30 results on '"Charles D. Murin"'
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2. Structural Biology Illuminates Molecular Determinants of Broad Ebolavirus Neutralization by Human Antibodies for Pan-Ebolavirus Therapeutic Development
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Charles D. Murin, Pavlo Gilchuk, James E. Crowe, and Andrew B. Ward
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antibody ,Ebola virus ,structural biology ,antibody therapeutics ,filovirus and viral hemorrhagic fever ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Monoclonal antibodies (mAbs) have proven effective for the treatment of ebolavirus infection in humans, with two mAb-based drugs Inmazeb™ and Ebanga™ receiving FDA approval in 2020. While these drugs represent a major advance in the field of filoviral therapeutics, they are composed of antibodies with single-species specificity for Zaire ebolavirus. The Ebolavirus genus includes five additional species, two of which, Bundibugyo ebolavirus and Sudan ebolavirus, have caused severe disease and significant outbreaks in the past. There are several recently identified broadly neutralizing ebolavirus antibodies, including some in the clinical development pipeline, that have demonstrated broad protection in preclinical studies. In this review, we describe how structural biology has illuminated the molecular basis of broad ebolavirus neutralization, including details of common antigenic sites of vulnerability on the glycoprotein surface. We begin with a discussion outlining the history of monoclonal antibody therapeutics for ebolaviruses, with an emphasis on how structural biology has contributed to these efforts. Next, we highlight key structural studies that have advanced our understanding of ebolavirus glycoprotein structures and mechanisms of antibody-mediated neutralization. Finally, we offer examples of how structural biology has contributed to advances in anti-viral medicines and discuss what opportunities the future holds, including rationally designed next-generation therapeutics with increased potency, breadth, and specificity against ebolaviruses.
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- 2022
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3. Convergence of a common solution for broad ebolavirus neutralization by glycan cap-directed human antibodies
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Charles D. Murin, Pavlo Gilchuk, Philipp A. Ilinykh, Kai Huang, Natalia Kuzmina, Xiaoli Shen, Jessica F. Bruhn, Aubrey L. Bryan, Edgar Davidson, Benjamin J. Doranz, Lauren E. Williamson, Jeffrey Copps, Tanwee Alkutkar, Andrew I. Flyak, Alexander Bukreyev, James E. Crowe, Jr., and Andrew B. Ward
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ebolaviruses ,Ebola virus ,antibody therapeutics ,filoviruses ,glycan cap ,antibody ,Biology (General) ,QH301-705.5 - Abstract
Summary: Antibodies that target the glycan cap epitope on the ebolavirus glycoprotein (GP) are common in the adaptive response of survivors. A subset is known to be broadly neutralizing, but the details of their epitopes and basis for neutralization are not well understood. Here, we present cryoelectron microscopy (cryo-EM) structures of diverse glycan cap antibodies that variably synergize with GP base-binding antibodies. These structures describe a conserved site of vulnerability that anchors the mucin-like domains (MLDs) to the glycan cap, which we call the MLD anchor and cradle. Antibodies that bind to the MLD cradle share common features, including use of IGHV1-69 and IGHJ6 germline genes, which exploit hydrophobic residues and form β-hairpin structures to mimic the MLD anchor, disrupt MLD attachment, destabilize GP quaternary structure, and block cleavage events required for receptor binding. Our results provide a molecular basis for ebolavirus neutralization by broadly reactive glycan cap antibodies.
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- 2021
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4. Considerations of Antibody Geometric Constraints on NK Cell Antibody Dependent Cellular Cytotoxicity
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Charles D. Murin
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antibody ,ADCC ,NK cell ,structural biology ,antibody therapeutics ,immune synapse ,Immunologic diseases. Allergy ,RC581-607 - Abstract
It has been well-established that antibody isotype, glycosylation, and epitope all play roles in the process of antibody dependent cellular cytotoxicity (ADCC). For natural killer (NK) cells, these phenotypes are linked to cellular activation through interaction with the IgG receptor FcγRIIIa, a single pass transmembrane receptor that participates in cytoplasmic signaling complexes. Therefore, it has been hypothesized that there may be underlying spatial and geometric principles that guide proper assembly of an activation complex within the NK cell immune synapse. Further, synergy of antibody phenotypic properties as well as allosteric changes upon antigen binding may also play an as-of-yet unknown role in ADCC. Understanding these facets, however, remains hampered by difficulties associated with studying immune synapse dynamics using classical approaches. In this review, I will discuss relevant NK cell biology related to ADCC, including the structural biology of Fc gamma receptors, and how the dynamics of the NK cell immune synapse are being studied using innovative microscopy techniques. I will provide examples from the literature demonstrating the effects of spatial and geometric constraints on the T cell receptor complex and how this relates to intracellular signaling and the molecular nature of lymphocyte activation complexes, including those of NK cells. Finally, I will examine how the integration of high-throughput and “omics” technologies will influence basic NK cell biology research moving forward. Overall, the goal of this review is to lay a basis for understanding the development of drugs and therapeutic antibodies aimed at augmenting appropriate NK cell ADCC activity in patients being treated for a wide range of illnesses.
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- 2020
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5. Antibody Treatment of Ebola and Sudan Virus Infection via a Uniquely Exposed Epitope within the Glycoprotein Receptor-Binding Site
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Katie A. Howell, Xiangguo Qiu, Jennifer M. Brannan, Christopher Bryan, Edgar Davidson, Frederick W. Holtsberg, Anna Z. Wec, Sergey Shulenin, Julia E. Biggins, Robin Douglas, Sven G. Enterlein, Hannah L. Turner, Jesper Pallesen, Charles D. Murin, Shihua He, Andrea Kroeker, Hong Vu, Andrew S. Herbert, Marnie L. Fusco, Elisabeth K. Nyakatura, Jonathan R. Lai, Zhen-Yong Keck, Steven K.H. Foung, Erica Ollmann Saphire, Larry Zeitlin, Andrew B. Ward, Kartik Chandran, Benjamin J. Doranz, Gary P. Kobinger, John M. Dye, and M. Javad Aman
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Biology (General) ,QH301-705.5 - Abstract
Summary: Previous efforts to identify cross-neutralizing antibodies to the receptor-binding site (RBS) of ebolavirus glycoproteins have been unsuccessful, largely because the RBS is occluded on the viral surface. We report a monoclonal antibody (FVM04) that targets a uniquely exposed epitope within the RBS; cross-neutralizes Ebola (EBOV), Sudan (SUDV), and, to a lesser extent, Bundibugyo viruses; and shows protection against EBOV and SUDV in mice and guinea pigs. The antibody cocktail ZMapp™ is remarkably effective against EBOV (Zaire) but does not cross-neutralize other ebolaviruses. By replacing one of the ZMapp™ components with FVM04, we retained the anti-EBOV efficacy while extending the breadth of protection to SUDV, thereby generating a cross-protective antibody cocktail. In addition, we report several mutations at the base of the ebolavirus glycoprotein that enhance the binding of FVM04 and other cross-reactive antibodies. These findings have important implications for pan-ebolavirus vaccine development and defining broadly protective antibody cocktails. : Howell et al. examine a mAb, FVM04, that binds the ebolavirus receptor-binding site and find that FVM04 protects against EBOV and SUDV. When combined with two ZMapp™ components, the antibody cocktail retains EBOV protection similar to that of ZMapp™ and extends protection against SUDV. Specific glycoprotein mutations that enhance the exposure of cross-neutralizing epitopes are described.
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- 2016
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6. Structural Basis of Pan-Ebolavirus Neutralization by an Antibody Targeting the Glycoprotein Fusion Loop
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Charles D. Murin, Jessica F. Bruhn, Zachary A. Bornholdt, Jeffrey Copps, Robyn Stanfield, and Andrew B. Ward
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Biology (General) ,QH301-705.5 - Abstract
Summary: Monoclonal antibodies (mAbs) with pan-ebolavirus cross-reactivity are highly desirable, but development of such mAbs is limited by a lack of a molecular understanding of cross-reactive epitopes. The antibody ADI-15878 was previously identified from a human survivor of Ebola virus Makona variant (EBOV/Mak) infection. This mAb demonstrated potent neutralizing activity against all known ebolaviruses and provided protection in rodent and ferret models against three ebolavirus species. Here, we describe the unliganded crystal structure of ADI-15878 as well as the cryo-EM structures of ADI-15878 in complex with the EBOV/Mak and Bundibugyo virus (BDBV) glycoproteins (GPs). ADI-15878 binds through an induced-fit mechanism by targeting highly conserved residues in the internal fusion loop (IFL), bridging across GP protomers via the heptad repeat 1 (HR1) region. Our structures provide a more complete description of the ebolavirus immunogenic landscape, as well as a molecular basis for how rare but potent antibodies target conserved filoviral fusion machinery. : The threat of another major filoviral outbreaks looms, underlined by the current lack of approved vaccines or therapeutics. Murin et al. describe the molecular nature of neutralization by the human survivor pan-ebolavirus antibody ADI-15878. Their structures collectively provide a blueprint that can aid in the development of more potent pan-ebolavirus therapeutics. Keywords: Ebola virus, Bundibugyo virus, pan-filoviral, filovirus, antibody, glycoprotein
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- 2018
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7. Protective pan-ebolavirus combination therapy by two multifunctional human antibodies
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Robert H. Carnahan, Seth J. Zost, Charles D. Murin, Alexander Bukreyev, Viktoriya Borisevich, Philipp A. Ilinykh, Naveenchandra Suryadevara, Robert W. Cross, James E. Crowe, Thomas W. Geisbert, Rachel S. Nargi, Andrew B. Ward, Robin G. Bombardi, Joan B. Geisbert, Pavlo Gilchuk, Krystle N. Agans, Kai Huang, Natalia Kuzmina, and Rachel E. Sutton
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Ebolavirus ,chemistry.chemical_classification ,Ebola virus ,biology ,Combination therapy ,business.industry ,Effector ,medicine.drug_class ,medicine.disease_cause ,Monoclonal antibody ,Virology ,Neutralization ,chemistry ,medicine ,biology.protein ,Antibody ,business ,Glycoprotein - Abstract
Ebolaviruses cause a severe and often fatal illness with the potential for global spread. Monoclonal antibody-based treatments that have become available recently have a narrow therapeutic spectrum and are ineffective against ebolaviruses other than Ebola virus (EBOV), including medically important Bundibugyo (BDBV) and Sudan (SUDV) viruses. Here we report the development of a therapeutic cocktail comprising two broadly neutralizing human antibodies rEBOV-515 and rEBOV-442 that recognize non-overlapping sites on the ebolavirus glycoprotein (GP). Antibodies in the cocktail exhibited synergistic neutralizing activity and resisted viral escape, and they were optimized for their Fc-mediated effector function activities. The cocktail protected non-human primates from ebolavirus disease caused by EBOV, BDBV, or SUDV with high therapeutic effectiveness. High-resolution structures of the cocktail antibodies in complex with GP revealed the molecular determinants for neutralization breadth and potency. This study provides advanced preclinical data to support clinical development of this cocktail for pan-ebolavirus therapy.
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- 2021
8. Antibody responses to viral infections: a structural perspective across three different enveloped viruses
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Andrew B. Ward, Charles D. Murin, and Ian A. Wilson
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Microbiology (medical) ,medicine.drug_class ,Immunology ,Antibodies, Viral ,Monoclonal antibody ,Applied Microbiology and Biotechnology ,Microbiology ,Article ,03 medical and health sciences ,Immune system ,Antigen ,Viral life cycle ,Genetics ,medicine ,Animals ,Humans ,Neutralizing antibody ,030304 developmental biology ,0303 health sciences ,biology ,030306 microbiology ,Cell Biology ,Virology ,3. Good health ,Chronic infection ,Virus Diseases ,Antibody Formation ,Viruses ,Humoral immunity ,biology.protein ,Antibody - Abstract
Antibodies serve as critical barriers to viral infection. Humoral immunity to a virus is achieved through the dual role of antibodies in communicating the presence of invading pathogens in infected cells to effector cells, and in interfering with processes essential to the viral life cycle (chiefly entry into the host cell). For individuals that successfully control infection, virus-elicited antibodies can provide lifelong surveillance and protection from future insults. One approach to understand the nature of a successful immune response has been to utilize structural biology to uncover the molecular details of antibodies derived from vaccines or natural infection and how they interact with their cognate microbial antigens. The ability to isolate antigen-specific B-cells and rapidly solve structures of functional, monoclonal antibodies in complex with viral glycoprotein surface antigens has greatly expanded our knowledge of the sites of vulnerability on viruses. In this Review, we compare the adaptive humoral immune responses to human immunodeficiency virus (HIV), influenza and filoviruses, with a particular focus on neutralizing antibodies. The pathogenesis of each of these viruses is quite different, providing an opportunity for comparison of immune responses: HIV causes a persistent, chronic infection; influenza, an acute infection with multiple exposures during a lifetime and annual vaccination; filoviruses, a virulent, acute infection. Neutralizing antibodies that develop under these different constraints are therefore sentinels that can provide insight into the underlying humoral immune responses, as well as important lessons to guide future development of vaccines and immunotherapeutics. This Review summarizes recent advances in our understanding of neutralizing antibody responses to enveloped viruses with different pathogenesis and discusses how this information is used to inform design of vaccines, therapeutics and diagnostics.
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- 2019
9. Convergence of a common solution for broad ebolavirus neutralization by glycan cap-directed human antibodies
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Philipp A. Ilinykh, James E. Crowe, Xiaoli Shen, Alexander Bukreyev, Andrew I. Flyak, Pavlo Gilchuk, Charles D. Murin, Jessica F. Bruhn, Lauren E. Williamson, Aubrey L. Bryan, Jeffrey Copps, Andrew B. Ward, Tanwee Alkutkar, Natalia Kuzmina, Benjamin J. Doranz, Edgar Davidson, and Kai Huang
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Models, Molecular ,0301 basic medicine ,Antibodies, Viral ,medicine.disease_cause ,Epitope ,Neutralization ,Epitopes ,Jurkat Cells ,Mice ,Ebola virus ,0302 clinical medicine ,Viral Envelope Proteins ,Antibody Specificity ,antibody ,Biology (General) ,antibody therapeutics ,chemistry.chemical_classification ,biology ,Antibodies, Monoclonal ,Ebolavirus ,Female ,Antibody ,Protein Binding ,Glycan ,filoviruses ,medicine.drug_class ,QH301-705.5 ,Computational biology ,Monoclonal antibody ,complex mixtures ,Article ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Polysaccharides ,glycan cap ,medicine ,Animals ,Humans ,Protein Interaction Domains and Motifs ,Amino Acid Sequence ,Binding Sites ,Sequence Homology, Amino Acid ,Cryoelectron Microscopy ,ebolaviruses ,Hemorrhagic Fever, Ebola ,Antibodies, Neutralizing ,HEK293 Cells ,030104 developmental biology ,chemistry ,biology.protein ,Protein Conformation, beta-Strand ,Protein quaternary structure ,Glycoprotein ,Sequence Alignment ,030217 neurology & neurosurgery ,HeLa Cells - Abstract
SUMMARY Antibodies that target the glycan cap epitope on the ebolavirus glycoprotein (GP) are common in the adaptive response of survivors. A subset is known to be broadly neutralizing, but the details of their epitopes and basis for neutralization are not well understood. Here, we present cryoelectron microscopy (cryo-EM) structures of diverse glycan cap antibodies that variably synergize with GP base-binding antibodies. These structures describe a conserved site of vulnerability that anchors the mucin-like domains (MLDs) to the glycan cap, which we call the MLD anchor and cradle. Antibodies that bind to the MLD cradle share common features, including use of IGHV1–69 and IGHJ6 germline genes, which exploit hydrophobic residues and form β-hairpin structures to mimic the MLD anchor, disrupt MLD attachment, destabilize GP quaternary structure, and block cleavage events required for receptor binding. Our results provide a molecular basis for ebolavirus neutralization by broadly reactive glycan cap antibodies., In brief A rare subset of ebolavirus antibodies targeting the glycan cap are broadly neutralizing. Murin et al. report cryo-EM structures and custom in vitro assays identifying a conserved site of vulnerability in the glycan cap and detail mechanisms of action, including structural mimicry, trimer instability, and blocking cleavage., Graphical Abstract
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- 2021
10. Convergence of a common solution to broad ebolavirus neutralization by glycan cap directed human antibodies
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Philipp A. Ilinykh, James E. Crowe, Charles D. Murin, Jessica F. Bruhn, Alexander Bukreyev, Andrew I. Flyak, Kai Huang, Aubrey L. Bryan, Tanwee Alkutkar, Pavlo Gilchuk, Benjamin J. Doranz, Lauren E. Williamson, Natalia Kuzmina, Jeffrey Copps, Andrew B. Ward, Edgar Davidson, and Xiaoli Shen
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Ebolavirus ,chemistry.chemical_classification ,Glycan ,biology ,medicine.disease_cause ,complex mixtures ,Epitope ,Neutralization ,Cell biology ,chemistry ,medicine ,biology.protein ,Protein quaternary structure ,Antibody ,Glycoprotein ,Gene - Abstract
SummaryAntibodies that target the glycan cap epitope on ebolavirus glycoprotein (GP) are common in the adaptive response of survivors. A subset is known to be broadly neutralizing, but the details of their epitopes and basis for neutralization is not well-understood. Here we present cryo-electron microscopy (cryo-EM) structures of several glycan cap antibodies that variably synergize with GP base-binding antibodies. These structures describe a conserved site of vulnerability that anchors the mucin-like domains (MLD) to the glycan cap, which we name the MLD-anchor and cradle. Antibodies that bind to the MLD-cradle share common features, including the use of IGHV1-69 and IGHJ6 germline genes, which exploit hydrophobic residues and form beta-hairpin structures to mimic the MLD-anchor, disrupt MLD attachment, destabilize GP quaternary structure and block cleavage events required for receptor binding. Our results collectively provide a molecular basis for ebolavirus neutralization by broadly reactive glycan cap antibodies.
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- 2020
11. Structural Basis of Pan-Ebolavirus Neutralization by an Antibody Targeting the Glycoprotein Fusion Loop
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Zachary A. Bornholdt, Robyn L. Stanfield, Andrew B. Ward, Jeffrey Copps, Charles D. Murin, and Jessica F. Bruhn
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0301 basic medicine ,medicine.drug_class ,Viral protein ,viruses ,Biology ,medicine.disease_cause ,Monoclonal antibody ,Antibodies, Viral ,General Biochemistry, Genetics and Molecular Biology ,Epitope ,Protein Structure, Secondary ,Article ,03 medical and health sciences ,medicine ,Promoter Regions, Genetic ,lcsh:QH301-705.5 ,Glycoproteins ,Ebolavirus ,chemistry.chemical_classification ,Ebola virus ,Crystallography ,Cryoelectron Microscopy ,Filoviridae ,Virology ,Antibodies, Neutralizing ,Bundibugyo virus ,Heptad repeat ,030104 developmental biology ,chemistry ,lcsh:Biology (General) ,Glycoprotein - Abstract
Summary: Monoclonal antibodies (mAbs) with pan-ebolavirus cross-reactivity are highly desirable, but development of such mAbs is limited by a lack of a molecular understanding of cross-reactive epitopes. The antibody ADI-15878 was previously identified from a human survivor of Ebola virus Makona variant (EBOV/Mak) infection. This mAb demonstrated potent neutralizing activity against all known ebolaviruses and provided protection in rodent and ferret models against three ebolavirus species. Here, we describe the unliganded crystal structure of ADI-15878 as well as the cryo-EM structures of ADI-15878 in complex with the EBOV/Mak and Bundibugyo virus (BDBV) glycoproteins (GPs). ADI-15878 binds through an induced-fit mechanism by targeting highly conserved residues in the internal fusion loop (IFL), bridging across GP protomers via the heptad repeat 1 (HR1) region. Our structures provide a more complete description of the ebolavirus immunogenic landscape, as well as a molecular basis for how rare but potent antibodies target conserved filoviral fusion machinery. : The threat of another major filoviral outbreaks looms, underlined by the current lack of approved vaccines or therapeutics. Murin et al. describe the molecular nature of neutralization by the human survivor pan-ebolavirus antibody ADI-15878. Their structures collectively provide a blueprint that can aid in the development of more potent pan-ebolavirus therapeutics. Keywords: Ebola virus, Bundibugyo virus, pan-filoviral, filovirus, antibody, glycoprotein
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- 2018
12. Development of Clinical-Stage Human Monoclonal Antibodies That Treat Advanced Ebola Virus Disease in Nonhuman Primates
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Andrew B. Ward, Christos A. Kyratsous, Ricardo Carrion, Gabriella Worwa, William D. Pratt, Gang Chen, William C. Olson, Terra Potocky, Joel H. Martin, Karl J. Erlandson, John C. Trefry, Ashique Rafique, Peter W. Mason, Hilary M. Staples, Tammy T. Huang, Hannah L. Turner, Robert Babb, Drew Dudgeon, Leah Lipsich, Joshua D. Shamblin, Ying Yan, Yasuteru Sakurai, Thomas M Dreier, Manu Anantpadma, Kevin Yu, Marcela Torres, Sandra L. Bixler, Suzanne E. Wollen, Charles D. Murin, Neil Stahl, Justine M. Zelko, Melissa S Willis, Robert A. Davey, Darya Burakov, Jeanette L. Fairhurst, Ashok Badithe, Margaret L. Pitt, Franco Rossi, Taylor B. Chance, Kimberly Armstrong, and Kristen E. Pascal
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0301 basic medicine ,Male ,filovirus ,medicine.drug_class ,Guinea Pigs ,Supplement Articles ,Disease ,medicine.disease_cause ,Monoclonal antibody ,Antibodies, Viral ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Emerging infections ,Medicine ,Animals ,Humans ,Immunology and Allergy ,Glycoproteins ,Ebola virus ,biology ,business.industry ,Antibodies, Monoclonal ,Binding (Molecular Function) ,Hemorrhagic Fever, Ebola ,Virology ,Antibodies, Neutralizing ,Macaca mulatta ,Treatment ,030104 developmental biology ,HEK293 Cells ,Infectious Diseases ,biology.protein ,monoclonal antibodies ,Antibody ,business ,030217 neurology & neurosurgery ,EBOV - Abstract
Background For most classes of drugs, rapid development of therapeutics to treat emerging infections is challenged by the timelines needed to identify compounds with the desired efficacy, safety, and pharmacokinetic profiles. Fully human monoclonal antibodies (mAbs) provide an attractive method to overcome many of these hurdles to rapidly produce therapeutics for emerging diseases. Methods In this study, we deployed a platform to generate, test, and develop fully human antibodies to Zaire ebolavirus. We obtained specific anti-Ebola virus (EBOV) antibodies by immunizing VelocImmune mice that use human immunoglobulin variable regions in their humoral responses. Results Of the antibody clones isolated, 3 were selected as best at neutralizing EBOV and triggering FcγRIIIa. Binding studies and negative-stain electron microscopy revealed that the 3 selected antibodies bind to non-overlapping epitopes, including a potentially new protective epitope not targeted by other antibody-based treatments. When combined, a single dose of a cocktail of the 3 antibodies protected nonhuman primates (NHPs) from EBOV disease even after disease symptoms were apparent. Conclusions This antibody cocktail provides complementary mechanisms of actions, incorporates novel specificities, and demonstrates high-level postexposure protection from lethal EBOV disease in NHPs. It is now undergoing testing in normal healthy volunteers in preparation for potential use in future Ebola epidemics.
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- 2018
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13. Broadly neutralizing antibodies from human survivors target a conserved site in the Ebola virus glycoprotein HR2–MPER region
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Thomas G. Ksiazek, Alexander Bukreyev, Andrew I. Flyak, Erica Ollmann Saphire, Andrew B. Ward, Kai Huang, Philipp A. Ilinykh, Charles D. Murin, Rebecca Lampley, Hannah L. Turner, James E. Crowe, Christopher Bryan, Palaniappan Ramanathan, Edgar Davidson, Natalia Kuzmina, Hannah King, Nurgun Kose, Christopher P. Gulka, Xiaoli Shen, David W. Wright, Pavlo Gilchuk, Gopal Sapparapu, Benjamin J. Doranz, and Marnie L. Fusco
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Models, Molecular ,0301 basic medicine ,Microbiology (medical) ,medicine.drug_class ,Guinea Pigs ,Immunology ,Cross Reactions ,ZMapp ,Antibodies, Viral ,medicine.disease_cause ,Monoclonal antibody ,Applied Microbiology and Biotechnology ,Microbiology ,Article ,Epitope ,Virus ,Epitopes ,Mice ,Viral Proteins ,03 medical and health sciences ,Chlorocebus aethiops ,Genetics ,medicine ,Animals ,Humans ,Vero Cells ,Ebolavirus ,Binding Sites ,Membrane Glycoproteins ,Ebola virus ,biology ,Ferrets ,Cell Biology ,Hemorrhagic Fever, Ebola ,Antibodies, Neutralizing ,Virology ,Bundibugyo virus ,3. Good health ,030104 developmental biology ,biology.protein ,Rabbits ,Antibody ,Protein Binding ,medicine.drug - Abstract
Ebola virus (EBOV) in humans causes a severe illness with high mortality rates. Several strategies have been developed in the past to treat EBOV infection, including the antibody cocktail ZMapp, which has been shown to be effective in nonhuman primate models of infection 1 and has been used under compassionate-treatment protocols in humans 2 . ZMapp is a mixture of three chimerized murine monoclonal antibodies (mAbs)3-6 that target EBOV-specific epitopes on the surface glycoprotein7,8. However, ZMapp mAbs do not neutralize other species from the genus Ebolavirus, such as Bundibugyo virus (BDBV), Reston virus (RESTV) or Sudan virus (SUDV). Here, we describe three naturally occurring human cross-neutralizing mAbs, from BDBV survivors, that target an antigenic site in the canonical heptad repeat 2 (HR2) region near the membrane-proximal external region (MPER) of the glycoprotein. The identification of a conserved neutralizing antigenic site in the glycoprotein suggests that these mAbs could be used to design universal antibody therapeutics against diverse ebolavirus species. Furthermore, we found that immunization with a peptide comprising the HR2-MPER antigenic site elicits neutralizing antibodies in rabbits. Structural features determined by conserved residues in the antigenic site described here could inform an epitope-based vaccine design against infection caused by diverse ebolavirus species.
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- 2018
14. Pan-ebolavirus protective therapy by two multifunctional human antibodies
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Natalia Kuzmina, Robin G. Bombardi, Alexander Bukreyev, Robert H. Carnahan, Charles D. Murin, Seth J. Zost, Pavlo Gilchuk, Philipp A. Ilinykh, James E. Crowe, Rachel S. Nargi, Viktoriya Borisevich, Andrew B. Ward, Krystle N. Agans, Thomas W. Geisbert, Kai Huang, Naveenchandra Suryadevara, Rachel E. Sutton, Joan B. Geisbert, and Robert W. Cross
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Models, Molecular ,Primates ,medicine.drug_class ,Receptors, Fc ,Antibodies, Viral ,medicine.disease_cause ,Monoclonal antibody ,Article ,General Biochemistry, Genetics and Molecular Biology ,Neutralization ,Cell Line ,Epitopes ,medicine ,Animals ,Humans ,Amino Acid Sequence ,Viremia ,Glycoproteins ,Ebolavirus ,chemistry.chemical_classification ,Mice, Inbred BALB C ,Binding Sites ,Ebola virus ,biology ,Cryoelectron Microscopy ,Antibodies, Monoclonal ,Hemorrhagic Fever, Ebola ,Hydrogen-Ion Concentration ,Antibodies, Neutralizing ,Preclinical data ,Virology ,Recombinant Proteins ,Epitope mapping ,chemistry ,biology.protein ,Female ,Antibody ,Glycoprotein - Abstract
Ebolaviruses cause a severe and often fatal illness with the potential for global spread. Monoclonal antibody-based treatments that have become available recently have a narrow therapeutic spectrum and are ineffective against ebolaviruses other than Ebola virus (EBOV), including medically important Bundibugyo (BDBV) and Sudan (SUDV) viruses. Here, we report the development of a therapeutic cocktail comprising two broadly neutralizing human antibodies, rEBOV-515 and rEBOV-442, that recognize non-overlapping sites on the ebolavirus glycoprotein (GP). Antibodies in the cocktail exhibited synergistic neutralizing activity, resisted viral escape, and possessed differing requirements for their Fc-regions for optimal in vivo activities. The cocktail protected non-human primates from ebolavirus disease caused by EBOV, BDBV, or SUDV with high therapeutic effectiveness. High-resolution structures of the cocktail antibodies in complex with GP revealed the molecular determinants for neutralization breadth and potency. This study provides advanced preclinical data to support clinical development of this cocktail for pan-ebolavirus therapy.
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- 2021
15. Isolation of potent neutralizing antibodies from a survivor of the 2014 Ebola virus outbreak
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Joshua D. Shamblin, Wen Li, Kathleen B. J. Pommert, Mark S. Klempner, Ashley E. Piper, Thomas R. Sprague, Pamela J. Glass, Arthur J. Goff, Colby A. Souders, Keith A. Reimann, Andrew B. Ward, Laura M. Walker, Karl Dane Wittrup, Erica Ollmann Saphire, Dennis R. Burton, Heidi L. Smith, Charles D. Murin, Eric Krauland, Tillman U. Gerngross, Suzanne E. Wollen, Lisa A. Cavacini, Devin Sok, Hannah L. Turner, Marnie L. Fusco, and Zachary A. Bornholdt
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0301 basic medicine ,medicine.drug_class ,Antigen-Antibody Complex ,Antibodies, Viral ,medicine.disease_cause ,Monoclonal antibody ,Article ,Disease Outbreaks ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Viral Envelope Proteins ,medicine ,Animals ,Humans ,Survivors ,Ebola Vaccines ,Ebolavirus ,Multidisciplinary ,Ebola virus ,Ebola vaccine ,biology ,Immunization, Passive ,Virion ,Antibodies, Monoclonal ,Hemorrhagic Fever, Ebola ,Viral membrane ,Antibodies, Neutralizing ,Virology ,Tissue Donors ,Bundibugyo virus ,030104 developmental biology ,Immunization ,Antibody Formation ,Democratic Republic of the Congo ,biology.protein ,Antibody ,030217 neurology & neurosurgery - Abstract
Profiling the antibody response to Ebola The recent Ebola virus outbreak in West Africa illustrates the need not only for a vaccine but for potential therapies, too. One promising therapy is monoclonal antibodies that target Ebola's membrane-anchored glycoprotein (GP). Bornholdt et al. isolated and characterized 349 antibodies from a survivor of the 2014 outbreak. A large fraction showed some neutralizing activity and several were quite potent. Structural analysis revealed an important site of vulnerability on the membrane stalk region of GP. Antibodies targeting this area were therapeutically effective in Ebola virus–infected mice. Science , this issue p. 1078
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- 2016
16. Analysis of a Therapeutic Antibody Cocktail Reveals Determinants for Cooperative and Broad Ebolavirus Neutralization
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Sheng Li, Charles D. Murin, Kai Huang, George K. Lewis, Sean Hui, Morris Ibeawuchi, Megan E. Vodzak, Benjamin Ohiaeri, Benjamin J. Doranz, Robin G. Bombardi, Galit Alter, Erica Ollmann Saphire, Adaora Okoli, Chiara Orlandi, Chad E. Mire, Andrew B. Ward, Rachel S. Nargi, Edgar Davidson, Bronwyn M. Gunn, Hannah L. Turner, Aubrey L. Bryan, Natalia Kuzmina, Jacob C. Milligan, Robert H. Carnahan, Robin Flinko, Robert W. Cross, Pilar X. Altman, Pavlo Gilchuk, Alexander Bukreyev, Tanwee Alkutkar, Thomas W. Geisbert, Philipp A. Ilinykh, and James E. Crowe
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glycoprotein ,Male ,0301 basic medicine ,Protein Conformation ,cooperative neutralization ,antibody synergy ,Antibodies, Viral ,medicine.disease_cause ,Epitope ,Neutralization ,Epitopes ,Mice ,0302 clinical medicine ,Immunology and Allergy ,antibody therapeutics ,Mice, Inbred BALB C ,Antibodies, Monoclonal ,Ebolavirus ,3. Good health ,Molecular mimicry ,Infectious Diseases ,030220 oncology & carcinogenesis ,Drug Therapy, Combination ,Female ,Immunology ,Biology ,ebolavirus infection ,Article ,Virus ,Cell Line ,Immunoglobulin Fab Fragments ,03 medical and health sciences ,Antibody Repertoire ,medicine ,Animals ,Humans ,neutralizing antibodies ,Glycoproteins ,Ebola virus ,Molecular Mimicry ,Hemorrhagic Fever, Ebola ,Antibodies, Neutralizing ,Macaca mulatta ,Virology ,epitope mapping ,Disease Models, Animal ,030104 developmental biology ,Epitope mapping ,viral antibodies - Abstract
Summary Structural principles underlying the composition of protective antiviral monoclonal antibody (mAb) cocktails are poorly defined. Here, we exploited antibody cooperativity to develop a therapeutic mAb cocktail against Ebola virus. We systematically analyzed the antibody repertoire in human survivors and identified a pair of potently neutralizing mAbs that cooperatively bound to the ebolavirus glycoprotein (GP). High-resolution structures revealed that in a two-antibody cocktail, molecular mimicry was a major feature of mAb-GP interactions. Broadly neutralizing mAb rEBOV-520 targeted a conserved epitope on the GP base region. mAb rEBOV-548 bound to a glycan cap epitope, possessed neutralizing and Fc-mediated effector function activities, and potentiated neutralization by rEBOV-520. Remodeling of the glycan cap structures by the cocktail enabled enhanced GP binding and virus neutralization. The cocktail demonstrated resistance to virus escape and protected non-human primates (NHPs) against Ebola virus disease. These data illuminate structural principles of antibody cooperativity with implications for development of antiviral immunotherapeutics., Graphical Abstract, Highlights • Human mAbs of two epitope specificities bind cooperatively to the ebolavirus GP • Cooperativity is mediated by a mAb that enhances binding to a vulnerable GP epitope • A two-mAb cocktail exhibits enhanced potency against heterologous ebolaviruses • Two 30 mg/kg doses of the cocktail fully protected non-human primates (NHPs) challenged with EBOV, Cooperative interactions of monoclonal antibodies (mAbs) with viral antigens are poorly understood. Gilchuk et al. perform structural and functional analysis of cooperativity in a cocktail of two human mAbs, recognizing major epitopes of ebolavirus glycoprotein (GP), and define cooperative binding of the GP as a mechanism for enhanced ebolavirus neutralization.
- Published
- 2020
17. Antibodies from a Human Survivor Define Sites of Vulnerability for Broad Protection against Ebolaviruses
- Author
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Eileen C. Goodwin, Marc Antoine de La Vega, Russell R. Bakken, Andrew S. Herbert, Shihua He, Xiangguo Qiu, John M. Dye, Charles D. Murin, Zachary A. Bornholdt, J. Maximilian Fels, Wenjun Zhu, Andrew B. Ward, Rohit K. Jangra, Elisabeth K. Nyakatura, Kartik Chandran, Jonathan R. Lai, Anna Z. Wec, Laura M. Walker, Dafna M. Abelson, Larry Zeitlin, Rebekah M. James, and Hannah L. Turner
- Subjects
0301 basic medicine ,Models, Molecular ,medicine.drug_class ,030106 microbiology ,Cross Reactions ,medicine.disease_cause ,Monoclonal antibody ,Antibodies, Viral ,General Biochemistry, Genetics and Molecular Biology ,Epitope ,Article ,03 medical and health sciences ,Mice ,Immune system ,Viral entry ,Chlorocebus aethiops ,medicine ,Animals ,Humans ,Amino Acid Sequence ,Survivors ,Ebola Vaccines ,Vero Cells ,Ebolavirus ,Mice, Inbred BALB C ,Ebola virus ,biology ,Ferrets ,Antibodies, Monoclonal ,Hemorrhagic Fever, Ebola ,Virology ,Antibodies, Neutralizing ,Bundibugyo virus ,Kinetics ,030104 developmental biology ,biology.protein ,Female ,Antibody ,Sequence Alignment - Abstract
Experimental monoclonal antibody (mAb) therapies have shown promise for treatment of lethal Ebola virus (EBOV) infections, but their species-specific recognition of the viral glycoprotein (GP) has limited their use against other divergent ebolaviruses associated with human disease. Here, we mined the human immune response to natural EBOV infection and identified mAbs with exceptionally potent pan-ebolavirus neutralizing activity and protective efficacy against three virulent ebolaviruses. These mAbs recognize an inter-protomer epitope in the GP fusion loop, a critical and conserved element of the viral membrane fusion machinery, and neutralize viral entry by targeting a proteolytically primed, fusion-competent GP intermediate (GPCL) generated in host cell endosomes. Only a few somatic hypermutations are required for broad antiviral activity, and germline-approximating variants display enhanced GPCL recognition, suggesting that such antibodies could be elicited more efficiently with suitably optimized GP immunogens. Our findings inform the development of both broadly effective immunotherapeutics and vaccines against filoviruses.
- Published
- 2017
18. Asymmetric recognition of the HIV-1 trimer by broadly neutralizing antibody PG9
- Author
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Albert Cupo, Jeong Hyun Lee, Ronald Derking, Michael J. Caulfield, Andre J. Marozsan, Simon Hoffenberg, C. Richter King, Rogier W. Sanders, John P. Moore, Per Johan Klasse, Andrew B. Ward, Charles D. Murin, Ian A. Wilson, Jean-Philippe Julien, Amsterdam institute for Infection and Immunity, and Medical Microbiology and Infection Prevention
- Subjects
Glycan ,Molecular model ,Trimer ,Protomer ,Biology ,HIV Antibodies ,Epitope ,Cell Line ,03 medical and health sciences ,Epitopes ,Protein structure ,X-Ray Diffraction ,Humans ,Protein Structure, Quaternary ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,Multidisciplinary ,030302 biochemistry & molecular biology ,env Gene Products, Human Immunodeficiency Virus ,Antibodies, Monoclonal ,Isothermal titration calorimetry ,Biological Sciences ,Molecular biology ,Antibodies, Neutralizing ,3. Good health ,Protein Structure, Tertiary ,chemistry ,biology.protein ,Biophysics ,HIV-1 ,Protein Multimerization ,Glycoprotein - Abstract
PG9 is the founder member of an expanding family of glycan-dependent human antibodies that preferentially bind the HIV (HIV-1) envelope (Env) glycoprotein (gp) trimer and broadly neutralize the virus. Here, we show that a soluble SOSIP.664 gp140 trimer constructed from the Clade A BG505 sequence binds PG9 with high affinity (similar to 11 nM), enabling structural and biophysical characterizations of the PG9:Env trimer complex. The BG505 SOSIP.664 gp140 trimer is remarkably stable as assessed by electron microscopy (EM) and differential scanning calorimetry. EM, small angle X-ray scattering, size exclusion chromatography with inline multiangle light scattering and isothermal titration calorimetry all indicate that only a single PG9 fragment antigen-binding (Fab) binds to the Env trimer. An similar to 18 angstrom EM reconstruction demonstrates that PG9 recognizes the trimer asymmetrically at its apex via contact with two of the three gp120 protomers, possibly contributing to its reported preference for a quaternary epitope. Molecular modeling and isothermal titration calorimetry binding experiments with an engineered PG9 mutant suggest that, in addition to the N156 and N160 glycan interactions observed in crystal structures of PG9 with a scaffolded V1/V2 domain, PG9 makes secondary interactions with an N160 glycan from an adjacent gp120 protomer in the antibody-trimer complex. Together, these structural and biophysical findings should facilitate the design of HIV-1 immunogens that possess all elements of the quaternary PG9 epitope required to induce broadly neutralizing antibodies against this region
- Published
- 2013
19. Antibody treatment of Ebola and Sudan virus infection via a uniquely exposed epitope within the glycoprotein receptor-binding site
- Author
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Robin Douglas, Julia E. Biggins, Frederick W. Holtsberg, M. Javad Aman, Hong Vu, Gary P. Kobinger, Sven Enterlein, Andrea Kroeker, John M. Dye, Hannah L. Turner, Andrew S. Herbert, Steven K. H. Foung, Jesper Pallesen, Andrew B. Ward, Edgar Davidson, Shihua He, Elisabeth K. Nyakatura, Kartik Chandran, Erica Ollmann Saphire, Xiangguo Qiu, Charles D. Murin, Jonathan R. Lai, Jennifer M. Brannan, Zhen Yong Keck, Anna Z. Wec, Christopher Bryan, Sergey Shulenin, Marnie L. Fusco, Katie A. Howell, Benjamin J. Doranz, and Larry Zeitlin
- Subjects
0301 basic medicine ,Models, Molecular ,medicine.drug_class ,030106 microbiology ,Guinea Pigs ,Biology ,medicine.disease_cause ,Monoclonal antibody ,Antibodies, Viral ,Negative Staining ,General Biochemistry, Genetics and Molecular Biology ,Virus ,Epitope ,Article ,03 medical and health sciences ,Epitopes ,Neutralization Tests ,medicine ,Animals ,Humans ,Amino Acid Sequence ,Binding site ,lcsh:QH301-705.5 ,Glycoproteins ,chemistry.chemical_classification ,Ebolavirus ,Mice, Inbred BALB C ,Ebola virus ,Binding Sites ,Antibodies, Monoclonal ,Hemorrhagic Fever, Ebola ,Virology ,Antibodies, Neutralizing ,3. Good health ,Disease Models, Animal ,Kinetics ,030104 developmental biology ,HEK293 Cells ,Treatment Outcome ,chemistry ,lcsh:Biology (General) ,Mutation ,biology.protein ,Receptors, Virus ,Female ,Antibody ,Glycoprotein - Abstract
Summary: Previous efforts to identify cross-neutralizing antibodies to the receptor-binding site (RBS) of ebolavirus glycoproteins have been unsuccessful, largely because the RBS is occluded on the viral surface. We report a monoclonal antibody (FVM04) that targets a uniquely exposed epitope within the RBS; cross-neutralizes Ebola (EBOV), Sudan (SUDV), and, to a lesser extent, Bundibugyo viruses; and shows protection against EBOV and SUDV in mice and guinea pigs. The antibody cocktail ZMapp™ is remarkably effective against EBOV (Zaire) but does not cross-neutralize other ebolaviruses. By replacing one of the ZMapp™ components with FVM04, we retained the anti-EBOV efficacy while extending the breadth of protection to SUDV, thereby generating a cross-protective antibody cocktail. In addition, we report several mutations at the base of the ebolavirus glycoprotein that enhance the binding of FVM04 and other cross-reactive antibodies. These findings have important implications for pan-ebolavirus vaccine development and defining broadly protective antibody cocktails. : Howell et al. examine a mAb, FVM04, that binds the ebolavirus receptor-binding site and find that FVM04 protects against EBOV and SUDV. When combined with two ZMapp™ components, the antibody cocktail retains EBOV protection similar to that of ZMapp™ and extends protection against SUDV. Specific glycoprotein mutations that enhance the exposure of cross-neutralizing epitopes are described.
- Published
- 2016
20. CROSS-REACTIVE AND POTENT NEUTRALIZING ANTIBODY RESPONSES IN HUMAN SURVIVORS OF NATURAL EBOLAVIRUS INFECTION
- Author
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Benjamin J. Doranz, Marnie L. Fusco, Thomas G. Ksiazek, Erica Ollmann Saphire, Xiaoli Shen, Joshua A. David, Hannah L. Turner, Rebecca Lampley, Leland Brown, Gopal Sapparapu, Natalia Kuzmina, Andrew B. Ward, Edgar Davidson, Charles D. Murin, Christopher Bryan, Hannah King, Andre Branchizio, James C. Slaughter, Nurgun Kose, Alexander Bukreyev, Andrew I. Flyak, Philipp A. Ilinykh, James E. Crowe, and Curtis Klages
- Subjects
0301 basic medicine ,Models, Molecular ,Guinea Pigs ,Biology ,Cross Reactions ,medicine.disease_cause ,General Biochemistry, Genetics and Molecular Biology ,Virus ,Epitope ,Article ,03 medical and health sciences ,Mice ,Antigen ,medicine ,Animals ,Humans ,Uganda ,Survivors ,Neutralizing antibody ,Ebolavirus ,Mice, Inbred BALB C ,Ebola virus ,Biochemistry, Genetics and Molecular Biology(all) ,Antibodies, Monoclonal ,Hemorrhagic Fever, Ebola ,Virology ,Antibodies, Neutralizing ,Bundibugyo virus ,3. Good health ,Disease Models, Animal ,Microscopy, Electron ,030104 developmental biology ,Epitope mapping ,Mutagenesis ,biology.protein ,Epitope Mapping - Abstract
Recent studies have suggested that antibody-mediated protection against the Ebolaviruses may be achievable, but little is known about whether or not antibodies can confer cross-reactive protection against viruses belonging to diverse Ebolavirus species, such as Ebola virus (EBOV), Sudan virus (SUDV), and Bundibugyo virus (BDBV). We isolated a large panel of human monoclonal antibodies (mAbs) against BDBV glycoprotein (GP) using peripheral blood B cells from survivors of the 2007 BDBV outbreak in Uganda. We determined that a large proportion of mAbs with potent neutralizing activity against BDBV bind to the glycan cap and recognize diverse epitopes within this major antigenic site. We identified several glycan cap-specific mAbs that neutralized multiple ebolaviruses, including SUDV, and a cross-reactive mAb that completely protected guinea pigs from the lethal challenge with heterologous EBOV. Our results provide a roadmap to develop a single antibody-based treatment effective against multiple Ebolavirus infections.
- Published
- 2016
21. Expression Vectors for Acinetobacter baylyi ADP1
- Author
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Anton V. Bryksin, Charles D. Murin, Ichiro Matsumura, and Kristy Segal
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DNA, Bacterial ,Genetic Vectors ,Molecular Sequence Data ,ved/biology.organism_classification_rank.species ,Biology ,Polymerase Chain Reaction ,Applied Microbiology and Biotechnology ,Genome ,Plasmid ,Bacterial Proteins ,Methods ,Vector (molecular biology) ,Cloning, Molecular ,Model organism ,Gene ,Glucuronidase ,Genetics ,Expression vector ,Acinetobacter ,Base Sequence ,Ecology ,ved/biology ,Chromosome ,Genetic Engineering ,Homologous recombination ,Plasmids ,Food Science ,Biotechnology - Abstract
Acinetobacter baylyi ADP1 is naturally competent and proficient at homologous recombination, so it can be transformed without restriction digests or ligation reactions. Expression vectors for this system, however, are not yet widely available. Here we describe the construction and characterization of inducible expression vectors that replicate as plasmids in A. baylyi or integrate into a nonessential part of its chromosome. These tools will facilitate the engineering of genes and genomes in this promising model organism.
- Published
- 2012
22. Systematic Analysis of Monoclonal Antibodies against Ebola Virus GP Defines Features that Contribute to Protection
- Author
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Kshitiji Wagh, Hannah L. Turner, M. Javad Aman, Alain Townsend, George Georgiou, Florian Krammer, Christos A. Kyratsous, Andrew B. Ward, Laura M. Walker, Michael H. Pauly, Viktor E. Volchkov, Peter Halfmann, Bette T. Korber, James E. Crowe, Shihua He, Jesper Pallesen, Alexander Bukreyev, Pramila Rijal, Edgar Davidson, Bronwyn M. Gunn, Charles D. Murin, Jonathan R. Lai, Ayato Takada, Dennis R. Burton, Anna Z. Wec, Gary P. Kobinger, Benjamin J. Doranz, Rafi Ahmed, Erica Ollmann Saphire, Xiangguo Qiu, Carl W. Davis, Tyler B. Krause, Kathleen B. J. Pommert, Cory Nykiforuk, Yoshihiro Kawaoka, Sharon L. Schendel, John M. Dye, Elena E. Giorgi, Karthik Gangavarapu, James Theiler, Larry Zeitlin, Marnie L. Fusco, Kristian G. Andersen, Cheng-I Wang, Jennifer M. Brannan, Andrew S. Herbert, Galit Alter, and Kartik Chandran
- Subjects
0301 basic medicine ,medicine.drug_class ,Biology ,medicine.disease_cause ,Monoclonal antibody ,Article ,General Biochemistry, Genetics and Molecular Biology ,Neutralization ,Epitope ,Natural killer cell ,Epitopes ,Mice ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Animals ,chemistry.chemical_classification ,Mice, Inbred BALB C ,Membrane Glycoproteins ,Ebola virus ,Antibodies, Monoclonal ,Hemorrhagic Fever, Ebola ,Viral membrane ,Ebolavirus ,Virology ,Treatment Outcome ,030104 developmental biology ,medicine.anatomical_structure ,chemistry ,biology.protein ,Female ,Immunization ,Antibody ,Glycoprotein ,030217 neurology & neurosurgery - Abstract
Antibodies are promising post-exposure therapies against emerging viruses, but which antibody features and in vitro assays best forecast protection are unclear. Our international consortium systematically evaluated antibodies against Ebola virus (EBOV) using multidisciplinary assays. For each antibody, we evaluated epitopes recognized on the viral surface glycoprotein (GP) and secreted glycoprotein (sGP), readouts of multiple neutralization assays, fraction of virions left un-neutralized, glycan structures, phagocytic and natural killer cell functions elicited, and in vivo protection in a mouse challenge model. Neutralization and induction of multiple immune effector functions (IEFs) correlated most strongly with protection. Neutralization predominantly occurred via epitopes maintained on endosomally cleaved GP, whereas maximal IEF mapped to epitopes farthest from the viral membrane. Unexpectedly, sGP cross-reactivity did not significantly influence in vivo protection. This comprehensive dataset provides a rubric to evaluate novel antibodies and vaccine responses and a roadmap for therapeutic development for EBOV and related viruses.
- Published
- 2018
23. Protective mAbs and Cross-Reactive mAbs Raised by Immunization with Engineered Marburg Virus GPs
- Author
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Do H. Kim, Erica Ollmann Saphire, Frederick W. Holtsberg, Hong Vu, Julia E. Biggins, Sheng Li, Takao Hashiguchi, Robyn Cassan, Jody D. Berry, Cory Nykiforuk, M. Javad Aman, Kevin J. Whaley, Marnie L. Fusco, Kelly L. Warfield, Gene G. Olinger, Larry Zeitlin, Sergey Shulenin, Andrew B. Ward, and Charles D. Murin
- Subjects
Male ,lcsh:Immunologic diseases. Allergy ,medicine.drug_class ,viruses ,Immunology ,Cross Reactions ,medicine.disease_cause ,Monoclonal antibody ,Antibodies, Viral ,Microbiology ,Epitope ,Marburg virus ,Marburg virus disease ,Virology ,Genetics ,medicine ,Animals ,Marburg Virus Disease ,Molecular Biology ,lcsh:QH301-705.5 ,Ebolavirus ,Mice, Inbred BALB C ,Ebola virus ,biology ,Antibodies, Monoclonal ,Correction ,Hemorrhagic Fever, Ebola ,Marburgvirus ,biology.organism_classification ,3. Good health ,lcsh:Biology (General) ,Vesicular stomatitis virus ,Parasitology ,Female ,Immunization ,lcsh:RC581-607 ,Research Article - Abstract
The filoviruses, which include the marburg- and ebolaviruses, have caused multiple outbreaks among humans this decade. Antibodies against the filovirus surface glycoprotein (GP) have been shown to provide life-saving therapy in nonhuman primates, but such antibodies are generally virus-specific. Many monoclonal antibodies (mAbs) have been described against Ebola virus. In contrast, relatively few have been described against Marburg virus. Here we present ten mAbs elicited by immunization of mice using recombinant mucin-deleted GPs from different Marburg virus (MARV) strains. Surprisingly, two of the mAbs raised against MARV GP also cross-react with the mucin-deleted GP cores of all tested ebolaviruses (Ebola, Sudan, Bundibugyo, Reston), but these epitopes are masked differently by the mucin-like domains themselves. The most efficacious mAbs in this panel were found to recognize a novel “wing” feature on the GP2 subunit that is unique to Marburg and does not exist in Ebola. Two of these anti-wing antibodies confer 90 and 100% protection, respectively, one hour post-exposure in mice challenged with MARV., Author Summary The filoviruses have caused multiple outbreaks among humans this decade, including a 90% lethal outbreak of Marburg virus in Angola and a significant, sustained outbreak of Ebola virus in West Africa. The viral surface glycoprotein (GP), which enables filoviruses to infect host cells, is the primary target of the immune system. Antibodies that target filovirus GP have been shown to provide life-saving therapy in nonhuman primates. However, the majority of known antibodies are only reactive against Ebola virus and not other emerging filoviruses. In this study, we present ten antibodies against Marburg virus, elicited by immunization of mice using engineered forms of its GP. Surprisingly, two antibodies exhibit some cross-reactivity to ebolaviruses (including species Ebola, Sudan, Bundibugyo, Reston). Other antibodies in this panel recognize a novel “wing” feature on a portion of GP that is unique to Marburg and does not exist in ebolaviruses, and protect 90%-100% of mice from lethal exposure. These antibodies, and their structural and functional analysis presented here, illuminate directions forward for therapeutics against Marburg virus.
- Published
- 2015
24. Structures of protective antibodies reveal sites of vulnerability on Ebola virus
- Author
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Erica Ollmann Saphire, Xiangguo Qiu, Gary P. Kobinger, Zachary A. Bornholdt, Charles D. Murin, Andrew B. Ward, Marnie L. Fusco, Larry Zeitlin, and Gene G. Olinger
- Subjects
Models, Molecular ,medicine.drug_class ,viruses ,Antibody Affinity ,ZMapp ,medicine.disease_cause ,Monoclonal antibody ,Antibodies, Viral ,Epitope ,Cell Line ,Epitopes ,Immunoglobulin Fab Fragments ,Viral Proteins ,Antibody Specificity ,medicine ,Animals ,Glycoproteins ,Ebolavirus ,Multidisciplinary ,Ebola virus ,biology ,virus diseases ,Antibodies, Monoclonal ,Biological Sciences ,Hemorrhagic Fever, Ebola ,Virology ,Bundibugyo virus ,Protein Structure, Tertiary ,Microscopy, Electron ,Immunology ,biology.protein ,Lethality ,Binding Sites, Antibody ,Antibody ,medicine.drug - Abstract
Ebola virus (EBOV) and related filoviruses cause severe hemorrhagic fever, with up to 90% lethality, and no treatments are approved for human use. Multiple recent outbreaks of EBOV and the likelihood of future human exposure highlight the need for pre- and postexposure treatments. Monoclonal antibody (mAb) cocktails are particularly attractive candidates due to their proven postexposure efficacy in nonhuman primate models of EBOV infection. Two candidate cocktails, MB-003 and ZMAb, have been extensively evaluated in both in vitro and in vivo studies. Recently, these two therapeutics have been combined into a new cocktail named ZMapp, which showed increased efficacy and has been given compassionately to some human patients. Epitope information and mechanism of action are currently unknown for most of the component mAbs. Here we provide single-particle EM reconstructions of every mAb in the ZMapp cocktail, as well as additional antibodies from MB-003 and ZMAb. Our results illuminate key and recurring sites of vulnerability on the EBOV glycoprotein and provide a structural rationale for the efficacy of ZMapp. Interestingly, two of its components recognize overlapping epitopes and compete with each other for binding. Going forward, this work now provides a basis for strategic selection of next-generation antibody cocktails against Ebola and related viruses and a model for predicting the impact of ZMapp on potential escape mutations in ongoing or future Ebola outbreaks.
- Published
- 2014
25. Structure of 2G12 Fab2 in complex with soluble and fully glycosylated HIV-1 Env by negative-stain single-particle electron microscopy
- Author
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Devin Sok, Dennis R. Burton, Robyn L. Stanfield, Andrew B. Ward, Jean-Philippe Julien, Ian A. Wilson, John P. Moore, Reza Khayat, Charles D. Murin, and Albert Cupo
- Subjects
Glycan ,Macromolecular Substances ,Immunology ,Plasma protein binding ,Computational biology ,Biology ,HIV Antibodies ,Microbiology ,Epitope ,Immunoglobulin Fab Fragments ,Virology ,Image Processing, Computer-Assisted ,Protein Interaction Domains and Motifs ,Binding site ,Ternary complex ,Staining and Labeling ,Structure and Assembly ,env Gene Products, Human Immunodeficiency Virus ,Lipid bilayer fusion ,Negative stain ,Antibodies, Neutralizing ,Microscopy, Electron ,Insect Science ,biology.protein ,Protein Multimerization ,Protein Binding - Abstract
The neutralizing anti-HIV-1 antibody 2G12 is of particular interest due to the sterilizing protection it provides from viral challenge in animal models. 2G12 is a unique, domain-exchanged antibody that binds exclusively to conserved N-linked glycans that form the high-mannose patch on the gp120 outer domain centered on a glycan at position N332. Several glycans in and around the 2G12 epitope have been shown to interact with other potent, broadly neutralizing antibodies; therefore, this region constitutes a supersite of vulnerability on gp120. While crystal structures of 2G12 and 2G12 bound to high-mannose glycans have been solved, no structural information that describes the interaction of 2G12 with gp120 or the Env trimer is available. Here, we present a negative-stain single-particle electron microscopy reconstruction of 2G12 Fab 2 in complex with a soluble, trimeric Env at ∼17-Å resolution that reveals the antibody's interaction with its native and fully glycosylated epitope. We also mapped relevant glycans in this epitope by fitting high-resolution crystal structures and by performing neutralization assays of glycan knockouts. In addition, a reconstruction at ∼26 Å of the ternary complex formed by 2G12 Fab 2 , soluble CD4, and Env indicates that 2G12 may block membrane fusion by induced steric hindrance upon primary receptor binding, thereby abrogating Env's interaction with coreceptor(s). These structures provide a basis for understanding 2G12 binding and neutralization, and our low-resolution model and glycan assignments provide a basis for higher-resolution studies to determine the molecular nature of the 2G12 epitope. IMPORTANCE HIV-1 is a human virus that results in the deaths of millions of people around the world each year. While there are several effective therapeutics available to prolong life, a vaccine is the best long-term solution for curbing this global epidemic. Here, we present structural data that reveal the viral binding site of one of the first HIV-1-neutralizing antibodies isolated, 2G12, and provide a rationale for its effectiveness. These structures provide a basis for higher-resolution studies to determine the molecular nature of the 2G12 epitope, which will aid in vaccine design and antibody-based therapies.
- Published
- 2014
26. Supersite of immune vulnerability on the glycosylated face of HIV-1 envelope glycoprotein gp120
- Author
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Ten Feizi, Andrew B. Ward, Henry Tien, Dennis R. Burton, Jean-Philippe Julien, Simon Hoffenberg, Marc C. Deller, Albert Cupo, James C. Paulson, Charles D. Murin, Yan Liu, Andre J. Marozsan, Yuanzi Hua, Katie J. Doores, Michael J. Caulfield, Leopold Kong, Ian A. Wilson, Ryan McBride, Per Johan Klasse, John P. Moore, Rogier W. Sanders, Jeong Hyun Lee, Thomas Clayton, Robyn L. Stanfield, Reza Khayat, Khoa Le, C. Richter King, AII - Amsterdam institute for Infection and Immunity, and Medical Microbiology and Infection Prevention
- Subjects
Models, Molecular ,Glycosylation ,Protein Conformation ,Amino Acid Motifs ,HIV Antibodies ,HIV Envelope Protein gp120 ,Crystallography, X-Ray ,Epitope ,Antigen-Antibody Reactions ,chemistry.chemical_compound ,Epitopes ,0302 clinical medicine ,Protein structure ,Biopolymers ,Structural Biology ,chemistry.chemical_classification ,0303 health sciences ,biology ,Glycobiology ,Immunoglobulin Fab Fragments ,env Gene Products, Human Immunodeficiency Virus ,3. Good health ,Cell biology ,Molecular Docking Simulation ,Carbohydrate Sequence ,CD4 Antigens ,Glycan ,1-Deoxynojirimycin ,Molecular Sequence Data ,Article ,03 medical and health sciences ,Structure-Activity Relationship ,Alkaloids ,Polysaccharides ,Humans ,Amino Acid Sequence ,Binding site ,Molecular Biology ,030304 developmental biology ,Virology ,Antibodies, Neutralizing ,Microscopy, Electron ,HEK293 Cells ,chemistry ,biology.protein ,Binding Sites, Antibody ,Glycoprotein ,Protein Processing, Post-Translational ,030215 immunology - Abstract
A substantial proportion of the broadly neutralizing antibodies (bnAbs) identified in certain HIV-infected donors recognize glycan-dependent epitopes on HIV-1 gp120. Here we elucidate how the bnAb PGT 135 binds its Asn332 glycan-dependent epitope from its 3.1-angstrom crystal structure with gp120, CD4 and Fab 17b. PGT 135 interacts with glycans at Asn332, Asn392 and Asn386, using long CDR loops H1 and H3 to penetrate the glycan shield and access the gp120 protein surface. EM reveals that PGT 135 can accommodate the conformational and chemical diversity of gp120 glycans by altering its angle of engagement. Combined structural studies of PGT 135, PGT 128 and 2G12 show that this Asn332-dependent antigenic region is highly accessible and much more extensive than initially appreciated, which allows for multiple binding modes and varied angles of approach; thereby it represents a supersite of vulnerability for antibody neutralization
- Published
- 2012
27. Structures of Ebola Virus GP and sGP in Complex with Therapeutic Antibodies
- Author
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Andrew I. Flyak, Kathryn M. Hastie, Larry Zeitlin, Marnie L. Fusco, Natalia de Val, Erica Ollmann Saphire, James E. Crowe, Kristian G. Andersen, Christopher A. Cottrell, Hannah L. Turner, Andrew B. Ward, Charles D. Murin, and Jesper Pallesen
- Subjects
0301 basic medicine ,Microbiology (medical) ,Immunology ,Cross Reactions ,medicine.disease_cause ,Applied Microbiology and Biotechnology ,Microbiology ,Epitope ,Article ,03 medical and health sciences ,Epitopes ,Viral Proteins ,0302 clinical medicine ,VP40 ,Genetics ,medicine ,Humans ,Amino Acid Sequence ,Peptide sequence ,Glycoproteins ,Ebolavirus ,chemistry.chemical_classification ,Ebola virus ,Membrane Glycoproteins ,biology ,Cryoelectron Microscopy ,Antibodies, Monoclonal ,Cell Biology ,Hemorrhagic Fever, Ebola ,Entry into host ,Virology ,3. Good health ,Models, Structural ,030104 developmental biology ,chemistry ,Antibody Formation ,Mutation ,biology.protein ,Antibody ,Protein Multimerization ,Glycoprotein ,Sequence Alignment ,030217 neurology & neurosurgery - Abstract
The Ebola virus (EBOV) GP gene encodes two glycoproteins. The major product is a soluble, dimeric glycoprotein (sGP) that is secreted abundantly. Despite the abundance of sGP during infection, little is known regarding its structure or functional role. A minor product, resulting from transcriptional editing, is the transmembrane-anchored, trimeric viral surface glycoprotein (GP). GP mediates attachment to and entry into host cells, and is the intended target of antibody therapeutics. Because large portions of sequence are shared between GP and sGP, it has been hypothesized that sGP may potentially subvert the immune response or may contribute to pathogenicity. In this study, we present cryo-electron microscopy structures of GP and sGP in complex with GP-specific and GP/sGP cross-reactive antibodies undergoing human clinical trials. The structure of the sGP dimer presented here, in complex with both an sGP-specific antibody and a GP/sGP cross-reactive antibody, permits us to unambiguously assign the oligomeric arrangement of sGP and compare its structure and epitope presentation to those of GP. We also provide biophysical evaluation of naturally occurring GP/sGP mutations that fall within the footprints identified by our high-resolution structures. Taken together, our data provide a detailed and more complete picture of the accessible Ebolavirus glycoprotein landscape and a structural basis to evaluate patient and vaccine antibody responses towards differently structured products of the GP gene.
- Published
- 2016
28. Correction: Protective mAbs and Cross-Reactive mAbs Raised by Immunization with Engineered Marburg Virus GPs
- Author
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Marnie L. Fusco, Erica Ollmann Saphire, Charles D. Murin, Do H. Kim, Julia E. Biggins, Hong Vu, Jody D. Berry, Larry Zeitlin, Frederick W. Holtsberg, Gene G. Olinger, Kelly L. Warfield, Sheng Li, Kevin J. Whaley, Andrew B. Ward, Cory Nykiforuk, Robyn Cassan, Takao Hashiguchi, M. Javad Aman, and Sergey Shulenin
- Subjects
lcsh:Immunologic diseases. Allergy ,medicine.medical_specialty ,business.industry ,Published Erratum ,Immunology ,Microbiology ,Marburg virus ,lcsh:Biology (General) ,Immunization ,Virology ,Family medicine ,Genetics ,Correct name ,Medicine ,Parasitology ,lcsh:RC581-607 ,business ,lcsh:QH301-705.5 ,Molecular Biology - Abstract
There is an error in the 18th author's name; the middle initial is missing. The correct name is Jody D. Berry. This author's affiliation is also incorrect. The correct affiliation is: Cangene Corp, now a subsidiary of Emergent Biosolutions. Winnipeg, Manitoba, Canada. This author's current address is: Proteos, Inc., Kalamazoo, MI
- Published
- 2015
29. Mechanism of Human Antibody-Mediated Neutralization of Marburg Virus
- Author
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Charles D. Murin, Xiaoli Shen, Erica Ollmann Saphire, Gopal Sapparapu, Alexander Bukreyev, Andrew I. Flyak, Zachary A. Bornholdt, Curtis Klages, Marnie L. Fusco, Thomas G. Ksiazek, Takao Hashiguchi, Philipp A. Ilinykh, James E. Crowe, Tania Garron, Andrew B. Ward, and James C. Slaughter
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Adult ,Models, Molecular ,Antigen-Antibody Complex ,Biology ,Antibodies, Viral ,medicine.disease_cause ,Article ,General Biochemistry, Genetics and Molecular Biology ,Virus ,Neutralization ,Marburg virus ,Immunoglobulin Fab Fragments ,Viral Envelope Proteins ,Antigen ,Marburg virus disease ,medicine ,Animals ,Humans ,Marburg Virus Disease ,B-Lymphocytes ,Ebola virus ,Biochemistry, Genetics and Molecular Biology(all) ,Antibodies, Monoclonal ,Marburgvirus ,biology.organism_classification ,Antibodies, Neutralizing ,Virology ,Bundibugyo virus ,Protein Structure, Tertiary ,Mutation ,Female - Abstract
SummaryThe mechanisms by which neutralizing antibodies inhibit Marburg virus (MARV) are not known. We isolated a panel of neutralizing antibodies from a human MARV survivor that bind to MARV glycoprotein (GP) and compete for binding to a single major antigenic site. Remarkably, several of the antibodies also bind to Ebola virus (EBOV) GP. Single-particle EM structures of antibody-GP complexes reveal that all of the neutralizing antibodies bind to MARV GP at or near the predicted region of the receptor-binding site. The presence of the glycan cap or mucin-like domain blocks binding of neutralizing antibodies to EBOV GP, but not to MARV GP. The data suggest that MARV-neutralizing antibodies inhibit virus by binding to infectious virions at the exposed MARV receptor-binding site, revealing a mechanism of filovirus inhibition.
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30. Protective mAbs and Cross-Reactive mAbs Raised by Immunization with Engineered Marburg Virus GPs.
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Marnie L Fusco, Takao Hashiguchi, Robyn Cassan, Julia E Biggins, Charles D Murin, Kelly L Warfield, Sheng Li, Frederick W Holtsberg, Sergey Shulenin, Hong Vu, Gene G Olinger, Do H Kim, Kevin J Whaley, Larry Zeitlin, Andrew B Ward, Cory Nykiforuk, M Javad Aman, Jody D Berry, and Erica Ollmann Saphire
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Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Abstract
The filoviruses, which include the marburg- and ebolaviruses, have caused multiple outbreaks among humans this decade. Antibodies against the filovirus surface glycoprotein (GP) have been shown to provide life-saving therapy in nonhuman primates, but such antibodies are generally virus-specific. Many monoclonal antibodies (mAbs) have been described against Ebola virus. In contrast, relatively few have been described against Marburg virus. Here we present ten mAbs elicited by immunization of mice using recombinant mucin-deleted GPs from different Marburg virus (MARV) strains. Surprisingly, two of the mAbs raised against MARV GP also cross-react with the mucin-deleted GP cores of all tested ebolaviruses (Ebola, Sudan, Bundibugyo, Reston), but these epitopes are masked differently by the mucin-like domains themselves. The most efficacious mAbs in this panel were found to recognize a novel "wing" feature on the GP2 subunit that is unique to Marburg and does not exist in Ebola. Two of these anti-wing antibodies confer 90 and 100% protection, respectively, one hour post-exposure in mice challenged with MARV.
- Published
- 2015
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