1. Hydrogenophaga aquatica sp. nov., isolated from a hot spring
- Author
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Yi-Han Hsu, Shih-Yao Lin, Chiu-Chung Young, Wei-An Lai, Asif Hameed, Cheng-Zhe Wen, and You-Cheng Liu
- Subjects
DNA, Bacterial ,0301 basic medicine ,Ubiquinone ,Taiwan ,Microbiology ,Hot Springs ,Comamonadaceae ,03 medical and health sciences ,Phylogenetics ,RNA, Ribosomal, 16S ,Botany ,Putrescine ,Hydrogenophaga ,Gene ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,Base Composition ,biology ,Phylogenetic tree ,Strain (chemistry) ,Fatty Acids ,Nucleic Acid Hybridization ,Sequence Analysis, DNA ,General Medicine ,biology.organism_classification ,16S ribosomal RNA ,Bacterial Typing Techniques ,030104 developmental biology ,Bacteria - Abstract
A polyphasic approach was used to characterize an aerobic, Gram-negative, rod-shaped bacterium (designated strain CC-KL-3T) isolated from a hot spring. Phylogenetic analyses based on 16S rRNA genes indicated that strain CC-KL-3T showed highest sequence similarity to Hydrogenophaga bisanensis (97.7 %) and Hydrogenophaga atypica (97.6 %) and lower sequence similarity to other species (less than 97.6 %). The levels of DNA–DNA relatedness between strain CC-KL-3T, H. bisanensis and H. atypica were estimated to be 13.0 and 8.7 % (the reciprocal value was 14.7 and 6.3 %). Strain CC-KL-3T was non-motile, without apparent flagella and able to grow between 15–42 °C (optimal 30 °С), pH 6.0–8.0 (optimal 7.0) and 0–2 % (w/v) NaCl (optimal 0 %). The DNA G+C content was 61.4 mol% and the major quinone system was ubiquinone (Q-8). The polyamine profile revealed the predominance of 2-hydroxyputrescine and putrescine and the dominant cellular fatty acids were C16 : 0 (28.9 %), C16 : 1ω7c/C16 : 1ω6c (41.4 %) and C18 : 1ω7c/C18 : 1ω6c (11.9 %). These data corroborated the affiliation of strain CC-KL-3T to the genus Hydrogenophaga . Based on the distinct phylogenetic, phenotypic and chemotaxonomic traits, and the results of comparative 16S rRNA gene sequence analysis, strain CC-KL-3T is considered to represent a novel species of the genus Hydrogenophaga , affiliated to the family Comamonadaceae , for which the name Hydrogenophaga aquatica sp. nov. is proposed. The type strain is CC-KL-3T (=BCRC 80937T=JCM 31216T).
- Published
- 2017