33 results on '"Caroline H. Ko"'
Search Results
2. A first-in-human phase 0 clinical study of RNA interference-based spherical nucleic acids in patients with recurrent glioblastoma
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Howard Colman, Si Chen, C. David James, Laura Zuckerman, Olga Antipova, Margaret Schwartz, Daniel J. Brat, Junjing Deng, Dusten Unruh, Mitchell Glass, Caroline H. Ko, Rimas V. Lukas, Orin Bloch, Gayle E. Woloschak, Priya Kumthekar, Barry Lai, Ramana V. Davuluri, Fotini M. Kouri, Craig Horbinski, Borko Jovanovic, Tatjana Paunesku, Vinod Vijayakumar, Ray Lezon, Lisa A. Hurley, Miguel Muzzio, Nitya V. Sharma, Adam M. Sonabend, Francis J. Giles, Jeremy Heidel, Ann K. Adams, Matthew C. Tate, Serena Tommasini-Ghelfi, Luxi Li, Kathleen McCortney, Alexander H. Stegh, Manoj Kandpal, and Karan Dixit
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Small interfering RNA ,Muscle Proteins ,Metal Nanoparticles ,Bioengineering ,Medical and Health Sciences ,Article ,Rare Diseases ,Pharmacokinetics ,RNA interference ,Glioma ,Nucleic Acids ,medicine ,Genetics ,Humans ,Nanotechnology ,Cancer ,Oncogene ,Oligonucleotide ,business.industry ,Brain Neoplasms ,Neurosciences ,Evaluation of treatments and therapeutic interventions ,General Medicine ,Gene Therapy ,Biological Sciences ,medicine.disease ,Primary tumor ,Brain Disorders ,Brain Cancer ,Neoplasm Recurrence ,Good Health and Well Being ,Local ,Proto-Oncogene Proteins c-bcl-2 ,6.1 Pharmaceuticals ,Cancer research ,Nucleic acid ,RNA Interference ,Gold ,Neoplasm Recurrence, Local ,business ,Glioblastoma ,Biotechnology - Abstract
The lack of precision therapies combined with limited therapeutic access to intracranial tumor sites due to the presence of the blood-brain/blood-tumor barriers have contributed to glioblastoma (GBM) being one of the most difficult cancers to effectively treat. We have developed a novel precision medicine approach for GBM treatment that involves the use of brain-penetrant RNA interference (RNAi)-based spherical nucleic acids (SNAs). In this study, we used SNAs consisting of gold nanoparticle cores covalently conjugated with radially oriented and densely packed siRNA oligonucleotides. Based upon previous preclinical evaluation, we conducted toxicology and toxicokinetic studies in non-human primates, and a single-arm, open-label phase 0 first-in-human trial (NCT03020017) to determine safety, pharmacokinetics, intratumoral accumulation and gene-suppressive activity of systemically administered SNAs carrying siRNA specific for the GBM oncogene Bcl2Like12 (Bcl2L12). Patients with recurrent GBM were treated with intravenous administration of siBcl2L12-SNAs (drug moniker: NU-0129), at a dose corresponding to 1/50th of the no-observed-adverse-event-level (NOAEL), followed by tumor resection. Safety assessment revealed no significant treatment-related toxicities. Inductively coupled plasma mass spectrometry, X-ray fluorescence microscopy, and silver staining of resected GBM tissue demonstrated that intravenously administered SNAs reached patient tumors, with gold (Au) enrichment observed in the tumor-associated endothelium, macrophages and tumor cells. NU-0129 uptake into glioma cells correlated with significant reduction in tumor-associated Bcl2L12 protein expression, as indicated by comparison of NU-0129-treated recurrent vs. matched primary (i.e., untreated) tumor. Our results establish SNA nanoconjugates as a brain-penetrant precision medicine approach for the systemic treatment of GBM.
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- 2021
3. Spherical Nucleic Acid Nanoparticle Conjugates as an RNAi-Based Therapy for Glioblastoma*
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Samuel A. Jensen, Emily S. Day, Caroline H. Ko, Lisa A. Hurley, Janina P. Luciano, Fotini M. Kouri, Timothy J. Merkel, Andrea J. Luthi, Pinal C. Patel, Joshua I. Cutler, Weston L. Daniel, Alexander W. Scott, Matthew W. Rotz, Thomas J. Meade, David A. Giljohann, Chad A. Mirkin, and Alexander H. Stegh
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- 2020
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4. Correction: Inducible and Reversible Gene Expression in Brain Using the tTA System for the Study of Circadian Behavior.
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Hee-Kyung Hong, Jason L Chong, Weimin Song, Eun Joo Song, Amira A Jyawook, Andrew C Schook, Caroline H Ko, and Joseph S Takahashi
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Genetics ,QH426-470 - Published
- 2011
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5. Inducible and reversible Clock gene expression in brain using the tTA system for the study of circadian behavior.
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Hee-Kyung Hong, Jason L Chong, Weimin Song, Eun Joo Song, Amira A Jyawook, Andrew C Schook, Caroline H Ko, and Joseph S Takahashi
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Genetics ,QH426-470 - Abstract
The mechanism of circadian oscillations in mammals is cell autonomous and is generated by a set of genes that form a transcriptional autoregulatory feedback loop. While these "clock genes" are well conserved among animals, their specific functions remain to be fully understood and their roles in central versus peripheral circadian oscillators remain to be defined. We utilized the in vivo inducible tetracycline-controlled transactivator (tTA) system to regulate Clock gene expression conditionally in a tissue-specific and temporally controlled manner. Through the use of Secretogranin II to drive tTA expression, suprachiasmatic nucleus- and brain-directed expression of a tetO::Clock(Delta19) dominant-negative transgene lengthened the period of circadian locomotor rhythms in mice, whereas overexpression of a tetO::Clock(wt) wild-type transgene shortened the period. Low doses (10 mug/ml) of doxycycline (Dox) in the drinking water efficiently inactivated the tTA protein to silence the tetO transgenes and caused the circadian periodicity to return to a wild-type state. Importantly, low, but not high, doses of Dox were completely reversible and led to a rapid reactivation of the tetO transgenes. The rapid time course of tTA-regulated transgene expression demonstrates that the CLOCK protein is an excellent indicator for the kinetics of Dox-dependent induction/repression in the brain. Interestingly, the daily readout of circadian period in this system provides a real-time readout of the tTA transactivation state in vivo. In summary, the tTA system can manipulate circadian clock gene expression in a tissue-specific, conditional, and reversible manner in the central nervous system. The specific methods developed here should have general applicability for the study of brain and behavior in the mouse.
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- 2007
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6. Impact of Sequence Specificity of Spherical Nucleic Acids on Macrophage Activation in Vitro and in Vivo
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Chad A. Mirkin, Chenxia M. Guan, Jennifer R. Ferrer, Alyssa B. Chinen, and Caroline H. Ko
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medicine.medical_treatment ,Nitrogen Dioxide ,Pharmaceutical Science ,Metal Nanoparticles ,02 engineering and technology ,In Vitro Techniques ,030226 pharmacology & pharmacy ,Article ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Downregulation and upregulation ,In vivo ,Nucleic Acids ,Drug Discovery ,medicine ,Macrophage ,Animals ,Humans ,Receptor ,Cells, Cultured ,Chemistry ,Macrophages ,Macrophage Activation ,021001 nanoscience & nanotechnology ,In vitro ,Cell biology ,G-Quadruplexes ,Mice, Inbred C57BL ,Cytokine ,Spherical nucleic acid ,Nucleic acid ,Molecular Medicine ,Cytokines ,Gold ,0210 nano-technology - Abstract
The effects of spherical nucleic acid (SNA) gold nanoparticle conjugates on the activation of macrophages in vitro and release of cytokines in vivo were explored. Herein, we show that G-quadruplexes, the formation of which is enhanced on gold nanoparticle surfaces, elicit an increase in cytokine release from mouse and human macrophages and induce the upregulation of activation receptors as well as NO(2) production in vitro. Moreover, these G-rich SNAs can induce cytokine release when injected intravenously, though there were no severe, long-term effects observed. These results further reinforce the notion that nucleic acid sequence and structure play an important role in how SNAs interact in biological milieu and highlight a key design parameter.
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- 2019
7. EXT418, a novel long‐acting ghrelin, mitigates Lewis lung carcinoma induced cachexia in mice
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Haiming L. Kerr, Kora Krumm, Ian (In‐gi) Lee, Barbara Anderson, Anthony Christiani, Lena Strait, Beatrice A. Breckheimer, Brynn Irwin, Alice (Siyi) Jiang, Artur Rybachok, Amanda Chen, Lucas Caeiro, Elizabeth Dacek, Daniel B. Hall, Caroline H. Kostyla, Laura M. Hales, Tarik M. Soliman, and Jose M. Garcia
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Cachexia ,Ghrelin ,Wasting ,Inflammation ,Mitophagy ,Diseases of the musculoskeletal system ,RC925-935 ,Human anatomy ,QM1-695 - Abstract
Abstract Background Ghrelin is a potential therapy for cachexia due to its orexigenic properties and anabolic effects on muscle and fat. However, its clinical use is limited by the short half‐life of active (acylated) ghrelin (~11 min in humans). EXT418 is a novel long‐acting, constitutively active ghrelin analog created by covalently linking it to a vitamin D derivative. Here, we evaluated the effects and mechanisms of action of EXT418 on Lewis lung carcinoma (LLC)‐induced cachexia in mice. Methods Male C57BL/6J mice (5‐ to 7‐month‐old) were implanted with 1 × 106 heat‐killed (HK) or live LLC cells. When the tumour was palpable, mice were injected with vehicle (T + V) or EXT418 daily (T + 418 Daily, 0.25 mg/kg/day) or every other day (T + 418 EOD, 0.5 mg/kg/EOD) for up to 14 days, whereas HK‐treated mice were given vehicle (HK + V). Subsets of T + 418 Daily or EOD‐treated mice were pair‐fed to the T + V group. Body composition and grip strength were evaluated before tumour implantation and at the end of the experiment. Molecular markers were probed in muscles upon termination. Results In tumour‐bearing mice, administration of EXT418 daily or EOD partially prevented weight loss (T + V vs. T + 418 Daily, P = 0.030; and vs. T + 418 EOD, P = 0.020). Similar effects were observed in whole body fat and lean body mass. Grip strength in tumour‐bearing mice was improved by EXT418 daily (P = 0.010) or EOD (P = 0.008) administration compared with vehicle‐treated mice. These effects of EXT418 on weight and grip strength were partially independent of food intake. EXT418 daily administration also improved type IIA (P = 0.015), IIB (P = 0.037) and IIX (P = 0.050) fibre cross‐sectional area (CSA) in tibialis anterior (TA) and EXT418 EOD improved CSA of IIB fibres in red gastrocnemius (GAS; P = 0.005). In skeletal muscles, tumour‐induced increases in atrogenes Fbxo32 and Trim63 were ameliorated by EXT418 treatments (TA and GAS/plantaris, PL), which were independent of food intake. EXT418 administration decreased expression of the mitophagy marker Bnip3 (GAS/PL; P ≤ 0.010). Similar effects of EXT418 EOD were observed in p62 (GAS/PL; P = 0.039). In addition, EXT418 treatments ameliorated the tumour‐induced elevation in muscle Il6 transcript levels (TA and GAS/PL), independently of food intake. Il‐6 transcript levels in adipose tissue and circulating IL‐10 were elevated in response to the tumour but these increases were not significant with EXT418 administration. Tumour mass was not altered by EXT418. Conclusions EXT418 mitigates LLC‐induced cachexia by attenuating skeletal muscle inflammation, proteolysis, and mitophagy, without affecting tumour mass and partially independent of food intake.
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- 2023
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8. A phase 0 first-in-human study using NU-0129: A gold base spherical nucleic acid (SNA) nanoconjugate targeting BCL2L12 in recurrent glioblastoma patients
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Roger Stupp, Priya Kumthekar, Kathleen McCortney, Caroline H. Ko, Margaret Schwartz, Alfred Rademaker, Karan Dixit, Craig Horbinski, Alexander H. Stegh, Rimas V. Lukas, Laura Sharp, and Adam M. Sonabend
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Cancer Research ,business.industry ,Recurrent glioblastoma ,First in human ,Blood–brain barrier ,medicine.disease ,03 medical and health sciences ,0302 clinical medicine ,medicine.anatomical_structure ,Oncology ,030220 oncology & carcinogenesis ,Spherical nucleic acid ,Cancer research ,Medicine ,business ,030215 immunology ,Glioblastoma - Abstract
3012 Background: Glioblastoma is a difficult to treat tumor with therapeutics limited by their ability to cross the blood brain barrier. SNAs, i.e., gold nanoparticle cores covalently conjugated with a corona of densely packed, highly oriented siRNA oligonucleotides targeted to the GBM oncogene BCL2L12, represent a novel class of blood-brain and blood-tumor barrier-permeable nanomedicinal conjugates, for suppressing gene expression in the tumors of GBM patients. Methods: This is a single-arm, open-label, “window of opportunity” phase 0 first-in-human trial to determine the safety and bioavailability of a novel nanotherapeutic compound, NU-0129. Enrolled patients were treated with intravenous NU-0129 at the dose of 0.04mg/kg. This treatment dosing was considered microdosing defined as 1/50ththe NOAEL (no observed adverse event level) from non-human primate studies. Treatment was followed by tumor resection 8-48 hours later. Primary outcome patient safety and toxicity was monitored weekly for 3 weeks post-infusion. Secondary objectives included biodistribution of NU0129 in tissue, evaluation of pharmacokinetics of NU0129 and the feasibility of NU0129 administration. Exploratory objectives included Bcl2L12 expression and post treatment apoptotic markers as well as progression free survival and overall survival rates. Results: 8 patients were enrolled, treated and subsequently underwent surgical resection. No significant treatment related toxicities were seen. Severe ( > grade 3) adverse events were observed in two patients: hypophosphatemia (one grade 3, one grade 4) and one patient with grade 3 lymphopenia, all were considered as “possibly related” by treating oncologists. In 6 of the 8 patients sufficient tumor tissue was available for analysis of gold accumulation by ICP-MS (inductively coupled plasma-mass spectrometry), and gold accumulation was seen in the tumor tissue of all 6 of these patients. Conclusions: Macrodosing of the nanotherapeutic NU-0129 was well tolerated in glioblastoma patients with no unexpected adverse effects and showed initial evidence of crossing blood brain barrier. Immunohistochemistry for Bcl2L12 expression, apoptotic markers, and PK studies are pending. The demonstration of gold nanoparticles in the tumor tissue validates this approach for drug delivery. Clinical trial information: NCT03020017.
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- 2019
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9. Memory for Time of Day (Time Memory) Is Encoded by a Circadian Oscillator and Is Distinct From Other Context Memories
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Kevin Sam, Caroline H. Ko, Omar A. Rawashdeh, Martin R. Ralph, and Sean W. Cain
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Male ,Communication ,Physiology ,Suprachiasmatic nucleus ,business.industry ,Photoperiod ,Period (gene) ,Circadian clock ,Context (language use) ,Time perception ,Memory ,Light Cycle ,Circadian Clocks ,Cricetinae ,Physiology (medical) ,Time Perception ,Zeitgeber ,Animals ,Circadian rhythm ,Psychology ,business ,Neuroscience - Abstract
We report that the neural representation of the time of day (time memory) in golden hamsters involves the setting of a 24-h oscillator that is functionally and anatomically distinct from the circadian clock in the suprachiasmatic nucleus (SCN), but is entrained by the SCN acting as a weak zeitgeber. In hamsters, peak conditioned place avoidance (CPA) was expressed only near the time of day of the learning experience (± 2 h) for the first days after conditioning. On a 14:10 light:dark cycle, with conditioning at the end of the light period (zeitgeber time 11 [ZT11]), CPA behavior, including time of day memory, was retained for more than 18 d. With conditioning in the early day (zeitgeber time 03 [ZT03]), CPA was completely lost after 5 d but reemerged after an additional 6 d, with the peak avoidance time shifted to ZT11. When the entraining light cycle was shifted immediately following learning at either ZT11 or ZT03, with no additional experience in the training apparatus, peak CPA 18 d later was always found at ZT11 on the shifted light cycles. When conditioned at ZT03, then placed into constant dark for 18 cycles, the peak shifted to subjective circadian time 11 (CT11). In all experiments, the peak CPA time was set initially to the time of experience, and was reset subsequently to the end of the subjective day, without memory loss for other context associations. In the absence of an SCN, peak avoidance was not reset. Therefore, time memory is distinct from other context memories, and involves the setting of a non-SCN circadian oscillator. We suggest that circadian oscillators underlying time memory work in concert with the SCN to enable anticipation of critical conditions according to both immediate- and long-term probabilities of where and when important conditions could be encountered again.
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- 2013
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10. Nanotechnology for synthetic high-density lipoproteins
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C. Shad Thaxton, Pinal C. Patel, R. Kannan Mutharasan, Caroline H. Ko, Chad A. Mirkin, and Andrea J. Luthi
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Mechanism (biology) ,Cholesterol ,business.industry ,Reverse cholesterol transport ,Metal Nanoparticles ,nutritional and metabolic diseases ,High density ,Coronary Disease ,Nanotechnology ,Disease ,Article ,Coronary heart disease ,chemistry.chemical_compound ,chemistry ,Animals ,Humans ,Molecular Medicine ,Medicine ,lipids (amino acids, peptides, and proteins) ,Lipoproteins, HDL ,business ,Inverse correlation ,Molecular Biology ,Cause of death - Abstract
Atherosclerosis is the disease mechanism responsible for coronary heart disease (CHD), the leading cause of death worldwide. One strategy to combat atherosclerosis is to increase the amount of circulating high density lipoproteins (HDL), which transport cholesterol from peripheral tissues to the liver for excretion. The process, known as reverse cholesterol transport, is thought to be one of the main reasons for the significant inverse correlation observed between HDL blood levels and the development of CHD. This article highlights the most common strategies for treating atherosclerosis using HDL. We further detail potential treatment opportunities that utilize nanotechnology to increase the amount of HDL in circulation. The synthesis of biomimetic HDL nanostructures that replicate the chemical and physical properties of natural HDL provides novel materials for investigating the structure-function relationships of HDL and for potential new therapeutics to combat CHD.
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- 2010
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11. Casein kinase I epsilon gene transfer into the suprachiasmatic nucleus via electroporation lengthens circadian periods of tau mutant hamsters
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Caroline H. Ko, Haoran Wang, Martin R. Ralph, Margaret M. Koletar, and John S. Yeomans
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CLOCK ,Suprachiasmatic nucleus ,General Neuroscience ,Electroporation ,Period (gene) ,Mutant ,Gene expression ,Circadian rhythm ,Casein Kinase Iepsilon ,Biology ,Molecular biology - Abstract
Circadian activity rhythms in mammals are controlled by the expression and transcriptional regulation of clock genes in the suprachiasmatic nucleus (SCN). The circadian cycle length in hamsters is regulated in part by casein kinase I epsilon (CKIepsilon). A semidominant mutation (C-->T, R178C, CKIepsilon(tau)) appears to act as a dominant-negative allele to shorten the period of circadian rhythms. We tested this hypothesis in vivo by expressing wild-type CKIepsilon gene in homozygous tau mutant hamsters. High-level CKIepsilon(+/+) gene transfer and expression (as indicated by green fluorescent protein) were obtained by injecting CKIepsilon-containing plasmids bilaterally near the SCN, followed by in vivo electroporation. Rhythmicity reappeared 5-7 days after electroporation, with a gradual increase in circadian period over the next 10 days. The circadian period returned to the baseline over the next 20 days. For the five hamsters with clearest gene expression in the SCN, the mean lengthening time was 39.6 min. Period change was not observed in either control tau mutant hamsters electroporated with plasmids lacking the CKIepsilon gene or in wild-type hamsters with plasmids containing the wild-type CKIepsilon gene. Therefore, normal periodicity in homozygous CKIepsilon(tau) hamsters was partially rescued by expression of the wild-type CKIepsilon gene in the SCN, supporting a competitive and dominant-negative action of the mutant allele. This study shows that electroporation of wild-type CKIepsilon gene into the SCN is sufficient for lengthening the shorter circadian period of tau mutant hamsters in a time-dependent way and supports the conclusion that CKIepsilon(tau) is the cause of the shorter period.
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- 2007
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12. The mouse Clock mutation reduces circadian pacemaker amplitude and enhances efficacy of resetting stimuli and phase–response curve amplitude
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Caroline H. Ko, Andrew C. Schook, Ethan M. Fruechte, Anne Marie Chang, Fred W. Turek, Joseph S. Takahashi, Martha Hotz Vitaterna, Marina P. Antoch, and Ethan D. Buhr
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Light ,Photoperiod ,Recombinant Fusion Proteins ,Period (gene) ,Circadian clock ,CLOCK Proteins ,Cell Cycle Proteins ,Mice, Inbred Strains ,Motor Activity ,Biology ,Mice ,Biological Clocks ,Animals ,Oscillating gene ,Multidisciplinary ,Suprachiasmatic nucleus ,Nuclear Proteins ,Period Circadian Proteins ,Biological Sciences ,Molecular biology ,Circadian Rhythm ,CLOCK ,PER2 ,Gene Expression Regulation ,Mutation ,Trans-Activators ,Suprachiasmatic Nucleus ,Transcription Factors ,PER1 - Abstract
The mouse Clock gene encodes a basic helix–loop–helix-PAS transcription factor, CLOCK, that acts in concert with BMAL1 to form the positive elements of the circadian clock mechanism in mammals. The original Clock mutant allele is a dominant negative (antimorphic) mutation that deletes exon 19 and causes an internal deletion of 51 aa in the C-terminal activation domain of the CLOCK protein. Here we report that heterozygous Clock / + mice exhibit high-amplitude phase-resetting responses to 6-h light pulses (Type 0 resetting) as compared with wild-type mice that have low amplitude (Type 1) phase resetting. The magnitude and time course of acute light induction in the suprachiasmatic nuclei of the only known light-induced core clock genes, Per1 and Per2 , are not affected by the Clock /+ mutation. However, the amplitude of the circadian rhythms of Per gene expression are significantly reduced in Clock homozygous and heterozygous mutants. Rhythms of PER2::LUCIFERASE expression in suprachiasmatic nuclei explant cultures also are reduced in amplitude in Clock heterozygotes. The phase–response curves to changes in culture medium are Type 0 in Clock heterozygotes, but Type 1 in wild types, similar to that seen for light in vivo . The increased efficacy of resetting stimuli and decreased PER expression amplitude can be explained in a unified manner by a model in which the Clock mutation reduces circadian pacemaker amplitude in the suprachiasmatic nuclei.
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- 2006
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13. A noncanonical E-box enhancer drives mouse Period2 circadian oscillations in vivo
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Suhwan Chang, Phillip L. Lowrey, Caroline H. Ko, Seung Hee Yoo, Eun Joo Song, Choogon Lee, Joseph S. Takahashi, Ook Joon Yoo, Shin Yamazaki, and Ethan D. Buhr
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Transcription, Genetic ,Circadian clock ,CLOCK Proteins ,Gene Expression ,Cell Cycle Proteins ,Mice, Transgenic ,Enhancer RNAs ,E-box ,Biology ,Cell Line ,E-Box Elements ,Mice ,Basic Helix-Loop-Helix Transcription Factors ,Animals ,Humans ,Luciferases ,Promoter Regions, Genetic ,Enhancer ,Transcription factor ,Mice, Knockout ,Multidisciplinary ,Homozygote ,ARNTL Transcription Factors ,Nuclear Proteins ,Period Circadian Proteins ,Biological Sciences ,Molecular biology ,Mice, Mutant Strains ,Circadian Rhythm ,Mice, Inbred C57BL ,CLOCK ,Enhancer Elements, Genetic ,Protein Biosynthesis ,Trans-Activators ,Female ,Transcription Factors - Abstract
The mouse Period2 ( mPer2 ) locus is an essential negative-feedback element of the mammalian circadian-clock mechanism. Recent work has shown that mPer2 circadian gene expression persists in both central and peripheral tissues. Here, we analyze the mouse mPer2 promoter and identify a circadian enhancer (E2) with a noncanonical 5′-CACGTT-3′ E-box located 20 bp upstream of the mPer2 transcription start site. The E2 enhancer accounts for most circadian transcriptional drive of the mPer2 locus by CLOCK:BMAL1, is a major site of DNaseI hypersensitivity in this region, and is constitutively bound by a transcriptional complex containing the CLOCK protein. Importantly, the E2 enhancer is sufficient to drive self-sustained circadian rhythms of luciferase activity in central and peripheral tissues from mPer2-E2 :: Luciferase transgenic mice with tissue-specific phase and period characteristics. Last, genetic analysis with mutations in Clock and Bmal1 shows that the E2 enhancer is a target of CLOCK and BMAL1 in vivo .
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- 2005
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14. PERIOD2::LUCIFERASE real-time reporting of circadian dynamics reveals persistent circadian oscillations in mouse peripheral tissues
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Won Jun Oh, Hee Kyung Hong, Ethan D. Buhr, Sandra M. Siepka, Shin Yamazaki, Kazuhiro Shimomura, Ook Joon Yoo, Seung Hee Yoo, Joseph S. Takahashi, Caroline H. Ko, Phillip L. Lowrey, and Michael Menaker
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Male ,medicine.medical_specialty ,Recombinant Fusion Proteins ,Mice, Transgenic ,Motor Activity ,Biology ,Kidney ,RAR-related orphan receptor alpha ,Cornea ,Mice ,Culture Techniques ,Internal medicine ,medicine ,Animals ,Circadian rhythm ,Luciferases ,Lung ,Multidisciplinary ,Nuclear Proteins ,Bacterial circadian rhythms ,Circadian Rhythm ,Cell biology ,Mice, Inbred C57BL ,PER2 ,CLOCK ,Phenotype ,Endocrinology ,Liver ,Light effects on circadian rhythm ,Pituitary Gland ,Luminescent Measurements ,Commentary ,Period Circadian Proteins ,Female ,Suprachiasmatic Nucleus ,PER1 - Abstract
Mammalian circadian rhythms are regulated by the suprachiasmatic nucleus (SCN), and current dogma holds that the SCN is required for the expression of circadian rhythms in peripheral tissues. Using a PERIOD2::LUCIFERASE fusion protein as a real-time reporter of circadian dynamics in mice, we report that, contrary to previous work, peripheral tissues are capable of self-sustained circadian oscillations for >20 cycles in isolation. In addition, peripheral organs expressed tissue-specific differences in circadian period and phase. Surprisingly, lesions of the SCN in mPer2 Luciferase knockin mice did not abolish circadian rhythms in peripheral tissues, but instead caused phase desynchrony among the tissues of individual animals and from animal to animal. These results demonstrate that peripheral tissues express self-sustained, rather than damped, circadian oscillations and suggest the existence of organ-specific synchronizers of circadian rhythms at the cell and tissue level.
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- 2004
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15. The Suprachiasmatic Nucleus is not Required for Temporal Gating of Performance on a Reward-based Learning and Memory Task
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Robert J. McDonald, Martin R. Ralph, and Caroline H. Ko
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Physiology ,Suprachiasmatic nucleus ,Computer science ,Context (language use) ,Gating ,Conditioned place preference ,Task (project management) ,nervous system ,Memory task ,Physiology (medical) ,Effects of sleep deprivation on cognitive performance ,Neuroscience ,Time discrimination ,Ecology, Evolution, Behavior and Systematics - Abstract
In hamsters, the expression of a learned preference for context depends upon a temporal match between the time of training and testing. In the present experiments, we investigated the role of the biological clock in the suprachiasmatic nucleus (SCN) as a provider of temporal information underlying this time dependent modulation of cognitive performance. Hamsters were tested using the conditioned place preference task (CPP) before and after ablation of the SCN. Arrhythmic animals continued to show time-of-day modulation of the CPP when trained and tested in the absence of the SCN. This supports the notion that time of day information is a component of context representation for the hamster (Antoniadis et al., 1999), and indicates that an oscillator outside of the SCN is responsible for time discrimination in reward-based learning.
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- 2003
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16. The Impact of Protein Corona Formation on the Macrophage Cellular Uptake and Biodistribution of Spherical Nucleic Acids
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Alyssa B. Chinen, Chad A. Mirkin, Chenxia M. Guan, and Caroline H. Ko
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Biodistribution ,Materials science ,media_common.quotation_subject ,Receptors, Cell Surface ,Protein Corona ,02 engineering and technology ,Complement receptor ,010402 general chemistry ,01 natural sciences ,Article ,Cell Line ,Biomaterials ,Nucleic Acids ,Animals ,Humans ,Tissue Distribution ,General Materials Science ,Internalization ,media_common ,Base Sequence ,Oligonucleotide ,Macrophages ,Nucleic acid sequence ,Blood Proteins ,General Chemistry ,021001 nanoscience & nanotechnology ,Endocytosis ,0104 chemical sciences ,Complement system ,G-Quadruplexes ,Mice, Inbred C57BL ,Liver ,Biochemistry ,Nucleic acid ,Biophysics ,0210 nano-technology ,Spleen ,Biotechnology - Abstract
The effect of serum protein adsorption on the biological fate of Spherical Nucleic Acids (SNAs) is investigated. Through a proteomic analysis, it is shown that G-quadruplexes templated on the surface of a gold nanoparticle in the form of SNAs mediate the formation of a protein corona that is rich in complement proteins relative to SNAs composed of poly-thymine (poly-T) DNA. Cellular uptake studies show that complement receptors on macrophage cells recognize the SNA protein corona, facilitating their internalization, and causing G-rich SNAs to accumulate in the liver and spleen more than poly-T SNAs in vivo. These results support the conclusion that nucleic acid sequence and architecture can mediate nanoparticle-biomolecule interactions and alter their cellular uptake and biodistribution properties and illustrate that nucleic acid sequence is an important parameter in the design of SNA therapeutics.
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- 2017
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17. Circadian Phase-Shifted Rats Show Normal Acquisition but Impaired Long-Term Retention of Place Information in the Water Task
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Shoshana S. Lebovic, Martin R. Ralph, T. Herbert L. Petri, Bryan D. Devan, Lucie Leblanc, Robert J. McDonald, Nancy S. Hong, Caroline H. Ko, Queenie Lo, Emily H. Goad, and T. Elena A. Antoniadis
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Male ,Time Factors ,Circadian phase ,Cognitive Neuroscience ,Spatial ability ,Spatial Behavior ,Experimental and Cognitive Psychology ,Water maze ,Mnemonic ,Hippocampal formation ,Hippocampus ,Random Allocation ,Behavioral Neuroscience ,Animals ,Learning ,Rats, Long-Evans ,Circadian rhythm ,Memory Disorders ,Behavior, Animal ,Memoria ,Long term retention ,Retention, Psychology ,Water ,Circadian Rhythm ,Rats ,Psychology ,Neuroscience - Abstract
It is thought that circadian rhythms may influence learning and memory processes. However, research supporting this view does not dissociate a mnemonic impairment from other performance deficits. Furthermore, published reports do not specify the type of memory system influenced by the circadian system. The present study assessed the effects of phase shifting on acquisition and expression of place navigation in the water maze, a task sensitive to hippocampal dysfunction. The results showed that phase-shifting circadian rhythms in rats impaired the expression of place information on a retention test but not initial acquisition or encoding of place information. These results suggest that disruption of circadian rhythms may impair consolidation of previously encoded hippocampal place information.
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- 2001
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18. Spherical Nucleic Acid Nanoparticle Conjugates as an RNAi-Based Therapy for Glioblastoma
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Fotini M. Kouri, Thomas J. Meade, Timothy J. Merkel, Alexander W. Scott, Janina P. Luciano, Lisa A. Hurley, Joshua I. Cutler, Caroline H. Ko, Emily S. Day, Samuel A. Jensen, Andrea J. Luthi, Matthew W. Rotz, David A. Giljohann, Pinal C. Patel, Alexander H. Stegh, Weston L. Daniel, and Chad A. Mirkin
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Small interfering RNA ,biology ,Effector ,General Medicine ,Transfection ,medicine.disease ,Molecular biology ,RNA interference ,Glioma ,Spherical nucleic acid ,medicine ,Cancer research ,biology.protein ,Gene silencing ,Caspase - Abstract
Glioblastoma multiforme (GBM) is a neurologically debilitating disease that culminates in death 14 to 16 months after diagnosis. An incomplete understanding of how cataloged genetic aberrations promote therapy resistance, combined with ineffective drug delivery to the central nervous system, has rendered GBM incurable. Functional genomics efforts have implicated several oncogenes in GBM pathogenesis but have rarely led to the implementation of targeted therapies. This is partly because many “undruggable” oncogenes cannot be targeted by small molecules or antibodies. We preclinically evaluate an RNA interference (RNAi)–based nanomedicine platform, based on spherical nucleic acid (SNA) nanoparticle conjugates, to neutralize oncogene expression in GBM. SNAs consist of gold nanoparticles covalently functionalized with densely packed, highly oriented small interfering RNA duplexes. In the absence of auxiliary transfection strategies or chemical modifications, SNAs efficiently entered primary and transformed glial cells in vitro . In vivo, the SNAs penetrated the blood-brain barrier and blood-tumor barrier to disseminate throughout xenogeneic glioma explants. SNAs targeting the oncoprotein Bcl2Like12 (Bcl2L12)—an effector caspase and p53 inhibitor overexpressed in GBM relative to normal brain and low-grade astrocytomas—were effective in knocking down endogenous Bcl2L12 mRNA and protein levels, and sensitized glioma cells toward therapy-induced apoptosis by enhancing effector caspase and p53 activity. Further, systemically delivered SNAs reduced Bcl2L12 expression in intracerebral GBM, increased intratumoral apoptosis, and reduced tumor burden and progression in xenografted mice, without adverse side effects. Thus, silencing antiapoptotic signaling using SNAs represents a new approach for systemic RNAi therapy for GBM and possibly other lethal malignancies.
- Published
- 2013
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19. Molecular and Genetic Bases for the Circadian System
- Author
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Caroline H. Ko and Joseph S. Takahashi
- Subjects
Genetics ,Light effects on circadian rhythm ,Cryptochrome ,Suprachiasmatic nucleus ,Period (gene) ,Circadian clock ,Circadian rhythm ,Biology ,Oscillating gene ,Neuroscience ,Bacterial circadian rhythms - Abstract
Circadian rhythms represent an evolutionarily conserved adaptation to the environment that can be traced back to the earliest life forms. In animals, circadian behavior can be analyzed as an integrated system beginning with genes and leading ultimately to behavioral outputs. In the last decade, the molecular mechanism of circadian clocks has been uncovered by the use of phenotype-driven (forward) genetic analysis in a number of model systems. Circadian oscillations are generated by a set of genes forming a transcriptional autoregulatory feedback loop. Here, the molecular basis of circadian rhythms and the influence of circadian mutations on sleep are reviewed.
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- 2013
- Full Text
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20. Emergence of Noise-Induced Oscillations in the Central Circadian Pacemaker
- Author
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Yujiro Richard Yamada, Joseph S. Takahashi, David K. Welsh, Caroline H. Ko, Eric E. Zhang, Martin R. Ralph, Andrew C. Liu, Daniel B. Forger, Ethan D. Buhr, and Steve A. Kay
- Subjects
General Immunology and Microbiology ,QH301-705.5 ,business.industry ,Noise induced ,General Neuroscience ,Data_MISCELLANEOUS ,Correction ,Pattern recognition ,Biology ,General Biochemistry, Genetics and Molecular Biology ,ComputingMethodologies_PATTERNRECOGNITION ,Data_FILES ,Artificial intelligence ,Biology (General) ,General Agricultural and Biological Sciences ,business ,Circadian pacemaker - Abstract
The files for Datasets S1 and S5 were switched. The file that appears as Dataset S1 should be Dataset S5, and the file that appears as Dataset S5 should be Dataset S1. The legends appear in the correct order. Likewise, the file that appears as Dataset S2 should be Dataset S6, and the file that appears as Dataset S6 should be Dataset S2. These legends also appear in the correct order.
- Published
- 2010
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- View/download PDF
21. Emergence of noise-induced oscillations in the central circadian pacemaker
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Andrew C. Liu, Eric E. Zhang, Martin R. Ralph, Yujiro Richard Yamada, Joseph S. Takahashi, David K. Welsh, Caroline H. Ko, Steve A. Kay, Ethan D. Buhr, Daniel B. Forger, and Mignot, Emmanuel
- Subjects
Circadian clock ,Neuroscience/Neural Homeostasis ,Cell Communication ,Medical and Health Sciences ,Quantitative Biology::Cell Behavior ,Tissue Culture Techniques ,Mice ,0302 clinical medicine ,Cyclic AMP ,Biology (General) ,Computer Science::Databases ,Mice, Knockout ,Neurons ,0303 health sciences ,Chronobiology ,Suprachiasmatic nucleus ,General Neuroscience ,Quantitative Biology::Molecular Networks ,food and beverages ,ARNTL Transcription Factors ,Period Circadian Proteins ,Biological Sciences ,Bacterial circadian rhythms ,Circadian Rhythm ,PER2 ,Suprachiasmatic Nucleus ,General Agricultural and Biological Sciences ,Sleep Research ,Research Article ,medicine.medical_specialty ,endocrine system ,QH301-705.5 ,1.1 Normal biological development and functioning ,Quantitative Biology::Tissues and Organs ,Knockout ,Computational Biology/Transcriptional Regulation ,Biology ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Underpinning research ,Internal medicine ,Circadian Clocks ,medicine ,Animals ,Circadian rhythm ,030304 developmental biology ,Stochastic Processes ,General Immunology and Microbiology ,Quantitative Biology::Neurons and Cognition ,Agricultural and Veterinary Sciences ,Neurosciences ,Endocrinology ,Light effects on circadian rhythm ,nervous system ,Neuroscience ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
Computational modeling and experimentation explain how intercellular coupling and intracellular noise can generate oscillations in a mammalian neuronal network even in the absence of cell-autonomous oscillators., Bmal1 is an essential transcriptional activator within the mammalian circadian clock. We report here that the suprachiasmatic nucleus (SCN) of Bmal1-null mutant mice, unexpectedly, generates stochastic oscillations with periods that overlap the circadian range. Dissociated SCN neurons expressed fluctuating levels of PER2 detected by bioluminescence imaging but could not generate circadian oscillations intrinsically. Inhibition of intercellular communication or cyclic-AMP signaling in SCN slices, which provide a positive feed-forward signal to drive the intracellular negative feedback loop, abolished the stochastic oscillations. Propagation of this feed-forward signal between SCN neurons then promotes quasi-circadian oscillations that arise as an emergent property of the SCN network. Experimental analysis and mathematical modeling argue that both intercellular coupling and molecular noise are required for the stochastic rhythms, providing a novel biological example of noise-induced oscillations. The emergence of stochastic circadian oscillations from the SCN network in the absence of cell-autonomous circadian oscillatory function highlights a previously unrecognized level of circadian organization., Author Summary The suprachiasmatic nucleus (SCN) is the master circadian pacemaker in mammals that controls and coordinates physiological processes in a daily manner. The SCN is composed of a network of cells, with each cell acting as an autonomous oscillator. In isolated individual cells, timekeeping is not precise because of the inherent randomness in the biochemical reactions within each cell, involving its core clock components. However, in the SCN network, precise rhythms can emerge because of intercellular coupling. In this article, we study a loss-of-function mutation of BMAL1, a core clock component, which eliminates timekeeping in isolated cells. Surprisingly, in both experiments and mathematical simulations, we find that noisy rhythms emerge from the SCN network even in the presence of this BMAL1 mutation. This random yet coordinated timekeeping has not been observed in previous modeling and experimental work and indicates that a network of cells can utilize noise to help compensate for loss of a physiological function. In normal function, the SCN network mitigates any variability observed in individual cellular rhythms and produces a precise and rhythmic network timekeeping signal. When the individual cells are no longer rhythmic, the coupling pathways within the SCN network can propagate stochastic rhythms that are a reflection of both feed-forward coupling mechanisms and intracellular noise. Thus, in a manner analogous to central pattern generators in neural circuits, rhythmicity can arise as an emergent property of the network in the absence of component pacemaker or oscillator cells.
- Published
- 2010
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22. Disruption of the clock components CLOCK and BMAL1 leads to hypoinsulinaemia and diabetes
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Caroline H. Ko, James P. Lopez, Xiaozhong Wang, Seth D. Crosby, Ethan D. Buhr, Yumiko Kobayashi, Joseph S. Takahashi, Hong Su, Shelley Mo, Martha Hotz Vitaterna, Louis H. Philipson, Lellean JeBailey, Joseph Bass, Chiaki Omura, Christopher A. Bradfield, Biliana Marcheva, Kathryn Moynihan Ramsey, and Ganka Ivanova
- Subjects
Blood Glucose ,endocrine system ,medicine.medical_specialty ,Aging ,Cell Survival ,Circadian clock ,CLOCK Proteins ,Biology ,In Vitro Techniques ,Article ,03 medical and health sciences ,Diabetes mellitus genetics ,Islets of Langerhans ,Mice ,0302 clinical medicine ,Internal medicine ,Glucose Intolerance ,Insulin Secretion ,medicine ,Diabetes Mellitus ,Glucose homeostasis ,Animals ,Insulin ,Wakefulness ,030304 developmental biology ,Cell Proliferation ,Cell Size ,0303 health sciences ,Multidisciplinary ,Pancreatic islets ,Gene Expression Profiling ,ARNTL Transcription Factors ,Period Circadian Proteins ,Glucose Tolerance Test ,Insulin oscillation ,Circadian Rhythm ,ARNTL ,Endocrinology ,medicine.anatomical_structure ,Phenotype ,Synaptic Vesicles ,Sleep ,030217 neurology & neurosurgery - Abstract
During periods of feeding, pancreatic islets secrete insulin to maintain glucose homeostasis — a rhythmic process that is disturbed in people with diabetes. Experiments in mice now show that the pancreatic islets contain their own biological clock, which orchestrates insulin secretion during the sleep–wake cycle. The transcription factors CLOCK and BMAL1 are vital for this process, and mice with defective copies of the genes Clock and Bmal1 develop hypoinsulinaemia and diabetes. By demonstrating that a local tissue clock integrates circadian and metabolic signals in pancreatic β-cells, this work suggests that circadian analyses are crucial for deeper understanding of metabolic phenotypes, as well as for the treatment of metabolic diseases such as type 2 diabetes. Circadian rhythms control many physiological functions. During periods of feeding, pancreatic islets secrete insulin to maintain glucose homeostasis — a rhythmic process that is disturbed in people with diabetes. These authors show that pancreatic islets contain their own clock: they have self-sustained circadian oscillations of CLOCK and BMAL1 genes and proteins, which are vital for the regulation of circadian rhythms. Without this clock, a cascade of cellular failure and pathology initiates the onset of diabetes mellitus. The molecular clock maintains energy constancy by producing circadian oscillations of rate-limiting enzymes involved in tissue metabolism across the day and night1,2,3. During periods of feeding, pancreatic islets secrete insulin to maintain glucose homeostasis, and although rhythmic control of insulin release is recognized to be dysregulated in humans with diabetes4, it is not known how the circadian clock may affect this process. Here we show that pancreatic islets possess self-sustained circadian gene and protein oscillations of the transcription factors CLOCK and BMAL1. The phase of oscillation of islet genes involved in growth, glucose metabolism and insulin signalling is delayed in circadian mutant mice, and both Clock5,6 and Bmal17 (also called Arntl) mutants show impaired glucose tolerance, reduced insulin secretion and defects in size and proliferation of pancreatic islets that worsen with age. Clock disruption leads to transcriptome-wide alterations in the expression of islet genes involved in growth, survival and synaptic vesicle assembly. Notably, conditional ablation of the pancreatic clock causes diabetes mellitus due to defective β-cell function at the very latest stage of stimulus–secretion coupling. These results demonstrate a role for the β-cell clock in coordinating insulin secretion with the sleep–wake cycle, and reveal that ablation of the pancreatic clock can trigger the onset of diabetes mellitus.
- Published
- 2009
23. The Genetics of Mammalian Circadian Order and Disorder: Implications for Physiology and Disease
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Caroline H. Ko, Erin L. McDearmon, Joseph S. Takahashi, and Hee Kyung Hong
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ved/biology.organism_classification_rank.species ,Physiology ,Disease ,Behavioural disorders ,Biology ,Chronobiology Disorders ,Models, Biological ,Article ,Drug Administration Schedule ,Drug Therapy ,Biological Clocks ,Genetics ,Animals ,Humans ,Gene Regulatory Networks ,Circadian rhythm ,Model organism ,Molecular Biology ,Genetics (clinical) ,Feedback, Physiological ,ved/biology ,Mood Disorders ,Brain ,Circadian Rhythm ,Organ Specificity - Abstract
Circadian cycles affect a variety of physiological processes, and disruptions of normal circadian biology therefore have the potential to influence a range of disease-related pathways. The genetic basis of circadian rhythms is well studied in model organisms and, more recently, studies of the genetic basis of circadian disorders has confirmed the conservation of key players in circadian biology from invertebrates to humans. In addition, important advances have been made in understanding how these molecules influence physiological functions in tissues throughout the body. Together, these studies set the scene for applying our knowledge of circadian biology to the understanding and treatment of a range of human diseases, including cancer, and metabolic and behavioural disorders.
- Published
- 2008
24. Casein kinase I epsilon gene transfer into the suprachiasmatic nucleus via electroporation lengthens circadian periods of tau mutant hamsters
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Haoran, Wang, Caroline H, Ko, Margaret M, Koletar, Martin R, Ralph, and John, Yeomans
- Subjects
Animals, Genetically Modified ,Male ,Electroporation ,Time Factors ,Transcription, Genetic ,Casein Kinase 1 epsilon ,Cricetinae ,Mutation ,Animals ,Suprachiasmatic Nucleus ,tau Proteins ,Circadian Rhythm - Abstract
Circadian activity rhythms in mammals are controlled by the expression and transcriptional regulation of clock genes in the suprachiasmatic nucleus (SCN). The circadian cycle length in hamsters is regulated in part by casein kinase I epsilon (CKIepsilon). A semidominant mutation (C--T, R178C, CKIepsilon(tau)) appears to act as a dominant-negative allele to shorten the period of circadian rhythms. We tested this hypothesis in vivo by expressing wild-type CKIepsilon gene in homozygous tau mutant hamsters. High-level CKIepsilon(+/+) gene transfer and expression (as indicated by green fluorescent protein) were obtained by injecting CKIepsilon-containing plasmids bilaterally near the SCN, followed by in vivo electroporation. Rhythmicity reappeared 5-7 days after electroporation, with a gradual increase in circadian period over the next 10 days. The circadian period returned to the baseline over the next 20 days. For the five hamsters with clearest gene expression in the SCN, the mean lengthening time was 39.6 min. Period change was not observed in either control tau mutant hamsters electroporated with plasmids lacking the CKIepsilon gene or in wild-type hamsters with plasmids containing the wild-type CKIepsilon gene. Therefore, normal periodicity in homozygous CKIepsilon(tau) hamsters was partially rescued by expression of the wild-type CKIepsilon gene in the SCN, supporting a competitive and dominant-negative action of the mutant allele. This study shows that electroporation of wild-type CKIepsilon gene into the SCN is sufficient for lengthening the shorter circadian period of tau mutant hamsters in a time-dependent way and supports the conclusion that CKIepsilon(tau) is the cause of the shorter period.
- Published
- 2007
25. Inducible and Reversible Clock Gene Expression in Brain Using the tTA System for the Study of Circadian Behavior
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Eun Joo Song, Jason L. Chong, Andrew C. Schook, Amira A. Jyawook, Weimin Song, Caroline H. Ko, Hee Kyung Hong, and Joseph S. Takahashi
- Subjects
Cancer Research ,lcsh:QH426-470 ,Light ,Physiology ,Period (gene) ,Circadian clock ,Genetic Vectors ,Molecular Sequence Data ,CLOCK Proteins ,Mice, Transgenic ,Biology ,Motor Activity ,Biochemistry ,Models, Biological ,Transactivation ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Genetics ,Animals ,Circadian rhythm ,Transgenes ,Molecular Biology ,Genetics (clinical) ,Ecology, Evolution, Behavior and Systematics ,030304 developmental biology ,Regulation of gene expression ,0303 health sciences ,Behavior, Animal ,Suprachiasmatic nucleus ,Brain ,Genetics and Genomics ,Mus (Mouse) ,Molecular biology ,Circadian Rhythm ,CLOCK ,Mice, Inbred C57BL ,lcsh:Genetics ,Gene Expression Regulation ,Doxycycline ,Trans-Activators ,030217 neurology & neurosurgery ,Research Article ,Neuroscience - Abstract
The mechanism of circadian oscillations in mammals is cell autonomous and is generated by a set of genes that form a transcriptional autoregulatory feedback loop. While these “clock genes” are well conserved among animals, their specific functions remain to be fully understood and their roles in central versus peripheral circadian oscillators remain to be defined. We utilized the in vivo inducible tetracycline-controlled transactivator (tTA) system to regulate Clock gene expression conditionally in a tissue-specific and temporally controlled manner. Through the use of Secretogranin II to drive tTA expression, suprachiasmatic nucleus– and brain-directed expression of a tetO::ClockΔ19 dominant-negative transgene lengthened the period of circadian locomotor rhythms in mice, whereas overexpression of a tetO::Clockwt wild-type transgene shortened the period. Low doses (10 μg/ml) of doxycycline (Dox) in the drinking water efficiently inactivated the tTA protein to silence the tetO transgenes and caused the circadian periodicity to return to a wild-type state. Importantly, low, but not high, doses of Dox were completely reversible and led to a rapid reactivation of the tetO transgenes. The rapid time course of tTA-regulated transgene expression demonstrates that the CLOCK protein is an excellent indicator for the kinetics of Dox-dependent induction/repression in the brain. Interestingly, the daily readout of circadian period in this system provides a real-time readout of the tTA transactivation state in vivo. In summary, the tTA system can manipulate circadian clock gene expression in a tissue-specific, conditional, and reversible manner in the central nervous system. The specific methods developed here should have general applicability for the study of brain and behavior in the mouse., Author Summary Although significant progress has been made in unraveling the molecular mechanism of circadian clocks in mammals, previous work has focused on germline mutations and in vitro methods for analysis. To address the function of clock genes, it is necessary to develop tools to manipulate circadian genes in a conditional and tissue-specific manner in vivo. We report such an approach using the tetracycline transactivator system. Despite the development of the “tet” system in transgenic mice over 10 y ago by Bujard and colleagues, there are still relatively few examples of the successful use of the tet system in the central nervous system. Transgenic expression of the Clock gene in the suprachiasmatic nucleus and brain of mice regulated the period length of circadian locomotor rhythms. These effects could be inhibited by low doses of doxycycline in the drinking water. Importantly, low, but not high, doses of doxycycline were completely reversible and led to a rapid reactivation of the Clock transgenes. In summary, the tetracycline-controlled transactivator system can manipulate circadian clock gene expression in a tissue-specific, conditional, and reversible manner in the central nervous system. The specific methods developed here should have general applicability for the study of brain and behavior in the mouse.
- Published
- 2007
26. Dissecting the Functions of the Mammalian Clock Protein BMAL1 by Tissue-Specific Rescue in Mice
- Author
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Andrew C. Schook, Eun Joo Song, Kush N. Patel, Hee Kyung Hong, Joseph S. Takahashi, Erin L. McDearmon, Jacqueline A. Walisser, Christopher A. Bradfield, Jason L. Chong, Lisa D. Wilsbacher, and Caroline H. Ko
- Subjects
Genetically modified mouse ,medicine.medical_specialty ,endocrine system ,Chromosomes, Artificial, Bacterial ,Transgene ,Longevity ,Gene Expression ,Cell Cycle Proteins ,Mice, Transgenic ,Biology ,Motor Activity ,Article ,Tendons ,Mice ,Internal medicine ,Gene expression ,medicine ,Basic Helix-Loop-Helix Transcription Factors ,Animals ,Circadian rhythm ,Muscle, Skeletal ,Transcription factor ,Multidisciplinary ,ARNTL Transcription Factors ,Suprachiasmatic nucleus ,Body Weight ,Brain ,Calcinosis ,Nuclear Proteins ,Period Circadian Proteins ,Circadian Rhythm ,Mice, Inbred C57BL ,Endocrinology ,Organ Specificity ,Suprachiasmatic Nucleus ,Transcription Factors - Abstract
The basic helix-loop-helix (bHLH)–Per-Arnt-Sim (PAS) domain transcription factor BMAL1 is an essential component of the mammalian circadian pacemaker. Bmal1 –/– mice lose circadian rhythmicity but also display tendon calcification and decreased activity, body weight, and longevity. To investigate whether these diverse functions of BMAL1 are tissue-specific, we produced transgenic mice that constitutively express Bmal1 in brain or muscle and examined the effects of rescued gene expression in Bmal1 –/– mice. Circadian rhythms of wheel-running activity were restored in brain-rescued Bmal1 –/– mice in a conditional manner; however, activity levels and body weight were lower than those of wild-type mice. In contrast, muscle-rescued Bmal1 –/– mice exhibited normal activity levels and body weight yet remained behaviorally arrhythmic. Thus, Bmal1 has distinct tissue-specific functions that regulate integrative physiology.
- Published
- 2006
27. Molecular components of the mammalian circadian clock
- Author
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Caroline H. Ko and Joseph S. Takahashi
- Subjects
endocrine system ,Circadian clock ,Gene Expression ,Biology ,Mice ,Genetics ,Animals ,Humans ,Tissue Distribution ,Oscillating gene ,Molecular Biology ,Genetics (clinical) ,Feedback, Physiological ,NPAS2 ,Models, Genetic ,Suprachiasmatic nucleus ,General Medicine ,Bacterial circadian rhythms ,Cell biology ,Circadian Rhythm ,CLOCK ,Phenotype ,Light effects on circadian rhythm ,Mutation ,Suprachiasmatic Nucleus ,sense organs ,PER1 - Abstract
Circadian rhythms are approximately 24-h oscillations in behavior and physiology, which are internally generated and function to anticipate the environmental changes associated with the solar day. A conserved transcriptional-translational autoregulatory loop generates molecular oscillations of 'clock genes' at the cellular level. In mammals, the circadian system is organized in a hierarchical manner, in which a master pacemaker in the suprachiasmatic nucleus (SCN) regulates downstream oscillators in peripheral tissues. Recent findings have revealed that the clock is cell-autonomous and self-sustained not only in a central pacemaker, the SCN, but also in peripheral tissues and in dissociated cultured cells. It is becoming evident that specific contribution of each clock component and interactions among the components vary in a tissue-specific manner. Here, we review the general mechanisms of the circadian clockwork, describe recent findings that elucidate tissue-specific expression patterns of the clock genes and address the importance of circadian regulation in peripheral tissues for an organism's overall well-being.
- Published
- 2006
28. Time of day modulation of conditioned place preference in rats depends on the strain of rat used
- Author
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Martin R. Ralph, Jennifer A. Chalmers, Caroline H. Ko, and Sean W. Cain
- Subjects
Male ,medicine.medical_specialty ,Cognitive Neuroscience ,Conditioning, Classical ,Experimental and Cognitive Psychology ,Context (language use) ,Developmental psychology ,Behavioral Neuroscience ,Time of day ,Species Specificity ,Internal medicine ,medicine ,Animals ,Rats, Long-Evans ,Circadian rhythm ,Rats, Wistar ,Strain (chemistry) ,Association Learning ,Recognition, Psychology ,Long evans ,Housing, Animal ,Conditioned place preference ,Preference ,Circadian Rhythm ,Rats ,Endocrinology ,Conditioning ,Psychology ,Neuroscience ,Reinforcement, Psychology - Abstract
In golden hamsters, the expression of a conditioned place preference (CPP) or avoidance (CPA) is regulated in a circadian pattern such that the preference and avoidance are exhibited strongly at the circadian time of prior training, but not at other circadian times. In the rat, reports are conflicting regarding whether time of day learning is evident. We investigated whether this conflict arises because different strains of rat have been used. In this experiment, Long Evans and Wistar rats were trained at a specific circadian time to discriminate between a context paired with food reward and an unpaired context. Animals were then tested for preference at the same or a different circadian time. Long Evans rats showed preference for the paired context at both times tested, whereas Wistar rats showed preference only when training and testing times matched. The results show that time of day learning can be generalized to rats using the Wistar strain.
- Published
- 2003
29. The significance of circadian phase for performance on a reward-based learning task in hamsters
- Author
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Caroline H. Ko, Elena A. Antoniadis, Carmella Presta, Martin R. Ralph, Farzin Irani, Robert J. McDonald, and Petula Seco
- Subjects
Male ,Recall ,Mesocricetus ,Mechanism (biology) ,Cognition ,Context (language use) ,Preference ,Conditioned place preference ,Developmental psychology ,Task (project management) ,Circadian Rhythm ,Discrimination Learning ,Behavioral Neuroscience ,Reward ,Cricetinae ,Animals ,Conditioning, Operant ,Circadian rhythm ,Cues ,Psychology ,Lighting ,Psychomotor Performance ,Cognitive psychology - Abstract
In humans and animal models, circadian modulation of learning has been demonstrated on numerous tests. However, it is unclear which aspects of the cognitive process are rhythmically regulated. In these experiments, we used a conditioned place preference task in hamsters to ask whether memory acquisition (hypothesis 1) or memory recall and performance (hypothesis 2) were subject to circadian modulation. In golden hamsters, access to a running wheel has been used as a reward to condition a place preference, but when given unrestricted access to a wheel, animals perform most of their spontaneous running within a few hours each day or circadian cycle. This suggested that either the perceived reward value of the wheel changes through the day or that the response to this reward is temporally restricted. Contrary to the hypotheses, we found that learning was not tied to the time of training nor to the time of testing, but rather animals showed a preference for a reward-paired context only at the circadian time that training had taken place. Timing is not an explicit discriminative cue in these experiments. Hence, the learning mechanism must be predisposed to register circadian time as an attribute during context learning.
- Published
- 2002
30. Female zebrafish (Danio rerio) demonstrate stronger preference for established shoals over newly-formed shoals in the three-tank open-swim preference test
- Author
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Andrew J. Velkey, Caroline H. Koon, Isabel A. Danstrom, and Katie M. Wiens
- Subjects
Medicine ,Science - Abstract
Zebrafish (Danio rerio) share a considerable amount of biological similarity with mammals, including identical or homologous gene expression pathways, neurotransmitters, hormones, and cellular receptors. Zebrafish also display complex social behaviors like shoaling and schooling, making them an attractive model for investigating normal social behavior as well as exploring impaired social function conditions such as autism spectrum disorders. Newly-formed and established shoals exhibit distinct behavior patterns and inter-member interactions that can convey the group’s social stability. We used a three-chamber open-swim preference test to determine whether individual zebrafish show a preference for an established shoal over a newly-formed shoal. Results indicated that both sexes maintained greater proximity to arena zones nearest to the established shoal stimulus. In addition, we report the novel application of Shannon entropy to discover sex differences in systematicity of responses not revealed by unit-based measurements; male subjects spent more time investigating between the two shoals than female subjects. This novel technique using established versus newly-formed shoals can be used in future studies testing transgenics and pharmacological treatments that mimic autism spectrum disorder and other disorders that affect social interaction.
- Published
- 2022
31. Circadian rhythms, aging and memory
- Author
-
Caroline H. Ko, Elena A. Antoniadis, Robert J. McDonald, and Martin R. Ralph
- Subjects
Male ,Aging ,Conditioning, Classical ,Context (language use) ,Motor Activity ,Choice Behavior ,Developmental psychology ,Behavioral Neuroscience ,Rhythm ,Estrus ,Reward ,Memory ,Cricetinae ,Animals ,Humans ,Effects of sleep deprivation on cognitive performance ,Circadian rhythm ,Motivation ,Mesocricetus ,Suprachiasmatic nucleus ,Memoria ,Cognition ,Conditioned place preference ,Circadian Rhythm ,Mental Recall ,Conditioning, Operant ,Female ,Suprachiasmatic Nucleus ,Psychology ,Neuroscience - Abstract
In human beings and animal models, cognitive performance is often impaired in natural and experimental situations where circadian rhythms are disrupted. This includes a general decline in cognitive ability and fragmentation of behavioural rhythms in the aging population of numerous species. There is some evidence that rhythm disruption may lead directly to cognitive impairment; however, this causal link has not been made for effects due to aging. We have tested this link by examining rhythms and performance on contextual conditioning with the conditioned place preference task, in elderly, age-matched hamsters. Young healthy hamsters developed a preference for a context that is paired with the opportunity to engage in wheel-running (experiment 1). Aged animals with consolidated locomotor rhythms developed similar degrees of preference, whereas the age-matched hamsters with fragmented rhythms did not (experiment 2). The degree of preference was also correlated with activity amplitude. These results support the notion that age-related rhythm fragmentation contributes to the age-related memory decline.
- Published
- 2000
32. Intercellular Coupling Confers Robustness against Mutations in the SCN Circadian Clock Network
- Author
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Steve A. Kay, Inder M. Verma, Caroline H. Ko, Francis J. Doyle, Joseph S. Takahashi, Eric E. Zhang, David K. Welsh, Kirsten Meeker, Oded Singer, Andrew C. Liu, Ethan D. Buhr, Hien G. Tran, and Aaron A. Priest
- Subjects
endocrine system ,animal structures ,Circadian clock ,Cell Cycle Proteins ,Motor Activity ,Biology ,Article ,General Biochemistry, Genetics and Molecular Biology ,MOLNEURO ,Mice ,Cryptochrome ,Biological Clocks ,Animals ,Cells, Cultured ,Neurons ,Genetics ,Flavoproteins ,Biochemistry, Genetics and Molecular Biology(all) ,Suprachiasmatic nucleus ,Nuclear Proteins ,Period Circadian Proteins ,Fibroblasts ,Circadian Rhythm ,Cell biology ,Cryptochromes ,PER2 ,PER3 ,Light effects on circadian rhythm ,Mutation ,Suprachiasmatic Nucleus ,sense organs ,hormones, hormone substitutes, and hormone antagonists ,Transcription Factors ,PER1 - Abstract
SummaryMolecular mechanisms of the mammalian circadian clock have been studied primarily by genetic perturbation and behavioral analysis. Here, we used bioluminescence imaging to monitor Per2 gene expression in tissues and cells from clock mutant mice. We discovered that Per1 and Cry1 are required for sustained rhythms in peripheral tissues and cells, and in neurons dissociated from the suprachiasmatic nuclei (SCN). Per2 is also required for sustained rhythms, whereas Cry2 and Per3 deficiencies cause only period length defects. However, oscillator network interactions in the SCN can compensate for Per1 or Cry1 deficiency, preserving sustained rhythmicity in mutant SCN slices and behavior. Thus, behavior does not necessarily reflect cell-autonomous clock phenotypes. Our studies reveal previously unappreciated requirements for Per1, Per2, and Cry1 in sustaining cellular circadian rhythmicity and demonstrate that SCN intercellular coupling is essential not only to synchronize component cellular oscillators but also for robustness against genetic perturbations.
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- View/download PDF
33. Emergence of noise-induced oscillations in the central circadian pacemaker.
- Author
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Caroline H Ko, Yujiro R Yamada, David K Welsh, Ethan D Buhr, Andrew C Liu, Eric E Zhang, Martin R Ralph, Steve A Kay, Daniel B Forger, and Joseph S Takahashi
- Subjects
Biology (General) ,QH301-705.5 - Abstract
Bmal1 is an essential transcriptional activator within the mammalian circadian clock. We report here that the suprachiasmatic nucleus (SCN) of Bmal1-null mutant mice, unexpectedly, generates stochastic oscillations with periods that overlap the circadian range. Dissociated SCN neurons expressed fluctuating levels of PER2 detected by bioluminescence imaging but could not generate circadian oscillations intrinsically. Inhibition of intercellular communication or cyclic-AMP signaling in SCN slices, which provide a positive feed-forward signal to drive the intracellular negative feedback loop, abolished the stochastic oscillations. Propagation of this feed-forward signal between SCN neurons then promotes quasi-circadian oscillations that arise as an emergent property of the SCN network. Experimental analysis and mathematical modeling argue that both intercellular coupling and molecular noise are required for the stochastic rhythms, providing a novel biological example of noise-induced oscillations. The emergence of stochastic circadian oscillations from the SCN network in the absence of cell-autonomous circadian oscillatory function highlights a previously unrecognized level of circadian organization.
- Published
- 2010
- Full Text
- View/download PDF
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