Search

Your search keyword '"Chalopin, Domitille"' showing total 142 results
Start Over Author "Chalopin, Domitille"
142 results on '"Chalopin, Domitille"'

3. The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

Author

Braasch, Ingo, Gehrke, Andrew R, Smith, Jeramiah J, Kawasaki, Kazuhiko, Manousaki, Tereza, Pasquier, Jeremy, Amores, Angel, Desvignes, Thomas, Batzel, Peter, Catchen, Julian, Berlin, Aaron M, Campbell, Michael S, Barrell, Daniel, Martin, Kyle J, Mulley, John F, Ravi, Vydianathan, Lee, Alison P, Nakamura, Tetsuya, Chalopin, Domitille, Fan, Shaohua, Wcisel, Dustin, Cañestro, Cristian, Sydes, Jason, Beaudry, Felix EG, Sun, Yi, Hertel, Jana, Beam, Michael J, Fasold, Mario, Ishiyama, Mikio, Johnson, Jeremy, Kehr, Steffi, Lara, Marcia, Letaw, John H, Litman, Gary W, Litman, Ronda T, Mikami, Masato, Ota, Tatsuya, Saha, Nil Ratan, Williams, Louise, Stadler, Peter F, Wang, Han, Taylor, John S, Fontenot, Quenton, Ferrara, Allyse, Searle, Stephen MJ, Aken, Bronwen, Yandell, Mark, Schneider, Igor, Yoder, Jeffrey A, Volff, Jean-Nicolas, Meyer, Axel, Amemiya, Chris T, Venkatesh, Byrappa, Holland, Peter WH, Guiguen, Yann, Bobe, Julien, Shubin, Neil H, Di Palma, Federica, Alföldi, Jessica, Lindblad-Toh, Kerstin, and Postlethwait, John H

Subjects
Biological Sciences, Bioinformatics and Computational Biology, Genetics, Human Genome, Animals, Evolution, Molecular, Female, Fishes, Genome, Humans, Karyotype, Models, Genetic, Organ Specificity, Sequence Analysis, DNA, Transcriptome, Medical and Health Sciences, Developmental Biology, Agricultural biotechnology, Bioinformatics and computational biology
Abstract

To connect human biology to fish biomedical models, we sequenced the genome of spotted gar (Lepisosteus oculatus), whose lineage diverged from teleosts before teleost genome duplication (TGD). The slowly evolving gar genome has conserved in content and size many entire chromosomes from bony vertebrate ancestors. Gar bridges teleosts to tetrapods by illuminating the evolution of immunity, mineralization and development (mediated, for example, by Hox, ParaHox and microRNA genes). Numerous conserved noncoding elements (CNEs; often cis regulatory) undetectable in direct human-teleost comparisons become apparent using gar: functional studies uncovered conserved roles for such cryptic CNEs, facilitating annotation of sequences identified in human genome-wide association studies. Transcriptomic analyses showed that the sums of expression domains and expression levels for duplicated teleost genes often approximate the patterns and levels of expression for gar genes, consistent with subfunctionalization. The gar genome provides a resource for understanding evolution after genome duplication, the origin of vertebrate genomes and the function of human regulatory sequences.

Published
2016

5. Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly

Author

Warren, Wesley C., García-Pérez, Raquel, Xu, Sen, Lampert, Kathrin P., Chalopin, Domitille, Stöck, Matthias, Loewe, Laurence, Lu, Yuan, Kuderna, Lukas, Minx, Patrick, Montague, Michael J., Tomlinson, Chad, Hillier, LaDeana W., Murphy, Daniel N., Wang, John, Wang, Zhongwei, Garcia, Constantino Macias, Thomas, Gregg C. W., Volff, Jean-Nicolas, Farias, Fabiana, Aken, Bronwen, Walter, Ronald B., Pruitt, Kim D., Marques-Bonet, Tomas, Hahn, Matthew W., Kneitz, Susanne, Lynch, Michael, and Schartl, Manfred

Published
2018
Full Text
View/download PDF

6. TREM1+regulatory myeloid cells expand in steatohepatitis-HCC and associate with poor prognosis and therapeutic resistance to immune checkpoint blockade

Author

Giraud, Julie, primary, Chalopin, Domitille, additional, Ramel, Eloïse, additional, Boyer, Thomas, additional, Zouine, Atika, additional, Derieppe, Marie-Alix, additional, Larmonier, Nicolas, additional, Adotevi, Olivier, additional, Bail, Brigitte Le, additional, Blanc, Jean-Frédéric, additional, Chiche, Laurence, additional, Nikolski, Macha, additional, and Saleh, Maya, additional

Published
2022
Full Text
View/download PDF

7. Insights into Sex Chromosome Evolution and Aging from the Genome of a Short-Lived Fish

Author

Reichwald, Kathrin, Petzold, Andreas, Koch, Philipp, Downie, Bryan R., Hartmann, Nils, Pietsch, Stefan, Baumgart, Mario, Chalopin, Domitille, Felder, Marius, Bens, Martin, Sahm, Arne, Szafranski, Karol, Taudien, Stefan, Groth, Marco, Arisi, Ivan, Weise, Anja, Bhatt, Samarth S., Sharma, Virag, Kraus, Johann M., Schmid, Florian, Priebe, Steffen, Liehr, Thomas, Görlach, Matthias, Than, Manuel E., Hiller, Michael, Kestler, Hans A., Volff, Jean-Nicolas, Schartl, Manfred, Cellerino, Alessandro, Englert, Christoph, and Platzer, Matthias

Published
2015
Full Text
View/download PDF

13. Hepatocellular Carcinoma Immune Landscape and the Potential of Immunotherapies

Author

Giraud, Julie, Chalopin, Domitille, Blanc, Jean-Frédéric, Saleh, Maya, Immunology from Concept and Experiments to Translation (ImmunoConcept), Centre National de la Recherche Scientifique (CNRS)-Université de Bordeaux (UB), Centre de Bioinformatique de Bordeaux (CBIB), CGFB, Institut de biochimie et génétique cellulaires (IBGC), Université Bordeaux Segalen - Bordeaux 2-Centre National de la Recherche Scientifique (CNRS), Département d'Oncologie [CHU Bordeaux] (Cancérologie/Oncologie/Digestive), GH Sud Haut-Lévêque [CHU Hôpitaux de Bordeaux] (Centre médico chirurgical Magellan)-Hôpital Saint-André [CHU de Bordeaux], and McGill University = Université McGill [Montréal, Canada]

Subjects
[SDV]Life Sciences [q-bio], digestive system diseases
Abstract

International audience; Hepatocellular carcinoma (HCC) is the most common liver tumor and among the deadliest cancers worldwide. Advanced HCC overall survival is meager and has not improved over the last decade despite approval of several tyrosine kinase inhibitors (TKi) for first and second-line treatments. The recent approval of immune checkpoint inhibitors (ICI) has revolutionized HCC palliative care. Unfortunately, the majority of HCC patients fail to respond to these therapies. Here, we elaborate on the immune landscapes of the normal and cirrhotic livers and of the unique HCC tumor microenvironment. We describe the molecular and immunological classifications of HCC, discuss the role of specific immune cell subsets in this cancer, with a focus on myeloid cells and pathways in anti-tumor immunity, tumor promotion and immune evasion. We also describe the challenges and opportunities of immunotherapies in HCC and discuss new avenues based on harnessing the anti-tumor activity of myeloid, NK and γδ T cells, vaccines, chimeric antigen receptors (CAR)-T or -NK cells, oncolytic viruses, and combination therapies.

Published
2021

16. The African coelacanth genome provides insights into tetrapod evolution

Author

Amemiya, Chris T., Alföldi, Jessica J, Lee, Alison P., Fan, Shaohua S, Philippe, Hervé H, MacCallum, Iain I, Braasch, Ingo I, Manousaki, Tereza T, Schneider, Igor I, Rohner, Nicolas N, Organ, Chris C, Chalopin, Domitille D, Smith, Jeramiah J., Robinson, Mark M, Dorrington, Rosemary A., Gerdol, Marco M, Aken, Bronwen B, Biscotti, Maria Assunta, Barucca, Marco M, Baurain, Denis D, Berlin, Aaron M., Blatch, Gregory L., Buonocore, Francesco F, Burmester, Thorsten T, Campbell, Michael S., Canapa, Adriana A, Cannon, John P., Christoffels, Alan A, De Moro, Gianluca G, Edkins, Adrienne L., Fan, Lin L, Fausto, Anna Maria, Feiner, Nathalie N, Forconi, Mariko M, Gamieldien, Junaid J, Gnerre, Sante S, Gnirke, Andreas A, Goldstone, Jared V., Haerty, Wilfried W, Hahn, Mark E., Hesse, Uljana U, Hoffmann, Steve S, Johnson, Jeremy J, Karchner, Sibel I., Kuraku, Shigehiro S, Lara, Marcia M, Levin, Joshua Z., Litman, Gary W., Mauceli, Evan E, Miyake, Tsutomu T, Mueller, Gail M., Nelson, David R., Nitsche, Anne A, Olmo, Ettore E, Ota, Tatsuya T, Pallavicini, Alberto A, Panji, Sumir S, Picone, Barbara B, Ponting, Chris P., Prohaska, Sonja J., Przybylski, Dariusz D, Saha, Nil Ratan, Ravi, Vydianathan V, Ribeiro, Filipe J., Sauka-Spengler, Tatjana T, Scapigliati, Giuseppe G, Searle, Stephen M. J., Sharpe, Ted T, Simakov, Oleg O, Stadler, Peter F., Stegeman, John J., Sumiyama, Kenta K, Tabbaa, Diana D, Tafer, Hakim H, Turner-Maier, Jason J, van Heusden, Peter P, White, Simon S, Williams, Louise L, Yandell, Mark M, Brinkmann, Henner H, Volff, Jean-Nicolas J, Tabin, Clifford J., Shubin, Neil N, Schartl, Manfred M, Jaffe, David B., Postlethwait, John H., Venkatesh, Byrappa B, Di Palma, Federica F, Lander, Eric S., Meyer, Axel A, and Lindblad-Toh, Kerstin K

Published
2013
Full Text
View/download PDF

19. THBS1+myeloid cells expand in SLD hepatocellular carcinoma and contribute to immunosuppression and unfavorable prognosis through TREM1

Author

Giraud, Julie, Chalopin, Domitille, Ramel, Eloïse, Boyer, Thomas, Zouine, Atika, Derieppe, Marie-Alix, Larmonier, Nicolas, Adotevi, Olivier, Le Bail, Brigitte, Blanc, Jean-Frédéric, Laurent, Christophe, Chiche, Laurence, Derive, Marc, Nikolski, Macha, and Saleh, Maya

Abstract

Hepatocellular carcinoma (HCC) is an inflammation-associated cancer arising from viral or non-viral etiologies including steatotic liver diseases (SLD). Expansion of immunosuppressive myeloid cells is a hallmark of inflammation and cancer, but their heterogeneity in HCC is not fully resolved and might underlie immunotherapy resistance. Here, we present a high resolution atlas of innate immune cells from patients with HCC that unravels a SLD-associated contexture characterized by influx of inflammatory and immunosuppressive myeloid cells, including a discrete population of THBS1+regulatory myeloid (Mreg) cells expressing monocyte- and neutrophil-affiliated genes. THBS1+Mregexpand in SLD-associated HCC, populate fibrotic lesions and are associated with poor prognosis. THBS1+Mregare CD163+but distinguished from macrophages by high expression of Triggering receptor expressed on myeloid cells (TREM)1, which contributes to their immunosuppressive activity and promotes HCC tumor growth in vivo. Our data support myeloid subset-targeted immunotherapies to treat HCC.

Published
2024
Full Text
View/download PDF

24. Additional file 4: Figure S1. of X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species

Author

Yingjia Shen, Chalopin, Domitille, Tzintzuni Garcia, Mikki Boswell, Boswell, William, Shiryev, Sergey, Agarwala, Richa, Jean-Nicolas Volff, Postlethwait, John, Schartl, Manfred, Minx, Patrick, Warren, Wesley, and Walter, Ronald

Abstract

Relationship of GO categories that are enriched in genes with high impact variants. (PPTX 93 kb)

Published
2016
Full Text
View/download PDF

25. Germ cell and tumor associated piRNAs in the medaka and \(Xiphophorus\) melanoma models

Author

Kneitz, Susanne, Mishra, Rasmi R., Chalopin, Domitille, Postlethwait, John, Warren, Wesley C., Walter, Ronald B., and Schartl, Manfred

Subjects
Base Composition, endocrine system, urogenital system, Oryzias, piRNA, Fish model, Cyprinodontiformes, Disease Models, Animal, Cell Transformation, Neoplastic, Germ Cells, Multigene Family, Small RNA-sequencing, DNA Transposable Elements, Genetics, Animals, RNA, Small Interfering, Melanoma, ddc:611, Genetic Association Studies, Research Article, Biotechnology
Abstract

Background A growing number of studies report an abnormal expression of Piwi-interacting RNAs (piRNAs) and the piRNA processing enzyme Piwi in many cancers. Whether this finding is an epiphenomenon of the chaotic molecular biology of the fast dividing, neoplastically transformed cells or is functionally relevant to tumorigenesisis is difficult to discern at present. To better understand the role of piRNAs in cancer development small laboratory fish models can make a valuable contribution. However, little is known about piRNAs in somatic and neoplastic tissues of fish. Results To identify piRNA clusters that might be involved in melanoma pathogenesis, we use several transgenic lines of medaka, and platyfish/swordtail hybrids, which develop various types of melanoma. In these tumors Piwi, is expressed at different levels, depending on tumor type. To quantify piRNA levels, whole piRNA populations of testes and melanomas of different histotypes were sequenced. Because no reference piRNA cluster set for medaka or Xiphophorus was yet available we developed a software pipeline to detect piRNA clusters in our samples and clusters were selected that were enriched in one or more samples. We found several loci to be overexpressed or down-regulated in different melanoma subtypes as compared to hyperpigmented skin. Furthermore, cluster analysis revealed a clear distinction between testes, low-grade and high-grade malignant melanoma in medaka. Conclusions Our data imply that dysregulation of piRNA expression may be associated with development of melanoma. Our results also reinforce the importance of fish as a suitable model system to study the role of piRNAs in tumorigenesis. Electronic supplementary material The online version of this article (doi:10.1186/s12864-016-2697-z) contains supplementary material, which is available to authorized users.

Published
2016

26. Additional file 4: Figure S3. of Germ cell and tumor associated piRNAs in the medaka and Xiphophorus melanoma models

Author

Kneitz, Susanne, Rasmi R. Mishra, Chalopin, Domitille, Postlethwait, John, Warren, Wesley C., Walter, Ronald B., and Schartl, Manfred

Abstract

Pie charts of the base distribution of piRNA sequences: medaka at the first position (A) and at the 10th position (B) and of Xiphophorus at sequence position 1 (C) and 10 (D). (PDF 310Â kb)

Published
2016
Full Text
View/download PDF

27. Additional file 7: Figure S3. of X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species

Author

Yingjia Shen, Chalopin, Domitille, Tzintzuni Garcia, Mikki Boswell, Boswell, William, Shiryev, Sergey, Agarwala, Richa, Jean-Nicolas Volff, Postlethwait, John, Schartl, Manfred, Minx, Patrick, Warren, Wesley, and Walter, Ronald

Abstract

Dot plots of location of one-to-one orthologues in the chromosomes of X. hellerii and X. maculatus. (PDF 111 kb)

Published
2016
Full Text
View/download PDF

28. Additional file 6: Figure S2. of X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species

Author

Yingjia Shen, Chalopin, Domitille, Tzintzuni Garcia, Mikki Boswell, Boswell, William, Shiryev, Sergey, Agarwala, Richa, Jean-Nicolas Volff, Postlethwait, John, Schartl, Manfred, Minx, Patrick, Warren, Wesley, and Walter, Ronald

Abstract

Dot plots of location of one-to-one orthologues in the 24 chromosomes of X. couchianus and X. maculatus. (PDF 110 kb)

Published
2016
Full Text
View/download PDF

30. Corrigendum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

Author

Braasch, Ingo, Gehrke, Andrew R., Smith, Jeramiah J., Kawasaki, Kazuhiko, Manousaki, Tereza, Pasquier, Jérémy, Amores, Angel, Desvignes, Thomas, Batzel, Peter, Catchen, Julian, Berlin, Aaron M., Campbell, Michael S., Barrell, Daniel, Martin, Kyle J., Mulley, John F., Ravi, Vydianathan, Lee, Alison P., Nakamura, Tetsuya, Chalopin, Domitille, Fan, Shaohua, Wcisel, Dustin, Cañestro, Cristian, Sydes, Jason, Beaudry, Felix E.G., Sun, Yi, Hertel, Jana, Beam, Michael J., Fasold, Mario, Ishiyama, Mikio, Johnson, Jeremy, Kehr, Steffi, Lara, Marcia, Letaw, John H., Litman, Gary W., Litman, Ronda T., Mikami, Masato, Ota, Tatsuya, Saha, Nil Ratan, Williams, Louise, Stadler, Peter F., Wang, Han, Taylor, John S., Fontenot, Quenton, Ferrara, Allyse, Searle, Stephen M.J., Aken, Bronwen, Yandell, Mark, Schneider, Igor, Yoder, Jeffrey A, Volff, Jean-Nicolas, Meyer, Axel, Amemiya, Chris T, Venkatesh, Byrappa, Holland, Peter W.H., Guiguen, Yann, Bobe, Julien, Shubin, Neil H., Di Palma, Federica, Alföldi, Jessica, Lindblad-Toh, Kerstin, Postlethwait, John H., Institute of Neuroscience, National Research Council [Italy] (CNR), Department of Integrative Biology [Berkeley] (IB), University of California [Berkeley], University of California-University of California, Department of Organismal Biology and Anatomy, University of Chicago, Department of Biology, Northern Arizona University [Flagstaff], Department of Anthropology, University of California, Pennsylvania State University (Penn State), Penn State System, Hellenic Centre for Marine Research, Hellenic Center for Marine Research (HCMR), Laboratoire de Physiologie et Génomique des Poissons (LPGP), Institut National de la Recherche Agronomique (INRA)-Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique ), Department of Animal Biology, University of Pennsylvania [Philadelphia], Broad Institute of MIT and Harvard (BROAD INSTITUTE), Harvard Medical School [Boston] (HMS)-Massachusetts Institute of Technology (MIT)-Massachusetts General Hospital [Boston], Eccles Institute of Human Genetics, University of Utah, Cold Spring Harbor, Cold Spring Harbor Laboratory, Wellcome Trust Genome Campus, The Wellcome Trust Sanger Institute [Cambridge], European Bioinformatics Institute [Hinxton] (EMBL-EBI), EMBL Heidelberg, Department of Zoology, Auburn University (AU), Department of Animal and Plant Sciences [Sheffield], University of Sheffield [Sheffield], School of Biological Sciences [Bangor], Bangor University, Comparative Genomics Laboratory, Agency for Science, Technology and Research (A*STAR), International Institute of Molecular and Cell Biology, Institut de Génomique Fonctionnelle de Lyon (IGFL), École normale supérieure - Lyon (ENS Lyon)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Department of Genetics, The University of Texas M.D. Anderson Cancer Center [Houston], Department of Molecular Biomedical Sciences Raleigh, North Carolina State University [Raleigh] (NC State), University of North Carolina System (UNC)-University of North Carolina System (UNC), Center for Comparative Medicine and Translational Research Raleigh, Departament de Genètica, Universitat Autònoma de Barcelona [Barcelona] (UAB), Institut de Recerca de la Biodiversitat, University of Barcelona, University of Victoria, Center for Circadian Clocks, Soochow University, School of Biology and Basic Medical Sciences, Medical College, Bioinformatics Group, Department of Computer Science, Universität Leipzig [Leipzig], Young Investigators Group Bioinformatics and Transcriptomics, Department of Proteomics, Helmholtz Centre for Environmental Research (UFZ), Department of Dental Hygiene, Nippon Dental University, Morsani College of Medicine, Department of Pediatrics, University of South Florida (USF), Department of Microbiology, Department of Evolutionary Studies of Biosystems, SOKENDAI, Graduate University for Advanced Studies, Molecular Genetics Program, Benaroya Research Institute, Department of Biological Sciences, The Open University [Milton Keynes] (OU), European Molecular Biology Laboratory, Wellcome Trust Genome Campus, European Bioinformatics Institute, Instituto de Ciências Biológicas, Federal University of Para - Universidade Federal do Para [Belem - Brésil], Department of Molecular Biomedical Sciences, University of North Carolina System (UNC)-University of North Carolina System (UNC)-College of Veterinary Medicine Raleigh, Center for Comparative Medicine and Translational Research, International Max Planck Research School for Organismal Biology (IMPRS), University of Konstanz, Genome Analysis Center, Vertebrate and Health Genomics, Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique )-Institut National de la Recherche Agronomique (INRA), Hellenic Centre for Marine Research (HCMR), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Recherche Agronomique (INRA)-École normale supérieure - Lyon (ENS Lyon), Universitat Autònoma de Barcelona (UAB), University of Victoria [Canada] (UVIC), Helmholtz Zentrum für Umweltforschung = Helmholtz Centre for Environmental Research (UFZ), University of South Florida [Tampa] (USF), University of California [Berkeley] (UC Berkeley), University of California (UC)-University of California (UC), University of California (UC), University of Pennsylvania, École normale supérieure de Lyon (ENS de Lyon)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), Universität Leipzig, and Federal University of Para - Universidade Federal do Pará - UFPA [Belém, Brazil] (UFPA)

Subjects
[SDV]Life Sciences [q-bio], analyse phylogénétique, reproduction, poisson, analyse génomique, human, chromosome, analyse du transcriptome, genome, duplication des génomes, miRNA, fish, teleost, physiologie animale, séquence régulatrice, vertébré, homme, lepisosteus oculatus, interaction animal homme, lépisosté tacheté, évolution du génome, fonction des gènes, teleosteen, regulatory sequence, vertebrates, immunité, expression des gènes
Abstract

The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons (vol 48, pg 427, 2016); As we intended, other researchers have been able to use the draft spotted gar genome sequence available from the Broad Institute website since December 2011, the assembly LepOcu1 publicly available from NCBI since 13 January 2012 under accession code GCA000242695.1, and the Ensembl gene annotation (version 74, December 2013; http://www.ensembl.org/Lepisosteus_oculatus/Info/Annotation) and recent annotation by NCBI on 15 May 2014 guided by RNA sequence data from ten tissues. While this article was in review, a paper (Nature 526, 108–111, 2015) was published that arrives at conclusions similar to some of our own analyses, and we wish to acknowledge that publication, which used our unpublished data and genome annotations, emphasizing the importance of the strategy of early release of sequence data. The correction has been made to the HTML and PDF versions of the article.

Published
2016

31. Guidelines for the Nomenclature of Genetic Elements in Tunicate Genomes

Author

Stolfi, Alberto, Sasakura, Yasunori, Chalopin, Domitille, Satou, Yutaka, Christiaen, Lionel, Dantec, Christelle, Endo, Toshinori, Naville, Magali, Nishida, Hiroki, Swalla, Billie J., Volff, Jean-Nicolas, Voskoboynik, Ayelet, Dauga, Delphine, Lemaire, Patrick, Shimoda Marine Research Center, University of Tsukuba, École normale supérieure - Lyon (ENS Lyon), Institut de Génomique Fonctionnelle de Lyon (IGFL), École normale supérieure - Lyon (ENS Lyon)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Kyoto University [Kyoto], Department of Molecular & Cell Biology [Berkeley], University of California [Berkeley], University of California-University of California, Centre de recherche en Biologie Cellulaire (CRBM), Université Montpellier 1 (UM1)-Université Montpellier 2 - Sciences et Techniques (UM2)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Institut de biologie de l'ENS Paris (UMR 8197/1024) (IBENS), Département de Biologie - ENS Paris, École normale supérieure - Paris (ENS Paris)-École normale supérieure - Paris (ENS Paris)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Osaka University [Osaka], Friday Harbor Laboratories, University of Washington [Seattle], HOPKINS MARINE STATION, Stanford University [Stanford], Bioself Communication [Marseille], Université de Tsukuba = University of Tsukuba, École normale supérieure de Lyon (ENS de Lyon), École normale supérieure de Lyon (ENS de Lyon)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), Kyoto University, University of California [Berkeley] (UC Berkeley), University of California (UC)-University of California (UC), Centre de recherche en Biologie cellulaire de Montpellier (CRBM), Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Institut de biologie de l'ENS Paris (IBENS), École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Hopkins Marine Station [Stanford], Stanford University, National Science Foundation Postdoctoral Research Fellowship in Biology NSF-1161835 National Bioresource Project (Japan) NIGMS/NIH R01GM096032 NHLBI/NIH R01HL108643 R01GM100315 1R01AG037968 PIME from CNRS National Science Foundation DBI-0939454, Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Recherche Agronomique (INRA)-École normale supérieure - Lyon (ENS Lyon), Université Montpellier 2 - Sciences et Techniques (UM2)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Université Montpellier 1 (UM1), École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS Paris), Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Département de Biologie - ENS Paris, and Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)

Subjects
EXPRESSION, Transcription, Genetic, genome annotation, DATABASE, tunicates, Guidelines as Topic, SEQUENCE, Article, cis-regulatory sequences, Terminology as Topic, LHX3, Genes, Overlapping, Animals, Urochordata, PLASTICITY, gene, Phylogeny, Genome, Chromosome Mapping, Genomics, transposable element, CHORDATE, ASCIDIAN CIONA-INTESTINALIS, Antisense Elements (Genetics), Genetic Loci, [SCCO.PSYC]Cognitive science/Psychology, SYSTEM
Abstract

International audience; Tunicates are invertebrate members of the chordate phylum, and are considered to be the sister group of vertebrates. Tunicates are composed of ascidians, thaliaceans, and appendicularians. With the advent of inexpensive high-throughput sequencing, the number of sequenced tunicate genomes is expected to rise sharply within the coming years. To facilitate comparative genomics within the tunicates, and between tunicates and vertebrates, standardized rules for the nomenclature of tunicate genetic elements need to be established. Here we propose a set of nomenclature rules, consensual within the community, for predicted genes, pseudogenes, transcripts, operons, transcriptional cis-regulatory regions, transposable elements, and transgenic constructs. In addition, the document proposes guidelines for naming transgenic and mutant lines. genesis 53:65-78, 2015. (c) 2014 Wiley Periodicals, Inc.

Published
2015

32. Insights into vertebrate whole-genome duplications from the rainbow trout genome

Author

Berthelot, Camille, Brunet , Frédéric, Chalopin, Domitille, Juanchich, Amélie, Bernard, Maria, Jaillon, Olivier, Roest Crollius, Hugues, Guiguen, Yann, École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL), Institut de biologie de l'ENS Paris (IBENS), Département de Biologie - ENS Paris, Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Genoscope - Centre national de séquençage [Evry] (GENOSCOPE), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), École normale supérieure de Lyon (ENS de Lyon), Institut de Génomique Fonctionnelle de Lyon (IGFL), École normale supérieure de Lyon (ENS de Lyon)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Laboratoire de Physiologie et Génomique des Poissons (LPGP), Institut National de la Recherche Agronomique (INRA)-Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique ), Génétique Animale et Biologie Intégrative (GABI), Institut National de la Recherche Agronomique (INRA)-AgroParisTech, Génomique métabolique (UMR 8030), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS), Universidad de Puerto Rico. PRI., École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS Paris), Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay, École normale supérieure - Lyon (ENS Lyon), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Recherche Agronomique (INRA)-École normale supérieure - Lyon (ENS Lyon), Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique )-Institut National de la Recherche Agronomique (INRA), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Université d'Évry-Val-d'Essonne (UEVE), École normale supérieure - Lyon (ENS Lyon)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), ProdInra, Archive Ouverte, Institut de biologie de l'ENS Paris (UMR 8197/1024) (IBENS), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-École normale supérieure - Paris (ENS Paris), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS)-Université d'Évry-Val-d'Essonne (UEVE), École normale supérieure - Paris (ENS Paris)-École normale supérieure - Paris (ENS Paris)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), AgroParisTech-Institut National de la Recherche Agronomique (INRA), and Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS)

Subjects
salmonidae, Reproductive Biology, poisson, génome, [SDV.BDD] Life Sciences [q-bio]/Development Biology, Biologie de la reproduction, Biologie du développement, [SDV.BDLR]Life Sciences [q-bio]/Reproductive Biology, Development Biology, duplication des génomes, [SDV.BDD]Life Sciences [q-bio]/Development Biology, [SDV.BDLR] Life Sciences [q-bio]/Reproductive Biology, truite arc en ciel
Abstract

absent

Published
2014

33. Génomique comparative de l'évolution et de l'impact évolutif des éléments transposables chez les poissons et autres vertébrés

Author

Chalopin, Domitille, Institut de Génomique Fonctionnelle de Lyon (IGFL), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Recherche Agronomique (INRA)-École normale supérieure - Lyon (ENS Lyon), Ecole normale supérieure de lyon - ENS LYON, Jean-Nicolas Volff, École normale supérieure - Lyon (ENS Lyon)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), École normale supérieure de Lyon (ENS de Lyon)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), and STAR, ABES

Subjects
Diversity, Nouveautés génétiques, Génomes de vertébrés, Molecular domestication, Genetic novelties, [SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology, Vertebrate genomes, [SDV.BBM.BM] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology, Domestication moléculaire, Contenu, Content, Diversité, Transposable elements, Eléments transposables
Abstract

Transposable elements (TEs) are mobile genetic elements - able to move and to multiply within genomes - identified in almost all living organisms including bacteria. Considered as junk DNA for long, nowadays they are undeniably major players of gene, genome and host evolution. TEs can be deleterious causing diseases but these “parasites” can also be source of new genetic materials as promoters or even new genes bringing new functions for hosts. The objectives of my thesis was to determine the presence or not of the different TE families in vertebrate genomes, as well as their respective content to understand their evolutionary history. I performed a large-Scale comparative analysis to highlight the various evolutionary strategies of TEs. I showed that TE content is highly variable in vertebrate genomes, the smallest and the largest being found in fish, and may contribute to their genome sizes especially in fish. These superfamilies underwent differential waves of activity in vertebrate species highlighting TE dynamics. On another hand, I focused on the study of a vertebrate-Specific TE-Derived gene, named Gin-2, to understand its origin, evolution, and its potential function in vertebrates. In silico analyses showed that Gin-2 is a very ancient gene (500 My, only absent from placentals) derived from GIN transposons. Further analyses present a particular expression in brain and gonads during adulthood, while a strong expression during gastrulation suggests a potential role of Gin-2 in zebrafish development. All together, the different analyses contribute to a better view of TE evolution and their evolutionary impacts in vertebrate genomes., Les éléments transposables (ETs) sont des éléments génétiques mobiles capables de se déplacer et de se multiplier au sein d’un génome. Identifiés dans la plupart des espèces vivantes incluant les bactéries, mais longtemps considérés comme de l’ADN poubelle, aujourd’hui les ETs sont indéniablement des acteurs majeurs impliqués dans l’évolution des gènes, des génomes et des organismes. Si à l’échelle des individus les ETs peuvent avoir des effets délétères pouvant entrainer des maladies, à plus grande échelle ils sont de puissants agents évolutifs impliqués dans la plasticité génomique. Ces « parasites » peuvent également être sources de nouveaux matériels génétiques comme des promoteurs ou même de nouveaux gènes avec de nouvelles fonctions pour l’hôte. Les objectifs majeurs de mon travail de thèse ont été de déterminer les différentes familles d’ETs présentes dans les génomes de poissons, la part que chacune d’entre elles occupe dans ces génomes et enfin de comprendre l’histoire évolutive des familles d’ETs dans les génomes de poissons en comparaison avec les autres génomes de vertébrés. Cette comparaison à grande échelle permettra de comprendre les différentes stratégies évolutives des ETs. D’autre part, j’ai étudié deux gènes de vertébrés, Gin-1 et Gin-2 dérivés d’ETs, dans le but de comprendre leurs origines et évolution au sein des vertébrés ainsi que d’émettre des hypothèses quant à leur fonction moléculaire potentielle encore inconnue. Pour cela, des analyses in silico ont permis de mieux comprendre les origines de ces gènes. Gin-1, présent chez les amniotes, et Gin-2, absent uniquement des mammifères placentaires, dérivent tous deux de transposons GIN.

Published
2014

34. Erratum: Corrigendum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

Author

Braasch, Ingo, primary, Gehrke, Andrew R, additional, Smith, Jeramiah J, additional, Kawasaki, Kazuhiko, additional, Manousaki, Tereza, additional, Pasquier, Jeremy, additional, Amores, Angel, additional, Desvignes, Thomas, additional, Batzel, Peter, additional, Catchen, Julian, additional, Berlin, Aaron M, additional, Campbell, Michael S, additional, Barrell, Daniel, additional, Martin, Kyle J, additional, Mulley, John F, additional, Ravi, Vydianathan, additional, Lee, Alison P, additional, Nakamura, Tetsuya, additional, Chalopin, Domitille, additional, Fan, Shaohua, additional, Wcisel, Dustin, additional, Cañestro, Cristian, additional, Sydes, Jason, additional, Beaudry, Felix E G, additional, Sun, Yi, additional, Hertel, Jana, additional, Beam, Michael J, additional, Fasold, Mario, additional, Ishiyama, Mikio, additional, Johnson, Jeremy, additional, Kehr, Steffi, additional, Lara, Marcia, additional, Letaw, John H, additional, Litman, Gary W, additional, Litman, Ronda T, additional, Mikami, Masato, additional, Ota, Tatsuya, additional, Saha, Nil Ratan, additional, Williams, Louise, additional, Stadler, Peter F, additional, Wang, Han, additional, Taylor, John S, additional, Fontenot, Quenton, additional, Ferrara, Allyse, additional, Searle, Stephen M J, additional, Aken, Bronwen, additional, Yandell, Mark, additional, Schneider, Igor, additional, Yoder, Jeffrey A, additional, Volff, Jean-Nicolas, additional, Meyer, Axel, additional, Amemiya, Chris T, additional, Venkatesh, Byrappa, additional, Holland, Peter W H, additional, Guiguen, Yann, additional, Bobe, Julien, additional, Shubin, Neil H, additional, Di Palma, Federica, additional, Alfo¨ldi, Jessica, additional, Lindblad-Toh, Kerstin, additional, and Postlethwait, John H, additional

Published
2016
Full Text
View/download PDF

36. X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species

Author

Shen, Yingjia, primary, Chalopin, Domitille, additional, Garcia, Tzintzuni, additional, Boswell, Mikki, additional, Boswell, William, additional, Shiryev, Sergey A., additional, Agarwala, Richa, additional, Volff, Jean-Nicolas, additional, Postlethwait, John H., additional, Schartl, Manfred, additional, Minx, Patrick, additional, Warren, Wesley C., additional, and Walter, Ronald B., additional

Published
2016
Full Text
View/download PDF

37. Identification and FISH mapping of different families of transposons in the Atlantic eel (Anguilla anguilla) genome

Author

Coluccia, E., Chalopin, Domitille, Deiana, A. M., Salvadori, S., Deidda, F., Galiana, Delphine, Volff, Jean-Nicolas, University of Cagliari, Institut de Génomique Fonctionnelle de Lyon (IGFL), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Recherche Agronomique (INRA)-École normale supérieure - Lyon (ENS Lyon), Université de Lyon, École normale supérieure - Lyon (ENS Lyon), École normale supérieure - Lyon (ENS Lyon)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Università degli Studi di Cagliari = University of Cagliari (UniCa), École normale supérieure de Lyon (ENS de Lyon)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), and École normale supérieure de Lyon (ENS de Lyon)

Subjects
[SDV]Life Sciences [q-bio], [INFO]Computer Science [cs], ComputingMilieux_MISCELLANEOUS
Abstract

International audience

Published
2012

38. GENOTROUT - Apport des nouvelles technologies de séquençage (NGS) à l'analyse du génome pseudotétraploide de la truite arc-en-ciel (2010-2012)

Author

Guiguen, Yann, Genet, Carine, Quillet, Edwige, Volff, Jean-Nicolas, Chalopin, Domitille, Galiana-Arnoux, Delphine, Jaillon, Olivier, Wincker, Patrick, Laboratoire de Physiologie et Génomique des Poissons (LPGP), Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique )-Institut National de la Recherche Agronomique (INRA), Institut Fédératif de Recherche - Génétique Fonctionnelle Agronomie et Santé (IFR 140 GFAS), Plateforme Génomique Santé Biogenouest®, Génétique Animale et Biologie Intégrative (GABI), AgroParisTech-Institut National de la Recherche Agronomique (INRA), Institut de Génomique Fonctionnelle de Lyon (IGFL), École normale supérieure - Lyon (ENS Lyon)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Genoscope - Centre national de séquençage [Evry] (GENOSCOPE), Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay, Station commune de Recherches en Ichtyophysiologie, Biodiversité et Environnement (SCRIBE), Institut National de la Recherche Agronomique (INRA), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Recherche Agronomique (INRA)-École normale supérieure - Lyon (ENS Lyon), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Institut National de la Recherche Agronomique (INRA)-AgroParisTech, École normale supérieure de Lyon (ENS de Lyon)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), and Institut National de la Recherche Agronomique (INRA)-Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique )

Subjects
salmonidae, Séquençage, oncorhynchus mykiss, salmonidé, génome, [SDV]Life Sciences [q-bio], génomique fonctionnelle, Analyse du génome, Poisson, truite arc en ciel
Abstract

absent

Published
2010

39. Initial characterization of transposable elements in the pseudo-tetraploid genome of the rainbow trout

Author

Chalopin, Domitille, Genet, Carine, Brunet, Frédéric, Galiana-Arnoux, Delphine, Boehne, Astrid, Guiguen, Yann, Volff, Jean-Nicolas, Institut de Génomique Fonctionnelle de Lyon (IGFL), École normale supérieure - Lyon (ENS Lyon)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS), Génétique Animale et Biologie Intégrative (GABI), AgroParisTech-Institut National de la Recherche Agronomique (INRA), Laboratoire de Physiologie et Génomique des Poissons (LPGP), Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique )-Institut National de la Recherche Agronomique (INRA), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Recherche Agronomique (INRA)-École normale supérieure - Lyon (ENS Lyon), Institut National de la Recherche Agronomique (INRA)-AgroParisTech, Station commune de Recherches en Ichtyophysiologie, Biodiversité et Environnement (SCRIBE), Institut National de la Recherche Agronomique (INRA), Institut National de la Recherche Agronomique (INRA)-Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique ), and École normale supérieure de Lyon (ENS de Lyon)-Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL)

Subjects
[SDV]Life Sciences [q-bio]
Abstract

absent

Published
2010

43. The cavefish genome reveals candidate genes for eye loss

Author

McGaugh, Suzanne E., primary, Gross, Joshua B., additional, Aken, Bronwen, additional, Blin, Maryline, additional, Borowsky, Richard, additional, Chalopin, Domitille, additional, Hinaux, Hélène, additional, Jeffery, William R., additional, Keene, Alex, additional, Ma, Li, additional, Minx, Patrick, additional, Murphy, Daniel, additional, O’Quin, Kelly E., additional, Rétaux, Sylvie, additional, Rohner, Nicolas, additional, Searle, Steve M. J., additional, Stahl, Bethany A., additional, Tabin, Cliff, additional, Volff, Jean-Nicolas, additional, Yoshizawa, Masato, additional, and Warren, Wesley C., additional

Published
2014
Full Text
View/download PDF

44. Guidelines for the nomenclature of genetic elements in tunicate genomes

Author

Stolfi, Alberto, primary, Sasakura, Yasunori, additional, Chalopin, Domitille, additional, Satou, Yutaka, additional, Christiaen, Lionel, additional, Dantec, Christelle, additional, Endo, Toshinori, additional, Naville, Magali, additional, Nishida, Hiroki, additional, Swalla, Billie J., additional, Volff, Jean-Nicolas, additional, Voskoboynik, Ayelet, additional, Dauga, Delphine, additional, and Lemaire, Patrick, additional

Published
2014
Full Text
View/download PDF

46. The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates

Author

Berthelot, Camille, primary, Brunet, Frédéric, additional, Chalopin, Domitille, additional, Juanchich, Amélie, additional, Bernard, Maria, additional, Noël, Benjamin, additional, Bento, Pascal, additional, Da Silva, Corinne, additional, Labadie, Karine, additional, Alberti, Adriana, additional, Aury, Jean-Marc, additional, Louis, Alexandra, additional, Dehais, Patrice, additional, Bardou, Philippe, additional, Montfort, Jérôme, additional, Klopp, Christophe, additional, Cabau, Cédric, additional, Gaspin, Christine, additional, Thorgaard, Gary H., additional, Boussaha, Mekki, additional, Quillet, Edwige, additional, Guyomard, René, additional, Galiana, Delphine, additional, Bobe, Julien, additional, Volff, Jean-Nicolas, additional, Genêt, Carine, additional, Wincker, Patrick, additional, Jaillon, Olivier, additional, Crollius, Hugues Roest, additional, and Guiguen, Yann, additional

Published
2014
Full Text
View/download PDF

48. Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle

Author

Chen, Songlin, primary, Zhang, Guojie, additional, Shao, Changwei, additional, Huang, Quanfei, additional, Liu, Geng, additional, Zhang, Pei, additional, Song, Wentao, additional, An, Na, additional, Chalopin, Domitille, additional, Volff, Jean-Nicolas, additional, Hong, Yunhan, additional, Li, Qiye, additional, Sha, Zhenxia, additional, Zhou, Heling, additional, Xie, Mingshu, additional, Yu, Qiulin, additional, Liu, Yang, additional, Xiang, Hui, additional, Wang, Na, additional, Wu, Kui, additional, Yang, Changgeng, additional, Zhou, Qian, additional, Liao, Xiaolin, additional, Yang, Linfeng, additional, Hu, Qiaomu, additional, Zhang, Jilin, additional, Meng, Liang, additional, Jin, Lijun, additional, Tian, Yongsheng, additional, Lian, Jinmin, additional, Yang, Jingfeng, additional, Miao, Guidong, additional, Liu, Shanshan, additional, Liang, Zhuo, additional, Yan, Fang, additional, Li, Yangzhen, additional, Sun, Bin, additional, Zhang, Hong, additional, Zhang, Jing, additional, Zhu, Ying, additional, Du, Min, additional, Zhao, Yongwei, additional, Schartl, Manfred, additional, Tang, Qisheng, additional, and Wang, Jun, additional

Published
2014
Full Text
View/download PDF

49. Transcriptional activity of transposable elements in coelacanth

Author

Forconi, Mariko, primary, Chalopin, Domitille, additional, Barucca, Marco, additional, Biscotti, Maria Assunta, additional, De Moro, Gianluca, additional, Galiana, Delphine, additional, Gerdol, Marco, additional, Pallavicini, Alberto, additional, Canapa, Adriana, additional, Olmo, Ettore, additional, and Volff, Jean-Nicolas, additional

Published
2013
Full Text
View/download PDF

Catalog

Books, media, physical & digital resources
See catalog results