1. Description of Gabonibacter massiliensis gen. nov., sp. nov., a New Member of the Family Porphyromonadaceae Isolated from the Human Gut Microbiota
- Author
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Didier Raoult, Gaël Mourembou, J. Rathored, A. Ndjoyi-Mbiguino, Jean Bernard Lekana-Douki, Nicholas Armstrong, Catherine Robert, Saber Khelaifia, Pierre-Edouard Fournier, Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut National de la Santé et de la Recherche Médicale (INSERM)-IFR48, Institut des sciences biologiques (INSB-CNRS)-Institut des sciences biologiques (INSB-CNRS)-Centre National de la Recherche Scientifique (CNRS), Ecole Doctorale Régionale d’Afrique Centrale, Centre International de Recherches Médicales de Franceville (CIRMF), Département de Parasitologie, Mycologie et Médecine Tropicale, Faculté de Médecine-Université de Libreville, Institut Hospitalier Universitaire Méditerranée Infection (IHU Marseille), Assistance Publique - Hôpitaux de Marseille (APHM), and INSB-INSB-Centre National de la Recherche Scientifique (CNRS)
- Subjects
DNA, Bacterial ,Male ,0301 basic medicine ,Adolescent ,Genotype ,Biology ,Gabonibacter massiliensis ,medicine.disease_cause ,Applied Microbiology and Biotechnology ,Microbiology ,03 medical and health sciences ,Bacterial Proteins ,[SDV.MHEP.MI]Life Sciences [q-bio]/Human health and pathology/Infectious diseases ,Phylogenetics ,Genus ,RNA, Ribosomal, 16S ,medicine ,Humans ,ORFS ,Phylogeny ,Base Composition ,Bacteria ,Bacteroidetes ,General Medicine ,biology.organism_classification ,Bacterial Typing Techniques ,Gastrointestinal Microbiome ,Gastrointestinal Tract ,030104 developmental biology ,Culturomics ,Coccobacillus - Abstract
International audience; The identification of human-associated bacteria is very important to control infectious diseases. In recent years, we diversified culture conditions in a strategy named culturomics, and isolated more than 100 new bacterial species and/or genera. Using this strategy, strain GM7, a strictly anaerobic gram-negative bacterium was recently isolated from a stool specimen of a healthy Gabonese patient. It is a motile coccobacillus without catalase and oxidase activities. The genome of Gabonibacter massiliensis is 3,397,022 bp long with 2880 ORFs and a G+C content of 42.09 %. Of the predicted genes, 2,819 are protein-coding genes, and 61 are RNAs. Strain GM7 differs from the closest genera within the family Porphyromonadaceae both genotypically and in shape and motility. Thus, we propose that strain GM7(T) (=CSUR P2336 = DSM 101039) is the type strain of the new genus Gabonibacter gen. nov. and the new species G. massiliensis gen. nov., sp. nov.
- Published
- 2016
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