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Summary: Plant response to water stress involves multiple timescales. In the short term, stomatal adjustments optimize some fitness function commonly related to carbon uptake, while in the long term, traits including xylem resilience are adjusted. These optimizations are usually considered independently, the former involving stomatal aperture and the latter carbon allocation. However, short‐ and long‐term adjustments are interdependent, as 'optimal' in the short term depends on traits set in the longer term.An economics framework is used to optimize long‐term traits that impact short‐term stomatal behavior. Two traits analyzed here are the resilience of xylem and the resilience of nonstomatal limitations (NSLs) to photosynthesis at low‐water potentials.Results show that optimality requires xylem resilience to increase with climatic aridity. Results also suggest that the point at which xylem reach 50% conductance and the point at which NSLs reach 50% capacity are constrained to approximately a 2 : 1 linear ratio; however, this awaits further experimental verification.The model demonstrates how trait coordination arises mathematically, and it can be extended to many other traits that cross timescales. With further verification, these results could be used in plant modelling when information on plant traits is limited. [ABSTRACT FROM AUTHOR]

With the rapid development of satellite remote sensing technology, carbon-cycle research, as a key focus of global climate change, has also been widely developed in terms of carbon source/sink-research methods. The internationally recognized "top-down" approach, which is based on satellite observations, is an important means to verify greenhouse gas-emission inventories. This article reviews the principles, categories, and development of satellite detection payloads for greenhouse gases and introduces inversion algorithms and datasets for satellite remote sensing of XCO2. It emphasizes inversion methods based on machine learning and assimilation algorithms. Additionally, it presents the technology and achievements of carbon-assimilation systems used to estimate carbon fluxes. Finally, the article summarizes and prospects the future development of carbon-assimilation inversion to improve the accuracy of estimating and monitoring Earth's carbon-cycle processes. [ABSTRACT FROM AUTHOR]

Photorespiration is an essential process related to photosynthesis that is initiated following the oxygenation reaction catalyzed by rubisco, the initial enzyme of the Calvin–Benson–Bassham cycle. This reaction produces an inhibitory intermediate that is recycled back into the Calvin–Benson–Bassham cycle by photorespiration which requires the use of energy and the release of a portion of the carbon as CO2. The energy use and CO2 release of canonical photorespiration form a foundation for biochemical models used to describe and predict leaf carbon exchange and energy use (ATP and NAPDH). The ATP and NADPH demand of canonical photorespiration is thought to be different than that of the Calvin–Benson–Bassham cycle, requiring increased flexibility in the ratio of ATP and NADPH from the light reactions. Photorespiration requires many reactions across the chloroplasts, mitochondria and peroxisomes and involves many intermediates. Growing evidence indicates that these intermediates do not all stay in photorespiration as typically assumed and instead feed into other aspects of metabolism and leave as glycine, serine, and methylene‐THF. Here we discuss how alternative flux through and from canonical photorespiration alters the ATP and NADPH requirements of metabolism following rubisco oxygenation using additional derivations of biochemical models of leaf photosynthesis and energetics. Using these new derivations, we determine that the ATP and NADPH demands of photorespiration are highly sensitive to alternative flux in ways that fundamentally changes how photorespiration contributes to the ratio of total ATP and NADPH demand. Specifically, alternative flows of carbon through photorespiration could reduce ATP and NADPH demand ratio to values below what is produced from linear electron transport. Summary statement: All carbon produced following rubisco‐catalyzed reaction with oxygen may not flow through textbook photorespiration. Here we review the consequences of this "noncanonical" carbon flow to the ATP and NADPH demands of this vital process. [ABSTRACT FROM AUTHOR]

Stomatal opening in plant leaves is regulated through a balance of carbon and water exchange under different environmental conditions. Accurate estimation of stomatal regulation is crucial for understanding how plants respond to changing environmental conditions, particularly under climate change. A new generation of optimality‐based modelling schemes determines instantaneous stomatal responses from a balance of trade‐offs between carbon gains and hydraulic costs, but most such schemes do not account for biochemical acclimation in response to drought. Here, we compare the performance of six instantaneous stomatal optimisation models with and without accounting for photosynthetic acclimation. Using experimental data from 37 plant species, we found that accounting for photosynthetic acclimation improves the prediction of carbon assimilation in a majority of the tested models. Photosynthetic acclimation contributed significantly to the reduction of photosynthesis under drought conditions in all tested models. Drought effects on photosynthesis could not accurately be explained by the hydraulic impairment functions embedded in the stomatal models alone, indicating that photosynthetic acclimation must be considered to improve estimates of carbon assimilation during drought. Summary statement: Accounting for photosynthetic acclimation improves the predictions of carbon assimilation in all the stomatal optimisation models evaluated. The influence of drought on photosynthesis cannot be fully explained by the hydraulic impairment function of the stomatal models alone. [ABSTRACT FROM AUTHOR]

Grapevine rootstocks are gaining importance in viticulture as a strategy to combat abiotic challenges, as well as enhance scion physiology. Direct leaf-level physiological parameters like net assimilation rate, stomatal conductance to water vapor, quantum yield of PSII, and transpiration can illuminate the rootstock effect on scion physiology. However, these measures are time-consuming and limited to leaf-level analysis. This study used different rootstocks to investigate the potential application of aerial hyperspectral imagery in the estimation of canopy level measurements. A statistical framework was developed as an ensemble stacked regression (REGST) that aggregated five different individual machine learning algorithms: Least absolute shrinkage and selection operator (Lasso), Partial least squares regression (PLSR), Ridge regression (RR), Elastic net (ENET), and Principal component regression (PCR) to optimize high-throughput assessment of vine physiology. In addition, a Convolutional Neural Network (CNN) algorithm was integrated into an existing REGST, forming a hybrid CNN-REGST model with the aim of capturing patterns from the hyperspectral signal. Based on the findings, the performance of individual base models exhibited variable prediction accuracies. In most cases, Ridge Regression (RR) demonstrated the lowest test Root Mean Squared Error (RMSE). The ensemble stacked regression model (REGST) outperformed the individual machine learning algorithms with an increase in R2 by (0.03 to 0.1). The performances of CNN-REGST and REGST were similar in estimating the four different traits. Overall, these models were able to explain approximately 55–67% of the variation in the actual ground-truth data. This study suggests that hyperspectral features integrated with powerful AI approaches show great potential in tracing functional traits in grapevines. [ABSTRACT FROM AUTHOR]

Salt stress is one of the major adverse factors affecting plant growth and crop production. Rapeseed is an important oil crop, providing high-quality edible oil for human consumption. This experiment was conducted to investigate the effects of salt stress on the phenotypic traits and physiological processes of rapeseed. The soil salinity was manipulated by setting three different levels: 0 g NaCl kg−1 soil (referred to as S0), 1.5 g NaCl kg−1 soil (referred to as S1), and 3.0 g NaCl kg−1 soil (referred to as S2). In general, the results indicated that the plant height, leaf area, and root neck diameter decreased with an increase in soil salinity. In addition, the biomass of various organs at all growth stages decreased as soil salinity increased from S0 to S2. The increasing soil salinity improved the distribution of biomass in the root and leaf at the seedling and flowering stages, indicating that rapeseed plants subjected to salt stress during the vegetative stage are capable of adapting their growth pattern to sustain their capacity for nutrient and water uptake, as well as leaf photosynthesis. However, as the soil salinity increased, there was a decrease in the distribution of biomass in the pod and seed at the maturity stage, while an increase was observed in the root and stem, suggesting that salt stress inhibited carbohydrate transport into reproductive organs. Moreover, the C and N accumulation at the flowering and maturity stages exhibited a reduction in direct correlation with the increase in soil salinity. High soil salinity resulted in a reduction in the C/N, indicating that salt stress exerted a greater adverse effect on C assimilation compared to N assimilation, leading to an increase in seed protein content and a decrease in oil content. Furthermore, as soil salinity increased from S0 to S2, the activity of superoxide dismutase (SOD) and catalase (CAT) and the content of soluble protein and sugar increased by 58.39%, 33.38%, 15.57%, and 13.88% at the seedling stage, and 38.69%, 22.85%, 12.04%, and 8.26% at the flowering stage, respectively. In summary, this study revealed that salt stress inhibited C and N assimilation, leading to a suppressed phenotype and biomass accumulation. The imbalanced C and N assimilation under salt stress contributed to the alterations in the seed oil and protein content. Rapeseed had a certain degree of salt tolerance by improving antioxidants and osmolytes. [ABSTRACT FROM AUTHOR]

Addressing food security is a priority in developing countries. This study aimed to improve wheat yield by overexpressing the TaNF-YB4 transcription factor, which is involved in carbon assimilation and stress tolerance. An expression cassette for TaNF-YB4 was developed in a modified wheat transformation vector (pSB219) and examined through transient expression in Nicotiana tabacum, followed by Agrobacterium-mediated transformation of wheat variety FSD-2008. T0 transgenic plants were propagated to obtain T3 generation PCR-positive plants. Transgene expression was assessed in PCR-verified T2 plants using RT-PCR and qRT-PCR at six weeks post-germination. qRT-PCR analysis using the ΔΔCT method indicated higher TaNF-YB4 expression in transgenic lines than in the wild-type control plants. Improved agronomic and phenotypic traits were observed with a 6–36 % increase in 1000-grain weight in the selected transgenic lines. Root architecture assessments demonstrated enhanced root length, surface area, and projected area in transgenic lines compared with wild-type plants. Additionally, notable variances in total chlorophyll, protein, and sugar content levels were observed between the transgenic lines and control plants, demonstrating statistical significance with a p-value ≤ 0.05. This study indicates that low-level constitutive expression of TaNF-YB4 can enhance wheat yield, presenting a viable strategy for improving wheat productivity.

Leaf gas exchange measurements are an important tool for inferring a plant's photosynthetic biochemistry. In most cases, the responses of photosynthetic CO2 assimilation to variable intercellular CO2 concentrations (A/Ci response curves) are used to model the maximum (potential) rate of carboxylation by ribulose‐1,5‐bisphosphate carboxylase/oxygenase (Rubisco, Vcmax) and the rate of photosynthetic electron transport at a given incident photosynthetically active radiation flux density (PAR; JPAR). The standard Farquhar‐von Caemmerer‐Berry model is often used with default parameters of Rubisco kinetic values and mesophyll conductance to CO2 (gm) derived from tobacco that may be inapplicable across species. To study the significance of using such parameters for other species, here we measured the temperature responses of key in vitro Rubisco catalytic properties and gm in cotton (Gossypium hirsutum cv. Sicot 71) and derived Vcmax and J2000 (JPAR at 2000 µmol m−2 s−1 PAR) from cotton A/Ci curves incrementally measured at 15°C–40°C using cotton and other species‐specific sets of input parameters with our new automated fitting R package 'OptiFitACi'. Notably, parameterisation by a set of tobacco parameters produced unrealistic J2000:Vcmax ratio of <1 at 25°C, two‐ to three‐fold higher estimates of Vcmax above 15°C, up to 2.3‐fold higher estimates of J2000 and more variable estimates of Vcmax and J2000, for our cotton data compared to model parameterisation with cotton‐derived values. We determined that errors arise when using a gm,25 of 2.3 mol m−2 s−1 MPa−1 or less and Rubisco CO2‐affinities in 21% O2 (KC21%O2) at 25°C outside the range of 46–63 Pa to model A/Ci responses in cotton. We show how the A/Ci modelling capabilities of 'OptiFitACi' serves as a robust, user‐friendly, and flexible extension of 'plantecophys' by providing simplified temperature‐sensitivity and species‐specificity parameterisation capabilities to reduce variability when modelling Vcmax and J2000. Summary statement: This manuscript demonstrates the importance of species‐specific parameterisation of A/Ci response models for accurate modelling of key photosynthetic parameters in cotton (Gossypium hirsutum). [ABSTRACT FROM AUTHOR]

Damask rose is an important essential oil crop. In the present study, plants were subjected to three different water deficit levels (70, 40, and 10% available water content) for two periods (June–October). Plant phenology, growth, essential oil yield, gas exchange features, membrane stability and major antioxidant defense elements were monitored across two years. Soil water deficit was related to quicker completion of the growth cycle (up to 7.4 d), and smaller plants (up to 49.7%). Under these conditions, biomass accumulation was jointly constrained by decreased leaf area, chlorophyll content, CO2 intake, and photosynthetic efficiency (up to 82.8, 56.9, 27.3 and 68.2%, respectively). The decrease in CO2 intake was driven by a reduction in stomatal conductance (up to 41.2%), while the decrease in leaf area was mediated by reductions in both number of leaves, and individual leaf area (up to 54.3, and 64.0%, respectively). Although the reactive oxygen species scavenging system was activated (i.e., proline accumulation, and enhanced activity of three antioxidant enzymes) by water deficit, oxidative stress symptoms were still apparent. These effects were amplified, as soil water deficit became more intense. Notably, the adverse effects of water deficit were generally less pronounced when plants had been exposed to water severity during the preceding year. Therefore, exposure to water deficit elicited plant tolerance to future exposure. This phenotypic response was further dependent on the water deficit level. At more intense soil water deficit across the preceding year, plants were less vulnerable to water deficit during the subsequent one. Therefore, our results reveal a direct link between water deficit severity and plant tolerance to future water stress challenges, providing for the first time evidence for stress memory in damask rose. [ABSTRACT FROM AUTHOR]

Photosynthesis is a crucial process that impacts ecosystem productivity and functioning. It is influenced by current and projected future global changes, and understanding how photosynthesis responds to these changes is important for predicting the services provided by terrestrial ecosystems. While short-term responses of photosynthesis to environmental change are well understood, the longer-term process of acclimation is less known. There are uncertainties regarding the timescale and component of environmental variability to which photosynthetic traits acclimate, as well as the interplay between resource supply and demand in influencing photosynthetic acclimation. Further research and collaboration are needed to address these gaps in knowledge. [Extracted from the article]

Background: Rubisco activase (RCA) is a pivotal enzyme that can catalyse the activation of Rubisco in carbon assimilation pathway. Many studies have shown that RCA may be a potential target for genetic manipulation aimed at enhancing photosynthetic efficiency and crop yield. Objective: To understand the biological function of the GhRCAβ2 gene in upland cotton, we cloned the coding sequence (CDS) of the GhRCAβ2 gene and investigated its sequence features, evolutionary relationship, subcellular localization, promoter sequence and expression pattern. Methods: The bioinformatics tools were used to analyze the sequence features of GhRCAβ2 protein. Transient transformation of Arabidopsis mesophyll protoplasts was performed to determine the subcellular localization of the GhRCAβ2 protein. The expression pattern of the GhRCAβ2 gene was examined by analyzing transcriptome data and using the quantitative real-time PCR (qRT-PCR). Results: The full-length CDS of GhRCAβ2 was 1317 bp, and it encoded a protein with a chloroplast transit peptide. The GhRCAβ2 had two conserved ATP-binding domains, and did not have the C-terminal extension (CTE) domain that was unique to the RCA α-isoform in plants. Evolutionarily, GhRCAβ2 was clustered in Group A, and had a close evolutionary relationship with the soybean RCA. Western blot analysis demonstrated that GhRCAβ2 was immunoreactive to the RCA antibody displaying a molecular weight similar to that of the RCA β-isoform. The GhRCAβ2 protein was found in chloroplast, aligning with its role as a vital enzyme in the process of photosynthesis. The GhRCAβ2 gene had a leaf tissue-specific expression pattern, and the yellow-green leaf mutant exhibited a decreased expression of GhRCAβ2 in comparison to the wild-type cotton plants. The GhRCAβ2 promoter contained several cis-acting elements that respond to light, phytohormones and stress, suggesting that the expression of GhRCAβ2 may be regulated by these factors. An additional examination of stress response indicated that GhRCAβ2 expression was influenced by cold, heat, salt, and drought stress. Notably, diverse expression pattern was observed across different stress conditions. Additionally, low phosphorus and low potassium stress may result in a notable reduction in the expression of GhRCAβ2 gene. Conclusion: Our findings will establish a basis for further understanding the function of the GhRCAβ2 gene, as well as providing valuable genetic knowledge to improve cotton photosynthetic efficiency and yield under challenging environmental circumstances. [ABSTRACT FROM AUTHOR]

This document is an editorial published in the journal Frontiers in Plant Science. It discusses the adaptation of plants to waterlogging and hypoxia, which are challenges caused by climate change and extreme weather events. The editorial highlights the physiological, molecular, and management strategies that plants employ to cope with these conditions. It also emphasizes the need for further research and practical applications to help farmers mitigate the negative effects of waterlogging. The document includes references to various studies that explore the impact of waterlogging on plant growth and yield, as well as potential solutions for improving crop resilience. [Extracted from the article]

With the rapid development of satellite remote sensing technology, carbon-cycle research, as a key focus of global climate change, has also been widely developed in terms of carbon source/sink-research methods. The internationally recognized “top-down” approach, which is based on satellite observations, is an important means to verify greenhouse gas-emission inventories. This article reviews the principles, categories, and development of satellite detection payloads for greenhouse gases and introduces inversion algorithms and datasets for satellite remote sensing of XCO2. It emphasizes inversion methods based on machine learning and assimilation algorithms. Additionally, it presents the technology and achievements of carbon-assimilation systems used to estimate carbon fluxes. Finally, the article summarizes and prospects the future development of carbon-assimilation inversion to improve the accuracy of estimating and monitoring Earth’s carbon-cycle processes.

Summary: We present the Fast Assimilation‐Temperature Response (FAsTeR) method, a new method for measuring plant assimilation‐temperature (AT) response that reduces measurement time and increases data density compared with conventional methods.The FAsTeR method subjects plant leaves to a linearly increasing temperature ramp while taking rapid, nonequilibrium measurements of gas exchange variables. Two postprocessing steps are employed to correct measured assimilation rates for nonequilibrium effects and sensor calibration drift. Results obtained with the new method are compared with those from two conventional stepwise methods.Our new method accurately reproduces results obtained from conventional methods, reduces measurement time by a factor of c. 3.3 (from c. 90 to 27 min), and increases data density by a factor of c. 55 (from c. 10 to c. 550 observations). Simulation results demonstrate that increased data density substantially improves confidence in parameter estimates and drastically reduces the influence of noise.By improving measurement speed and data density, the FAsTeR method enables users to ask fundamentally new kinds of ecological and physiological questions, expediting data collection in short‐field campaigns, and improving the representativeness of data across species in the literature. [ABSTRACT FROM AUTHOR]

Global climate change is threatening the persistence of coral reefs as associated summer heatwaves trigger the loss of microalgal endosymbionts (Symbiodiniaceae) from the coral tissues, or coral bleaching. We infected aposymbiotic juveniles of the coral Acropora tenuis with either wildtype (WT10) or heat-evolved (SS1 or SS8) Symbiodiniaceae strains Cladocopium proliferum (formerly referred to as Cladocopium goreaui and Cladocopium C1acro). After 10 months at 27 °C, SS8-juveniles were 2 × larger than SS1- or WT10-juveniles. In response to a simulated heatwave (31 °C for 41 days), the WT10-juveniles bleached and showed a decline in respiration while cell densities and respiration in both SS-juvenile groups remained unchanged compared to the controls. These results reveal that some heat-evolved strains can increase the bleaching tolerance of juvenile corals without a trade-off against growth. This response is opposite to the lower nutrient provisioning often reported for naturally thermotolerant Symbiodiniaceae (e.g. genus Durusdinium), thereby offering enhanced fitness to the host without the ecological consequences of diminished growth. [ABSTRACT FROM AUTHOR]

It has been assumed that crops cultivated in agrivoltaics (AV) systems can produce enough carbohydrates through the process of photosynthesis because they are expose to an excess of light. However, many studies have shown increases in specific leaf area (SLA) under shading that can be associated to reductions in the photosynthetic capacity of leaves. This study aimed to evaluate the impact of severe and fluctuating AV shading on apple leaf morphophysiological characteristics (SLA and photosynthesis). 10-year-old ’Golden Delicious’ apple trees grown in a dynamic AV system were monitored over three consecutive seasons (2019 to 2021) along with a control without panels. From February 2019 until July 2021, the photovoltaic modules rotated to maximise tree shading (15 hours of shading per day in summer). From July 2021 onwards, a lighter shading strategy was tested (5.8 hours of shading per day in summer). SLA at several dates was always higher for trees in the AV system (bigger individual leaf area but thinner leaves). SLA was not modified when light availability was increased late in the season. Light response curves indicated a lower saturation point for leaves grown in the AV system and a linear negative relationship was found between SLA and maximal photosynthetic capacity. To avoid leaf morphology modifications due to shade acclimatation, we propose to avoid severe shading during leaf development. We expect this study will provide a better understanding on how to modulate the light microclimate at specific times of the season in dynamic AV systems.

Low concentration strontium (LC-Sr) can promote the growth of plants. In order to explore its promoting mechanism from the aspect of photosynthesis, the leaf characteristics, CO2 assimilation and chlorophyll (Chl) a fluorescence kinetics were investigated with hydroponically LC-Sr-treated Chinese cabbage seedlings. After a 28-d treatment to SrCl2 at different concentrations (0.1, 0.2, 0.5, and 1.0 mmol L−1), we observed an increase in the specific leaf weight (SLW) of Chinese cabbage compared with the control group. Notably, as the strontium concentration increased, a more pronounced improvement trend in the contents of Chl and protein in the leaves was observed, contributing to the enhancement of photosynthesis. However, the statistical differences in Pn among various LC-Sr treatments were not significant. Nevertheless, the leaf starch content exhibited a significant increase after LC-Sr treatments. Additionally, Chl a fluorescence transient has been used as a sensitive indicator of the promotional effect of LC-Sr on photosynthesis. The results of fluorescence parameters showed that LC-Sr treatments accelerated the light reaction speed of leaves (Tfm, dV/dto, dVG/dto), improved the energy utilization efficiency of photosystem (PSI and PSII) (ETo/CSo, ψET,ψRE, δRo, φRo), and ultimately enhanced the photosynthetic performance of leaves (PIabs, SFIabs, DFabs). The increased RCs/CSo and Sm contributed to the enhancement of the light reaction activity of strontium-treated leaves. The LC-Sr treatments had no interference with the calcium absorption, and notably enhanced the photosynthetic capacity of Chinese cabbage, shedding light on potential benefits of LC-Sr for crop cultivation.

The impact of salt stress is becoming more prevalent each year, largely due to the effects of climate change. Limited availability of salt-free water is rising concern for hydroponics lettuce production. Despite evidence supporting salt stress-induced quality losses and physiological changes, studies on romaine lettuce salt-stress tolerance are limited. This study examined the mechanism underlying the sodium chloride (NaCl) tolerance (0, 50, 100, and 150 mM) of lettuce on its growth and nutrition at late-rosette and early head-formation stages. Results revealed 76% fresh mass reduction under increased NaCl at both stages. The study also found unchanged carbon assimilation with reduced stomatal conductance under increased NaCl. Salt-stressed lettuce accumulated more boron and iron but had reduced phosphorus and calcium. Phenolics and sugars increased linearly under salt stress, suggesting that lettuce responds to increased oxidative stress at both stages. A positive association between salt treatment and sodium to potassium ion ratio indicated lettuce sensitivity to salt stress at both stages.

SUMMARY: Diurnal dark to light transition causes profound physiological changes in plant metabolism. These changes require distinct modes of regulation as a unique feature of photosynthetic lifestyle. The activities of several key metabolic enzymes are regulated by light‐dependent post‐translational modifications (PTM) and have been studied at depth at the level of individual proteins. In contrast, a global picture of the light‐dependent PTMome dynamics is lacking, leaving the response of a large proportion of cellular function undefined. Here, we investigated the light‐dependent metabolome and proteome changes in Arabidopsis rosettes in a time resolved manner to dissect their kinetic interplay, focusing on phosphorylation, lysine acetylation, and cysteine‐based redox switches. Of over 24 000 PTM sites that were detected, more than 1700 were changed during the transition from dark to light. While the first changes, as measured 5 min after onset of illumination, occurred mainly in the chloroplasts, PTM changes at proteins in other compartments coincided with the full activation of the Calvin–Benson cycle and the synthesis of sugars at later timepoints. Our data reveal connections between metabolism and PTM‐based regulation throughout the cell. The comprehensive multiome profiling analysis provides unique insight into the extent by which photosynthesis reprograms global cell function and adds a powerful resource for the dissection of diverse cellular processes in the context of photosynthetic function. [ABSTRACT FROM AUTHOR]

It has been shown that increased concentrations of zinc oxide nanoparticles (nano-ZnO) in the soil are harmful to plant growth. However, the sensitivity of different wheat cultivars to nano-ZnO stress is still unclear. To detect the physiological response process of wheat varieties with different tolerance to nano-ZnO stress, four wheat cultivars (viz., cv. TS1, ZM18, JM22, and LM6) with different responses to nano-ZnO stress were selected, depending on previous nano-ZnO stress trials with 120 wheat cultivars in China. The results found that nano-ZnO exposure reduced chlorophyll concentrations and photosynthetic electron transport efficiency, along with the depressed carbohydrate metabolism enzyme activities, and limited plant growth. Meanwhile, the genotypic variation in photosynthetic carbon assimilation under nano-ZnO stress was found in wheat plants. Wheat cv. JM22 and LM6 possessed relatively lower Zn concentrations and higher leaf nitrogen per area, less reductions in their net photosynthetic rate, a maximum quantum yield of the PS II (Fv/Fm), electron transport flux per cross-section (ETo/CSm), trapped energy flux per cross-section (TRo/CSm), and total soluble sugar and sucrose concentrations under nano-ZnO stress, showing a better tolerance to nano-ZnO stress than wheat cv. TS1 and ZM18. In addition, the chlorophyll a fluorescence parameters Fv/Fm, ETo/CSm, and TRo/CSm could be used to rapidly screen wheat varieties resistant to nano-ZnO stress. The results here provide a new approach for solving the issues of crop yield decline in regions polluted by heavy metal nanoparticles and promoting the sustainable utilization of farmland with heavy metal pollution. [ABSTRACT FROM AUTHOR]

Polygonatum odoratum (Mill.) Druce possesses widespread medicinal properties; however, the continuous cropping (CC) often leads to a severe consecutive monoculture problem (CMP), ultimately causing a decline in yield and quality. Photosynthesis is the fundamental process for plant growth development. Improving photosynthesis is one of the most promising approaches to increase plant yields. To better understand how P. odoratum leaves undergo photosynthesis in response to CC, this study analyzed the physiochemical indexes and RNA-seq. The physiochemical indexes, such as the content of chlorophyll (chlorophyll a, b, and total chlorophyll), light response curves (LRCs), and photosynthetic parameters (Fv/Fm, Fv/F0, Fm/F0, Piabs, ABS/RC, TRo/RC, ETo/RC, and DIo/RC) were all changed in P. odoratum under the CC system. Furthermore, 13,798 genes that exhibited differential expression genes (DEGs) were identified in the P. odoratum leaves of CC and first cropping (FC) plants. Among them, 7932 unigenes were upregulated, while 5860 unigenes were downregulated. Here, the DEGs encoding proteins associated with photosynthesis and carbon assimilation showed a significant decrease in expression under the CC system, such as the PSII protein complex, PSI protein complex, Cytochorome b6/f complex, the photosynthetic electron transport chain, light-harvesting chlorophyll protein complex, and Calvin cycle, etc., -related gene. This study demonstrates that CC can suppress photosynthesis and carbon mechanism in P. odoratum, pinpointing potential ways to enhance photosynthetic efficiency in the CC of plants. [ABSTRACT FROM AUTHOR]

Inoculation with Azospirillum brasilense has promisingly increased plant yield and nutrient acquisition. The study aimed to estimate the dose of A. brasilense that increases yield, gas exchange, nutrition, and foliar nitrate reduction. The research was carried out in a greenhouse at Ilha Solteira, in a hydroponic system in randomized blocks with four replicates. The treatments consisted of doses of inoculation with A. brasilense strains AbV5 and AbV6 via nutrient solution (0, 8, 16, 32, and 64 mL 100 L−1). Inoculation with A. brasilense at calculated doses between 20 and 44 mL provided the highest fresh and dry mass of shoots and roots, number of leaves, and leaf yield. In addition, the calculated doses of inoculation with A. brasilense increased the accumulation of N, P, K, Ca, Mg, S, B, Fe, Mn, and Zn in shoots and roots, except the accumulation of Ca in roots. It also increased cell membrane integrity index (15%), relative water content (13%), net photosynthesis rate (85%), intracellular CO2 concentration (15%), total chlorophyll (46%), stomatal conductance (56%), transpiration (15%), and water use efficiency (59%). Hence, inoculation with A. brasilense at doses between 20 and 44 mL 100 L−1 is considered the best approach for increasing the growth, yield, accumulation of nutrients, and gas exchange of hydroponically grown iceberg lettuce. [ABSTRACT FROM AUTHOR]

Mechanistic photosynthesis models are at the heart of terrestrial biosphere models (TBMs) simulating the daily, monthly, annual and decadal rhythms of carbon assimilation (A). These models are founded on robust mathematical hypotheses that describe how A responds to changes in light and atmospheric CO2 concentration. Two predominant photosynthesis models are in common usage: Farquhar (FvCB) and Collatz (CBGB). However, a detailed quantitative comparison of these two models has never been undertaken. In this study, we unify the FvCB and CBGB models to a common parameter set and use novel multi-hypothesis methods (that account for both hypothesis and parameter variability) for process-level sensitivity analysis. These models represent three key biological processes: carboxylation, electron transport, triose phosphate use (TPU) and an additional model process: limiting-rate selection. Each of the four processes comprises 1-3 alternative hypotheses giving 12 possible individual models with a total of 14 parameters. To broaden inference, TBM simulations were run and novel, high-resolution photosynthesis measurements were made. We show that parameters associated with carboxylation are the most influential parameters but also reveal the surprising and marked dominance of the limiting-rate selection process (accounting for 57% of the variation in A vs. 22% for carboxylation). The limiting-rate selection assumption proposed by CBGB smooths the transition between limiting rates and always reduces A below the minimum of all potentially limiting rates, by up to 25%, effectively imposing a fourth limitation on A. Evaluation of the CBGB smoothing function in three TBMs demonstrated a reduction in global A by 4%-10%, equivalent to 50%-160% of current annual fossil fuel emissions. This analysis reveals a surprising and previously unquantified influence of a process that has been integral to many TBMs for decades, highlighting the value of multi-hypothesis methods.

Salt stress is one of the major adverse factors affecting plant growth and crop production. Rapeseed is an important oil crop, providing high-quality edible oil for human consumption. This experiment was conducted to investigate the effects of salt stress on the phenotypic traits and physiological processes of rapeseed. The soil salinity was manipulated by setting three different levels: 0 g NaCl kg−1 soil (referred to as S0), 1.5 g NaCl kg−1 soil (referred to as S1), and 3.0 g NaCl kg−1 soil (referred to as S2). In general, the results indicated that the plant height, leaf area, and root neck diameter decreased with an increase in soil salinity. In addition, the biomass of various organs at all growth stages decreased as soil salinity increased from S0 to S2. The increasing soil salinity improved the distribution of biomass in the root and leaf at the seedling and flowering stages, indicating that rapeseed plants subjected to salt stress during the vegetative stage are capable of adapting their growth pattern to sustain their capacity for nutrient and water uptake, as well as leaf photosynthesis. However, as the soil salinity increased, there was a decrease in the distribution of biomass in the pod and seed at the maturity stage, while an increase was observed in the root and stem, suggesting that salt stress inhibited carbohydrate transport into reproductive organs. Moreover, the C and N accumulation at the flowering and maturity stages exhibited a reduction in direct correlation with the increase in soil salinity. High soil salinity resulted in a reduction in the C/N, indicating that salt stress exerted a greater adverse effect on C assimilation compared to N assimilation, leading to an increase in seed protein content and a decrease in oil content. Furthermore, as soil salinity increased from S0 to S2, the activity of superoxide dismutase (SOD) and catalase (CAT) and the content of soluble protein and sugar increased by 58.39%, 33.38%, 15.57%, and 13.88% at the seedling stage, and 38.69%, 22.85%, 12.04%, and 8.26% at the flowering stage, respectively. In summary, this study revealed that salt stress inhibited C and N assimilation, leading to a suppressed phenotype and biomass accumulation. The imbalanced C and N assimilation under salt stress contributed to the alterations in the seed oil and protein content. Rapeseed had a certain degree of salt tolerance by improving antioxidants and osmolytes.

Damask rose is an important essential oil crop. In the present study, plants were subjected to three different water deficit levels (70, 40, and 10% available water content) for two periods (June–October). Plant phenology, growth, essential oil yield, gas exchange features, membrane stability and major antioxidant defense elements were monitored across two years. Soil water deficit was related to quicker completion of the growth cycle (up to 7.4 d), and smaller plants (up to 49.7%). Under these conditions, biomass accumulation was jointly constrained by decreased leaf area, chlorophyll content, CO2 intake, and photosynthetic efficiency (up to 82.8, 56.9, 27.3 and 68.2%, respectively). The decrease in CO2 intake was driven by a reduction in stomatal conductance (up to 41.2%), while the decrease in leaf area was mediated by reductions in both number of leaves, and individual leaf area (up to 54.3, and 64.0%, respectively). Although the reactive oxygen species scavenging system was activated (i.e., proline accumulation, and enhanced activity of three antioxidant enzymes) by water deficit, oxidative stress symptoms were still apparent. These effects were amplified, as soil water deficit became more intense. Notably, the adverse effects of water deficit were generally less pronounced when plants had been exposed to water severity during the preceding year. Therefore, exposure to water deficit elicited plant tolerance to future exposure. This phenotypic response was further dependent on the water deficit level. At more intense soil water deficit across the preceding year, plants were less vulnerable to water deficit during the subsequent one. Therefore, our results reveal a direct link between water deficit severity and plant tolerance to future water stress challenges, providing for the first time evidence for stress memory in damask rose.

The development of mycorrhiza could contribute to strengthening the resilience of forest ecosystems to climate change. Several mycorrhizal fungi are known for their valuable effect in increasing plant performances and adaptation to stressful environmental conditions. Thereby, this research aims to investigate how Terfezia boudieri (Chatin) mycorrhizal fungi affects the growth (primary root length, above-ground plant weight) and the physiological behaviour (net photosynthesis, responses to intercellular [CO2] and the intensity of photosyntically active radiation) of Quercus subsp. coccifera and Q. suber L. Inoculated and non-inoculated seedlings of the two Quercus species were grown in one-liter pots in the greenhouse, with a temperature that ranged from 25 to 30 °C, natural lighting and an irrigation applied twice a week with top water. Results revealed that primary root length and the above-ground biomass increased with mycorrhization. In addition, mycorrhization promoted net photosynthesis (at 400 ppm and at saturation point), the apparent quantum yield, the water use efficiency, and the photosynthetic pigments contents. However, inoculation decreased the light compensation point for both species. Effectiveness of T. boudieri inoculation on Quercus sp. performance, highlights the potential of the mycorrhization process to improve forest management and resilience to climate change.

The impact of salt stress is becoming more prevalent each year, largely due to the effects of climate change. Limited availability of salt-free water is rising concern for hydroponics lettuce production. Despite evidence supporting salt stress-induced quality losses and physiological changes, studies on romaine lettuce salt-stress tolerance are limited. This study examined the mechanism underlying the sodium chloride (NaCl) tolerance (0, 50, 100, and 150 mM) of lettuce on its growth and nutrition at late-rosette and early head-formation stages. Results revealed 76% fresh mass reduction under increased NaCl at both stages. The study also found unchanged carbon assimilation with reduced stomatal conductance under increased NaCl. Salt-stressed lettuce accumulated more boron and iron but had reduced phosphorus and calcium. Phenolics and sugars increased linearly under salt stress, suggesting that lettuce responds to increased oxidative stress at both stages. A positive association between salt treatment and sodium to potassium ion ratio indicated lettuce sensitivity to salt stress at both stages. [ABSTRACT FROM AUTHOR]

SUMMARY: The flexibility of plant growth, development and stress responses is choreographed by an intricate network of signaling cascades and genetic programs. However, it is metabolism that ultimately executes these programs through the selective delivery of specific building blocks and energy. Photosynthetic carbon fixation is the central pillar of the plant metabolic network, the functioning of which is conditioned by environmental fluctuations. Hence, regulation of carbon assimilation metabolism must be particularly versatile and rapid to maintain efficiency and avoid dysfunction. While changes in gene expression can adjust the global inventory and abundance of relevant proteins, their specific characteristics are dynamically altered at the post‐translational level. Here we highlight studies that show the extent of the regulatory impact by post‐translational modification (PTM) on carbon assimilation metabolism. We focus on examples for which there has been empirical evidence of functional changes associated with a PTM, rather than just the occurrence of PTMs at specific sites in proteins, as regularly detected in proteomic studies. The examples indicate that we are only at the beginning of deciphering the PTM‐based regulatory network that operates in plant cells. However, it is becoming increasingly clear that targeted exploitation of PTM engineering has the potential to control the metabolic flux landscape as a prerequisite for increasing crop yields, modifying metabolite composition, optimizing stress tolerance, and even executing novel growth and developmental programs. [ABSTRACT FROM AUTHOR]

Formate oxidation to carbon dioxide is a key reaction in one-carbon compound metabolism, and its reverse reaction represents the first step in carbon assimilation in the acetogenic and methanogenic branches of many anaerobic organisms. The molybdenum-containing dehydrogenase FdsABG is a soluble NAD+-dependent formate dehydrogenase and a member of the NADH dehydrogenase superfamily. Here, we present the first structure of the FdsBG subcomplex of the cytosolic FdsABG formate dehydrogenase from the hydrogen-oxidizing bacterium Cupriavidus necator H16 both with and without bound NADH. The structures revealed that the two iron-sulfur clusters, Fe4S4 in FdsB and Fe2S2 in FdsG, are closer to the FMN than they are in other NADH dehydrogenases. Rapid kinetic studies and EPR measurements of rapid freeze-quenched samples of the NADH reduction of FdsBG identified a neutral flavin semiquinone, FMNH•, not previously observed to participate in NADH-mediated reduction of the FdsABG holoenzyme. We found that this semiquinone forms through the transfer of one electron from the fully reduced FMNH-, initially formed via NADH-mediated reduction, to the Fe2S2 cluster. This Fe2S2 cluster is not part of the on-path chain of iron-sulfur clusters connecting the FMN of FdsB with the active-site molybdenum center of FdsA. According to the NADH-bound structure, the nicotinamide ring stacks onto the re-face of the FMN. However, NADH binding significantly reduced the electron density for the isoalloxazine ring of FMN and induced a conformational change in residues of the FMN-binding pocket that display peptide-bond flipping upon NAD+ binding in proper NADH dehydrogenases.

Here, we report recent progress our laboratories have made in understanding the maturation and reaction mechanism of the cytosolic and NAD+-dependent formate dehydrogenase from Cupriavidus necator. Our recent work has established that the enzyme is fully capable of catalyzing the reverse of the physiological reaction, namely, the reduction of CO2 to formate using NADH as a source of reducing equivalents. The steady-state kinetic parameters in the forward and reverse directions are consistent with the expected Haldane relationship. The addition of an NADH-regenerating system consisting of glucose and glucose dehydrogenase increases the yield of formate approximately 10-fold. This work points to possible ways of optimizing the reverse of the enzyme's physiological reaction with commercial potential as an effective means of CO2 remediation. New insight into the maturation of the enzyme comes from the recently reported structure of the FdhD sulfurase. In E. coli, FdhD transfers a catalytically essential sulfur to the maturing molybdenum cofactor prior to insertion into the apoenzyme of formate dehydrogenase FdhF, which has high sequence similarity to the molybdenum-containing domain of the C. necator FdsA. The FdhD structure suggests that the molybdenum cofactor may first be transferred from the sulfurase to the C-terminal cap domain of apo formate dehydrogenase, rather than being transferred directly to the body of the apoenzyme. Closing of the cap domain over the body of the enzymes delivers the Mo-cofactor into the active site, completing the maturation of formate dehydrogenase. The structural and kinetic characterization of the NADH reduction of the FdsBG subcomplex of the enzyme provides further insights in reversing of the formate dehydrogenase reaction. Most notably, we observe the transient formation of a neutral semiquinone FMNH, a species that has not been observed previously with holoenzyme. After initial reduction of the FMN of FdsB byNADHto the hydroquinone (with a kred of 680 s-1 and Kd of 190 μM), one electron is rapidly transferred to the Fe2S2 cluster of FdsG, leaving FMNH. The Fe4S4 cluster of FdsB does not become reduced in the process. These results provide insight into the function not only of the C. necator formate dehydrogenase but also of other members of the NADH dehydrogenase superfamily of enzymes to which it belongs.

Bulb onion (Allium cepa L.) is an economically valuable vegetable crop in the United States. Onion production is threatened by onion thrips, which are the vector for Iris yellow spot virus, which is the causal agent of Iris yellow spot (IYS). New Mexico State University (NMSU) breeding lines 12-236, 12-238, 12-243, and 12-337 have exhibited fewer IYS disease symptoms in the field; however, little is known about the effects of the disease on the photosynthesis rate (Pn). We hypothesized that these NMSU breeding lines would have a higher Pn than IYS-susceptible cultivars Rumba and Stockton Early Yellow. To test this hypothesis, a field study was conducted for 3 years at NMSU, and Pn was measured five times throughout each season at 2-week intervals. During bulb development and maturation, which occurred at 10 and 12 weeks after transplanting, all NMSU breeding lines exhibited a higher Pn when compared with that of an IYS-susceptible cultivar. Pn was highest at the end of the vegetative growth stage and decreased as bulbs approached maturation for all cultivars. Additionally, a high Pn at 10 and 12 weeks after transplanting coincided with high bulb weight at harvest. NMSU breeding lines have increased Pn compared with that of IYS-susceptible cultivars and resulted in larger and more marketable bulbs. These results indicate that maintaining Pn may be related to reduced IYS symptom expression of onion.

Abstract Background Our understanding of the physiological responses of rice inflorescence (panicle) to environmental stresses is limited by the challenge of accurately determining panicle photosynthetic parameters and their impact on grain yield. This is primarily due to the lack of a suitable gas exchange methodology for panicles and non-destructive methods to accurately determine panicle surface area. Results To address these challenges, we have developed a custom panicle gas exchange cylinder compatible with the LiCor 6800 Infra-red Gas Analyzer. Accurate surface area measurements were determined using 3D panicle imaging to normalize the panicle-level photosynthetic measurements. We observed differential responses in both panicle and flag leaf for two temperate Japonica rice genotypes (accessions TEJ-1 and TEJ-2) exposed to heat stress during early grain filling. There was a notable divergence in the relative photosynthetic contribution of flag leaf and panicles for the heat-tolerant genotype (TEJ-2) compared to the sensitive genotype (TEJ-1). Conclusion The novelty of this method is the non-destructive and accurate determination of panicle area and photosynthetic parameters, enabling researchers to monitor temporal changes in panicle physiology during the reproductive development. The method is useful for panicle-level measurements under diverse environmental stresses and is sensitive enough to evaluate genotypic variation for panicle physiology and architecture in cereals with compact inflorescences.

Diuron herbicide has been used in the pineapple plantation in Lampung, Indonesia, for more than 35 years. It has been realized that the use of herbicides with the same mode of action intensively can speed up the evolution of resistant weeds over a long period of time. This study aimed to determine whether Dactyloctenium aegyptium from pineapple plantation has evolved resistance to diuron and to examine whether the resistance correlates with the weed physiological activities. The study was conducted at the University of Lampung, from September 2018 to March 2019. The study consisted of two stages, i.e. Stage 1: Weed resistance test and Stage 2: Physiological activity test on resistant weed. The study used a split-plot design. The main plot was the origins of weeds (exposed and unexposed to diuron) and thhe supplots was the diuron dose. The result showed that D. aegyptium exposed has high-level resistance to diuron. The physiological activities of D. aegyptium which has a high level of diuron resistance exhibited higher carbon assimilation, stomatal conductance, and transpiration rates than the sensitive D. aegyptium.

Since CO2 is the fundamental substrate for photosynthesis, fluctuating concentrations have a direct effect on plant growth and metabolism. Accordingly, CO2 enrichment within a certain range was found to improve photosynthesis, yields and the quality of plants. In order to further understand the underlying impact of CO2 enrichment, this study employed an open-top chamber growth box model with the following two treatments: control treatment (CO2 concentration: 380 ± 30 μL/L) and CO2 enrichment (1200 ± 50 μL/L). The effects on leaf carbon assimilation, fruit yield and quality were subsequently determined. The net photosynthetic rate, intercellular CO2 concentration, dry matter accumulation and soluble sugar content in the oriental melon leaves increased significantly on day 5 of CO2 enrichment. Moreover, a significant increase in the activity of carbon assimilation-related enzymes Rubisco, RCA, FBPase and CA was also observed, with the upregulation of CmRubisco, CmRCA, CmFBPase and CmCA gene expression from day 15 of CO2 enrichment. Thus, the yield per plant and content of soluble sugars and soluble solids in the fruit also increased significantly. These findings suggest that CO2 enrichment has positive effects on oriental melon growth, increasing photosynthesis and the activity of photosynthetic carbon-assimilation-related enzymes and associated gene expression, thereby improving fruit yields and quality. These results provide a foundation for the CO2 enrichment of oriental melon cultivated in solar greenhouses in autumn/winter and winter/spring. [ABSTRACT FROM AUTHOR]

Main conclusion: GRA117 is crucial in the process of carbon assimilation in rice as it regulates the development of chloroplasts, which in turn facilitates the Calvin–Benson cycle. Carbon assimilation is a critical process for plant growth, and despite numerous relevant studies, there are still unknown constraints. In this study, we isolated a rice mutant, gra117, which exhibited seedling albinism, delayed chloroplast development, decreased chlorophyll content, reduced yield, and seedling stress susceptibility, as compared to WT. Our further investigations revealed that gra117 had a significantly lower net photosynthetic carbon assimilation rate, as well as reduced levels of Rubisco enzyme activity, RUBP, PGA, carbohydrate, protein content, and dry matter accumulation. These findings provide evidence for decreased carbon assimilation in gra117. By mapping cloning, we discovered a 665 bp insertion in the GRA117 promoter region that decreases GRA117 transcriptional activity and causes the gra117 phenotype. GRA117 encodes PfkB-type fructokinase-like 2, which is subcellularly localized in chloroplasts and is widely expressed in various rice tissues, particularly at high levels in leaf tissues. GRA117 transcription is regulated by the core region 1029 bp before the start codon. Our quantitative RT-PCR and Western blot assays showed that GRA117 promotes the expression and translation of photosynthetic genes. RNA-Seq analysis revealed that GRA117 plays a significant role in photosynthetic carbon fixation, carbon metabolism, and chloroplast ribosome-related pathways. Our study supports that GRA117 promotes the Calvin–Benson cycle by regulating chloroplast development, ultimately leading to enhanced carbon assimilation in rice. [ABSTRACT FROM AUTHOR]

The increase in frequency and intensity of drought events have hampered coffee production in the already threatened Amazon region, yet little is known about key aspects underlying the variability in yield potential across genotypes, nor to what extent higher productivity is linked to reduced drought tolerance. Here we explored how variations in morphoanatomical and physiological leaf traits can explain differences in yield and vulnerability to embolism in 11 Coffea canephora genotypes cultivated in the Western Amazon. The remarkable variation in coffee yield across genotypes was tightly related to differences in their carbon assimilation and water transport capacities, revealing a diffusive limitation to photosynthesis linked by hydraulic constraints. Although a clear trade‐off between water transport efficiency and safety was not detected, all the studied genotypes operated in a narrow and/or negative hydraulic safety margin, suggesting a high vulnerability to leaf hydraulic failure (HF), especially on the most productive genotypes. Modelling exercises revealed that variations in HF across genotypes were mainly associated with differences in leaf water vapour leakage when stomata are closed, reflecting contrasting growth strategies. Overall, our results provide a new perspective on the challenges of sustaining coffee production in the Amazon region under a drier and warmer climate. Summary statement: By combining morphoanatomical analysis with modelling exercises, we revealed that traits associated with high yield lead to increased vulnerability to leaf drought‐induced mortality in cultivars of Coffea canephora, evidencing a worrying scenario for coffee production in a warmer and drier world. [ABSTRACT FROM AUTHOR]

Bulb onion (Allium cepa L.) is an economically valuable vegetable crop in the United States. Onion production is threatened by onion thrips, which are the vector for Iris yellow spot virus, which is the causal agent of Iris yellow spot (IYS). New Mexico State University (NMSU) breeding lines 12-236, 12-238, 12-243, and 12-337 have exhibited fewer IYS disease symptoms in the field; however, little is known about the effects of the disease on the photosynthesis rate (Pn). We hypothesized that these NMSU breeding lines would have a higher Pn than IYS-susceptible cultivars Rumba and Stockton Early Yellow. To test this hypothesis, a field study was conducted for 3 years at NMSU, and Pn was measured five times throughout each season at 2-week intervals. During bulb development and maturation, which occurred at 10 and 12 weeks after transplanting, all NMSU breeding lines exhibited a higher Pn when compared with that of an IYS-susceptible cultivar. Pn was highest at the end of the vegetative growth stage and decreased as bulbs approached maturation for all cultivars. Additionally, a high Pn at 10 and 12 weeks after transplanting coincided with high bulb weight at harvest. NMSU breeding lines have increased Pn compared with that of IYS-susceptible cultivars and resulted in larger and more marketable bulbs. These results indicate that maintaining Pn may be related to reduced IYS symptom expression of onion. [ABSTRACT FROM AUTHOR]

In addition to studies on central carbon and whole plant metabolism, with isotopes, investigations into lipid metabolism are also an important focus and greatly intrigue me. Carbon assimilation, carbon partitioning, central carbon metabolism, isotope labeling, lipid metabolism, metabolic flux analysis, spatiotemporal metabolism, emergent properties Therefore, it should not be too surprising that the papers I mention here emphasize dynamic central carbon or lipid metabolism or whole plant metabolism unveiled using isotopes, by some excellent scientists in the field. Keywords: carbon assimilation; carbon partitioning; central carbon metabolism; emergent properties; isotope labeling; lipid metabolism; metabolic flux analysis; spatiotemporal metabolism EN carbon assimilation carbon partitioning central carbon metabolism emergent properties isotope labeling lipid metabolism metabolic flux analysis spatiotemporal metabolism 710 713 4 01/09/23 20230201 NES 230201 What inspired your interest in plant science?. [Extracted from the article]

Rubisco catalysis is complex and includes an activation step through the formation of a carbamate at the conserved active site lysine residue and the formation of a highly reactive enediol that is the key to its catalytic reaction. The formation of this enediol is both the basis of its success and its Achilles' heel, creating imperfections to its catalytic efficiency. While Rubisco originally evolved in an atmosphere of high CO2, the earth's multiple oxidation events provided challenges to Rubisco through the fixation of O2 that competes with CO2 at the active site. Numerous catalytic screens across the Rubisco superfamily have identified significant variation in catalytic properties that have been linked to large and small subunit sequences. Despite this, we still have a rudimentary understanding of Rubisco's catalytic mechanism and how the evolution of kinetic properties has occurred. This review identifies the lysine base that functions both as an activator and a proton abstractor to create the enediol as a key to understanding how Rubisco may optimize its kinetic properties. The ways in which Rubisco and its partners have overcome catalytic and activation imperfections and thrived in a world of high O2, low CO2, and variable climatic regimes is remarkable. [ABSTRACT FROM AUTHOR]

Abstract Background Stable isotope labeling is a non-invasive, sensitive means of monitoring metabolic flux in plants. The most physiologically meaningful information is obtained from experiments that take advantage of the natural photosynthetic carbon assimilation pathway to introduce a traceable marker with minimal effects on the physiology of the organism. The fundamental substrate in isotopic labeling experiments is 13CO2, which can reveal the earliest events in carbon assimilation and realistically portray downstream metabolism when administered under conditions suitable for making kinetic inferences. Efforts to improve the accuracy and resolution of whole plant labeling techniques have focused on improvements in environmental control, air flow characteristics, and harvesting methods. Results Here we present a dynamic flow cuvette designed for single Arabidopsis thaliana labeling experiments. We have also verified its suitability for labeling Nicotiana benthamiana and essential oils in Pelargonium graveolens. Complete plans for fabrication of this device are included. The design includes three important innovations. First, uniform, circular air flow over the rosette surface is accomplished by a fan and deflector that creates a mini-cyclone effect within the chamber interior. Second, a network of circulating canals connected to a water bath provides temperature control to within ± 0.1 ºC under variable irradiance, humidity, and air flow conditions. When photosynthetically active radiation (PAR) was varied over a range of 1000 μEinsteins m−2 s−1 with no adjustment to the external temperature control system, the abaxial leaf temperature changed by

[Display omitted] • The primary source facies and secondary alteration commonly control oil isotopic compositions. • Increasing maturity causes the carbon isotopic composition to become heavier. • Source facies-related carbon assimilation controls the compositions of short-, middle-, and long-chain compounds. • Type U and Type N oils mainly reflect the difference in source facies. Carbon isotopes have been used extensively in tracing the sources of oil. However, primary source facies and secondary alteration controls on oil isotopic compositions have not been well resolved, resulting in application uncertainties. A case study was undertaken for an alkaline lacustrine oil system in a lower Permian formation in the Junggar Basin, NW China. Results indicate that increasing maturity causes the carbon isotopic composition to become heavier for only short–middle-chain compounds, whereas source facies-related carbon assimilation controls the compositions of short-, middle-, and long-chain compounds. In particular, light-carbon assimilation during organic-matter degradation makes the isotopic composition lighter, whereas heavy carbon from the water mass makes it heavier. Accordingly, oils in this study area were divided into Type U and Type N oils based on individual compound carbon isotopic compositions, reflecting the difference in source facies in a highly saline and reducing stratified water environment. The results provide a better understanding of the controls on carbon isotopes in oil in sedimentary basins, reducing the uncertainty in oil–source correlation and addressing the origin of oil. [ABSTRACT FROM AUTHOR]

It has been shown that increased concentrations of zinc oxide nanoparticles (nano-ZnO) in the soil are harmful to plant growth. However, the sensitivity of different wheat cultivars to nano-ZnO stress is still unclear. To detect the physiological response process of wheat varieties with different tolerance to nano-ZnO stress, four wheat cultivars (viz., cv. TS1, ZM18, JM22, and LM6) with different responses to nano-ZnO stress were selected, depending on previous nano-ZnO stress trials with 120 wheat cultivars in China. The results found that nano-ZnO exposure reduced chlorophyll concentrations and photosynthetic electron transport efficiency, along with the depressed carbohydrate metabolism enzyme activities, and limited plant growth. Meanwhile, the genotypic variation in photosynthetic carbon assimilation under nano-ZnO stress was found in wheat plants. Wheat cv. JM22 and LM6 possessed relatively lower Zn concentrations and higher leaf nitrogen per area, less reductions in their net photosynthetic rate, a maximum quantum yield of the PS II (Fv/Fm), electron transport flux per cross-section (ETo/CSm), trapped energy flux per cross-section (TRo/CSm), and total soluble sugar and sucrose concentrations under nano-ZnO stress, showing a better tolerance to nano-ZnO stress than wheat cv. TS1 and ZM18. In addition, the chlorophyll a fluorescence parameters Fv/Fm, ETo/CSm, and TRo/CSm could be used to rapidly screen wheat varieties resistant to nano-ZnO stress. The results here provide a new approach for solving the issues of crop yield decline in regions polluted by heavy metal nanoparticles and promoting the sustainable utilization of farmland with heavy metal pollution.

Polygonatum odoratum (Mill.) Druce possesses widespread medicinal properties; however, the continuous cropping (CC) often leads to a severe consecutive monoculture problem (CMP), ultimately causing a decline in yield and quality. Photosynthesis is the fundamental process for plant growth development. Improving photosynthesis is one of the most promising approaches to increase plant yields. To better understand how P. odoratum leaves undergo photosynthesis in response to CC, this study analyzed the physiochemical indexes and RNA-seq. The physiochemical indexes, such as the content of chlorophyll (chlorophyll a, b, and total chlorophyll), light response curves (LRCs), and photosynthetic parameters (Fv/Fm, Fv/F0, Fm/F0, Piabs, ABS/RC, TRo/RC, ETo/RC, and DIo/RC) were all changed in P. odoratum under the CC system. Furthermore, 13,798 genes that exhibited differential expression genes (DEGs) were identified in the P. odoratum leaves of CC and first cropping (FC) plants. Among them, 7932 unigenes were upregulated, while 5860 unigenes were downregulated. Here, the DEGs encoding proteins associated with photosynthesis and carbon assimilation showed a significant decrease in expression under the CC system, such as the PSII protein complex, PSI protein complex, Cytochorome b6/f complex, the photosynthetic electron transport chain, light-harvesting chlorophyll protein complex, and Calvin cycle, etc., -related gene. This study demonstrates that CC can suppress photosynthesis and carbon mechanism in P. odoratum, pinpointing potential ways to enhance photosynthetic efficiency in the CC of plants.

A cost-effective enhancement of leafy vegetable yield and health-promoting quality may be achieved by combining moderate stress conditions with the application of bioactive compounds. The aim of this work is to study how salt stress and triacontanol interact with each other in modulating vegetative growth, photosynthetic light use efficiency, carbon dioxide uptake, and chlorophyll and carotenoid pigment content of spinach plants grown under controlled conditions. Besides stimulating metabolic processes related to growth and photosynthetic production, treatments with 1 μM triacontanol once in three days significantly compensate for the deleterious effects of salt stress induced with 250 mM NaCl.

Background: Our understanding of the physiological responses of rice inflorescence (panicle) to environmental stresses is limited by the challenge of accurately determining panicle photosynthetic parameters and their impact on grain yield. This is primarily due to the lack of a suitable gas exchange methodology for panicles and non-destructive methods to accurately determine panicle surface area. Results: To address these challenges, we have developed a custom panicle gas exchange cylinder compatible with the LiCor 6800 Infra-red Gas Analyzer. Accurate surface area measurements were determined using 3D panicle imaging to normalize the panicle-level photosynthetic measurements. We observed differential responses in both panicle and flag leaf for two temperate Japonica rice genotypes (accessions TEJ-1 and TEJ-2) exposed to heat stress during early grain filling. There was a notable divergence in the relative photosynthetic contribution of flag leaf and panicles for the heat-tolerant genotype (TEJ-2) compared to the sensitive genotype (TEJ-1). Conclusion: The novelty of this method is the non-destructive and accurate determination of panicle area and photosynthetic parameters, enabling researchers to monitor temporal changes in panicle physiology during the reproductive development. The method is useful for panicle-level measurements under diverse environmental stresses and is sensitive enough to evaluate genotypic variation for panicle physiology and architecture in cereals with compact inflorescences. [ABSTRACT FROM AUTHOR]

Drought is a primary constraint to crop yields and climate change is expected to increase the frequency and severity of drought stress in the future. It has been hypothesized that crops can be made more resistant to drought and better able to sequester atmospheric carbon in the soil by selecting appropriate root phenotypes. We introduce OpenSimRoot_v2, an upgraded version of the functional-structural plant/soil model OpenSimRoot, and use it to test the utility of a maize root phenotype with fewer and steeper axial roots, reduced lateral root branching density, and more aerenchyma formation (i.e. the 'Steep, Cheap, and Deep' (SCD) ideotype) and different combinations of underlying SCD root phene states under rainfed and drought conditions in three distinct maize growing pedoclimatic environments in the USA, Nigeria, and Mexico. In all environments where plants are subjected to drought stress the SCD ideotype as well as several intermediate phenotypes lead to greater shoot biomass after 42 days. As an additional advantage, the amount of carbon deposited below 50 cm in the soil is twice as great for the SCD phenotype as for the reference phenotype in 5 out of 6 simulated environments. We conclude that crop growth and deep soil carbon deposition can be improved by breeding maize plants with fewer axial roots, reduced lateral root branching density, and more aerenchyma formation. [ABSTRACT FROM AUTHOR]