1. Molecular basis of RNA recombination in the 3'UTR of chikungunya virus genome.
- Author
-
Bardossy ES, Volpe S, Suzuki Y, Merwaiss F, Faraj S, Montes M, Saleh MC, Alvarez DE, and Filomatori CV
- Subjects
- Animals, Chikungunya Fever virology, Chikungunya Fever genetics, Chikungunya Fever transmission, Humans, Aedes virology, Aedes genetics, RNA-Dependent RNA Polymerase genetics, RNA-Dependent RNA Polymerase metabolism, Cell Line, Chikungunya virus genetics, 3' Untranslated Regions genetics, RNA, Viral genetics, RNA, Viral metabolism, Recombination, Genetic, Virus Replication genetics, Genome, Viral
- Abstract
Chikungunya virus (CHIKV) is a rapidly spreading re-emergent virus transmitted from mosquitoes to humans. The emergence of epidemic variants has been associated with changes in the viral genome, such as the duplication of repeated sequences in the 3' untranslated region (UTR). Indeed, blocks of repeated sequences seemingly favor RNA recombination, providing the virus with a unique ability to continuously change the 3'UTR architecture during host switching. In this work, we provide experimental data on the molecular mechanism of RNA recombination and describe specific sequence and structural elements in the viral 3'UTR that favor template switching of the viral RNA-dependent RNA polymerase on the 3'UTR. Furthermore, we found that a 3'UTR deletion mutant that exhibits markedly delayed replication in mosquito cells and impaired transmission in vivo, recombines in reference laboratory strains of mosquitoes. Altogether, our data provide novel experimental evidence indicating that RNA recombination can act as a nucleic acid repair mechanism to add repeated sequences that are associated to high viral fitness in mosquito during chikungunya virus replication., (© The Author(s) 2024. Published by Oxford University Press on behalf of Nucleic Acids Research.)
- Published
- 2024
- Full Text
- View/download PDF