1. Dynamics of extended-spectrum cephalosporin-resistant Escherichia coli in pig farms: A longitudinal study.
- Author
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Moor J, Aebi S, Rickli S, Mostacci N, Overesch G, Oppliger A, and Hilty M
- Subjects
- Adult, Aged, Aged, 80 and over, Animals, Escherichia coli Infections epidemiology, Farmers statistics & numerical data, Farms statistics & numerical data, Female, Genome-Wide Association Study, Humans, Longitudinal Studies, Male, Middle Aged, Occupational Exposure statistics & numerical data, Prevalence, Swine, Switzerland epidemiology, Anti-Bacterial Agents therapeutic use, Cephalosporin Resistance drug effects, Cephalosporins therapeutic use, Escherichia coli drug effects, Escherichia coli genetics, Escherichia coli Infections drug therapy, Escherichia coli Infections veterinary, Feces microbiology
- Abstract
Objectives: Point prevalence estimates of extended-spectrum cephalosporin-resistant Escherichia coli (ESC-R-Ec) are important surveillance measures but may not uncover the ESC-R-Ec dynamics within pig farms. A longitudinal study was therefore performed by sampling individual pigs, pig farmers and the environment., Methods: On average, 30 (range 10-46) piglets of 31 Swiss farms were sampled during the suckling, weaning and fattening stages (n= 2437 samples). In addition, stool from pig farmers and environmental samples were obtained and metadata collected by questionnaires. ESC-R-Ec was identified by routine culture, and clonal relationships and resistance genes were derived from whole genome sequencing data., Results: Working on pig farms was not associated with an increased prevalence of ESC-R-Ec in humans. ESC-R-Ec prevalence significantly decreased from 6.2% to 3.9% and 1.8% for the suckling, weaned and fattening pigs, respectively (P < 0.001). Within the 57 ESC-R-positive suckling piglets, persisting carriage was detected in 25 animals at two consecutive time points and one animal at three consecutive time points. Clonal spread (n=7 farms, 22.6%) and horizontal gene transfer (n=1 farm, 3%) within pigs but not between humans and animals was detected. Liquid manure (n=10 samples, 16.7%) was identified as the major environmental reservoir of ESC-R-Ec in the pig farm environment., Conclusions: Pig farming practices like all-in-all-out systems, but not antimicrobial usage, were associated with reduced risk of ESC-R-Ec at the farm level. As carriage duration is normally short within the individual pigs, the risk of recolonisation and clonal spread of ESC-R-Ec might be reduced by applying appropriate decontamination strategies., (Copyright © 2021 The Author(s). Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2021
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