva, Evgenya A., additional, Bykonia, Evgeniia N., additional, Kozlova, Sofia R., additional, Evgrafova, Elina A., additional, Zolotar, Anastasia N., additional, Shidlovskaya, Elena V., additional, Kirillova, Elena S., additional, Krepkaia, Anastasiya S., additional, Usachev, Evgeny V., additional, Kuznetsova, Nadezhda A., additional, Ivanov, Igor A., additional, Dmitriev, Sergey E., additional, Ivanov, Roman A., additional, Logunov, Denis Y., additional, and Gintsburg, Alexander L., additional
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- 2024
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49. Major Role of S-Glycoprotein in Providing Immunogenicity and Protective Immunity in mRNA Lipid Nanoparticle Vaccines Based on SARS-CoV-2 Structural Proteins
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Bykonia, Evgeniia N., primary, Kleymenov, Denis A., additional, Gushchin, Vladimir A., additional, Siniavin, Andrei E., additional, Mazunina, Elena P., additional, Kozlova, Sofia R., additional, Zolotar, Anastasia N., additional, Usachev, Evgeny V., additional, Kuznetsova, Nadezhda A., additional, Shidlovskaya, Elena V., additional, Pochtovyi, Andrei A., additional, Kustova, Daria D., additional, Ivanov, Igor A., additional, Dmitriev, Sergey E., additional, Ivanov, Roman A., additional, Logunov, Denis Y., additional, and Gintsburg, Alexander L., additional
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- 2024
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50. Clostridium perfringens α and β recombinant toxoids in equine immunization
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Nayra F.Q.R. Freitas, José D. Barbosa, Denis Y. Otaka, Marcos Roberto A. Ferreira, Rafael R. Rodrigues, Clóvis Moreira Jr, Fabricio R. Conceição, and Felipe M. Salvarani
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Clostridium perfringens ,alpha toxin ,beta toxin ,recombinant toxoids ,equine ,immunization ,vaccination ,myonecrosis ,enterocolitis ,horses ,Veterinary medicine ,SF600-1100 - Abstract
ABSTRACT: Clostridium perfringens is considered one of the main causative agents of superacute enterocolitis, usually fatal in the equine species, due to the action of the β toxin, and is responsible for causing severe myonecrosis, by the action of the α toxin. The great importance of this agent in the equine economy is due to high mortality and lack of vaccines, which are the main form of prevention, which guarantee the immunization of this animal species. The aim of this study was to evaluate three different concentrations (100, 200 and 400μg) of C. perfringens α and β recombinant toxoids in equine immunization and to compare with a group vaccinated with a commercial toxoid. The commercial vaccine was not able to stimulate an immune response and the recombinant vaccine was able to induce satisfactory humoral immune response in vaccinated horses, proving to be an alternative prophylactic for C. perfringens infection.
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- 2020
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