1. microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data
- Author
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Zuffa, Simone, Schmid, Robin, Bauermeister, Anelize, P. Gomes, Paulo Wender, Caraballo-Rodriguez, Andres M, El Abiead, Yasin, Aron, Allegra T, Gentry, Emily C, Zemlin, Jasmine, Meehan, Michael J, Avalon, Nicole E, Cichewicz, Robert H, Buzun, Ekaterina, Terrazas, Marvic Carrillo, Hsu, Chia-Yun, Oles, Renee, Ayala, Adriana Vasquez, Zhao, Jiaqi, Chu, Hiutung, Kuijpers, Mirte CM, Jackrel, Sara L, Tugizimana, Fidele, Nephali, Lerato Pertunia, Dubery, Ian A, Madala, Ntakadzeni Edwin, Moreira, Eduarda Antunes, Costa-Lotufo, Leticia Veras, Lopes, Norberto Peporine, Rezende-Teixeira, Paula, Jimenez, Paula C, Rimal, Bipin, Patterson, Andrew D, Traxler, Matthew F, Pessotti, Rita de Cassia, Alvarado-Villalobos, Daniel, Tamayo-Castillo, Giselle, Chaverri, Priscila, Escudero-Leyva, Efrain, Quiros-Guerrero, Luis-Manuel, Bory, Alexandre Jean, Joubert, Juliette, Rutz, Adriano, Wolfender, Jean-Luc, Allard, Pierre-Marie, Sichert, Andreas, Pontrelli, Sammy, Pullman, Benjamin S, Bandeira, Nuno, Gerwick, William H, Gindro, Katia, Massana-Codina, Josep, Wagner, Berenike C, Forchhammer, Karl, Petras, Daniel, Aiosa, Nicole, Garg, Neha, Liebeke, Manuel, Bourceau, Patric, Kang, Kyo Bin, Gadhavi, Henna, de Carvalho, Luiz Pedro Sorio, Silva dos Santos, Mariana, Pérez-Lorente, Alicia Isabel, Molina-Santiago, Carlos, Romero, Diego, Franke, Raimo, Brönstrup, Mark, Vera Ponce de León, Arturo, Pope, Phillip Byron, La Rosa, Sabina Leanti, La Barbera, Giorgia, Roager, Henrik M, Laursen, Martin Frederik, Hammerle, Fabian, Siewert, Bianka, Peintner, Ursula, Licona-Cassani, Cuauhtemoc, Rodriguez-Orduña, Lorena, Rampler, Evelyn, Hildebrand, Felina, Koellensperger, Gunda, Schoeny, Harald, Hohenwallner, Katharina, Panzenboeck, Lisa, Gregor, Rachel, O’Neill, Ellis Charles, Roxborough, Eve Tallulah, Odoi, Jane, Bale, Nicole J, Ding, Su, Sinninghe Damsté, Jaap S, Guan, Xue Li, Cui, Jerry J, Ju, Kou-San, Silva, Denise Brentan, Silva, Fernanda Motta Ribeiro, da Silva, Gilvan Ferreira, Koolen, Hector HF, Grundmann, Carlismari, and Clement, Jason A
- Subjects
Microbiology ,Biological Sciences ,Good Health and Well Being ,Humans ,Tandem Mass Spectrometry ,Metabolomics ,Databases ,Factual ,Medical Microbiology - Abstract
microbeMASST, a taxonomically informed mass spectrometry (MS) search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging a curated database of >60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmentation patterns. Identification of microbe-derived metabolites and relative producers without a priori knowledge will vastly enhance the understanding of microorganisms' role in ecology and human health.
- Published
- 2024