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microbeMASST:a taxonomically informed mass spectrometry search tool for microbial metabolomics data
- Source :
- Zuffa , S , Schmid , R , Bauermeister , A , Paulo , P W , Caraballo-Rodriguez , A M , El Abiead , Y , Aron , A T , Gentry , E C , Zemlin , J , Meehan , M J , Avalon , N E , Cichewicz , R H , Buzun , E , Terrazas , M C , Hsu , C Y , Oles , R , Ayala , A V , Zhao , J , Chu , H , Kuijpers , M C M , Jackrel , S L , Tugizimana , F , Nephali , L P , Dubery , I A , Madala , N E , Moreira , E A , Costa-Lotufo , L V , Lopes , N P , Rezende-Teixeira , P , Jimenez , P C , Rimal , B , Patterson , A D , Traxler , M F , Pessotti , R D C , Alvarado-Villalobos , D , Tamayo-Castillo , G , Chaverri , P , Escudero-Leyva , E , Quiros-Guerrero , L M , Bory , A J , Joubert , J , Rutz , A , Wolfender , J-L , Allard , P-M , Sichert , A , Pontrelli , S , Pullman , B S , Bandeira , N , Gerwick , W H , Gindro , K , Massana-Codina , J , Wagner , B C , Forchhammer , K , Petras , D , Aiosa , N , Garg , N , Liebeke , M , Bourceau , P , Kang , K B , Gadhavi , H , de Carvalho , L P S , Silva dos Santos , M , Pérez-Lorente , A I , Molina-Santiago , C , Romero , D , Franke , R , Brönstrup , M , Vera Ponce de León , A , Pope , P B , La Rosa , S L , La Barbera , G , Roager , H M , Laursen , M F , Hammerle , F , Siewert , B , Peintner , U , Licona-Cassani , C , Rodriguez-Orduña , L , Rampler , E , Hildebrand , F , Koellensperger , G , Schoeny , H , Hohenwallner , K , Panzenboeck , L , Gregor , R , O’Neill , E C , Roxborough , E T , Odoi , J , Bale , N J , Ding , S , Sinninghe Damsté , J S , Guan , X L , Cui , J J , Ju , K S , Silva , D B , Silva , F M R , da Silva , G F , Koolen , H H F , Grundmann , C , Clement , J A , Mohimani , H , Broders , K , McPhail , K L , Ober-Singleton , S E , Rath , C M , McDonald , D , Knight , R , Wang , M & Dorrestein , P C 2024 , ' microbeMASST : a taxonomically informed mass spectrometry search tool for microbial metabolomics data ' , Nature Microbiology , vol. 9 , pp. 336-345 .
- Publication Year :
- 2024
-
Abstract
- microbeMASST, a taxonomically informed mass spectrometry (MS) search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging a curated database of >60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmentation patterns. Identification of microbe-derived metabolites and relative producers without a priori knowledge will vastly enhance the understanding of microorganisms’ role in ecology and human health.
Details
- Database :
- OAIster
- Journal :
- Zuffa , S , Schmid , R , Bauermeister , A , Paulo , P W , Caraballo-Rodriguez , A M , El Abiead , Y , Aron , A T , Gentry , E C , Zemlin , J , Meehan , M J , Avalon , N E , Cichewicz , R H , Buzun , E , Terrazas , M C , Hsu , C Y , Oles , R , Ayala , A V , Zhao , J , Chu , H , Kuijpers , M C M , Jackrel , S L , Tugizimana , F , Nephali , L P , Dubery , I A , Madala , N E , Moreira , E A , Costa-Lotufo , L V , Lopes , N P , Rezende-Teixeira , P , Jimenez , P C , Rimal , B , Patterson , A D , Traxler , M F , Pessotti , R D C , Alvarado-Villalobos , D , Tamayo-Castillo , G , Chaverri , P , Escudero-Leyva , E , Quiros-Guerrero , L M , Bory , A J , Joubert , J , Rutz , A , Wolfender , J-L , Allard , P-M , Sichert , A , Pontrelli , S , Pullman , B S , Bandeira , N , Gerwick , W H , Gindro , K , Massana-Codina , J , Wagner , B C , Forchhammer , K , Petras , D , Aiosa , N , Garg , N , Liebeke , M , Bourceau , P , Kang , K B , Gadhavi , H , de Carvalho , L P S , Silva dos Santos , M , Pérez-Lorente , A I , Molina-Santiago , C , Romero , D , Franke , R , Brönstrup , M , Vera Ponce de León , A , Pope , P B , La Rosa , S L , La Barbera , G , Roager , H M , Laursen , M F , Hammerle , F , Siewert , B , Peintner , U , Licona-Cassani , C , Rodriguez-Orduña , L , Rampler , E , Hildebrand , F , Koellensperger , G , Schoeny , H , Hohenwallner , K , Panzenboeck , L , Gregor , R , O’Neill , E C , Roxborough , E T , Odoi , J , Bale , N J , Ding , S , Sinninghe Damsté , J S , Guan , X L , Cui , J J , Ju , K S , Silva , D B , Silva , F M R , da Silva , G F , Koolen , H H F , Grundmann , C , Clement , J A , Mohimani , H , Broders , K , McPhail , K L , Ober-Singleton , S E , Rath , C M , McDonald , D , Knight , R , Wang , M & Dorrestein , P C 2024 , ' microbeMASST : a taxonomically informed mass spectrometry search tool for microbial metabolomics data ' , Nature Microbiology , vol. 9 , pp. 336-345 .
- Notes :
- application/pdf, English
- Publication Type :
- Electronic Resource
- Accession number :
- edsoai.on1426751295
- Document Type :
- Electronic Resource