17 results on '"Cortés Calabuig Á"'
Search Results
2. Biological pathways and comparison with biopsy signals and cellular origin of peripheral blood transcriptomic profiles during kidney allograft pathology
- Author
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Van Loon, Elisabet, Lamarthée, Baptiste, de Loor, Henriette, Van Craenenbroeck, Amaryllis H., Brouard, Sophie, Danger, Richard, Giral, Magali, Callemeyn, Jasper, Tinel, Claire, Cortés Calabuig, Álvaro, Koshy, Priyanka, Sprangers, Ben, Kuypers, Dirk, Gwinner, Wilfried, Anglicheau, Dany, Marquet, Pierre, and Naesens, Maarten
- Published
- 2022
- Full Text
- View/download PDF
3. Constraints in RDF
- Author
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Akhtar, Waseem, Cortés-Calabuig, Álvaro, Paredaens, Jan, Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Nierstrasz, Oscar, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Sudan, Madhu, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Doug, Series editor, Vardi, Moshe Y., Series editor, Weikum, Gerhard, Series editor, Schewe, Klaus-Dieter, editor, and Thalheim, Bernhard, editor
- Published
- 2011
- Full Text
- View/download PDF
4. Representation of Partial Knowledge and Query Answering in Locally Complete Databases
- Author
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Cortés-Calabuig, Álvaro, Denecker, Marc, Arieli, Ofer, Bruynooghe, Maurice, Hutchison, David, editor, Kanade, Takeo, editor, Kittler, Josef, editor, Kleinberg, Jon M., editor, Mattern, Friedemann, editor, Mitchell, John C., editor, Naor, Moni, editor, Nierstrasz, Oscar, editor, Pandu Rangan, C., editor, Steffen, Bernhard, editor, Sudan, Madhu, editor, Terzopoulos, Demetri, editor, Tygar, Dough, editor, Vardi, Moshe Y., editor, Weikum, Gerhard, editor, Carbonell, Jaime G., editor, Siekmann, Jörg, editor, Hermann, Miki, editor, and Voronkov, Andrei, editor
- Published
- 2006
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- View/download PDF
5. On the Local Closed-World Assumption of Data-Sources
- Author
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Cortés-Calabuig, Alvaro, Denecker, Marc, Arieli, Ofer, Van Nuffelen, Bert, Bruynooghe, Maurice, Hutchison, David, editor, Kanade, Takeo, editor, Kittler, Josef, editor, Kleinberg, Jon M., editor, Mattern, Friedemann, editor, Mitchell, John C., editor, Naor, Moni, editor, Nierstrasz, Oscar, editor, Pandu Rangan, C., editor, Steffen, Bernhard, editor, Sudan, Madhu, editor, Terzopoulos, Demetri, editor, Tygar, Dough, editor, Vardi, Moshe Y., editor, Weikum, Gerhard, editor, Carbonell, Jaime G., editor, Siekmann, Jörg, editor, Baral, Chitta, editor, Greco, Gianluigi, editor, Leone, Nicola, editor, and Terracina, Giorgio, editor
- Published
- 2005
- Full Text
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6. An ID-Logic Formalization of the Composition of Autonomous Databases
- Author
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Van Nuffelen, Bert, Arieli, Ofer, Cortés-Calabuig, Alvaro, Bruynooghe, Maurice, Hutchison, David, editor, Kanade, Takeo, editor, Kittler, Josef, editor, Kleinberg, Jon M., editor, Mattern, Friedemann, editor, Mitchell, John C., editor, Naor, Moni, editor, Nierstrasz, Oscar, editor, Pandu Rangan, C., editor, Steffen, Bernhard, editor, Sudan, Madhu, editor, Terzopoulos, Demetri, editor, Tygar, Dough, editor, Vardi, Moshe Y., editor, Weikum, Gerhard, editor, Carbonell, Jaime G., editor, Siekmann, Jörg, editor, Baral, Chitta, editor, Greco, Gianluigi, editor, Leone, Nicola, editor, and Terracina, Giorgio, editor
- Published
- 2005
- Full Text
- View/download PDF
7. Data Integration Using ID-Logic
- Author
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Van Nuffelen, Bert, Cortés-Calabuig, Alvaro, Denecker, Marc, Arieli, Ofer, Bruynooghe, Maurice, Kanade, Takeo, editor, Kittler, Josef, editor, Kleinberg, Jon M., editor, Mattern, Friedemann, editor, Mitchell, John C., editor, Naor, Moni, editor, Nierstrasz, Oscar, editor, Pandu Rangan, C., editor, Steffen, Bernhard, editor, Sudan, Madhu, editor, Terzopoulos, Demetri, editor, Tygar, Dough, editor, Vardi, Moshe Y., editor, Weikum, Gerhard, editor, Persson, Anne, editor, and Stirna, Janis, editor
- Published
- 2004
- Full Text
- View/download PDF
8. Zeb2 regulates myogenic differentiation in pluripotent stem cells
- Author
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Di Filippo, E.S. (Ester Sara), Costamagna, D. (Domiziana), Giacomazzi, G. (Giorgia), Cortés-Calabuig, Á. (Álvaro), Stryjewska, A. (Agata), Huylebroeck, D. (Danny), Fulle, S. (Stefania), Sampaolesi, M. (Maurilio), Di Filippo, E.S. (Ester Sara), Costamagna, D. (Domiziana), Giacomazzi, G. (Giorgia), Cortés-Calabuig, Á. (Álvaro), Stryjewska, A. (Agata), Huylebroeck, D. (Danny), Fulle, S. (Stefania), and Sampaolesi, M. (Maurilio)
- Abstract
Skeletal muscle differentiation is triggered by a unique family of myogenic basic helix-loop-helix transcription factors, including MyoD, MRF-4, Myf-5, and Myogenin. These transcription factors bind promoters and distant regulatory regions, including E-box elements, of genes whose expression is restricted to muscle cells. Other E-box binding zinc finger proteins target the same DNA response elements, however, their function in muscle development and regeneration is still unknown. Here, we show that the transcription factor zinc finger E-box-binding homeobox 2 (Zeb2, Sip-1, Zfhx1b) is present in skeletal muscle tissues. We investigate the role of Zeb2 in skeletal muscle differentiation using genetic tools and transgenic mouse embryonic stem cells, together with single-cell RNA-sequencing and in vivo muscle engraftment capability. We show that Zeb2 over-expression has a positive impact on skeletal muscle differentiation in pluripotent stem cells and adult myogenic progenitors. We therefore propose that Zeb2 is a novel myogenic regulator and a possible target for improving skeletal muscle regeneration. The non-neural roles of Zeb2 are poorly understood.
- Published
- 2020
- Full Text
- View/download PDF
9. MicroRNAs promote skeletal muscle differentiation of mesodermal iPSC-derived progenitors
- Author
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Giacomazzi, G. (Giorgia), Holvoet, B. (Bryan), Trenson, S. (Sander), Caluwé, E. (Ellen), Kravic, B. (Bojana), Grosemans, H. (Hanne), Cortés-Calabuig, Á. (Álvaro), Deroose, C.M. (Christophe M.), Huylebroeck, D. (Danny), Hashemolhosseini, S. (Said), Janssens, S. (Stefan), McNally, E. (Elizabeth), Quattrocelli, M. (Mattia), Sampaolesi, M. (Maurilio), Giacomazzi, G. (Giorgia), Holvoet, B. (Bryan), Trenson, S. (Sander), Caluwé, E. (Ellen), Kravic, B. (Bojana), Grosemans, H. (Hanne), Cortés-Calabuig, Á. (Álvaro), Deroose, C.M. (Christophe M.), Huylebroeck, D. (Danny), Hashemolhosseini, S. (Said), Janssens, S. (Stefan), McNally, E. (Elizabeth), Quattrocelli, M. (Mattia), and Sampaolesi, M. (Maurilio)
- Abstract
Muscular dystrophies (MDs) are often characterized by impairment of both skeletal and cardiac muscle. Regenerative strategies for both compartments therefore constitute a therapeutic avenue. Mesodermal iPSC-derived progenitors (MiPs) can regenerate both striated muscle types simultaneously in mice. Importantly, MiP myogenic propensity is influenced by somatic lineage retention. However, it is still unknown whether human MiPs have in vivo potential. Furthermore, methods to enhance the intrinsic myogenic properties of MiPs are likely needed, given the scope and need to correct large amounts of muscle in the MDs. Here, we document that human MiPs can successfully engraft into the skeletal muscle and hearts of dystrophic mice. Utilizing non-invasive live imaging and selectively induced apoptosis, we report evidence of striated muscle regeneration in vivo in mice by human MiPs. Finally, combining RNA-seq and miRNA-seq data, we define miRNA cocktails that promote the myogenic potential of human MiPs.
- Published
- 2017
- Full Text
- View/download PDF
10. Disjunctive Constraints in RDF and Their Application to Context Schemas
- Author
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Rabosio, Emanuele, Cortés Calabuig, Á., and Paredaens, J.
- Subjects
Computer. Automation ,integrity constraints ,RDF ,context schemas - Published
- 2014
11. Extracellular vesicle-derived miRNAs improve stem cell-based therapeutic approaches in muscle wasting conditions.
- Author
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Yedigaryan L, Martínez-Sarrà E, Giacomazzi G, Giarratana N, van der Veer BK, Rotini A, Querceto S, Grosemans H, Cortés-Calabuig Á, Salucci S, Battistelli M, Falcieri E, Gijsbers R, Quattrocelli M, Peng Koh K, De Waele L, Buyse GM, Derua R, and Sampaolesi M
- Subjects
- Animals, Mice, Muscular Atrophy, Stem Cells, Muscle, Skeletal, MicroRNAs genetics, Extracellular Vesicles
- Abstract
Skeletal muscle holds an intrinsic capability of growth and regeneration both in physiological conditions and in case of injury. Chronic muscle illnesses, generally caused by genetic and acquired factors, lead to deconditioning of the skeletal muscle structure and function, and are associated with a significant loss in muscle mass. At the same time, progressive muscle wasting is a hallmark of aging. Given the paracrine properties of myogenic stem cells, extracellular vesicle-derived signals have been studied for their potential implication in both the pathogenesis of degenerative neuromuscular diseases and as a possible therapeutic target. In this study, we screened the content of extracellular vesicles from animal models of muscle hypertrophy and muscle wasting associated with chronic disease and aging. Analysis of the transcriptome, protein cargo, and microRNAs (miRNAs) allowed us to identify a hypertrophic miRNA signature amenable for targeting muscle wasting, consisting of miR-1 and miR-208a. We tested this signature among others in vitro on mesoangioblasts (MABs), vessel-associated adult stem cells, and we observed an increase in the efficiency of myogenic differentiation. Furthermore, injections of miRNA-treated MABs in aged mice resulted in an improvement in skeletal muscle features, such as muscle weight, strength, cross-sectional area, and fibrosis compared to controls. Overall, we provide evidence that the extracellular vesicle-derived miRNA signature we identified enhances the myogenic potential of myogenic stem cells., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Yedigaryan, Martínez-Sarrà, Giacomazzi, Giarratana, van der Veer, Rotini, Querceto, Grosemans, Cortés-Calabuig, Salucci, Battistelli, Falcieri, Gijsbers, Quattrocelli, Peng Koh, De Waele, Buyse, Derua and Sampaolesi.)
- Published
- 2022
- Full Text
- View/download PDF
12. Long-term culture of patient-derived cardiac organoids recapitulated Duchenne muscular dystrophy cardiomyopathy and disease progression.
- Author
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Marini V, Marino F, Aliberti F, Giarratana N, Pozzo E, Duelen R, Cortés Calabuig Á, La Rovere R, Vervliet T, Torella D, Bultynck G, Sampaolesi M, and Chai YC
- Abstract
Duchenne Muscular Dystrophy (DMD) is an X-linked neuromuscular disease which to date is incurable. The major cause of death is dilated cardiomyopathy however, its pathogenesis is unclear as existing cellular and animal models do not fully recapitulate the human disease phenotypes. In this study, we generated cardiac organoids from patient-derived induced pluripotent stem cells (DMD-COs) and isogenic-corrected controls (DMD-Iso-COs) and studied if DMD-related cardiomyopathy and disease progression occur in the organoids upon long-term culture (up to 93 days). Histological analysis showed that DMD-COs lack initial proliferative capacity, displayed a progressive loss of sarcoglycan localization and high stress in endoplasmic reticulum. Additionally, cardiomyocyte deterioration, fibrosis and aberrant adipogenesis were observed in DMD-COs over time. RNA sequencing analysis confirmed a distinct transcriptomic profile in DMD-COs which was associated with functional enrichment in hypertrophy/dilated cardiomyopathy, arrhythmia, adipogenesis and fibrosis pathways. Moreover, five miRNAs were identified to be crucial in this dysregulated gene network. In conclusion, we generated patient-derived cardiac organoid model that displayed DMD-related cardiomyopathy and disease progression phenotypes in long-term culture. We envision the feasibility to develop a more complex, realistic and reliable in vitro 3D human cardiac-mimics to study DMD-related cardiomyopathies., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Marini, Marino, Aliberti, Giarratana, Pozzo, Duelen, Cortés Calabuig, La Rovere, Vervliet, Torella, Bultynck, Sampaolesi and Chai.)
- Published
- 2022
- Full Text
- View/download PDF
13. ATP13A3 is a major component of the enigmatic mammalian polyamine transport system.
- Author
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Hamouda NN, Van den Haute C, Vanhoutte R, Sannerud R, Azfar M, Mayer R, Cortés Calabuig Á, Swinnen JV, Agostinis P, Baekelandt V, Annaert W, Impens F, Verhelst SHL, Eggermont J, Martin S, and Vangheluwe P
- Subjects
- Adenosine Triphosphatases genetics, Animals, Biological Transport, CHO Cells, Cricetinae, Cricetulus, Enzyme Inhibitors pharmacology, Mitoguazone pharmacology, Mutation, Whole Genome Sequencing methods, Adenosine Triphosphatases metabolism, Membrane Transport Proteins genetics, Membrane Transport Proteins metabolism, Polyamines metabolism, Putrescine metabolism
- Abstract
Polyamines, such as putrescine, spermidine, and spermine, are physiologically important polycations, but the transporters responsible for their uptake in mammalian cells remain poorly characterized. Here, we reveal a new component of the mammalian polyamine transport system using CHO-MG cells, a widely used model to study alternative polyamine uptake routes and characterize polyamine transport inhibitors for therapy. CHO-MG cells present polyamine uptake deficiency and resistance to a toxic polyamine biosynthesis inhibitor methylglyoxal bis-(guanylhydrazone) (MGBG), but the molecular defects responsible for these cellular characteristics remain unknown. By genome sequencing of CHO-MG cells, we identified mutations in an unexplored gene, ATP13A3, and found disturbed mRNA and protein expression. ATP13A3 encodes for an orphan P5B-ATPase (ATP13A3), a P-type transport ATPase that represents a candidate polyamine transporter. Interestingly, ATP13A3 complemented the putrescine transport deficiency and MGBG resistance of CHO-MG cells, whereas its knockdown in WT cells induced a CHO-MG phenotype demonstrated as a decrease in putrescine uptake and MGBG sensitivity. Taken together, our findings identify ATP13A3, which has been previously genetically linked with pulmonary arterial hypertension, as a major component of the mammalian polyamine transport system that confers sensitivity to MGBG., Competing Interests: Conflict of interest The authors declare that they have no conflicts of interest with the contents of this article., (Copyright © 2020 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
14. Zeb2 Regulates Myogenic Differentiation in Pluripotent Stem Cells.
- Author
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Di Filippo ES, Costamagna D, Giacomazzi G, Cortés-Calabuig Á, Stryjewska A, Huylebroeck D, Fulle S, and Sampaolesi M
- Subjects
- Animals, Cell Line, Male, Mice, Mice, Nude, Muscle, Skeletal cytology, Muscle, Skeletal growth & development, Muscle, Skeletal metabolism, Myoblasts cytology, Myoblasts metabolism, Pluripotent Stem Cells cytology, Zinc Finger E-box Binding Homeobox 2 genetics, Cell Differentiation, Muscle Development, Pluripotent Stem Cells metabolism, Zinc Finger E-box Binding Homeobox 2 metabolism
- Abstract
Skeletal muscle differentiation is triggered by a unique family of myogenic basic helix-loop-helix transcription factors, including MyoD, MRF-4, Myf-5, and Myogenin. These transcription factors bind promoters and distant regulatory regions, including E-box elements, of genes whose expression is restricted to muscle cells. Other E-box binding zinc finger proteins target the same DNA response elements, however, their function in muscle development and regeneration is still unknown. Here, we show that the transcription factor zinc finger E-box-binding homeobox 2 (Zeb2, Sip-1, Zfhx1b) is present in skeletal muscle tissues. We investigate the role of Zeb2 in skeletal muscle differentiation using genetic tools and transgenic mouse embryonic stem cells, together with single-cell RNA-sequencing and in vivo muscle engraftment capability. We show that Zeb2 over-expression has a positive impact on skeletal muscle differentiation in pluripotent stem cells and adult myogenic progenitors. We therefore propose that Zeb2 is a novel myogenic regulator and a possible target for improving skeletal muscle regeneration. The non-neural roles of Zeb2 are poorly understood.
- Published
- 2020
- Full Text
- View/download PDF
15. Preeclampsia is Associated with Sex-Specific Transcriptional and Proteomic Changes in Fetal Erythroid Cells.
- Author
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Masoumi Z, Maes GE, Herten K, Cortés-Calabuig Á, Alattar AG, Hanson E, Erlandsson L, Mezey E, Magnusson M, Vermeesch JR, Familari M, and Hansson SR
- Subjects
- Cell Differentiation genetics, Cell Movement genetics, Erythropoiesis genetics, Female, Gene Expression Regulation, Hematopoietic Stem Cells metabolism, Humans, Male, Pre-Eclampsia pathology, Pregnancy, Pregnancy Outcome genetics, Protein Biosynthesis, Transcriptome genetics, Umbilical Cord pathology, Erythroid Cells metabolism, Fetus pathology, Pre-Eclampsia genetics, Proteomics, Sex Characteristics, Transcription, Genetic
- Abstract
Preeclampsia (PE) has been associated with placental dysfunction, resulting in fetal hypoxia, accelerated erythropoiesis, and increased erythroblast count in the umbilical cord blood (UCB). Although the detailed effects remain unknown, placental dysfunction can also cause inflammation, nutritional, and oxidative stress in the fetus that can affect erythropoiesis. Here, we compared the expression of surface adhesion molecules and the erythroid differentiation capacity of UCB hematopoietic stem/progenitor cells (HSPCs), UCB erythroid profiles along with the transcriptome and proteome of these cells between male and female fetuses from PE and normotensive pregnancies. While no significant differences were observed in UCB HSPC migration/homing and in vitro erythroid colony differentiation, the UCB HSPC transcriptome and the proteomic profile of the in vitro differentiated erythroid cells differed between PE vs. normotensive samples. Accordingly, despite the absence of significant differences in the UCB erythroid populations in male or female fetuses from PE or normotensive pregnancies, transcriptional changes were observed during erythropoiesis, particularly affecting male fetuses. Pathway analysis suggested deregulation in the mammalian target of rapamycin complex 1/AMP-activated protein kinase (mTORC1/AMPK) signaling pathways controlling cell cycle, differentiation, and protein synthesis. These results associate PE with transcriptional and proteomic changes in fetal HSPCs and erythroid cells that may underlie the higher erythroblast count in the UCB in PE.
- Published
- 2019
- Full Text
- View/download PDF
16. ACE-inhibition induces a cardioprotective transcriptional response in the metabolic syndrome heart.
- Author
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Yakubova A, Thorrez L, Svetlichnyy D, Zwarts L, Vulsteke V, Laenen G, Oosterlinck W, Moreau Y, Dehaspe L, Van Houdt J, Cortés-Calabuig Á, De Moor B, Callaerts P, and Herijgers P
- Subjects
- Aged, Animals, Atherosclerosis drug therapy, Atherosclerosis etiology, Atherosclerosis physiopathology, Cardiotonic Agents administration & dosage, Cardiovascular Diseases drug therapy, Cardiovascular Diseases etiology, Cardiovascular Diseases physiopathology, Disease Models, Animal, Heart drug effects, Heart physiopathology, Humans, Metabolic Networks and Pathways genetics, Metabolic Syndrome complications, Metabolic Syndrome genetics, Metabolic Syndrome physiopathology, Mice, Mice, Knockout, Obesity drug therapy, Obesity genetics, Obesity physiopathology, Peptidyl-Dipeptidase A genetics, Transcriptome drug effects, Transcriptome genetics, Angiotensin-Converting Enzyme Inhibitors administration & dosage, Atherosclerosis genetics, Cardiovascular Diseases genetics, Metabolic Syndrome drug therapy, Receptors, LDL genetics
- Abstract
Cardiovascular disease associated with metabolic syndrome has a high prevalence, but the mechanistic basis of metabolic cardiomyopathy remains poorly understood. We characterised the cardiac transcriptome in a murine metabolic syndrome (MetS) model (LDLR-/-; ob/ob, DKO) relative to the healthy, control heart (C57BL/6, WT) and the transcriptional changes induced by ACE-inhibition in those hearts. RNA-Seq, differential gene expression and transcription factor analysis identified 288 genes differentially expressed between DKO and WT hearts implicating 72 pathways. Hallmarks of metabolic cardiomyopathy were increased activity in integrin-linked kinase signalling, Rho signalling, dendritic cell maturation, production of nitric oxide and reactive oxygen species in macrophages, atherosclerosis, LXR-RXR signalling, cardiac hypertrophy, and acute phase response pathways. ACE-inhibition had a limited effect on gene expression in WT (55 genes, 23 pathways), and a prominent effect in DKO hearts (1143 genes, 104 pathways). In DKO hearts, ACE-I appears to counteract some of the MetS-specific pathways, while also activating cardioprotective mechanisms. We conclude that MetS and control murine hearts have unique transcriptional profiles and exhibit a partially specific transcriptional response to ACE-inhibition.
- Published
- 2018
- Full Text
- View/download PDF
17. MicroRNAs promote skeletal muscle differentiation of mesodermal iPSC-derived progenitors.
- Author
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Giacomazzi G, Holvoet B, Trenson S, Caluwé E, Kravic B, Grosemans H, Cortés-Calabuig Á, Deroose CM, Huylebroeck D, Hashemolhosseini S, Janssens S, McNally E, Quattrocelli M, and Sampaolesi M
- Subjects
- Animals, Cell Differentiation, Echocardiography, Heart diagnostic imaging, Humans, Mice, Muscle, Skeletal cytology, Muscle, Skeletal diagnostic imaging, Muscle, Skeletal pathology, Muscular Dystrophy, Animal diagnostic imaging, Myocardium pathology, Regeneration, Heart growth & development, Induced Pluripotent Stem Cells cytology, Mesoderm cytology, MicroRNAs genetics, Muscle Development genetics, Muscle, Skeletal growth & development, Muscular Dystrophy, Animal pathology, Myocardium cytology
- Abstract
Muscular dystrophies (MDs) are often characterized by impairment of both skeletal and cardiac muscle. Regenerative strategies for both compartments therefore constitute a therapeutic avenue. Mesodermal iPSC-derived progenitors (MiPs) can regenerate both striated muscle types simultaneously in mice. Importantly, MiP myogenic propensity is influenced by somatic lineage retention. However, it is still unknown whether human MiPs have in vivo potential. Furthermore, methods to enhance the intrinsic myogenic properties of MiPs are likely needed, given the scope and need to correct large amounts of muscle in the MDs. Here, we document that human MiPs can successfully engraft into the skeletal muscle and hearts of dystrophic mice. Utilizing non-invasive live imaging and selectively induced apoptosis, we report evidence of striated muscle regeneration in vivo in mice by human MiPs. Finally, combining RNA-seq and miRNA-seq data, we define miRNA cocktails that promote the myogenic potential of human MiPs.
- Published
- 2017
- Full Text
- View/download PDF
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