3,654 results on '"Chad S"'
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2. Visions of sustainable development and the future of smallholder farmers in sub-Saharan Africa (and beyond)
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Chad S. Boda, Angela Dziedzom Akorsu, Frederick Ato Armah, Adrine Atwiine, Ronald Byaruhanga, Walter Chambati, Bernard Ekumah, Turaj Faran, Charles Tetteh Hombey, Ellinor Isgren, Anne Jerneck, Freedom Mazwi, Elizabeth Mpofu, Delmah Ndhlovu, Laury Ocen, and Michaelin Sibanda
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rural development ,capital theory ,capabilities approach ,collective action & social movements ,development theory ,Nutrition. Foods and food supply ,TX341-641 ,Food processing and manufacture ,TP368-456 - Abstract
Smallholder farmers are widely touted as essential to sustainable agricultural development in sub-Saharan Africa and beyond. But what exactly is meant by sustainable development, and how are smallholder farmers expected to contribute to it? In this perspective, we describe and assess two competing visions of sustainable development, namely Capital Theory and the Capabilities approach, paying special attention to the major yet divergent repercussions each approach implies for the future of smallholder farmers and the activities of their representative organizations. We present the core concepts, tools and practices stemming from each sustainable development perspective, and from a critique of these motivate the superiority of a capabilities approach as more conducive to smallholder farmers wellbeing now and in the future. In doing so, we bring to the fore the pivotal role smallholder farmer organizations and rural social movements, as collective vehicles for smallholder political agency, play in strategically advocating for the conditions that support sustainable and just smallholder agriculture in sub-Saharan Africa and beyond.
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- 2024
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3. Post-fire management decisions have consequences: Drill-seeding disturbance and effects of co-seeding introduced with native bunchgrasses
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Kirk W. Davies, Chad S. Boyd, Lauren N. Svejcar, Trace E. Martyn, and Jon D. Bates
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Cheatgrass ,Crested wheatgrass ,Exotic annual grasses ,Native bunchgrasses ,Native forbs ,Resistance ,Ecology ,QH540-549.5 - Abstract
Wildfires and the demand for post-fire seeding are increasing in the sagebrush ecosystem threatened by invasive annual grasses. Drill-seeding bunchgrasses after wildfire is a common strategy for limiting annual grasses. However, there are concerns that the soil disturbance associated with drill-seeding may negatively impact the plant community, particularly if seeded species fail to establish. Similarly, there are worries that co-seeding introduced bunchgrasses with natives, to hedge against low native bunchgrass establishment, may limit native bunchgrass success. We investigated the effects of the disturbance of drill-seeding and the impacts of co-seeding introduced bunchgrasses after wildfire in sagebrush communities at four sites up to six years post-seeding. The disturbance of drill-seeding increased invasive annual grasses from ∼10 % to >15 % cover and increased its density by >200 plants∙m−2 by the end of the study. Bunchgrasses appeared to not be influenced by the disturbance of drill-seeding; however, drill-seeding slightly reduced perennial forb density. These results suggest that restoration practitioners need to consider potential negative consequences of drill-seeding, especially when and where selected plant materials may fail to establish in high abundance. Co-seeding introduced bunchgrasses with native bunchgrasses limited native bunchgrasses and also slightly decreased native perennial forbs. However, co-seeding introduced bunchgrasses reduced invasive annual grasses by ∼50 %, while seeding only native bunchgrasses did not reduce annual grasses. These findings suggest that co-seeding introduced and native bunchgrasses may not be advisable. We suggest: 1) If native bunchgrasses are unlikely to establish in high abundance, then introduced bunchgrasses should be used, and 2) If seeded native bunchgrasses are likely to meet management objectives, then introduced bunchgrasses should not be co-seeded. Additional investigations are needed in other areas to determine the applicability of the results of this study to the larger sagebrush ecosystem. Clearly, the potential consequences of post-fire management will need to be considered as restoration plans are developed, but additional research is needed to better inform management decisions.
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- 2024
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4. One-year real-world experience with mavacamten and its physiologic effects on obstructive hypertrophic cardiomyopathy
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Daniel Seung Kim, Emily L. Chu, Emily E. Keamy-Minor, Ishan Dhananjay Paranjpe, Wilson L. Tang, Jack W. O’Sullivan, Yaanik B. Desai, Michael B. Liu, Elise Munsey, Kimberly Hecker, Isabella Cuenco, Beth Kao, Ellen Bacolor, Colleen Bonnett, Andrea Linder, Kathleen Lacar, Nancy Robles, Cindy Lamendola, Allysonne Smith, Joshua W. Knowles, Marco V. Perez, Masataka Kawana, Karim I. Sallam, Chad S. Weldy, Matthew T. Wheeler, Victoria N. Parikh, Heidi Salisbury, Euan A. Ashley, the Stanford Center for Inherited Cardiovascular Disease, Karim I Sallam, Chad S Weldy, Marco Perez, Joshua W Knowles, Jason Tso, Julia Platt, Chloe Reuter, Tia Moscarello, Ryan Murtha, Jennifer Kohler, Hannah Ison, Mitchel Pariani, Anusha Klinder, Priya Nair, Jennifer Marino, Ruchi Patel, Matthew T Wheeler, Euan A Ashley, and Victoria N Parikh
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mavacamten ,MYK-461 ,hypertrophic cardiomyopathy ,cardiac myosin inhibitor ,hypertrophic cardiomyopathy with obstruction (oHCM) ,hypertrophic obstructive cardiomyopathy (HOCM) ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Mavacamten is a first-in-class cardiac myosin ATPase inhibitor, approved by the United States Food and Drug Administration for the treatment of hypertrophic cardiomyopathy with obstructive physiology (oHCM). Here, we present the real-world use of mavacamten in 50 patients with oHCM at a tertiary care referral center. In both our highlighted case and in our aggregate data, we report significant improvement in wall thickness, mitral regurgitation, left ventricular outflow tract obstruction and New York Heart Association symptom class. Moreover, in our center's experience, neither arrhythmia burden, nor contractility have worsened in the vast majority of patients: we note a clinically insignificant mean decrease in left ventricular ejection fraction (LVEF), with only two patients requiring temporary mavacamten discontinuance for LVEF
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- 2024
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5. Incorporating core concepts into an undergraduate neuroscience program in a resource-restricted environment
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Adam M. Stocker and Chad S. Duncan
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pedagogy ,primarily undergraduate institutions (PUIs) ,curriculum development ,interdisciplinary collaboration ,biological principles ,post-secondary education ,Education (General) ,L7-991 - Abstract
Recently, community-derived core concepts for neuroscience higher education were developed and published. These core concepts can serve as a valuable resource to ensure that a neuroscience-based educational program is not only concept-focused but also addresses the call for reform of higher education, as noted in the vision and change report. The number of undergraduate neuroscience programs is expanding throughout the nation, but unfortunately, the existing blueprints to design and launch such programs do not incorporate these core concepts. Furthermore, unpacking these core concepts in a resource-limited setting is logistically challenging. We reflected on the coverage of these core concepts within our existing neuroscience minor at a medium-sized, primarily residential, high undergraduate, public 4-year institution. In addition to assessing the number of community-derived core concepts addressed in our courses, our reflection discusses strategies for addressing challenges associated with (1) a departmental home for the program, (2) a meaningful student experience with limited resources, and (3) growing and developing the program into a minor, or from a minor into a major. These strategies may provide a roadmap for other institutions to launch or grow their own neuroscience program.
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- 2024
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6. Pathogenic differences of cynomolgus macaques after Taï Forest virus infection depend on the viral stock propagation.
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Paige Fletcher, Chad S Clancy, Kyle L O'Donnell, Brianna M Doratt, Delphine C Malherbe, Joseph F Rhoderick, Friederike Feldmann, Patrick W Hanley, Ayato Takada, Ilhem Messaoudi, and Andrea Marzi
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Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Abstract
Taï Forest virus (TAFV) is a negative-sense RNA virus in the Filoviridae family. TAFV has caused only a single human infection, but several disease outbreaks in chimpanzees have been linked to this virus. Limited research has been done on this human-pathogenic virus. We sought to establish an animal model to assess TAFV disease progression and pathogenicity at our facility. We had access to two different viral stock preparations from different institutions, both originating from the single human case. Type I interferon receptor knockout mice were inoculated with TAFV stock 1 or stock 2 by the intraperitoneal route. Inoculation resulted in 100% survival with no disease regardless of viral stock preparation or infectious dose. Next, cynomolgus macaques were inoculated with TAFV stock 1 or stock 2. Inoculation with TAFV stock 1 resulted in 100% survival and robust TAFV glycoprotein-specific IgG responses including neutralizing antibodies. In contrast, macaques infected with TAFV stock 2 developed disease and were euthanized 8-11 days after infection exhibiting viremia, thrombocytopenia, and increased inflammatory mediators identified by transcriptional analysis. Histopathologic analysis of tissue samples collected at necropsy confirmed classic filovirus disease in numerous organs. Genomic differences in both stock preparations were mapped to several viral genes which may have contributed to disease severity. Taken together, we demonstrate that infection with the two TAFV stocks resulted in no disease in mice and opposing disease phenotypes in cynomolgus macaques, highlighting the impact of viral stock propagation on pathogenicity in animal models.
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- 2024
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7. Bacterial-induced or passively administered interferon gamma conditions the lung for early control of SARS-CoV-2
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Kerry L. Hilligan, Sivaranjani Namasivayam, Chad S. Clancy, Paul J. Baker, Samuel I. Old, Victoria Peluf, Eduardo P. Amaral, Sandra D. Oland, Danielle O’Mard, Julie Laux, Melanie Cohen, Nicole L. Garza, Bernard A. P. Lafont, Reed F. Johnson, Carl G. Feng, Dragana Jankovic, Olivier Lamiable, Katrin D. Mayer-Barber, and Alan Sher
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Science - Abstract
Abstract Type-1 and type-3 interferons (IFNs) are important for control of viral replication; however, less is known about the role of Type-2 IFN (IFNγ) in anti-viral immunity. We previously observed that lung infection with Mycobacterium bovis BCG achieved though intravenous (iv) administration provides strong protection against SARS-CoV-2 in mice yet drives low levels of type-1 IFNs but robust IFNγ. Here we examine the role of ongoing IFNγ responses to pre-established bacterial infection on SARS-CoV-2 disease outcomes in two murine models. We report that IFNγ is required for iv BCG induced reduction in pulmonary viral loads, an outcome dependent on IFNγ receptor expression by non-hematopoietic cells. Importantly, we show that BCG infection prompts pulmonary epithelial cells to upregulate IFN-stimulated genes with reported anti-viral activity in an IFNγ-dependent manner, suggesting a possible mechanism for the observed protection. Finally, we confirm the anti-viral properties of IFNγ by demonstrating that the recombinant cytokine itself provides strong protection against SARS-CoV-2 challenge when administered intranasally. Together, our data show that a pre-established IFNγ response within the lung is protective against SARS-CoV-2 infection, suggesting that concurrent or recent infections that drive IFNγ may limit the pathogenesis of SARS-CoV-2 and supporting possible prophylactic uses of IFNγ in COVID-19 management.
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- 2023
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8. Ecological benefits of strategically applied livestock grazing in sagebrush communities
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Kirk W. Davies, Chad S. Boyd, Jon D. Bates, Lauren N. Svejcar, and Lauren M. Porensky
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annual grasses ,cattle ,fire ,fuel ,herbivory ,shrub restoration ,Ecology ,QH540-549.5 - Abstract
Abstract There are concerns about the negative consequences of non‐native livestock grazing of sagebrush communities, especially since these communities are experiencing unpreceded threats from invasive annual grasses, altered fire regimes, and climate change. The narrative around grazing often focuses on the effects of heavy, repeated growing season use that were common historically but now are rare or localized (e.g., near water sources). At the same time, the potential for ecological benefits of strategically applied grazing is often overlooked, limiting management options that may promote desired outcomes. To improve management in the face of unprecedented threats, we synthesized the literature to investigate and identify potential ecological benefits of strategically applied livestock grazing in sagebrush communities. We found that grazing can be used to modify fine fuel characteristics in ways that decrease fire probability and severity in sagebrush communities. Pre‐fire moderate grazing may be especially important because it decreases fire severity and, thereby, promotes biodiversity and reduces postfire annual grass invasion, fire‐induced mortality of native bunchgrasses, and fire damage to soil biocrusts. Grazing can create and maintain fine fuel breaks to improve firefighter safety and fire suppression efficiency. Strategic grazing can also be used to promote desirable plant community composition. Grazing can be a valuable tool, that is currently underutilized, for achieving desired management outcomes in the sagebrush and likely other ecosystems. Improper grazing can generate severe negative consequences; therefore, successful application of grazing to achieve desired outcomes will require careful attention to plant community response and balancing management objectives with community constraints.
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- 2024
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9. Genetically diverse mouse models of SARS-CoV-2 infection reproduce clinical variation in type I interferon and cytokine responses in COVID-19
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Shelly J. Robertson, Olivia Bedard, Kristin L. McNally, Carl Shaia, Chad S. Clancy, Matthew Lewis, Rebecca M. Broeckel, Abhilash I. Chiramel, Jeffrey G. Shannon, Gail L. Sturdevant, Rebecca Rosenke, Sarah L. Anzick, Elvira Forte, Christoph Preuss, Candice N. Baker, Jeffrey M. Harder, Catherine Brunton, Steven Munger, Daniel P. Bruno, Justin B. Lack, Jacqueline M. Leung, Amirhossein Shamsaddini, Paul Gardina, Daniel E. Sturdevant, Jian Sun, Craig Martens, Steven M. Holland, Nadia A. Rosenthal, and Sonja M. Best
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Science - Abstract
Abstract Inflammation in response to severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) infection drives severity of coronavirus disease 2019 (COVID-19) and is influenced by host genetics. To understand mechanisms of inflammation, animal models that reflect genetic diversity and clinical outcomes observed in humans are needed. We report a mouse panel comprising the genetically diverse Collaborative Cross (CC) founder strains crossed to human ACE2 transgenic mice (K18-hACE2) that confers susceptibility to SARS-CoV-2. Infection of CC x K18-hACE2 resulted in a spectrum of survival, viral replication kinetics, and immune profiles. Importantly, in contrast to the K18-hACE2 model, early type I interferon (IFN-I) and regulated proinflammatory responses were required for control of SARS-CoV-2 replication in PWK x K18-hACE2 mice that were highly resistant to disease. Thus, virus dynamics and inflammation observed in COVID-19 can be modeled in diverse mouse strains that provide a genetically tractable platform for understanding anti-coronavirus immunity.
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- 2023
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10. Looking for the sponge loop: analyses of detritus on a Caribbean forereef using stable isotope and eDNA metabarcoding techniques
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Lauren K. Olinger, Beverly McClenaghan, Mehrdad Hajibabaei, Nicole Fahner, Lesley Berghuis, Hoda Rajabi, Patrick Erwin, Chad S. Lane, and Joseph R. Pawlik
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Detritus ,Coral reef ,Trophodynamics ,Porifera ,eDNA ,Stable isotope analyses ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Coral reefs are biodiverse ecosystems that rely on trophodynamic transfers from primary producers to consumers through the detrital pathway. The sponge loop hypothesis proposes that sponges consume dissolved organic carbon (DOC) and produce large quantities of detritus on coral reefs, with this turn-over approaching the daily gross primary production of the reef ecosystem. In this study, we collected samples of detritus in the epilithic algal matrix (EAM) and samples from potential sources of detritus over two seasons from the forereef at Carrie Bow Cay, Belize. We chose this location to maximize the likelihood of finding support for the sponge loop hypothesis because Caribbean reefs have higher sponge abundances than other tropical reefs worldwide and the Mesoamerican barrier reef is an archetypal coral reef ecosystem. We used stable isotope analyses and eDNA metabarcoding to determine the composition of the detritus. We determined that the EAM detritus was derived from a variety of benthic and pelagic sources, with primary producers (micro- and macroalgae) as major contributors and metazoans (Arthropoda, Porifera, Cnidaria, Mollusca) as minor contributors. None of the sponge species that reportedly produce detritus were present in EAM detritus. The cnidarian signature in EAM detritus was dominated by octocorals, with a scarcity of hard corals. The composition of detritus also varied seasonally. The negligible contribution of sponges to reef detritus contrasts with the detrital pathway originally proposed in the sponge loop hypothesis. The findings indicate a mix of pelagic and benthic sources in the calmer summer and primarily benthic sources in the more turbulent spring.
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- 2024
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11. Single-dose VSV-based vaccine protects cynomolgus macaques from disease after Taï Forest virus infection
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Paige Fletcher, Kyle L. O’Donnell, Brianna M. Doratt, Delphine C. Malherbe, Chad S. Clancy, Joseph F. Rhoderick, Friederike Feldmann, Patrick W. Hanley, Thomas G. Ksiazek, Thomas W. Geisbert, Ilhem Messaoudi, and Andrea Marzi
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Filovirus ,Taï forest ebolavirus ,vesicular stomatitis virus ,live-attenuated vaccine ,nonhuman primate ,transcriptomics ,Infectious and parasitic diseases ,RC109-216 ,Microbiology ,QR1-502 - Abstract
Taï Forest virus (TAFV) is a lesser-known ebolavirus that causes lethal infections in chimpanzees and is responsible for a single human case. Limited research has been done on this human pathogen; however, with the recent emergence of filoviruses in West Africa, further investigation and countermeasure development against this virus is warranted. We developed a vesicular stomatitis virus (VSV)-based vaccine expressing the TAFV glycoprotein as the viral antigen and assessed it for protective efficacy in nonhuman primates (NHPs). Following a single high-dose vaccination, NHPs developed antigen-specific binding and neutralizing antibodies as well as modest T cell responses. Importantly, all vaccinated NHPs were uniformly protected from disease after lethal TAFV challenge while the naïve control group succumbed to the disease. Histopathologic lesions consistent with filovirus disease were present in control NHPs but were not observed in vaccinated NHPs. Transcriptional analysis of whole blood samples obtained after vaccination and challenge was performed to gain insight into molecular underpinnings conferring protection. Differentially expressed genes (DEG) detected 7 days post-vaccination were enriched to processes associated with innate immunity and antiviral responses. Only a small number of DEG was detected in vaccinated NHPs post-challenge while over 1,000 DEG were detected in control NHPs at end-stage disease which mapped to gene ontology terms indicative of defense responses and inflammation. Taken together, this data demonstrates the effective single-dose protection of the VSV-TAFV vaccine, and its potential for use in outbreaks.
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- 2023
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12. Coumarins effectively inhibit bacterial α-carbonic anhydrases
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Simone Giovannuzzi, Chad S. Hewitt, Alessio Nocentini, Clemente Capasso, Daniel P. Flaherty, and Claudiu T. Supuran
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carbonic anhydrase ,inhibitor ,coumarins ,neisseria gonorrhoeae ,antibacterials ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Coumarins are known to act as prodrug inhibitors of mammalian α-carbonic anhydrases (CAs, EC 4.2.1.1) but they were not yet investigated for the inhibition of bacterial α-CAs. Here we demonstrate that such enzymes from the bacterial pathogens Neisseria gonorrhoeae (NgCAα) and Vibrio cholerae (VchCAα) are inhibited by a panel of simple coumarins incorporating hydroxyl, amino, ketone or carboxylic acid ester moieties in various positions of the ring system. The nature and the position of the substituents in the coumarin ring were the factors which strongly influenced inhibitory efficacy. NgCAα was inhibited with KIs in the range of 28.6–469.5 µM, whereas VchCAα with KIs in the range of 39.8–438.7 µM. The two human (h)CA isoforms included for comparison reason in the study, hCA I and II, were less prone to inhibition by these compounds, with KIs of 137–948.9 µM for hCA I and of 296.5–961.2 µM for hCA II, respectively. These findings are relevant for discovering coumarin bacterial CA inhibitors with selectivity for the bacterial over human isoform, with potential applications as novel antibacterial agents.
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- 2022
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13. Inhibition studies of bacterial α-carbonic anhydrases with phenols
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Simone Giovannuzzi, Chad S. Hewitt, Alessio Nocentini, Clemente Capasso, Gabriele Costantino, Daniel P. Flaherty, and Claudiu T. Supuran
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carbonic anhydrase ,antibacterials ,phenol ,neisseria gonorrhoeae ,vibrio cholerae ,Therapeutics. Pharmacology ,RM1-950 - Abstract
The α-class carbonic anhydrases (CAs, EC 4.2.1.1) from the bacterial pathogens Neisseria gonorrhoeae (NgCAα) and Vibrio cholerae (VchCAα) were investigated for their inhibition by a panel of phenols and phenolic acids. Mono-, di- and tri-substituted phenols incorporating additional hydroxyl/hydroxymethyl, amino, acetamido, carboxyl, halogeno and carboxyethenyl moieties were included in the study. The best NgCAα inhibitrs were phenol, 3-aminophenol, 4-hydroxy-benzylalcohol, 3-amino-4-chlorophenol and paracetamol, with KI values of 0.6–1.7 µM. The most effective VchCAα inhibitrs were phenol, 3-amino-4-chlorophenol and 4-hydroxy-benzyl-alcohol, with KI values of 0.7–1.2 µM. Small changes in the phenol scaffold led to drastic effects on the bacterial CA inhibitory activity. This class of underinvestigated bacterial CA inhibitors may thus lead to effective compounds for fighting drug resistant bacteria.
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- 2022
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14. The SSBP3 co-regulator is required for glucose homeostasis, pancreatic islet architecture, and beta-cell identity
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Eliana Toren, Jessica D. Kepple, Kristen V. Coutinho, Samuel O. Poole, Iztiba M. Deeba, Tanya H. Pierre, Yanping Liu, Maigen M. Bethea, and Chad S. Hunter
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Diabetes ,Glucose homeostasis ,Pancreatic islet ,Transcription factor ,Co-regulator ,Gene regulation ,Internal medicine ,RC31-1245 - Abstract
Objective: Transcriptional complex activity drives the development and function of pancreatic islet cells to allow for proper glucose regulation. Prior studies from our lab and others highlighted that the LIM-homeodomain transcription factor (TF), Islet-1 (Isl1), and its interacting co-regulator, Ldb1, are vital effectors of developing and adult β-cells. We further found that a member of the Single Stranded DNA-Binding Protein (SSBP) co-regulator family, SSBP3, interacts with Isl1 and Ldb1 in β-cells and primary islets (mouse and human) to impact β-cell target genes MafA and Glp1R in vitro. Members of the SSBP family stabilize TF complexes by binding directly to Ldb1 and protecting the complex from ubiquitin-mediated turnover. In this study, we hypothesized that SSBP3 has critical roles in pancreatic islet cell function in vivo, similar to the Isl1::Ldb1 complex. Methods: We first developed a novel SSBP3 LoxP allele mouse line, where Cre-mediated recombination imparts a predicted early protein termination. We bred this mouse with constitutive Cre lines (Pdx1- and Pax6-driven) to recombine SSBP3 in the developing pancreas and islet (SSBP3ΔPanc and SSBP3ΔIslet), respectively. We assessed glucose tolerance and used immunofluorescence to detect changes in islet cell abundance and markers of β-cell identity and function. Using an inducible Cre system, we also deleted SSBP3 in the adult β-cell, a model termed SSBP3Δβ-cell. We measured glucose tolerance as well as glucose-stimulated insulin secretion (GSIS), both in vivo and in isolated islets in vitro. Using islets from control and SSBP3Δβ-cell we conducted RNA-Seq and compared our results to published datasets for similar β-cell specific Ldb1 and Isl1 knockouts to identify commonly regulated target genes. Results: SSBP3ΔPanc and SSBP3ΔIslet neonates present with hyperglycemia. SSBP3ΔIslet mice are glucose intolerant by P21 and exhibit a reduction of β-cell maturity markers MafA, Pdx1, and UCN3. We observe disruptions in islet cell architecture with an increase in glucagon+ α-cells and ghrelin+ ε-cells at P10. Inducible loss of β-cell SSBP3 in SSBP3Δβ-cell causes hyperglycemia, glucose intolerance, and reduced GSIS. Transcriptomic analysis of 14-week-old SSBP3Δβ-cell islets revealed a decrease in β-cell function gene expression (Ins, MafA, Ucn3), increased stress and dedifferentiation markers (Neurogenin-3, Aldh1a3, Gastrin), and shared differentially expressed genes between SSBP3, Ldb1, and Isl1 in adult β-cells. Conclusions: SSBP3 drives proper islet identity and function, where its loss causes altered islet-cell abundance and glucose homeostasis. β-Cell SSBP3 is required for GSIS and glucose homeostasis, at least partially through shared regulation of Ldb1 and Isl1 target genes.
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- 2023
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15. ST6GAL1 sialyltransferase promotes acinar to ductal metaplasia and pancreatic cancer progression
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Nikita Bhalerao, Asmi Chakraborty, Michael P. Marciel, Jihye Hwang, Colleen M. Britain, Austin D. Silva, Isam E. Eltoum, Robert B. Jones, Katie L. Alexander, Lesley E. Smythies, Phillip D. Smith, David K. Crossman, Michael R. Crowley, Boyoung Shin, Laurie E. Harrington, Zhaoqi Yan, Maigen M. Bethea, Chad S. Hunter, Christopher A. Klug, Donald J. Buchsbaum, and Susan L. Bellis
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Oncology ,Medicine - Abstract
The role of aberrant glycosylation in pancreatic ductal adenocarcinoma (PDAC) remains an under-investigated area of research. In this study, we determined that ST6 β-galactoside α2,6 sialyltransferase 1 (ST6GAL1), which adds α2,6-linked sialic acids to N-glycosylated proteins, was upregulated in patients with early-stage PDAC and was further increased in advanced disease. A tumor-promoting function for ST6GAL1 was elucidated using tumor xenograft experiments with human PDAC cells. Additionally, we developed a genetically engineered mouse (GEM) model with transgenic expression of ST6GAL1 in the pancreas and found that mice with dual expression of ST6GAL1 and oncogenic KRASG12D had greatly accelerated PDAC progression compared with mice expressing KRASG12D alone. As ST6GAL1 imparts progenitor-like characteristics, we interrogated ST6GAL1’s role in acinar to ductal metaplasia (ADM), a process that fosters neoplasia by reprogramming acinar cells into ductal, progenitor-like cells. We verified ST6GAL1 promotes ADM using multiple models including the 266-6 cell line, GEM-derived organoids and tissues, and an in vivo model of inflammation-induced ADM. EGFR is a key driver of ADM and is known to be activated by ST6GAL1-mediated sialylation. Importantly, EGFR activation was dramatically increased in acinar cells and organoids from mice with transgenic ST6GAL1 expression. These collective results highlight a glycosylation-dependent mechanism involved in early stages of pancreatic neoplasia.
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- 2023
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16. Initial Limnology of Laguna Pozo Verde, Costa Rica: Bathymetry, Water, Sediments, and Diatoms
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Sally P. Horn, Erik N. Johanson, Mauricio Murillo Herrera, Kurt A. Haberyan, Taber Friedel, and Chad S. Lane
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lake formation ,bathymetry ,water temperatures ,lacustrine sediments ,diatoms ,General Works - Abstract
Introducción : Costa Rica tiene cientos de lagos, muchos de los cuales nunca han sido estudiados científicamente. Objetivo: Conocer limnológia de la Laguna Pozo Verde en el Parque Nacional Juan Castro Blanco, Costa Rica (~1935 m de elevación), para proporcionar datos de referencia para estudiar cambios futuros. Métodos: Medimos la profundidad y temperatura del agua y la profundidad de Secchi; sedimentos superficiales analizados; y examinó mapas e imágenes de satélite. Resultados: Aunque algunos la describen como formada por procesos volcánicos, la Laguna Pozo Verde probablemente se formó en un deslizamiento de tierra, que ocurre con frecuencia en esta zona lluviosa en la empinada ladera sur del inactivo volcán Porvenir. Nuestros sondeos mostraron una profundidad máxima de 9,25 m cerca del centro del lago. El agua era moderadamente transparente (profundidad de Secchi 2,6 m), con pH circunneutro y temperaturas de 15,9 a 18,1 °C, con estratificación débil a 0,5 m. Los sedimentos superficiales contenían 27% de materia orgánica y tenían relaciones C/N y valores de isótopos de carbono estables consistentes con algas lacustres y plantas C 3 ; Surirella angusta compuso más del 90% de las diatomeas. Conclusión: La laguna es significativamente más omera de lo informado y los sedimentos superficiales albergar una combinación de diatomeas única entre los 88 lagos examinados en Costa Rica.
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- 2023
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17. Immunological correlates of protection afforded by PHV02 live, attenuated recombinant vesicular stomatitis virus vector vaccine against Nipah virus disease
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Thomas P. Monath, Richard Nichols, Friederike Feldmann, Amanda Griffin, Elaine Haddock, Julie Callison, Kimberly Meade-White, Atsushi Okumura, Jamie Lovaglio, Patrick W. Hanley, Chad S. Clancy, Carl Shaia, Wasima Rida, and Joan Fusco
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Nipah virus ,vaccine ,recombinant VSV ,immune correlate ,neutralizing antibody ,Immunologic diseases. Allergy ,RC581-607 - Abstract
IntroductionImmune correlates of protection afforded by PHV02, a recombinant vesicular stomatitis (rVSV) vector vaccine against Nipah virus (NiV) disease, were investigated in the African green monkey (AGM) model. Neutralizing antibody to NiV has been proposed as the principal mediator of protection against future NiV infection.MethodsTwo approaches were used to determine the correlation between neutralizing antibody levels and outcomes following a severe (1,000 median lethal doses) intranasal/intratracheal (IN/IT) challenge with NiV (Bangladesh): (1) reduction in vaccine dose given 28 days before challenge and (2) challenge during the early phase of the antibody response to the vaccine.ResultsReduction in vaccine dose to very low levels led to primary vaccine failure rather than a sub-protective level of antibody. All AGMs vaccinated with the nominal clinical dose (2 × 107 pfu) at 21, 14, or 7 days before challenge survived. AGMs vaccinated at 21 days before challenge had neutralizing antibodies (geometric mean titer, 71.3). AGMs vaccinated at 7 or 14 days before challenge had either undetectable or low neutralizing antibody titers pre-challenge but had a rapid rise in titers after challenge that abrogated the NiV infection. A simple logistic regression model of the combined studies was used, in which the sole explanatory variable was pre-challenge neutralizing antibody titers. For a pre-challenge titer of 1:5, the predicted survival probability is 100%. The majority of animals with pre-challenge neutralizing titer of ≥1:20 were protected against pulmonary infiltrates on thoracic radiograms, and a majority of those with titers ≥1:40 were protected against clinical signs of illness and against a ≥fourfold antibody increase following challenge (indicating sterile immunity). Controls receiving rVSV-Ebola vaccine rapidly succumbed to NiV challenge, eliminating the innate immunity stimulated by the rVSV vector as a contributor to survival in monkeys challenged as early as 7 days after vaccination.Discussion and conclusionIt was concluded that PHV02 vaccine elicited a rapid onset of protection and that any detectable level of neutralizing antibody was a functional immune correlate of survival.
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- 2023
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18. Nuclear VANGL2 Inhibits Lactogenic Differentiation
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Stefany Rubio, Rut Molinuevo, Natalia Sanz-Gomez, Talieh Zomorrodinia, Chad S. Cockrum, Elina Luong, Lucia Rivas, Kora Cadle, Julien Menendez, and Lindsay Hinck
- Subjects
VANGL2 ,mammary gland ,nuclear localization ,Cytology ,QH573-671 - Abstract
Planar cell polarity (PCP) proteins coordinate tissue morphogenesis by governing cell patterning and polarity. Asymmetrically localized on the plasma membrane of cells, transmembrane PCP proteins are trafficked by endocytosis, suggesting they may have intracellular functions that are dependent or independent of their extracellular role, but whether these functions extend to transcriptional control remains unknown. Here, we show the nuclear localization of transmembrane, PCP protein, VANGL2, in the HCC1569 breast cancer cell line, and in undifferentiated, but not differentiated, HC11 cells that serve as a model for mammary lactogenic differentiation. The loss of Vangl2 function results in upregulation of pathways related to STAT5 signaling. We identify DNA binding sites and a nuclear localization signal in VANGL2, and use CUT&RUN to demonstrate recruitment of VANGL2 to specific DNA binding motifs, including one in the Stat5a promoter. Knockdown (KD) of Vangl2 in HC11 cells and primary mammary organoids results in upregulation of Stat5a, Ccnd1 and Csn2, larger acini and organoids, and precocious differentiation; phenotypes are rescued by overexpression of Vangl2, but not Vangl2ΔNLS. Together, these results advance a paradigm whereby PCP proteins coordinate tissue morphogenesis by keeping transcriptional programs governing differentiation in check.
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- 2024
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19. Zika virus vertical transmission in interferon receptor1-antagonized Rag1 −/− mice results in postnatal brain abnormalities and clinical disease
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Clayton W. Winkler, Chad S. Clancy, Rebecca Rosenke, and Karin E. Peterson
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Zika virus ,Pathogenesis ,Postnatal infection ,Congenital brain abnormalities ,Cell death ,Cerebellar progenitor proliferation ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract The mechanisms by which vertically transmitted Zika virus (ZIKV) causes postnatal brain development abnormalities and congenital disease remain poorly understood. Here, we optimized the established anti-IFNAR1 treated, Rag1 −/− (AIR) mouse model of ZIKV infection to examine the consequence of vertical transmission on neonate survival and postnatal brain development. We found that modulating the infectious dose and the frequency of anti-IFNAR1 treatment of pregnant mice (termed AIRlow mice) prolonged neonatal survival allowing for pathogenesis studies of brain tissues at critical postnatal time points. Postnatal AIRlow mice all had chronic ZIKV infection in the brain that was associated with decreased cortical thickness and cerebellar volume, increased gliosis, and higher levels of cell death in many brain areas including cortex, hippocampus and cerebellum when compared to controls. Interestingly, despite active infection and brain abnormalities, the neurodevelopmental program remained active in AIRlow mice as indicated by elevated mRNA expression of critical neurodevelopmental genes in the brain and enlargement of neural-progenitor rich regions of the cerebellum at a developmental time point analogous to birth in humans. Nevertheless, around the developmental time point when the brain is fully populated by neurons, AIRlow mice developed neurologic disease associated with persistent ZIKV infection in the brain, gliosis, and increased cell death. Together, these data show that vertically transmitted ZIKV infection in the brain of postnatal AIRlow mice strongly influences brain development resulting in structural abnormalities and cell death in multiple regions of the brain.
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- 2022
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20. Rapid protection of nonhuman primates against Marburg virus disease using a single low-dose VSV-based vaccineResearch in context
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Kyle L. O'Donnell, Friederike Feldmann, Benjamin Kaza, Chad S. Clancy, Patrick W. Hanley, Paige Fletcher, and Andrea Marzi
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Filovirus ,MARV Angola ,Low-dose vaccination ,Vesicular stomatitis virus ,Antibody effector functions ,Adaptive immunity ,Medicine ,Medicine (General) ,R5-920 - Abstract
Summary: Background: Marburg virus (MARV) is the causative agent of Marburg virus disease (MVD) which has a case fatality rate up to ∼90% in humans. Recently, there were cases reported in Guinea and Ghana highlighting this virus as a high-consequence pathogen potentially threatening global public health. There are no licensed treatments or vaccines available today. We used a vesicular stomatitis virus (VSV)-based vaccine expressing the MARV-Angola glycoprotein (VSV-MARV) as the viral antigen. Previously, a single dose of 1 × 107 plaque-forming units (PFU) administered 7 days before challenge resulted in uniform protection from disease in cynomolgus macaques. Methods: As we sought to lower the vaccination dose to achieve a higher number of vaccine doses per vial, we administered 1 × 105 or 1 × 103 PFU 14 days or 1 × 103 PFU 7 days before challenge to cohorts of cynomolgus macaques and investigated immunity as well as protective efficacy. Results: Vaccination resulted in uniform protection with no detectable viremia. Antigen-specific IgG responses were induced by both vaccine concentrations and were sustained until the study endpoint. Neutralizing antibody responses and antibody-dependent cellular phagocytosis were observed. The cellular response after vaccination was characterized by an early induction of NK cell activation. Additionally, antigen-specific memory T cell subsets were detected in all vaccination cohorts indicating that while the primary protective mechanism of VSV-MARV is the humoral response, a functional cellular response is also induced. Interpretation: Overall, this data highlights VSV-MARV as a viable and fast-acting MARV vaccine candidate suitable for deployment in emergency outbreak situations and supports its clinical development. Funding: This work was funded by the Intramural Research Program NIAID, NIH.
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- 2023
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21. Successful Management of a High-output Lymphorrhea via Lymphaticovenous Anastomosis after Cannulation for Cardiopulmonary Bypass
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Chad S. Sloan, MD, DDS, Heidi H. Hon, MD, and Sean C. Figy, MD
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Surgery ,RD1-811 - Abstract
Summary:. Lymphatic leaks are a rare phenomenon, but can be a troublesome and persistent problem, especially in an already debilitated patient. Historically, management of lymphorrhea has involved non- and minimally-invasive techniques of elevation, compression, aspiration, or drain placement, among others. Ligation and sclerotherapy are additional utilized techniques, directly targeting the lymphatic vessel. Microsurgical management of lymphatic leaks via lymphaticolymphatic and lymphaticovenous anastomosis has gained popularity amongst surgeons as an alternative solution to the problem. We present a patient who developed a high-output lymphocutaneous fistula after a femoral cannulation procedure for cardiopulmonary bypass for an orthotopic heart transplantation. After multiple unsuccessful attempts at traditional management options, the patient had a successful resolution of the high-output lymphorrhea via a lymphaticovenous anastomosis utilizing end-to-end coaptation with an interpositional vein graft. This case uniquely describes a lymphaticovenous anastomosis and bypass of a lymph node in the setting of significant lymphorrhea (>1.0 L per day) and associated lymphocutaneous fistula, that was effectively managed in the acute postoperative setting. Management of lymphorrhea by microsurgical techniques and lymphatic vessel manipulation in the postoperative period provides surgeons with an enhanced option for direct operative management of lymphatic vessels and their associated sequelae.
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- 2023
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22. Repurposing FDA-approved sulphonamide carbonic anhydrase inhibitors for treatment of Neisseria gonorrhoeae
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Nader S. Abutaleb, Ahmed E. M. Elhassanny, Alessio Nocentini, Chad S. Hewitt, Ahmed Elkashif, Bruce R. Cooper, Claudiu T. Supuran, Mohamed N. Seleem, and Daniel P. Flaherty
- Subjects
carbonic anhydrase inhibitors ,neisseria gonorrhoeae ,antibiotics ,drug repurposing ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Neisseria gonorrhoeae is a high-priority pathogen of concern due to the growing prevalence of resistance development against approved antibiotics. Herein, we report the anti-gonococcal activity of ethoxzolamide, the FDA-approved human carbonic anhydrase inhibitor. Ethoxzolamide displayed an MIC50, against a panel of N. gonorrhoeae isolates, of 0.125 µg/mL, 16-fold more potent than acetazolamide, although both molecules exhibited almost similar potency against the gonococcal carbonic anhydrase enzyme (NgCA) in vitro. Acetazolamide displayed an inhibition constant (Ki) versus NgCA of 74 nM, while Ethoxzolamide’s Ki was estimated to 94 nM. Therefore, the increased anti-gonococcal potency of ethoxzolamide was attributed to its increased permeability in N. gonorrhoeae as compared to that of acetazolamide. Both drugs demonstrated bacteriostatic activity against N. gonorrhoeae, exhibited post-antibiotic effects up to 10 hours, and resistance was not observed against both. Taken together, these results indicate that acetazolamide and ethoxzolamide warrant further investigation for translation into effective anti-N. gonorrhoeae agents.
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- 2022
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23. Non-additive QTL mapping of lactation traits in 124,000 cattle reveals novel recessive loci
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Edwardo G. M. Reynolds, Thomas Lopdell, Yu Wang, Kathryn M. Tiplady, Chad S. Harland, Thomas J. J. Johnson, Catherine Neeley, Katie Carnie, Richard G. Sherlock, Christine Couldrey, Stephen R. Davis, Bevin L. Harris, Richard J. Spelman, Dorian J. Garrick, and Mathew D. Littlejohn
- Subjects
Animal culture ,SF1-1100 ,Genetics ,QH426-470 - Abstract
Abstract Background Deleterious recessive conditions have been primarily studied in the context of Mendelian diseases. Recently, several deleterious recessive mutations with large effects were discovered via non-additive genome-wide association studies (GWAS) of quantitative growth and developmental traits in cattle, which showed that quantitative traits can be used as proxies of genetic disorders when such traits are indicative of whole-animal health status. We reasoned that lactation traits in cattle might also reflect genetic disorders, given the increased energy demands of lactation and the substantial stresses imposed on the animal. In this study, we screened more than 124,000 cows for recessive effects based on lactation traits. Results We discovered five novel quantitative trait loci (QTL) that are associated with large recessive impacts on three milk yield traits, with these loci presenting missense variants in the DOCK8, IL4R, KIAA0556, and SLC25A4 genes or premature stop variants in the ITGAL, LRCH4, and RBM34 genes, as candidate causal mutations. For two milk composition traits, we identified several previously reported additive QTL that display small dominance effects. By contrasting results from milk yield and milk composition phenotypes, we note differing genetic architectures. Compared to milk composition phenotypes, milk yield phenotypes had lower heritabilities and were associated with fewer additive QTL but had a higher non-additive genetic variance and were associated with a higher proportion of loci exhibiting dominance. Conclusions We identified large-effect recessive QTL which are segregating at surprisingly high frequencies in cattle. We speculate that the differences in genetic architecture between milk yield and milk composition phenotypes derive from underlying dissimilarities in the cellular and molecular representation of these traits, with yield phenotypes acting as a better proxy of underlying biological disorders through presentation of a larger number of major recessive impacts.
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- 2022
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24. Dithiocarbamates effectively inhibit the α-carbonic anhydrase from Neisseria gonorrhoeae
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Simone Giovannuzzi, Nader S. Abutaleb, Chad S. Hewitt, Fabrizio Carta, Alessio Nocentini, Mohamed N. Seleem, Daniel P. Flaherty, and Claudiu T. Supuran
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carbonic anhydrase ,inhibitor ,dithiocarbamate ,neisseria gonorrhoeae ,antibacterials ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Recently, inorganic anions and sulphonamides, two of the main classes of zinc-binding carbonic anhydrase inhibitors (CAIs), were investigated for inhibition of the α-class carbonic anhydrase (CA, EC 4.2.1.1) from Neisseria gonorrhoeae, NgCA. As an extension to our previous studies, we report that dithiocarbamates (DTCs) derived from primary or secondary amines constitute a class of efficient inhibitors of NgCA. KIs ranging between 83.7 and 827 nM were measured for a series of 31 DTCs that incorporated various aliphatic, aromatic, and heterocyclic scaffolds. A subset of DTCs were selected for antimicrobial testing against N. gonorrhoeae, and three molecules displayed minimum inhibitory concentration (MIC) values less than or equal to 8 µg/mL. As NgCA was recently validated as an antibacterial drug target, the DTCs may lead to development of novel antigonococcal agents.
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- 2022
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25. The Role of Social Support in Telehealth Utilization Among Older Adults in the United States During the COVID-19 Pandemic
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Grace S. Chung, Chad S. Ellimoottil, and Jeffrey S. McCullough
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telehealth ,social support ,COVID-19 ,aging ,Computer applications to medicine. Medical informatics ,R858-859.7 - Abstract
Background: Older adults may experience a significant digital divide and need support with using technology to transition to telehealth. This study examines the role of social support for telehealth utilization among older adults during the COVID-19 pandemic. Materials and Methods: We used data from the COVID-19 Sample Person Interview to the National Health and Aging Trends Study. Using logistic regression, we measured the association between telehealth utilization and social support. Results: Nearly one in five respondents used telehealth during the COVID-19 pandemic (weighted %: 20.6 [585/3188]). Currently living with family or friends and receipt of technical support were associated with telehealth utilization. Among residents of an assisted living facility, those who received communications technology support from the facility were more likely to use telehealth. Conclusion: Health care providers and policies should aim to reduce barriers to telehealth among older adults, with efforts such as digital literacy support and training.
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- 2021
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26. Protection from COVID-19 with a VSV-based vaccine expressing the spike and nucleocapsid proteins
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Kyle L. O’Donnell, Tylisha Gourdine, Paige Fletcher, Chad S. Clancy, and Andrea Marzi
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severe acute respiratory syndrome coronavirus 2 ,SARS-CoV-2 ,intranasal vaccination ,vesicular stomatitis virus ,hamster model ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Successful vaccine efforts countering the COVID-19 pandemic are centralized around the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike (S) protein as viral antigen and have greatly reduced the morbidity and mortality associated with COVID-19. Since the start of this pandemic, SARS-CoV-2 has evolved resulting in new variants of concern (VOC) challenging the vaccine-established immunologic memory. We show that vaccination with a vesicular stomatitis virus (VSV)-based vaccine expressing the SARS-CoV-2 S plus the conserved nucleocapsid (N) protein was protective in a hamster challenge model when a single dose was administered 28 or 10 days prior to challenge, respectively. In this study, only intranasal vaccination resulted in protection against challenge with multiple VOC highlighting that the addition of the N protein indeed improved protective efficacy. This data demonstrates the ability of a VSV-based dual-antigen vaccine to reduce viral shedding and protect from disease caused by SARS-CoV-2 VOC.
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- 2022
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27. SARS-CoV-2 disease severity and transmission efficiency is increased for airborne compared to fomite exposure in Syrian hamsters
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Julia R. Port, Claude Kwe Yinda, Irene Offei Owusu, Myndi Holbrook, Robert Fischer, Trenton Bushmaker, Victoria A. Avanzato, Jonathan E. Schulz, Craig Martens, Neeltje van Doremalen, Chad S. Clancy, and Vincent J. Munster
- Subjects
Science - Abstract
Here, Port and Yinda et al. directly compare the relative contribution of contact, fomite, and airborne transmission route of SARS-CoV-2 to disease outcome in Syrian hamsters; while intranasal and aerosol inoculation causes severe pathogenesis, fomite exposure is characterized by milder disease.
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- 2021
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28. Histopathologic Characterization of Experimental Peracute SARS-CoV-2 Infection in the Syrian Hamster
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Chad S. Clancy, Kimberly Meade-White, Carl Shaia, Greg Saturday, Heinz Feldmann, and Kyle Rosenke
- Subjects
histopathology ,immunohistochemistry ,disease modeling ,SARS-CoV-2 ,hamster ,Veterinary medicine ,SF600-1100 - Abstract
Coronavirus Infectious Disease 2019 (COVID-19) initiated a global pandemic that thus far has resulted in the death of over 6.5 million people internationally. Understanding the viral tropism during the initial, subclinical phase of infection is critical to develop targeted vaccines and therapeutics. With the continued emergence of variants of concern, particularly those that appear to have a tropism for the upper respiratory tract, understanding the complete pathogenesis is critical to develop more effective interventions. Thus far, the Syrian hamster has served as the most consistent small animal model of SARS-CoV-2 infection for mild to moderate respiratory disease. Herein, we utilize histopathology and immunohistochemistry to characterize the peracute phase of disease initiating at 6-h-post-inoculation in the intranasal inoculation route Syrian hamster model. Inflammation and viral replication initiates in the respiratory epithelium of nasal turbinates as early as 12-h-post-inoculation and moves caudally through the nasal cavity by 36-h-post inoculation. Lower respiratory involvement can be detected as early as 12-h-post inoculation in the intranasal inoculated hamster model. These data highlight the importance of rostral nasal cavity sampling at early timepoints for detection of SARS-CoV-2 in the Syrian hamster model.
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- 2023
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29. Anion inhibition studies of the α-carbonic anhydrases from Neisseria gonorrhoeae
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Alessio Nocentini, Chad S. Hewitt, Margaret D. Mastrolorenzo, Daniel P. Flaherty, and Claudiu T. Supuran
- Subjects
carbonic anhydrase ,inhibitor ,anion ,neisseria gonorrhoeae ,dithiocarbamate ,Therapeutics. Pharmacology ,RM1-950 - Abstract
The bacterial pathogen Neisseria gonorrhoeae encodes for an α-class carbonic anhydrase (CA, EC 4.2.1.1), NgCA, which was investigated for its inhibition with a series of inorganic and organic anions. Perchlorate and hexafluorophosphate did not significantly inhibit NgCA CO2 hydrase activity, whereas the halides, azide, bicarbonate, carbonate, stannate, perosmate, diphosphate, divanadate, perruthenate, and trifluoromethanesulfonate showed inhibition constants in the range of 1.3–9.6 mM. Anions/small molecules such as cyanate, thiocyanate, nitrite, nitrate, bisulphite, sulphate, hydrogensulfide, phenylboronic acid, phenylarsonic acid, selenate, tellurate, tetraborate, perrhenate, peroxydisulfate, selenocyanate, iminodisulfonate, and fluorosulfonate showed KIs in the range of 0.15–1.0 mM. The most effective inhibitors detected in this study were sulfamide, sulfamate, trithiocarbonate and N,N-diethyldithiocarbamate, which had KIs in the range of 5.1–88 µM. These last compounds incorporating the CS2- zinc-binding group may be used as leads for developing even more effective NgCA inhibitors in addition to the aromatic/heterocyclic sulphonamides, as this enzyme was recently validated as an antibacterial drug target for obtaining novel antigonococcal agents
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- 2021
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30. Rapid Protection from COVID-19 in Nonhuman Primates Vaccinated Intramuscularly but Not Intranasally with a Single Dose of a Vesicular Stomatitis Virus-Based Vaccine
- Author
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Wakako Furuyama, Kyle Shifflett, Amanda N. Pinski, Amanda J. Griffin, Friederike Feldmann, Atsushi Okumura, Tylisha Gourdine, Allen Jankeel, Jamie Lovaglio, Patrick W. Hanley, Tina Thomas, Chad S. Clancy, Ilhem Messaoudi, Kyle L. O’Donnell, and Andrea Marzi
- Subjects
VSV ,vesicular stomatitis virus ,SARS-CoV-2 ,i.m. ,i.n. ,rhesus macaques ,Microbiology ,QR1-502 - Abstract
ABSTRACT The ongoing pandemic of coronavirus (CoV) disease 2019 (COVID-19) continues to exert a significant burden on health care systems worldwide. With limited treatments available, vaccination remains an effective strategy to counter transmission of severe acute respiratory syndrome CoV 2 (SARS-CoV-2). Recent discussions concerning vaccination strategies have focused on identifying vaccine platforms, number of doses, route of administration, and time to reach peak immunity against SARS-CoV-2. Here, we generated a single-dose, fast-acting vesicular stomatitis virus (VSV)-based vaccine derived from the licensed Ebola virus (EBOV) vaccine rVSV-ZEBOV, expressing the SARS-CoV-2 spike protein and the EBOV glycoprotein (VSV-SARS2-EBOV). Rhesus macaques vaccinated intramuscularly (i.m.) with a single dose of VSV-SARS2-EBOV were protected within 10 days and did not show signs of COVID-19 pneumonia. In contrast, intranasal (i.n.) vaccination resulted in limited immunogenicity and enhanced COVID-19 pneumonia compared to results for control animals. While both i.m. and i.n. vaccination induced neutralizing antibody titers, only i.m. vaccination resulted in a significant cellular immune response. RNA sequencing data bolstered these results by revealing robust activation of the innate and adaptive immune transcriptional signatures in the lungs of i.m. vaccinated animals only. Overall, the data demonstrate that VSV-SARS2-EBOV is a potent single-dose COVID-19 vaccine candidate that offers rapid protection based on the protective efficacy observed in our study. IMPORTANCE The vesicular stomatitis virus (VSV) vaccine platform rose to fame in 2019, when a VSV-based Ebola virus (EBOV) vaccine was approved by the European Medicines Agency and the U.S. Food and Drug Administration for human use against the deadly disease. Here, we demonstrate the protective efficacy of a VSV-EBOV-based COVID-19 vaccine against challenge in nonhuman primates (NHPs). When a single dose of the VSV-SARS2-EBOV vaccine was administered intramuscularly (i.m.), the NHPs were protected from COVID-19 within 10 days. In contrast, if the vaccine was administered intranasally, there was no benefit from the vaccine and the NHPs developed pneumonia. The i.m. vaccinated NHPs quickly developed antigen-specific IgG, including neutralizing antibodies. Transcriptional analysis highlighted the development of protective innate and adaptive immune responses in the i.m. vaccination group only.
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- 2022
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31. Islet transplantation into brown adipose tissue can delay immune rejection
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Jessica D. Kepple, Jessie M. Barra, Martin E. Young, Chad S. Hunter, and Hubert M. Tse
- Subjects
Endocrinology ,Transplantation ,Medicine - Abstract
Type 1 diabetes is an autoimmune disease characterized by insulin-producing β cell destruction. Although islet transplantation restores euglycemia and improves patient outcomes, an ideal transplant site remains elusive. Brown adipose tissue (BAT) has a highly vascularized and antiinflammatory microenvironment. Because these tissue features can promote islet graft survival, we hypothesized that islets transplanted into BAT will maintain islet graft and BAT function while delaying immune-mediated rejection. We transplanted syngeneic and allogeneic islets into BAT or under the kidney capsule of streptozotocin-induced diabetic NOD.Rag and NOD mice to investigate islet graft function, BAT function, metabolism, and immune-mediated rejection. Islet grafts within BAT restored euglycemia similarly to kidney capsule controls. Islets transplanted in BAT maintained expression of islet hormones and transcription factors and were vascularized. Compared with those in kidney capsule and euglycemic mock-surgery controls, no differences in glucose or insulin tolerance, thermogenic regulation, or energy expenditure were observed with islet grafts in BAT. Immune profiling of BAT revealed enriched antiinflammatory macrophages and T cells. Compared with the kidney capsule control, there were significant delays in autoimmune and allograft rejection of islets transplanted in BAT, possibly due to increased antiinflammatory immune populations. Our data support BAT as an alternative islet transplant site that may improve graft survival.
- Published
- 2022
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32. Optimization of Single-Dose VSV-Based COVID-19 Vaccination in Hamsters
- Author
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Kyle L. O’Donnell, Chad S. Clancy, Amanda J. Griffin, Kyle Shifflett, Tylisha Gourdine, Tina Thomas, Carrie M. Long, Wakako Furuyama, and Andrea Marzi
- Subjects
severe acute respiratory syndrome coronavirus-2 ,SARS-CoV-2 ,vesicular stomatitis virus ,VSV-SARS2 ,VSV-EBOV ,rVSV-ZEBOV GP ,Immunologic diseases. Allergy ,RC581-607 - Abstract
The ongoing COVID-19 pandemic has resulted in global effects on human health, economic stability, and social norms. The emergence of viral variants raises concerns about the efficacy of existing vaccines and highlights the continued need for the development of efficient, fast-acting, and cost-effective vaccines. Here, we demonstrate the immunogenicity and protective efficacy of two vesicular stomatitis virus (VSV)-based vaccines encoding the SARS-CoV-2 spike protein either alone (VSV-SARS2) or in combination with the Ebola virus glycoprotein (VSV-SARS2-EBOV). Intranasally vaccinated hamsters showed an early CD8+ T cell response in the lungs and a greater antigen-specific IgG response, while intramuscularly vaccinated hamsters had an early CD4+ T cell and NK cell response. Intranasal vaccination resulted in protection within 10 days with hamsters not showing clinical signs of pneumonia when challenged with three different SARS-CoV-2 variants. This data demonstrates that VSV-based vaccines are viable single-dose, fast-acting vaccine candidates that are protective from COVID-19.
- Published
- 2022
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33. Hemispheric dissociations in regions supporting auditory sentence comprehension in older adults
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Yune Sang Lee, Chad S. Rogers, Murray Grossman, Arthur Wingfield, and Jonathan E. Peelle
- Subjects
Aging ,Language ,Syntax ,Cognitive decline ,Compensation ,Neuroimaging ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
We investigated how the aging brain copes with acoustic and syntactic challenges during spoken language comprehension. Thirty-eight healthy adults aged 54 – 80 years (M = 66 years) participated in an fMRI experiment wherein listeners indicated the gender of an agent in short spoken sentences that varied in syntactic complexity (object-relative vs subject-relative center-embedded clause structures) and acoustic richness (high vs low spectral detail, but all intelligible). We found widespread activity throughout a bilateral frontotemporal network during successful sentence comprehension. Consistent with prior reports, bilateral inferior frontal gyrus and left posterior superior temporal gyrus were more active in response to object-relative sentences than to subject-relative sentences. Moreover, several regions were significantly correlated with individual differences in task performance: Activity in right frontoparietal cortex and left cerebellum (Crus I & II) showed a negative correlation with overall comprehension. By contrast, left frontotemporal areas and right cerebellum (Lobule VII) showed a negative correlation with accuracy specifically for syntactically complex sentences. In addition, laterality analyses confirmed a lack of hemispheric lateralization in activity evoked by sentence stimuli in older adults. Importantly, we found different hemispheric roles, with a left-lateralized core language network supporting syntactic operations, and right-hemisphere regions coming into play to aid in general cognitive demands during spoken sentence processing. Together our findings support the view that high levels of language comprehension in older adults are maintained by a close interplay between a core left hemisphere language network and additional neural resources in the contralateral hemisphere.
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- 2022
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34. The transcriptional co-regulator LDB1 is required for brown adipose function
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Jessica D. Kepple, Yanping Liu, Teayoun Kim, Cheryl Cero, James W. Johnson, Glenn C. Rowe, Aaron M. Cypess, Kirk M. Habegger, Martin Young, and Chad S. Hunter
- Subjects
LDB1 ,Transcriptional co-regulator ,Brown adipocyte ,Thermogenesis ,Glucose ,Lipid ,Internal medicine ,RC31-1245 - Abstract
Objective: Brown adipose tissue (BAT) is critical for thermogenesis and glucose/lipid homeostasis. Exploiting the energy uncoupling capacity of BAT may reveal targets for obesity therapies. This exploitation requires a greater understanding of the transcriptional mechanisms underlying BAT function. One potential regulator of BAT is the transcriptional co-regulator LIM domain-binding protein 1 (LDB1), which acts as a dimerized scaffold, allowing for the assembly of transcriptional complexes. Utilizing a global LDB1 heterozygous mouse model, we recently reported that LDB1 might have novel roles in regulating BAT function. However, direct evidence for the LDB1 regulation of BAT thermogenesis and substrate utilization has not been elucidated. We hypothesize that brown adipocyte-expressed LDB1 is required for BAT function. Methods: LDB1-deficient primary cells and brown adipocyte cell lines were assessed via qRT-PCR and western blotting for altered mRNA and protein levels to define the brown adipose-specific roles. We conducted chromatin immunoprecipitation with primary BAT tissue and immortalized cell lines. Potential transcriptional partners of LDB1 were revealed by conducting LIM factor surveys via qRT-PCR in mouse and human brown adipocytes. We developed a Ucp1-Cre-driven LDB1-deficiency mouse model, termed Ldb1ΔBAT, to test LDB1 function in vivo. Glucose tolerance and uptake were assessed at thermoneutrality via intraperitoneal glucose challenge and glucose tracer studies. Insulin tolerance was measured at thermoneutrality and after stimulation with cold or the administration of the β3-adrenergic receptor (β3-AR) agonist CL316,243. Additionally, we analyzed plasma insulin via ELISA and insulin signaling via western blotting. Lipid metabolism was evaluated via BAT weight, histology, lipid droplet morphometry, and the examination of lipid-associated mRNA. Finally, energy expenditure and cold tolerance were evaluated via indirect calorimetry and cold challenges. Results: Reducing Ldb1 in vitro and in vivo resulted in altered BAT-selective mRNA, including Ucp1, Elovl3, and Dio2. In addition, there was reduced Ucp1 induction in vitro. Impacts on gene expression may be due, in part, to LDB1 occupying Ucp1 upstream regulatory domains. We also identified BAT-expressed LIM-domain factors Lmo2, Lmo4, and Lhx8, which may partner with LDB1 to mediate activity in brown adipocytes. Additionally, we observed LDB1 enrichment in human brown adipose. In vivo analysis revealed LDB1 is required for whole-body glucose and insulin tolerance, in part through reduced glucose uptake into BAT. In Ldb1ΔBAT tissue, we found significant alterations in insulin-signaling effectors. An assessment of brown adipocyte morphology and lipid droplet size revealed larger and more unilocular brown adipocytes in Ldb1ΔBAT mice, particularly after a cold challenge. Alterations in lipid handling were further supported by reductions in mRNA associated with fatty acid oxidation and mitochondrial respiration. Finally, LDB1 is required for energy expenditure and cold tolerance in both male and female mice. Conclusions: Our findings support LDB1 as a regulator of BAT function. Furthermore, given LDB1 enrichment in human brown adipose, this co-regulator may have conserved roles in human BAT.
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- 2021
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35. Partners in Crime: Beta-Cells and Autoimmune Responses Complicit in Type 1 Diabetes Pathogenesis
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Eliana Toren, KaLia S. Burnette, Ronadip R. Banerjee, Chad S. Hunter, and Hubert M. Tse
- Subjects
beta-cell ,beta-cell heterogeneity ,pancreatic islet ,autoimmunity ,ER stress ,oxidative stress ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Type 1 diabetes (T1D) is an autoimmune disease characterized by autoreactive T cell-mediated destruction of insulin-producing pancreatic beta-cells. Loss of beta-cells leads to insulin insufficiency and hyperglycemia, with patients eventually requiring lifelong insulin therapy to maintain normal glycemic control. Since T1D has been historically defined as a disease of immune system dysregulation, there has been little focus on the state and response of beta-cells and how they may also contribute to their own demise. Major hurdles to identifying a cure for T1D include a limited understanding of disease etiology and how functional and transcriptional beta-cell heterogeneity may be involved in disease progression. Recent studies indicate that the beta-cell response is not simply a passive aspect of T1D pathogenesis, but rather an interplay between the beta-cell and the immune system actively contributing to disease. Here, we comprehensively review the current literature describing beta-cell vulnerability, heterogeneity, and contributions to pathophysiology of T1D, how these responses are influenced by autoimmunity, and describe pathways that can potentially be exploited to delay T1D.
- Published
- 2021
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36. Age-Related Differences in Auditory Cortex Activity During Spoken Word Recognition
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Chad S. Rogers, Michael S. Jones, Sarah McConkey, Brent Spehar, Kristin J. Van Engen, Mitchell S. Sommers, and Jonathan E. Peelle
- Subjects
Language. Linguistic theory. Comparative grammar ,P101-410 ,Neurophysiology and neuropsychology ,QP351-495 - Abstract
AbstractUnderstanding spoken words requires the rapid matching of a complex acoustic stimulus with stored lexical representations. The degree to which brain networks supporting spoken word recognition are affected by adult aging remains poorly understood. In the current study we used fMRI to measure the brain responses to spoken words in two conditions: an attentive listening condition, in which no response was required, and a repetition task. Listeners were 29 young adults (aged 19–30 years) and 32 older adults (aged 65–81 years) without self-reported hearing difficulty. We found largely similar patterns of activity during word perception for both young and older adults, centered on the bilateral superior temporal gyrus. As expected, the repetition condition resulted in significantly more activity in areas related to motor planning and execution (including the premotor cortex and supplemental motor area) compared to the attentive listening condition. Importantly, however, older adults showed significantly less activity in probabilistically defined auditory cortex than young adults when listening to individual words in both the attentive listening and repetition tasks. Age differences in auditory cortex activity were seen selectively for words (no age differences were present for 1-channel vocoded speech, used as a control condition), and could not be easily explained by accuracy on the task, movement in the scanner, or hearing sensitivity (available on a subset of participants). These findings indicate largely similar patterns of brain activity for young and older adults when listening to words in quiet, but suggest less recruitment of auditory cortex by the older adults.
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- 2020
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37. To burn or not to burn: Comparing reintroducing fire with cutting an encroaching conifer for conservation of an imperiled shrub‐steppe
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Kirk W. Davies, Roxanne C. Rios, Jon D. Bates, Dustin D. Johnson, Jay Kerby, and Chad S. Boyd
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ecological memory ,exotic annual grass ,fire surrogate ,juniper ,sagebrush ,woody plant encroachment ,Ecology ,QH540-549.5 - Abstract
Abstract Woody vegetation has increased on rangelands worldwide for the past 100–200 years, often because of reduced fire frequency. However, there is a general aversion to reintroducing fire, and therefore, fire surrogates are often used in its place to reverse woody plant encroachment. Determining the conservation effectiveness of reintroducing fire compared with fire surrogates over different time scales is needed to improve conservation efforts. We evaluated the conservation effectiveness of reintroducing fire with a fire surrogate (cutting) applied over the last ~30 years to control juniper (Juniperus occidentalis Hook.) encroachment on 77 sagebrush‐steppe sites. Critical to conservation of this imperiled ecosystem is to limit juniper, not encourage exotic annual grasses, and promote sagebrush dominance of the overstory. Reintroducing fire was more effective than cutting at reducing juniper abundance and extending the period of time that juniper was not dominating the plant community. Sagebrush was reduced more with burning than cutting. Sagebrush, however, was predicted to be a substantial component of the overstory longer in burned than cut areas because of more effective juniper control. Variation in exotic annual grass cover was explained by environmental variables and perennial grass abundance, but not treatment, with annual grasses being problematic on hotter and drier sites with less perennial grass. This suggests that ecological memory varies along an environmental gradient. Reintroducing fire was more effective than cutting at conserving sagebrush‐steppe encroached by juniper over extended time frames; however, cutting was more effective for short‐term conservation. This suggests fire and fire surrogates both have critical roles in conservation of imperiled ecosystems.
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- 2019
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38. Recovery of the herbaceous component of degraded sagebrush steppe is unimpeded by 75 years of moderate cattle grazing
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Stella M. Copeland, Kirk W. Davies, Chad S. Boyd, and Jonathan D. Bates
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Great Basin ,livestock grazing ,plant community ,plant diversity ,rangeland ,Ecology ,QH540-549.5 - Abstract
Abstract Understanding the effects of contemporary cattle grazing on herbaceous perennial communities in big sagebrush steppe is important for managing for wildlife habitat, plant diversity, and productivity, yet potentially complicated by legacy impacts of historic, often higher intensity, livestock grazing. Here, we evaluate whether recovery of herbaceous communities in eastern Oregon, USA, after the cessation of intense spring sheep grazing (1935) was affected by moderate cattle grazing in paired plots with or without grazing over the past 75 yr (1936–2011). We tested for the effects of cattle grazing on herbaceous community recovery, as indicated by changes over time in plant density, and composition, as measured by Bray–Curtis dissimilarity. We also included current and prior to sampling year precipitation anomalies, to account for the weather effects, and a random term for pasture location of plot pairs to include potential subtle differences in abiotic environment and grazing management. We further tested whether time since cessation of intense sheep grazing and moderate cattle grazing were associated with convergence or divergence in community composition indicated by changes in evenness, richness, species relative abundance (rank order), and turnover or species appearance or disappearance. Total perennial herbaceous, forb, and grass density increased over time in sites grazed and ungrazed by cattle, though species varied in the direction of their response to contemporary cattle grazing. Community composition metrics indicated convergence over time including increasing evenness, decreasing Bray–Curtis dissimilarity, decreasing shifts in species relative abundance (rank order), and lower rates of species turnover (and gain and loss). Contemporary cattle grazing was not associated with convergence or divergence in composition. Precipitation anomalies for the current or prior water year were only occasionally significant in herbaceous density and community composition change models. Our results indicate similar long‐term recovery trajectories occurred in sites with moderate cattle grazing or removal of all livestock following cessation of intense sheep grazing. Management planning and resource assessment focused on herbaceous perennial communities in sagebrush steppe should seek to separate the impacts of historic from contemporary livestock grazing practices.
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- 2021
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39. Glucagon receptor signaling regulates weight loss via central KLB receptor complexes
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Shelly R. Nason, Jessica Antipenko, Natalie Presedo, Stephen E. Cunningham, Tanya H. Pierre, Teayoun Kim, Jodi R. Paul, Cassie Holleman, Martin E. Young, Karen L. Gamble, Brian Finan, Richard DiMarchi, Chad S. Hunter, Alexei Kharitonenkov, and Kirk M. Habegger
- Subjects
Metabolism ,Medicine - Abstract
Glucagon regulates glucose and lipid metabolism and promotes weight loss. Thus, therapeutics stimulating glucagon receptor (GCGR) signaling are promising for obesity treatment; however, the underlying mechanism(s) have yet to be fully elucidated. We previously identified that hepatic GCGR signaling increases circulating fibroblast growth factor 21 (FGF21), a potent regulator of energy balance. We reported that mice deficient for liver Fgf21 are partially resistant to GCGR-mediated weight loss, implicating FGF21 as a regulator of glucagon’s weight loss effects. FGF21 signaling requires an obligate coreceptor (β-Klotho, KLB), with expression limited to adipose tissue, liver, pancreas, and brain. We hypothesized that the GCGR-FGF21 system mediates weight loss through a central mechanism. Mice deficient for neuronal Klb exhibited a partial reduction in body weight with chronic GCGR agonism (via IUB288) compared with controls, supporting a role for central FGF21 signaling in GCGR-mediated weight loss. Substantiating these results, mice with central KLB inhibition via a pharmacological KLB antagonist, 1153, also displayed partial weight loss. Central KLB, however, is dispensable for GCGR-mediated improvements in plasma cholesterol and liver triglycerides. Together, these data suggest GCGR agonism mediates part of its weight loss properties through central KLB and has implications for future treatments of obesity and metabolic syndrome.
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- 2021
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40. Machine learning, waveform preprocessing and feature extraction methods for classification of acoustic startle waveforms
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Timothy J. Fawcett, Chad S. Cooper, Ryan J. Longenecker, and Joseph P. Walton
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Acoustic startle reflex ,Machine learning ,Waveform preprocessing ,Ensemble modeling ,Science - Abstract
The acoustic startle response (ASR) is an involuntary muscle reflex that occurs in response to a transient loud sound and is a highly-utilized method of assessing hearing status in animal models. Currently, a high level of variability exists in the recording and interpretation of ASRs due to the lack of standardization for collecting and analyzing these measures. An ensembled machine learning model was trained to predict whether an ASR waveform is a startle or non-startle using highly-predictive features extracted from normalized ASR waveforms collected from young adult CBA/CaJ mice. Features were extracted from the normalized waveform as well as the power spectral density estimates and continuous wavelet transforms of the normalized waveform. Machine learning models utilizing methods from different families of algorithms were individually trained and then ensembled together, resulting in an extremely robust model. • ASR waveforms were normalized using the mean and standard deviation computed before the startle elicitor was presented • 9 machine learning algorithms from 4 different families of algorithms were individually trained using features extracted from the normalized ASR waveforms • Trained machine learning models were ensembled to produce an extremely robust classifier
- Published
- 2021
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41. Novel finding of multiple inflamed follicular cysts in patients with candle syndrome- A report of two cases
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Tyler J. Holley, Melissa Moutray, Chad S. Sloan, Indraneel Bhattacharyya, and Valmont P. Desa
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CANDLE Syndrome ,Follicular cyst ,Inflamed follicular cyst ,Surgery ,RD1-811 - Abstract
CANDLE Syndrome (Chronic Atypical Neutrophilic Dermatosis with Lipodystrophy and Elevated Temperature) is an autoinflammatory disease. Clinical characteristics include recurrent fevers, organ inflammation, skin lesions, anemia, lipodystrophy, basal ganglion calcifications, and delayed physical development. Orofacial manifestations include facial lipodystrophy, swollen eyelids, thick lips, macroglossia, generalized microdontia, and jaw osteopenia. We describe a novel finding of multiple inflamed follicular cysts in two patients, diagnosed with CANDLE syndrome, who presented with radiolucent mandibular lesions associated with displaced permanent molars and mandibular bony expansion. To the best of our knowledge, the finding of inflamed follicular cysts in patients with CANDLE syndrome has never been reported in literature. We speculate that the intense inflammation seen in both cases could possibly corelate with the inflammatory dysregulation and generalized organ inflammation seen in this disease process. This new finding of radiolucent mandibular cystic lesions provides further insight into the extent and characterization of the syndrome.
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- 2020
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42. NHERI Lehigh Experimental Facility With Large-Scale Multi-Directional Hybrid Simulation Testing Capabilities
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Liang Cao, Thomas Marullo, Safwan Al-Subaihawi, Chinmoy Kolay, Alia Amer, James Ricles, Richard Sause, and Chad S. Kusko
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large-scale experiments ,real-time hybrid simulation ,multi-directional ,structural control ,multi-hazard ,Engineering (General). Civil engineering (General) ,TA1-2040 ,City planning ,HT165.5-169.9 - Abstract
The NHERI Lehigh Experimental Facility, as part of the NSF-funded Natural Hazards Engineering Research Infrastructure (NHERI) program, was established in 2016 as an open-access facility. This facility enables researchers to conduct state-of-art research on natural hazard mitigation in civil infrastructure systems, including high-performance numerical and physical testing to improve the resilience and sustainability of the civil infrastructure against natural hazards. The facility has the unique ability to conduct real-time multi-directional hybrid simulation (RTHS) on large-scale structural systems using 3D non-linear numerical models combined with large-scale physical models of structural and non-structural components. The Lehigh Experimental Facility possesses testbeds that include a lateral load-resisting system characterization testbed, a non-structural component multi-directional dynamic loading simulator, full-scale and reduced-scale damper testbeds, a tsunami and storm surge debris impact force testbed, and a soil-foundation structure interaction testbed. This paper describes the infrastructure and capabilities of the NHERI Lehigh Experimental Facility. Developments by the facility in advancing large-scale RTHS are detailed. Examples of research projects performed by users of the facility are then provided, including large-scale RTHS of steel frame buildings with magneto-rheological (MR) dampers and non-linear viscous dampers subject to strong earthquake ground motions; 3D multi-hazard large-scale RTHS of tall steel buildings subject to multi-directional wind and earthquake ground motions; characterization of a novel semi-active friction device based on band brake technology; and testing of cross-laminated timber self-centering coupled wall-floor diaphragm-gravity systems involving multi-directional loading.
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- 2020
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43. VSV-Based Vaccines Reduce Virus Shedding and Viral Load in Hamsters Infected with SARS-CoV-2 Variants of Concern
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Kyle L. O’Donnell, Tylisha Gourdine, Paige Fletcher, Kyle Shifflett, Wakako Furuyama, Chad S. Clancy, and Andrea Marzi
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severe acute respiratory syndrome coronavirus-2 ,COVID-19 ,vesicular stomatitis virus ,intranasal vaccination ,Medicine - Abstract
The continued progression of the COVID-19 pandemic can partly be attributed to the ability of SARS-CoV-2 to mutate and introduce new viral variants. Some of these variants with the potential to spread quickly and conquer the globe are termed variants of concern (VOC). The existing vaccines implemented on a global scale are based on the ancestral strain, which has resulted in increased numbers of breakthrough infections as these VOC have emerged. It is imperative to show protection against VOC infection with newly developed vaccines. Previously, we evaluated two vesicular stomatitis virus (VSV)-based vaccines expressing the SARS-CoV-2 spike protein alone (VSV-SARS2) or in combination with the Ebola virus glycoprotein (VSV-SARS2-EBOV) and demonstrated their fast-acting potential. Here, we prolonged the time to challenge; we vaccinated hamsters intranasally (IN) or intramuscularly 28 days prior to infection with three SARS-CoV-2 VOC—the Alpha, Beta, and Delta variants. IN vaccination with either the VSV-SARS2 or VSV-SARS2-EBOV resulted in the highest protective efficacy as demonstrated by decreased virus shedding and lung viral load of vaccinated hamsters. Histopathologic analysis of the lungs revealed the least amount of lung damage in the IN-vaccinated animals regardless of the challenge virus. This data demonstrates the ability of a VSV-based vaccine to not only protect from disease caused by SARS-CoV-2 VOC but also reduce viral shedding.
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- 2022
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44. Rational Development and Characterization of a Ubiquitin Variant with Selectivity for Ubiquitin C-Terminal Hydrolase L3
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Chad S. Hewitt, Chittaranjan Das, and Daniel P. Flaherty
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UCHL3 ,ubiquitin variants ,DUBs ,activity-based probes ,Microbiology ,QR1-502 - Abstract
There is currently a lack of reliable methods and strategies to probe the deubiquitinating enzyme UCHL3. Current small molecules reported for this purpose display reduced potency and selectivity in cellular assays. To bridge this gap and provide an alternative approach to probe UCHL3, our group has carried out the rational design of ubiquitin-variant activity-based probes with selectivity for UCHL3 over the closely related UCHL1 and other DUBs. The approach successfully produced a triple-mutant ubiquitin variant activity-based probe, UbVQ40V/T66K/V70F-PRG, that was ultimately 20,000-fold more selective for UCHL3 over UCHL1 when assessed by rate of inactivation assays. This same variant was shown to selectively form covalent adducts with UCHL3 in MDA-MB-231 breast cancer cells and no reactivity toward other DUBs expressed. Overall, this study demonstrates the feasibility of the approach and also provides insight into how this approach may be applied to other DUB targets.
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- 2022
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45. Effects of nitrogen fertilization and bioenergy crop type on topsoil organic carbon and total Nitrogen contents in middle Tennessee USA.
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Jianwei Li, Siyang Jian, Chad S Lane, YueHan Lu, Xiaorui He, Gangsheng Wang, Melanie A Mayes, Kudjo E Dzantor, and Dafeng Hui
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Medicine ,Science - Abstract
Nitrogen (N) fertilization affects bioenergy crop growth and productivity and consequently carbon (C) and N contents in soil, it however remains unclear whether N fertilization and crop type individually or interactively influence soil organic carbon (SOC) and total N (TN). In a three-year long fertilization experiment in switchgrass (SG: Panicum virgatum L.) and gamagrass (GG: Tripsacum dactyloides L.) croplands in Middle Tennessee USA, soil samples (0-15cm) were collected in plots with no N input (NN), low N input (LN: 84 kg N ha-1 yr-1 in urea) and high N input (HN: 168 kg N ha-1 yr-1 in urea). Besides SOC and TN, the aboveground plant biomass was also quantified. In addition to a summary of published root morphology data based on a separated mesocosm experiment, the root leachable dissolved organic matter (DOM) of both crops was also measured using archived samples. Results showed no significant interaction of N fertilization and crop type on SOC, TN or plant aboveground biomass (ABG). Relative to NN, HN (not LN) significantly increased SOC and TN in both crops. Though SG showed a 15-68% significantly higher ABG than GG, GG showed a 9.3-12% significantly higher SOC and TN than SG. The positive linear relationships of SOC or TN with ABG were identified for SG. However, GG showed structurally more complex and less readily decomposed root DOM, a larger root volume, total root length and surface area than SG. Collectively, these suggested that intensive N fertilization could increase C and N stocks in bioenergy cropland soils but these effects may be more likely mediated by the aboveground biomass in SG and root chemistry and morphology in GG. Future studies are expected to examine the root characteristics in different bioenergy croplands under the field fertilization experiment.
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- 2020
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46. Circulating whole genome miRNA expression corresponds to progressive right ventricle enlargement and systolic dysfunction in adults with tetralogy of Fallot.
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Chad S Weldy, Saad Ali Syed, Myriam Amsallem, Dong-Qing Hu, Xuhuai Ji, Rajesh Punn, Anne Taylor, Brittany Navarre, and Sushma Reddy
- Subjects
Medicine ,Science - Abstract
IntroductionThe adult congenital heart disease population with repaired tetralogy of Fallot (TOF) is subject to chronic volume and pressure loading leading to a 40% probability of right ventricular (RV) failure by the 3rd decade of life. We sought to identify a non-invasive signature of adverse RV remodeling using peripheral blood microRNA (miRNA) profiling to better understand the mechanisms of RV failure.MethodsDemographic, clinical data, and blood samples were collected from adults with repaired TOF (N = 20). RNA was isolated from the buffy coat of peripheral blood and whole genome miRNA expression was profiled using Agilent's global miRNA microarray platform. Fold change, pathway analysis, and unbiased hierarchical clustering of miRNA expression was performed and correlated to RV size and function assessed by echocardiography performed at or near the time of blood collection.ResultsMiRNA expression was profiled in the following groups: 1. normal RV size (N = 4), 2. mild/moderate RV enlargement (N = 11) and 3. severe RV enlargement (N = 5). 267 miRNAs were downregulated, and 66 were upregulated across the three groups (fold change >2.0, FDR corrected pConclusionAdults with TOF have a distinct miRNA profile with progressive RV enlargement and dysfunction implicating cell cycle dysregulation and upregulation in extracellular matrix and fatty acid metabolism. These data suggest peripheral blood miRNA can provide insight into the mechanisms of RV failure and can potentially be used for monitoring disease progression and to develop RV specific therapeutics to prevent RV failure in TOF.
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- 2020
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47. Optimization and Anti-Cancer Properties of Fluoromethylketones as Covalent Inhibitors for Ubiquitin C-Terminal Hydrolase L1
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Aaron D. Krabill, Hao Chen, Sajjad Hussain, Chad S. Hewitt, Ryan D. Imhoff, Christine S. Muli, Chittaranjan Das, Paul J. Galardy, Michael K. Wendt, and Daniel P. Flaherty
- Subjects
covalent inhibitors ,fluoromethylketones ,UCHL1 inhibitors ,deubiquitinases ,Organic chemistry ,QD241-441 - Abstract
The deubiquitinating enzyme (DUB) UCHL1 is implicated in various disease states including neurodegenerative disease and cancer. However, there is a lack of quality probe molecules to gain a better understanding on UCHL1 biology. To this end a study was carried out to fully characterize and optimize the irreversible covalent UCHL1 inhibitor VAEFMK. Structure-activity relationship studies identified modifications to improve activity versus the target and a full cellular characterization was carried out for the first time with this scaffold. The studies produced a new inhibitor, 34, with an IC50 value of 7.7 µM against UCHL1 and no observable activity versus the closest related DUB UCHL3. The molecule was also capable of selectively inhibiting UCHL1 in cells and did not demonstrate any discernible off-target toxicity. Finally, the molecule was used for initial probe studies to assess the role of UCHL1 role in proliferation of myeloma cells and migration behavior in small cell lung cancer cells making 34 a new tool to be used in the biological evaluation of UCHL1.
- Published
- 2021
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48. Camelid Inoculation with Middle East Respiratory Syndrome Coronavirus: Experimental Models of Reservoir Host Infection
- Author
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Danielle R. Adney, Chad S. Clancy, Richard A. Bowen, and Vincent J. Munster
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MERS-CoV ,camelid ,coronavirus pathogenesis ,animal coronaviruses ,Microbiology ,QR1-502 - Abstract
Within the past two decades, three zoonotic betacoronaviruses have been associated with outbreaks causing severe respiratory disease in humans. Of these, Middle East respiratory s yndrome coronavirus (MERS-CoV) is the only zoonotic coronavirus that is known to consistently result in frequent zoonotic spillover events from the proximate reservoir host—the dromedary camel. A comprehensive understanding of infection in dromedaries is critical to informing public health recommendations and implementing intervention strategies to mitigate spillover events. Experimental models of reservoir disease are absolutely critical in understanding the pathogenesis and transmission, and are key to testing potential dromedary vaccines against MERS-CoV. In this review, we describe experimental infections of dromedary camels as well as additional camelid models used to further understand the camel’s role in MERS-CoV spillover to humans.
- Published
- 2020
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49. Nuclear VANGL2 Inhibits Lactogenic Differentiation
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Rubio, Stefany, Molinuevo, Rut, Sanz-Gomez, Natalia, Zomorrodinia, Talieh, Cockrum, Chad S, Luong, Elina, Rivas, Lucia, Cadle, Kora, Menendez, Julien, and Hinck, Lindsay
- Subjects
Biochemistry and Cell Biology ,Biological Sciences ,Women's Health ,Genetics ,Breast Cancer ,Cancer ,1.1 Normal biological development and functioning ,Generic health relevance ,Cell Polarity ,Cell Membrane ,Membrane Proteins ,Signal Transduction ,DNA ,VANGL2 ,mammary gland ,nuclear localization ,Biological sciences ,Biomedical and clinical sciences - Abstract
Planar cell polarity (PCP) proteins coordinate tissue morphogenesis by governing cell patterning and polarity. Asymmetrically localized on the plasma membrane of cells, transmembrane PCP proteins are trafficked by endocytosis, suggesting they may have intracellular functions that are dependent or independent of their extracellular role, but whether these functions extend to transcriptional control remains unknown. Here, we show the nuclear localization of transmembrane, PCP protein, VANGL2, in the HCC1569 breast cancer cell line, and in undifferentiated, but not differentiated, HC11 cells that serve as a model for mammary lactogenic differentiation. The loss of Vangl2 function results in upregulation of pathways related to STAT5 signaling. We identify DNA binding sites and a nuclear localization signal in VANGL2, and use CUT&RUN to demonstrate recruitment of VANGL2 to specific DNA binding motifs, including one in the Stat5a promoter. Knockdown (KD) of Vangl2 in HC11 cells and primary mammary organoids results in upregulation of Stat5a, Ccnd1 and Csn2, larger acini and organoids, and precocious differentiation; phenotypes are rescued by overexpression of Vangl2, but not Vangl2ΔNLS. Together, these results advance a paradigm whereby PCP proteins coordinate tissue morphogenesis by keeping transcriptional programs governing differentiation in check.
- Published
- 2024
50. Transition of Care from the Emergency Department to the Outpatient Setting: A Mixed-Methods Analysis
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Ashley C. Rider, Chad S. Kessler, Whitney W. Schwarz, Gillian R. Schmitz, Laura Oh, Michael D. Smith, Eric A. Gross, Hans House, Michael C. Wadman, and Bruce M. Lo
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Medicine ,Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
Introduction: The goal of this study was to characterize current practices in the transition of care between the emergency department and primary care setting, with an emphasis on the use of the electronic medical record (EMR). Methods: Using literature review and modified Delphi technique, we created and tested a pilot survey to evaluate for face and content validity. The final survey was then administered face-to-face at eight different clinical sites across the country. A total of 52 emergency physicians (EP) and 49 primary care physicians (PCP) were surveyed and analyzed. We performed quantitative analysis using chi-square test. Two independent coders performed a qualitative analysis, classifying answers by pre-defined themes (inter-rater reliability > 80%). Participants’ answers could cross several pre-defined themes within a given question. Results: EPs were more likely to prefer telephone communication compared with PCPs (30/52 [57.7%] vs. 3/49 [6.1%] P < 0.0001), whereas PCPs were more likely to prefer using the EMR for discharge communication compared with EPs (33/49 [67.4%] vs. 13/52 [25%] p < 0.0001). EPs were more likely to report not needing to communicate with a PCP when a patient had a benign condition (23/52 [44.2%] vs. 2/49 [4.1%] p < 0.0001), but were more likely to communicate if the patient required urgent follow-up prior to discharge from the ED (33/52 [63.5%] vs. 20/49 [40.8%] p = 0.029). When discussing barriers to effective communication, 51/98 (52%) stated communication logistics, followed by 49/98 (50%) who reported setting/environmental constraints and 32/98 (32%) who stated EMR access was a significant barrier. Conclusion: Significant differences exist between EPs and PCPs in the transition of care process. EPs preferred telephone contact synchronous to the encounter whereas PCPs preferred using the EMR asynchronous to the encounter. Providers believe EP-to-PCP contact is important for improving patient care, but report varied expectations and multiple barriers to effective communication. This study highlights the need to optimize technology for an effective transition of care from the ED to the outpatient setting.
- Published
- 2018
- Full Text
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